core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	56319	57485	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	1	1167	GCA_001983955_1_1_48	GCA_001983955_1_1_48	-	1966910	.	PDB:1Z19_B	Integrase	MKITQHTKKDGSAVYRSSIYLGIDSVTGKKVKTTISARTKKELRNKATQVKVEFEKNGSTRKQRSHITTYSELVDLFWQTYQHTVKTNTQIKIKGCLNNYLLPSFGTYKLDKLTPVIIQTQVNKWADEYNQDGTGYKEYNHLHALNKRILQYGVSIQALDNNPARDVVIPRKITRDKQEIKYFQDQELKSFLSYLDNLENTFVNFYDTVLYKTLLATGLRIRECLALEWSDIDLQNGTIDINKTLNILNQVNGPKTKSSYRVLDIDHKTVLMLRLYRARQAENGRNIGLTYEKVFSDSFDNYVNTRKVDYRLHKHLKNANCTDLGFHAFRHTHASILLNAGLPYKEIQTRLGHAKISVTMDTYSHLSKENQKRAVSFFETALEKIKSS*	common_virus_hmm	common_virus	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0001	cloud	indirect	.	.	.	GCA_902460365.1_00851
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	57836	58807	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	1518	2489	GCA_001983955_1_1_49	GCA_001983955_1_1_49	-	1966910	.	COG4823	Abortive infection bacteriophage resistance protein  [Defense mechanisms]. 	MKPFADETKQIDILKSRNLLFLDEDKAKRVLMNYGYYEVVNGYKMFLLEDSSTREQYKPGATFEHLTALYELDKSIRNGVIQASLEIELSLRTAIAYTLAEDFGVEQRQYLYYKNFRQGDTIWSDSQPTNERAILLNKLFHLENRNIEPLNHYRTNHGHIPPWILLKESTFGNLKYIFKLLKGPQKDKVISICYGIDISDVTDNLRSLFKDTLDVVNSFRNRAAHSGRIFNFKSTIYKIRYNNTFHNKVEITPAQYRIGLGQSDLYTLSKILDYFDNKKAKINLDVYISYSIKKHCENYKEDLELLANEMNYPLDELKQELKE*	mmseqs_cdd	nonviral_gene	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0002	cloud	indirect	.	.	.	GCA_016127735.1_01035
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	58994	59263	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	2676	2945	GCA_001983955_1_1_50	GCA_001983955_1_1_50	-	1966910	.	PF13783.6	Domain of unknown function (DUF4177)	MGFFDTVKQEGSFSTASGVNGLHYVVLQVTLKEKFFGTGSGNLTELEDVINKQASKGYRLHTITTANGGSKGLGGGDRIQATMVFEKII*	hhsuite_tools	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0003	cloud	indirect	.	.	.	GCA_024295885.1_00739
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	59269	59835	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	2951	3517	GCA_001983955_1_1_51	GCA_001983955_1_1_51	-	1966910	.	PFAM:PF10078.8	transcriptional-regulator	MEIKLKEFREKENLSLNKLRRILKEKYNITVSDSQLMYYENGTRKPRNNKVWESLADYFGVSVATLLGHDEISPEEMTTKLQDFFENLDMNELNNIKPNYDLLKKVQSAYENVEEHINNPKKYENFGKGLADFNQSYMLTIEKLIVNDIEMGTNFADILINYISLNDYDKKIAFDLVQKLSERDNEKE*	phrogs_hmm	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0004	cloud	indirect	.	.	.	GCA_000960065.1_01616
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	60004	60192	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	3686	3874	GCA_001983955_1_1_52	GCA_001983955_1_1_52	+	1966910	.	PFAM:PF10078.8	transcriptional-regulator	MIITQSQAKALRRKKADLQLKNYELAFEIGVSPKTVPKILKGDYKAPKRIYASVMEWLAKDY*	phrogs_hmm	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0005	cloud	indirect	.	.	.	GCA_001807785.1_00360
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	60356	60958	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	4038	4640	GCA_001983955_1_1_53	GCA_001983955_1_1_53	+	1966910	.	pfam09669	Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	MELVYMDGKKEPYTLSSIVAECTGLQHHTITKTIRKHQERFERFGKVGFKIQAMESGQNTKDYILNEQQATLLVTFLKNTEQVANFKTNLVKAFFEMRDELSKRYLQRELEKPKRKSLTEAIQTWEKAPKHAYSTLTNLLLKGVTGKHKAQLMKERESKNGIDGLTSVELISYQRLEDMAIAMINLNRGYSEIKELIFKA*	mmseqs_cdd	common_virus	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0006	cloud	indirect	.	.	.	GCA_016127635.1_00706
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	60970	61230	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	4652	4912	GCA_001983955_1_1_54	GCA_001983955_1_1_54	+	1966910	.	.	hypothetical protein	MENEFKTVTNAKGLEIPKYSNDFKKLVEKDRSLAEYICMNYENLDSEDLGAFLETVEQGISWILDLIESKDLLYKPKSGSNHAKRK*	.	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0007	cloud	indirect	.	.	.	GCA_019929305.1_01677
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	61566	61766	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	5248	5448	GCA_001983955_1_1_55	GCA_001983955_1_1_55	+	1966910	.	.	hypothetical protein	MTLDLDNMTQSEFDNRITEIKDRNPNLFQFIIDFLDDKVTPEEVYDFLKMERSYQVNYIKNYKARA*	.	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0008	cloud	indirect	.	.	.	GCA_938040075.1_01571
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	61768	61977	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	5450	5659	GCA_001983955_1_1_56	GCA_001983955_1_1_56	+	1966910	.	.	hypothetical protein	MNELELSNTQSIVFTLLLLGLLLYLNRRDRKKSAQIERESTQTIETTSEDLSPDYGRYIQLAAVKPWGY*	.	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0009	cloud	indirect	.	.	.	GCA_002096835.1_00797
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	61931	62251	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	5613	5933	GCA_001983955_1_1_57	GCA_001983955_1_1_57	+	1966910	.	PFAM:PF12964.6	HTH-DNA-binding-protein	MGDIFSLQRLSHGGTNMFEKMIEDLKSKILEAVERYLKSHEKVPQKRLDLISKVELKEELGIGDKTLIKWEGAGLPQYIPPIEDTRKAYYKISDVLKFLGVDDGKD*	phrogs_hmm	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0010	cloud	indirect	.	.	.	GCA_000963255.1_00271
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	62238	63095	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	5920	6777	GCA_001983955_1_1_58	GCA_001983955_1_1_58	+	1966910	.	PFAM:PF07261.10	Replication-initiation-and-membrane-attachment	MAKTKIYFWLKVDKKFFDNLFIKRLKNMPGGYTMTVIYIRLMLESLEDDCILYYEGYFDNLVQELALKLDVSEDDINMTVAYFTKCGLIQIDDDGHATLSQAKAMVESETNWAKYKRDQRKNSQDIPKLENVQNKKTISNSCPTDIEIDKESDKELYKEYILSGKPDFTFPNWLTPRMIEEITKGHPEKYLIRIPLAYLNHTVGKNYKYLDKNLKPIMARFKEGYTLEDFKQVIDIKTAEWKDSPEFSKYLRPETLFGTKFDGYLNQKPKTIKGKSEGNFPDLPF*	rep_hall_hmm	common_virus	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0011	cloud	indirect	.	.	.	GCA_017655685.1_00098
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	63107	63952	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	6789	7634	GCA_001983955_1_1_59	GCA_001983955_1_1_59	+	1966910	.	PDB:4M4W_K	Replicative-helicase	MKEQFKEFNNRKISDKVCDIHQVNYWEISVPVLGSSERKVQAFCPECVKGEIKQKEQDLLQQFEDRQAYFKTYDVLMRDSTIPNELKGATFDNFFVKTTEERQMLEFVKGQVQKYLAGMTGNTLISGSTGIGKSHLSLALAKEINESFREKHEPKSVLFVSLTEIIKQIKEGWAYGRNANLTEYEAVKKLVDVDFLIIDDLGAKNGTVTPKSDWEQDFLFDIINNRETTIFNTNLDSSELRTVYNARNSSRILKGLEGNTFKAFTIKDKRYTINTVRGEFQ*	rep_hall_hmm	common_virus	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0012	shell	indirect	.	.	.	GCA_000223295.2_01071
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	63949	64110	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	7631	7792	GCA_001983955_1_1_60	GCA_001983955_1_1_60	+	1966910	.	PF13128.6	Protein of unknown function (DUF3954)	MNDDKMRFATEKGFVVYEKCGIIEIEKVPRFGEITLFYSDGKFTHLVKKETKK*	hhsuite_tools	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0013	cloud	indirect	.	.	.	GCA_003351705.1_01723
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	64200	64430	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	7882	8112	GCA_001983955_1_1_61	GCA_001983955_1_1_61	+	1966910	.	.	hypothetical protein	MSGDTSLGYVVANKFSMDPDKRQKIFSQCKKEDDSLEQRKQEILEKYANKQDKSKSRKDDSKGSESSKRKAKSKEF*	.	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0014	shell	indirect	.	.	.	GCA_015560245.1_01420
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	64480	65340	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	8162	9022	GCA_001983955_1_1_62	GCA_001983955_1_1_62	+	1966910	.	PFAM:PF06673.10	Major-Capsid-protein	MTTNLAKQKENLEAYIRSTGYNTRGMNVENNHVLIEKPILDSYENEHQRKELVDLVNVIETRTRGGKYEVTDFESDSLQEVSENSVERTEADKKKTISVDYLVKLFSGKLDFSQEQLDDGQYNLTDFLGKKIIKLKRRTRNKEIGKILQTAKVQTATSIDDLKSIVSLINPERNVSMVVSQSLFSVLEKMKDTSGNYLLKVDKETGTSETFFVDNFLIVDDTTLGNKGDKKGFIGDLENFVTLFDRKKDTLSWVNANDYFGKRLILHTRFDVKKIEEDCGYFIQWN*	hallmark_hmm	common_virus	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0015	shell	indirect	.	.	.	GCA_000159495.1_00419
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	65350	65898	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	9032	9580	GCA_001983955_1_1_63	GCA_001983955_1_1_63	+	1966910	.	PFAM:PF04735.11	DNA-primase	MDINQVFETLDDLDNKKSKINSAREQLSEKRKSLLGNQTVSFENIDNFLSNNLESLEQLEKMEKAINSLQEKYNSDFSEAKAVIFEYIFKETKQRMETKKIYKQYRKKLRRILDAYDEIQELKKDVEEIHTGVVREISQKHSLSTYRTEVSPLTVLPFLNPDISGWMDFSKEYRDIKVYLEK*	phrogs_hmm	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0016	cloud	indirect	.	.	.	GCA_000960005.1_01959
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	66276	66686	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	9958	10368	GCA_001983955_1_1_64	GCA_001983955_1_1_64	+	1966910	.	PFAM:PF05263.10	transcriptional-regulator	MYELSNRDLDGIDIELGRYRTLANKIYLRRQELIHNKKHSTEDYTGGKGKTVSSPTEATIIRIEEDQTLRYLEGFKLVVDTLMENLIESDLVIFKMRYLEAGATWEDVAEKLNKTTRYINSRRKVIAKRFIELKGY*	phrogs_hmm	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0017	cloud	indirect	.	.	.	GCA_013277315.1_01635
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	66825	67169	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	10507	10851	GCA_001983955_1_1_65	GCA_001983955_1_1_65	+	1966910	.	PFAM:PF04883.11	putative-tail-component	MDLAAQLANILAEYCEEVNEEVDKIAEQVAKETVKELKETSPKRTGKYSKGWRKKRVRNGVWVVYSFKYGSLTHLLEFGHIKRNGGRTKAYPHLRPAELNAIQKFTERIKNISK*	hallmark_hmm	common_virus	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0018	cloud	indirect	.	.	.	GCA_008726415.1_00304
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	67228	67464	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	10910	11146	GCA_001983955_1_1_66	GCA_001983955_1_1_66	-	1966910	.	.	hypothetical protein	MGVILTSSAGKKLARSNVLFLLPANIIAYPLKLIYNPNPAKEKDKSIEDRAKASRTFILSNSNMRSKDKKPSEINLRT*	.	hypothetical_protein	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0019	infer_flexible	indirect	.	.	.	no_good_uniDB_hits
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	67650	68108	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	11332	11790	GCA_001983955_1_1_67	GCA_001983955_1_1_67	+	1966910	.	COG4463	Transcriptional regulator CtsR [Transcription]. 	MRFKNTSDHIEAYIKAILDQSGIVELQRSQLADTFQVVPSQINYVIKTRFTESRGYLVESKRGGGGYIRIGRIEFSNHHEMLRDLLYSVGERVSQEIYEDILQLLVEQDLMTKQEMTLLTSVATDRVLGEESSVVRANMLRQLLQEVDRKEK*	mmseqs_cdd	nonviral_gene	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0020	persistent	indirect	.	.	.	GCA_000176955.1_00345
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	68110	70542	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	11792	14224	GCA_001983955_1_1_68	GCA_001983955_1_1_68	+	1966910	.	PDB:4M4W_K	Replicative-helicase	MNYSKALNECIESAYMVAGHFGARYLESWHLLIAMSNHSYSVAGTTLNDYPYEMDRLEEVALELTETDYSQDETFTELPFSHRLEVLFAEAEYVASVVHAKVLGTEHVLYAILHDGNALATRILERAGFSYEDQKDQVRIAALRRNLEERAGWTREDLKALRQRHRTVSDKQNSMANMMGMPQAQSGGLEDYTHDLTEQARSGKLEPVIGRDKEISRMIQILSRKTKNNPVLVGDAGVGKTALALGLAQRIASGDVPAEMAKMRVLELDLMNVVAGTRFRGDFEERMNNIIKDIEEDGKVILFIDELHTIIGSGSGIDSTLDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVTIEEPSLADSMTILQGLKATYEKHHRVQITDEAVETAVKMAHRYLTSRHLPDSAIDLLDEAAATVQNKSKHVKADESDLTPADKALMDGKWEQAAQLIAKEEEVPVYKDLVTESDILTTLSRLSGIPVQKLTQTDAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFMFLGPTGVGKTELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQENMEKRIFEELKKTYRPEFINRIDEKVVFHSLDSKHMQEIVKIMVKPLIASLAEKGIDLKLQASALKLLASHGYNPEMGARPLRRTLQTEVEDKLAELLLKGELVAGKTLKIGVKAGQLKFDIA*	rep_hall_hmm	common_virus	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0021	persistent	indirect	.	.	.	GCA_000162495.1_01368
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	70688	71746	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	14370	15428	GCA_001983955_1_1_69	GCA_001983955_1_1_69	+	1966910	.	TIGR01526	nicotinamide-nucleotide adenylyltransferase, NadR type. The NadR protein of E. coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal to the region covered by this model, is a DNA-binding helix-turn-helix domain (pfam01381) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.	MKKKTAVVFGTFAPLHQGHIDLIQRAKRQCDQVWVVVSGYEGDRGEQVGLSLQKRFRYIREAFRDDELTSVCKLDETNLPRYPLGWQEWLDQMFAEISYDENQQGLTFFVGEEEYQQELAKRGFGTVLQERKFGISATMIRENPSKYWKYIAQPFRRQFTQKVLIMGSASNGKTTLAKDLARYYDAPVSLEYAREYQIKNNVRDDELTPKDYYYLLLGQYDQTSKLIDSNANRGLVIADTNSLVTKGYYDYYMETEDQGDLSGETFDNLFVSILAKEKWDLILFVQPVGSYVNDGFRDMTMAEDHIRYSFSQHLDQMRERYLTTIPLVYLAEDYLGNYEAAKVAIDAIYQAD*	mmseqs_cdd	nonviral_gene	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0022	persistent	indirect	.	.	.	GCA_902388305.1_00161
GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote	cenote	CDS	71756	72535	GCA_001983955.1	CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955.1_CP019562.1	GCA_001983955.1|CP019562.1	GCA_001983955_1_1	GCA_001983955_1_1@C5	15438	16217	GCA_001983955_1_1_70	GCA_001983955_1_1_70	+	1966910	.	TIGR01528	nicotinamide mononucleotide transporter PnuC. The PnuC protein of E. coli is membrane protein responsible for nicotinamide mononucleotide transport, subject to regulation by interaction with the NadR (also called NadI) protein (see TIGR01526). This model defines a region corresponding to most of the length of PnuC, found primarily in pathogens. The extreme N- and C-terminal regions are poorly conserved and not included in the alignment and model. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides]	MKKLTKKITQFIENFKNVHAEARKIGFAGIMHLLWKDLFVGRSLFQWLYLIALSSVPLILEFTQNTESHDWLSLFASWTGIVCVILVAEGRASNYLFGAINSAIYLILAMNATFYGEVLTTVYFFVMQPIGLYAWLSNRINDQGKPEESHFEAKKLSVLDWLKYLVLTAIIWIGMGLAYQSINSARPFRDSVTDATNGVGQLLMTRLYREQWIFWIATNLFSIYLWWGENIHIQGMYWVYTLNSLVGWYQWTKAVRKEV*	mmseqs_cdd	nonviral_gene	C5	16217	56319	72536	GCA_001983955.1|CP019562.1@region_56320_72536@tool_cenote_CDS_0023	persistent	indirect	.	.	.	GCA_000190695.1_00595