core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	485349	486563	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	1	1215	GCA_002073475_2_1_438	GCA_002073475_2_1_438	-	1830681	.	TIGR00210	sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines]	MSYTFSTYETLALASLVLLLGYFLVKRINVLKTFNIPEPVVGGFIVAIGLLIWHKIDGTSFNFDKNLQTTMMLVFFTSIGLSANFSRLIKGGKPLVVFLFIAALLIFGQNVIGIASSMALGIHPAYGLLAGSVTLTGGHGTGAAWADTFAHQFNLQGATEIAIACATFGLVFGGIIGGPVARFLLNRQKQGENPENDEVDDIQEAFEHPTYKRKITARSLIETIAMISVCLLIGQYLDVQTKGTALQLPTFVWCLFTGVIVRNILTNIFRFQVAESAIDVLGSVGLSIFLAIALMSLRLWELAGLAIDVLIVLAIQVAFMAAFAIFITYRAMGKDYDAVVLSAGHCGFGLGATPTAIANMQAVTSRFGPSHKAFLIVPMVGAFFIDLINAALLKVSFAVVNILA*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0001	persistent	direct	high	1214	0.999	GCA_002073475.2_00472
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	486605	488848	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	1257	3500	GCA_002073475_2_1_439	GCA_002073475_2_1_439	-	1830681	.	PDB:4FM9_A	DNA-topoisomerase-2-alpha	MTNINYEGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKKSARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPPHNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMRATWKKEDGEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRIVLVPRSNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTTVTRRLQYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAILNLRLRHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYANPRMSQLVEREEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQQELLMASDAGYGFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRKIVLKPEDLQKFRAERGRKGSTLPRGLHTNLEIMVIEP*	common_virus_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0002	persistent	direct	high	2243	1.0	GCA_002073475.2_00473
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	488915	490813	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	3567	5465	GCA_002073475_2_1_440	GCA_002073475_2_1_440	-	1830681	.	PDB:4URL_A	DNA-topoisomerase-IV	MTTNYSAQEITVLKDLEPVQIRPGMYTDTTRPNHLAQEVIDNSVDEALAGFATKIEVILHPDQSIEVTDNGRGMPVDIHPTEGVSGVEVILTKLHAGGKFSNKNYEFAGGLHGVGISVVNALSERVDIQVKRNGEIYKIAFENGSKVEELEIIGTCGRRTTGTIVHFKPNPKYFDSAKFSVSRLRHLLRAKAVLCSGLEIKFIDKVNNTQDIWLYEDGLSDYLIEAVNGFETLPKKPFVGEFKGANEAVSWALLWLPEGGELIGESYVNLIPTIQGGTHVNGLRQGLLDAIREFCEFRNLLPRGVKLTADDIWDRCSYILSLKMQDAQFAGQTKERLSSRQSAVFVSGVLKDAFSLWLNQNVQDAEKLAEIAISSAQRRLRAAKKVVRKKLVSGPALPGKLADCGSQDLEKTELFLVEGDSAGGSAKQARDREYQAILPLRGKILNTWEVSPDQVLGSTEIHDIAVALGIDPDSNDLSQLRYGKVCILADADSDGLHIATLLCALFLRHFPKLVQDGHVYVAMPPLYRIDLNKEVFYALDENEKEAILDRLKNKKGKPNVQRFKGLGEMNPSQLRETTMDPNTRRLVQLTYDLGEDQGSDTLELMDMLLAKKRSEDRKNWLQAKGDQVDLSV*	common_virus_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0003	persistent	direct	high	1898	0.999	GCA_002073475.2_00474
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	490887	491822	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	5539	6474	GCA_002073475_2_1_441	GCA_002073475_2_1_441	-	1830681	.	PRK06860	lipid A biosynthesis lauroyl acyltransferase; Provisional	MKNEKLPQFQPHFLAPKYWLFWLGVAIWRSILCLPYPILRHIGHGFGWLFSHLKVGERRAAIARRNLELCFPDMPENEREVILQENLRSVGMAIIETGMAWFWSDSRIKKWSKVEGLHYLKENQKDGIVLVGVHFLTLELGARIIGLHHPGIGVYRPNDNPLLDWLQTQGRLRSNKDMLDRKDLRGMIKALRHEETIWYAPDHDYGRKNAVFVPFFAVPDTCTTTGSYYLLKSSQNSKVIPFAPLRNKDGSGYTVSISAPVDFTDLQDETAIAARMNQIVEKEIMKDITIYMWLHRRFKTRPDEKTPSLYD*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0004	persistent	direct	high	935	0.999	GCA_002073475.2_00475
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	491919	493349	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	6571	8001	GCA_002073475_2_1_442	GCA_002073475_2_1_442	+	1830681	.	PRK11316	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE. 	MAQYSAEFKQAKVLVLGDVMLDRYWFGATNRISPEAPVPVVRVQENEERAGGAANVAMNIASLNVPVQLMGLIGQDETGSALSLLLEKQKIDCNFVALETHPTITKLRILSRHQQLLRLDFEEDFNNVDCKDLLAKLESAVKNYGALILSDYGKGTLKDVQKMIQIARKANVPVLIDPKGTDFERYRGATLLTPNMSEFEAVVGKCNTEEEIIEKGLKLISDIELTALLVTRSEKGMTLLRPNQEPYHLPTVAKEVFDVTGAGDTVISVLATALADGRSFEESCYLANVAAGIVVGKLGTSTVSTVELENAIHARPETGFGIMSEAELKDAVAQAKARGEKIVMTNGCFDILHPGHISYLENARKLGDRLIVAVNSDDSVKRLKGESRPINNLENRMAVLAGLASVDWLVPFTEDTPQRLIGEILPDLLVKGGDYKPEEIAGSKEVWANGGDVKVLNFENGCSTTNVIEKIKLLKD*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0005	persistent	direct	high	1430	0.999	GCA_002073475.2_00476
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	493536	494273	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	8188	8925	GCA_002073475_2_1_443	GCA_002073475_2_1_443	+	1830681	.	cd13517	Substrate binding domain of molybdate binding protein-like (ModA3), a member of the type 2 periplasmic binding fold superfamily. This subfamily contains molybdate binding protein-like (ModA3) domain of an ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. ModA transporters import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arrangted around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate where the central metal atom is in a hexacoordinate configuration. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge.  They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	MKKLVAVTSMILTTFSVQAADLYLYAGAGLKEPVEKIIHQYEQETGNKVTVEYGGSGQILARYNTVKSGDLFLAGSEDYVTKLQKTNDVNNIGTIVLHVPVMAIRKDKISGIDSFKALAESSLRLGIGDSKAMALGKGAEKMFELSGYQKQLNDKIVVKAATVKQLMLYLLNGDVDAAVVGRSGAWKVRDKVELLPSPKGTPEEKVTIGLLFSSKYPKEAQQLFDFFKSPQGVKYFTDEGFLPAK*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0006	shell	direct	high	737	0.999	GCA_002073475.2_00477
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	494248	494763	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	8900	9415	GCA_002073475_2_1_444	GCA_002073475_2_1_444	+	1830681	.	TIGR01581	NifC-like ABC-type porter. This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.	MKVSYRLNNCLSLKLALIPLLILLFVVMGSVLSLIAKLDFYFFQQILFNSELHFALLMSLGTSLFSLILALCIAIPSAWRMSQVRLPFQSFFDTLFDLPMVLPPLVTGLSLLLLFSSQGILAELLPFISKWIFSPVGIIIAQTYIASSILLRCSEPLKLRKKTIKTTKIKP*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0007	shell	direct	moderate	434	0.841	GCA_002073475.2_00478
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	494827	495672	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	9479	10324	GCA_002073475_2_1_445	GCA_002073475_2_1_445	-	1830681	.	PFAM:PF00145.16	DNA-methyltransferase	MANKKTFKQAPLPFIGQKRMFLKHVEIVLNKHIDGEGEGWTIVDVFGGSGLLSHTAKQLKPKATVIYNDFDGYAERLNHIDDINRLRQIIFNCLHGIIPKNGRLSKEIKEEIINKINDFKGYKDLNCLASWLLFSGQQVGSVEALFAKDFWNCVRQSDYPTAEGYLDGIEVISESFHKLIPRYQNQDKVLLLLDPPYLCTRQESYKQATYFDLIDFLRLINLTKPPYIFFSSTKSEFIRYLNYMQESKTDNWRAFENYKRIVVKASASKDGIYEDNMIYKF*	phrogs_hmm	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0008	cloud	direct	high	845	0.999	GCA_002073475.2_00479
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	496092	496328	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	10744	10980	GCA_002073475_2_1_446	GCA_002073475_2_1_446	-	1830681	.	PF06951.11	Group XII secretory phospholipase A2 precursor (PLA2G12)	MPKKHYCTGWRKAPTNINSCCHQHDRDYGIHGTISRADADKRLRECLIAQRYPFKAWIFWVIVRLLGWIFYKKNKLSH*	hhsuite_tools	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0009	.	unmatched_CDS	none	0	0	.
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	496331	498202	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	10983	12854	GCA_002073475_2_1_447	GCA_002073475_2_1_447	-	1830681	.	PDB:4OJL_C	Tailspike-protein	MYHLDNDSGVSTFALAPVKSTQRLWFTEGGHGNAISYPGADWFNMVQAELFSILDDAGIQPDKGRLNQISLAIRKLSEGKVEDFSQQLKQADGYKYIGRCKSVAELRTIRPTENGQRILVDAYYEGSTAGGGEFVADLQDLITPDDGGTCFVVPNNGGRWKRLFSSSLQDTDFGVIGGVADDTTNLNAFLDALRTYKVKGYFTSRHYKTSAALNIAGVDIEGVLAGYKNKHGTRITGNGNHNIFEQMGGELQHITYSLKNFALSGGIVGLKMTYAVNAVVENVFIDNVERAFLLGDSQFVGPIWCSLKNCRGEGRISGLEIDGNKWANANMFETCFFKGDEFAGSITAKGGIGAVSNHFVNTEFAGKGVGVKLGKNKSTAFDNCYFESEGPSLLIEDSTADLALNNATFGSLTENNKTGKTSFIHHSLGTCNMSISSGYIYLAGNNQNNLAFIESDKPESLVVNMATPVKREIYTATGFKLFKNPDLPNKNSRVHYTSGYVCEFSSQNKNAELGNGDLTAYYNLNNSRCAVGLNLKIGSSTTKGTGQWQFRLPFQASGIGKYYLGQAIAIKADGSKLMTGVARIVGGSNQVVAYFNNVNPADATRPFEWTEGDRLDISIEYEI*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0010	cloud	direct	high	1871	0.999	GCA_002073475.2_00480
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	498202	498804	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	12854	13456	GCA_002073475_2_1_448	GCA_002073475_2_1_448	-	1830681	.	PFAM:PF10076.8	tail-protein	MAMTHAQYLDAAIKLLPVGLAWKRALDSNLAKVLAVRCDQLVEVNSKAHTLIKERMPGQATLLLEEWEGFYGLPECGRQIVGKTLVQRQKQVQEKENEVGSNSKRFLEEIATQAGFKVRVVNHYPHHCLRDCTYPLYEQANHWRIFMYTPAVSSIRYATCLDDVVKNLTIFERNKELECLLKRYQYAHLEFVFIYEEETQ*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0011	cloud	direct	high	602	0.998	GCA_002073475.2_00481
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	498795	499862	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	13447	14514	GCA_002073475_2_1_449	GCA_002073475_2_1_449	-	1830681	.	PFAM:PF04865.13	Baseplate-J-like-protein	MAFNTPTLSTLIKQGEQQFQYRFPTLKRHNVIGVINRICAALSAGEHMHLDWLARQIIPTTAEEDYLIEYCLYKGIVRKQASTATGLVTVTAANDTTIPAGTVFEDTNTGLTFITTQETVVKAGTADIAVKCETTGVEGNLKAGTSLSLTSAILGLLPTATVKVMSGGADIESLSRLLARLIYRVQYPPAGGASHDYIRWATEVPGVTRAWCFERYYGGGTVGVAFACDEREDILPTPEDIARVRAYIEGHKNEVTGQFEGMPANVELYVFAPQFQAVNFKIRLAPNTPTLRQAVRKSLAAYLANAGVGALLYLSQIRATVSNTAGEVDNSVIFPTADVQLLSDNIAILGDIEWL*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0012	cloud	direct	high	1067	0.999	GCA_002073475.2_00482
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	499862	500269	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	14514	14921	GCA_002073475_2_1_450	GCA_002073475_2_1_450	-	1830681	.	COG4381	Mu-like prophage protein gp46  [Mobilome: prophages, transposons]. 	MSDLALTWHNGEGDLVLGTESLLLDDSLTNAIIISLFTDLRVEGERGWWGDSYNDGFQTGSKLWTLSRAKQLPEILDDAQLYASQALQWLVDDGVAKSVQVIASNPQMSVLLLEILVVLPDGSTEQRTFRANWSL*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0013	cloud	direct	high	407	0.998	GCA_002073475.2_00483
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	500278	500826	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	14930	15478	GCA_002073475_2_1_451	GCA_002073475_2_1_451	-	1830681	.	CDD:TIGR01644	phage-baseplate-assembly-protein-V	MQAINRIIAPLKRGLQLLVSRAVVSVVNDAYARQNLQLRLQSEEVADDVERFQNYGHYSVPKAGEAIVVSVGGKRSHLVAVVVDDKSVRPAGLIAGDSVLYHLEGHQLRLTENGEAILSCKKFTIETDTLDCSAQQITFDSPQTTFTGNVDIMGISTATDHQSSGISGKNHDHEERVGKPVP*	common_virus_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0014	cloud	direct	high	548	0.998	GCA_002073475.2_00484
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	500863	501339	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	15515	15991	GCA_002073475_2_1_452	GCA_002073475_2_1_452	-	1830681	.	PDB:1WRU_A	Tail-protein	MSASGLKVEVNDEAINRYRPMIIIADDNMTGSSGYQRADWERKRRQAEGQKATARVQGWFKPDGTLWLPNELVVLDAPQFGIHKAERLIVDCTYTLDEKGTITEMTLMHRDAFDEPADDTLDDTKDSKGKKDKGKKGKSKKAKKSDKDNVSEFTGFLD*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0015	cloud	direct	high	476	0.998	GCA_002073475.2_00485
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	501339	502124	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	15991	16776	GCA_002073475_2_1_453	GCA_002073475_2_1_453	-	1830681	.	PDB:1WRU_A	Tail-protein	MPDTNNTETNNKIELYLNGKILSGWKSLNLQRSLESMSGRFDLGIAVRPEDDISVLAAGSPLVLKMGGQTVITGYLDEIKQRVSGNDKTISVSGRDKTCDLVDCAIIHNSYQFKNQTAKQIAEAICKPFGISVVWQVQAPEANERIPVWQVEPGETAFDNLSKIARHKGVLVTSDVDGNLLFTEPSNKQVGNLTLGENLLELEQTDSWLQRFSLYRVIGDAEQGGAKGDTKTKNKAAKGKKKDDGVVEDPDIYPGPAEGGK*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0016	cloud	direct	high	785	0.999	GCA_002073475.2_00486
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	502124	503491	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	16776	18143	GCA_002073475_2_1_454	GCA_002073475_2_1_454	-	1830681	.	COG4228	Mu-like prophage DNA circulation protein  [Mobilome: prophages, transposons]. 	MASKITGKGSFRGVPFLIEEEQGLDGGRRIVSHEYPLRDEGLTEDMGKRLRRYQVSCLVIGDDHLAQAEKLIDALEASGAGTLKHPYFGTIEVRVDDYRAKNSTNHQRVTRFDINFLPAIEKNAPEIAEDTAYSVLSEYQATLNSLSDEFAEMVQDVSGFIESMVDNPLFRLADTTAAFIENIFEGVANTVSGLTEVKDKALSIKNRLSNLLLTPKVLAYELQQLTRLNVRSAVNSQRQFVQHIVITDSISSALGDLTATKNEISKSTLDEMVTAKTNNVAETEILARQFKNLHEQEIFDALMNKTTFLLKRLVLSTLAVEYGKAISDAVTESVAQKTVTEETIATLIESKTDVQRYIAEVDEQLEAVILDNADAEQWTSYAALEQYRLTLMRDLQIRGERLANAIEVKLNDTYPAILLEYRHTGNSKTWKRLALRNGISHPLFCLGGTTLEVLQ*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0017	cloud	direct	high	1367	0.999	GCA_002073475.2_00487
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	503491	505383	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	18143	20035	GCA_002073475_2_1_455	GCA_002073475_2_1_455	-	1830681	.	Uniprot:A0A0A8U8Z7_ECOLX	tail-tape-measure-protein-	MANNSTSFFVNLAGNVSQQAARFSNSIANMANKNVSSLNKVSRAISAVSKGFNGLGNITIPIIGVGAAAGATMVGKSMLRTAADFEMAKIRMKQTFGEQGEAADAWLKKFATDTPMAFADTQDAMMRLKTAGIDPMNGSLQALVDYNAKVGGDKANLDGYISAISKGFIKGKLSMEEINPLLERNVKVFEILAKETGGKYTADQMQKMLQEGKLGRKAIHALLRGMGRDAQGAAKEQMKTWDGLVSNLEDTWTSMQARFMEHGAFDALKKELGDFVEWLNEKIDDGTLDDFAKTVSDTLIEALKNLKEMAKDVKPVLESIGSVMSWVSEKAGGYGNLAKFMGALYLGNKVLRNDKVQTLGGWGWSGAKWGYNKIFNRKKGGAGGLADGVAGALGATVGVTPVYVTNFPMGFGGGGGGGYGYDVIEDGRDKDKKTQKKNKPPRPKRGRGSVRSPVAAVAASAAAVPKVAAPVTTASSGVARSVGNGVKSLGRGASKAVPYLGTGLAVAEGVTVLMDDTTNTKEKSEAIGSIAGATAGAIVGQALIPIPVVGAAVGSYLGGWLGEWLGSEVGEYLSDPEPIKNELNGTINIAVKASDQLIATATQAKIQTNQQRDSLETAVQMGTLGMGGMW*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0018	cloud	direct	high	1892	0.999	GCA_002073475.2_00488
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	505467	505850	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	20119	20502	GCA_002073475_2_1_456	GCA_002073475_2_1_456	-	1830681	.	COG4518	Mu-like prophage FluMu protein gp41  [Mobilome: prophages, transposons]. 	MKLMLETGLMFGEEAQLEVTMRELTTGDLLDAEMAAERLVMTPEGEAVLAKSPALFGYELLRRQIASVGKINGPISMRQLRSLTTEDLNRISLYAQSWESAKAEQVVSRGRLDTADQETGKDLSAVS*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0019	cloud	direct	high	383	0.997	GCA_002073475.2_00489
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	505863	506219	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	20515	20871	GCA_002073475_2_1_457	GCA_002073475_2_1_457	-	1830681	.	pfam10618	Phage tail tube protein. This bacterial family of proteins contains phage tail tube proteins related to the Mu phage tail tube protein M. Bacteriophage Mu has an eicosahedral head and contractile tail. The tail is composed of an outer sheath and an inner tube.	MATQFQGSAIIRLNGKEWPSDNDGTLTPGGKERETVKGSRVYGFSEKPTEAMVECTVFNCAETDVMELQNITNATVEFETDIGQVYLLPGAWTVETGTLSADGKIKLKMASIECKRVQ*	mmseqs_cdd	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0020	cloud	direct	high	356	0.997	GCA_002073475.2_00490
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	506229	507692	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	20881	22344	GCA_002073475_2_1_458	GCA_002073475_2_1_458	-	1830681	.	PDB:5LI4_E	tail-component	MSISFNNIPSALRVPLTYIEFDNTKAVSGPPTALHKVLMLGTKLATGSAKAGEAVRVSAYAQAKTLFGRGSQLAEMVKTFKAHNSTLDLWVLPLDEAPSGAKATGSVQITGTATQAGTFSLMIAGNNYKTAVTSGDTADVVAGKLQKLIAADQDVPVVATVAGNTITLTCRFKGETGNEIDLRCNYYSGEAFPEGLKATITDMKNGAVNPDMSVAITGLGAEWWNYIINPFTDTESLNLLRADLVKRWGPLKQIDGICFMAKRGTHAEVTTFAEQRNDYLFSLLATHKAPQPAYLWASAYAAVVAGSLAIDPARPVQTLVMDLLPPSMSDRWDLPERNTLLYSGVSTYTVNAGSQPQVEAAITMYRKNAFGDNDESYLYVETIATLSYLRYAIRSRITQKFPRHKLANDGTRIGPGQAIVTPKIIRNELLALFTELEFAGLVEDFEQFNQTLFVERDSNNPCRVNVLSNENLVNQFRIYAHAIQFIL*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0021	cloud	direct	high	1463	0.999	GCA_002073475.2_00491
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	507692	507883	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	22344	22535	GCA_002073475_2_1_459	GCA_002073475_2_1_459	-	1830681	.	pfam10948	Protein of unknown function (DUF2635). This is a family of phage proteins with unknown function.	MPTFKIKPKTGLLIRDPETFELLSESGEDKPKISYWLNHLKNGDVELVTETTTKAKNSNKEQA*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0022	cloud	direct	high	191	0.995	GCA_002073475.2_00492
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	507896	508447	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	22548	23099	GCA_002073475_2_1_460	GCA_002073475_2_1_460	-	1830681	.	PFAM:PF08873.10	tail-completion-protein	MSVIAETNEALLAKIKALCGDYLREVDTHPGQWDDSSVRRLVRNPPAVYVAWLGQQPNNNPHTVTARWGVFVVAEVLNGQRRNAVGIYQIVETLTAGLHKQRIAPSGMFELQTVQNLWSDTQSGMGVAVYGMYFNAVQPLPDMTSDDTLCDFKIYDHTFNQDKDEHTIDGKTRLTVELPTQSD*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0023	cloud	direct	high	551	0.998	GCA_002073475.2_00493
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	508447	508872	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	23099	23524	GCA_002073475_2_1_461	GCA_002073475_2_1_461	-	1830681	.	CDD:cd08053	head-to-tail-adaptor	MVLYANRESLIKRYTLKVLEQIAWLPEAQSLDEAKVQEALEDASQTIDSYLGGRYVLPLKTVPAVLERHCCYIARYFLEKNRATDQARQDYEDTIRFLEKVASGAISLGLSDDDETVESENGAMMESAGSVWGRNTSKGFI*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0024	cloud	direct	high	425	0.998	GCA_002073475.2_00494
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	508875	509261	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	23527	23913	GCA_002073475_2_1_462	GCA_002073475_2_1_462	-	1830681	.	pfam17891	Mu-like prophage FluMu N-terminal domain. Structural analysis of HI1506 (also known as Mu-like prophage FluMu protein gp35) from Haemophilus influenzae show that HI1506 consists of two structured domains connected by an unstructured 30 amino acid loop. This entry is the N-terminal domain which comprises a three-stranded antiparallel beta-sheet packed against an alpha-helix.	MDKTFCVVVQNRIKEGYRRAGFSFHLGDNSLAAVSESQLAQLKADPRLVVQITETGSQEGGEGLSKEPAGSDEQKQLRADPPSTDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPADGEKSEA*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0025	cloud	direct	high	386	0.997	GCA_002073475.2_00495
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	509344	510270	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	23996	24922	GCA_002073475_2_1_463	GCA_002073475_2_1_463	-	1830681	.	PFAM:PF10124.8	major-capsid-subunit-gpT	MANVTPDLVKALFVGFGKNFKDGLAKAPSQYTEIATVVKSTTASNTYAWLGQMPGLTEWIGDRTLTAIQSHGYSIVNKKWANGVEIQRTDIEDDNVGVYSPLIEELGRAAGEKADELVFGALTAGFKTACYDGQYFFDTDHPVGANVDGTNQKSVSNITDDSTGVTEANAWYLLDCSRSLKPIIYQERKAPTPAQITDANDEKVFMKDVFTYGVDSRSNVGYGFWQMAHAVKGKLTAENLWKAIEAMRAVRGDGDKRLAIRPTHIVVPPSLAQAATKLLERELRAEDGVAVDNEFKRMNLKLIVGDYL*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0026	shell	direct	high	926	0.999	GCA_002073475.2_00496
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	510270	511337	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	24922	25989	GCA_002073475_2_1_464	GCA_002073475_2_1_464	-	1830681	.	pfam10123	Mu-like prophage I protein. Members of this family of proteins comprise various viral Mu-like prophage I proteins.	MKAEKTSLAVLTAQLTSPDGWQQLLPKGEFRSRDGSPTDVAHWFIDGTIAQNLIHKARQLNQDLLVDYDHETILKAKKGIDAGNVVAAGWFNADEIQWFDDETRQGLYIKPRWTPKAYQQIKDGEFAFLSAVFPYDENGTPLELRMAALTNDPGITGMQRLAVLSATLNPQENVKMPESLRKLLAKLGVEIAEGVELTEEQANTALNALETLQTDKTKADEQVATLSAKNTEVDLSQYVPKATYDAVMSQVAVLSAKTDDVEIDNHISKARNEGRAVEAEVEYLKQFGKQQGVAALSAMLEKRPQIAVLSAQQTQTTKVEKPVEKGTAVLSAADKEAAKLLGISEQDYAKELEAK*	mmseqs_cdd	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0027	cloud	direct	high	1067	0.999	GCA_002073475.2_00497
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	511569	512009	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	26221	26661	GCA_002073475_2_1_465	GCA_002073475_2_1_465	-	1830681	.	CDD:TIGR01635	phage-virion-morphogenesis-protein	MHIEYKFDTSTIQQKFKKLAQVMDGRDITRKVAGVLRQEAEKFFDLEQAPTGEKWEDLDEDYKKYRYAAGHTGKILQIRGGRGLAGSLSLDYGDNYALIGAAEEYGGFHQLGTTFMPARPFLGLGKDGVSEIKAILNRELSELTQE*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0028	cloud	direct	high	440	0.998	GCA_002073475.2_00498
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	512147	513496	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	26799	28148	GCA_002073475_2_1_466	GCA_002073475_2_1_466	-	1830681	.	PFAM:PF04233.13	minor-capsid-component	MPNDNNTPPDGNDIDMGYVLRLEPKLAVDYLKSKGVNITWNWYEQLESAHARAFTVAKATKAEVLDTIRWATEQAIANGTGEREYIKKLEPMLKELGWWGKAKDENGNEVQLGSPRRLRTILRTNKITAYHAARYAQQMENVDEQPYWRYVAVNDSRTRASHLALHGKIYRADDPIWQTMYPPNDWGCRCRVEALSEYAVQSRGLKISSSDGEMEMEEAVVGIDKDTGEEIRTTVSKIKTDQGEMKVGAGWNYNVGSAAFGTDVAVLRKLQQVKNRELRQQTIQAINNSEARHKAFADWVLANLGKRGASARYMSAGLVTTEIAEAVTEITQGGKNAELVLVMSEKRLAHANSDKHHEGGVGLTAEEYASISRIVANPSLVLWDTLEGHNNLIYINQERTIQVIVDVPNKHSIKPKEKVDAIINAYKVDMNNVKRQLSGGNYVLLKGKL*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0029	cloud	direct	high	1349	0.999	GCA_002073475.2_00499
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	513483	515045	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	28135	29697	GCA_002073475_2_1_467	GCA_002073475_2_1_467	-	1830681	.	PDB:5NGD_C	Portal-protein	MQSRILDIHGNPFRFEADMQTESESRLMPLQYHYSDHPASGLTPAKAARILRAAEQGDLVAQAELAEDMEEKDTHILSELSKRRGAITAVDWQIKPPRNATPEEQRDAEMLQEILEDAVWLDDCIFDATDAILKGFSSQEIEWEQGLVGGLKLIKNVHWRDPAWFMTPAYQRNSLRLRDGTPEGAEMQQFGWVKHVARAKTGYLSRIGLVRTLVWPFIFKNYSVRDFAEFLEIYGLPLRLGKYPEGATDKEKQTLLRAVMSIGHNAGGIIPRGMELEFEKAADGSDSTFMAMIEWAEKSASKAILGGTLTSQADGATSTNALGNVHNDVRLEIRNADLKRLAATLTRDLVYPLYALNCKSFNDARRIPRFEFDVAESEDLNAFADGLNKLVDIGFRIPKQWAHDKLQVPIATENEEVLAKSFQNPTAYMHSKADGKMAVLSVQPDPEDLLDNLEPTAEDYQAVIDPLLKPVVEALQKGGYEFAQEKLAILYAEMNDEELETLLTRAIFVSDLLGRANAKR*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0030	cloud	direct	high	1562	0.999	GCA_002073475.2_00500
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	515057	516583	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	29709	31235	GCA_002073475_2_1_468	GCA_002073475_2_1_468	-	1830681	.	PDB:4IEE_A	Large-Terminase	MQTLPDLIPFDPNALLLGYQKRWVADTSQLKIAEKSRRTGLTWAEAADDVMIASLAKSEGGSDVFYIGSNKEMAREFIDACAMWAAQFNRAAGQIQEELFNDEDKDILTYVIYFASGFKIKALSSNPKNLRGMQGVVCIDEAAFHEKLAEVLKAALALTMWGAKVRLISTHNGVDNLFNQLIQDSRAGRKSYSVHTITLDDACAEGLYQRICQVSKQLWTPEKEAAWKAGLLRETATEDDALEEYYCVPKASSGAYIPRPMIERAATEGKAKLRFECDAKFMEWTEDERTVITSEFCLTQLLPHLQALNPDRRHAFGVDFARSADLSVYAVCAVQPDTARHFDLTLEIKNCPYNQQKQIMLFMLANLPRLIGAAFDATGNGGYLAEAALIRYGSSMVEAVQLNEKWYREWMPKYKALYESGYIQIPKDEEIILDHGHIQVINGVPKIDKSRSKDKSGKRHGDSAVAYCMAVRASYMTGGEIDFIPLPDKHSDRSENDEFDDFISNWDW*	hallmark_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0031	cloud	direct	high	1526	0.999	GCA_002073475.2_00501
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	516583	517152	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	31235	31804	GCA_002073475_2_1_469	GCA_002073475_2_1_469	-	1830681	.	pfam11985	Protein of unknown function (DUF3486). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are about 190 amino acids in length.	MNDKTTRGRASKVDLLPPNIKTTLTMMLRDKQYSQAEILEEINNIIADSGLDESMQLSKTGLNRFASKMERFGKKIREAREVAEVWTKQLGEAPQSDIGKLLMEAVKTMAFDLTLNADEAVANDPKFLNQLALIANRIEQAQSISEERERKVRKEVAQQAADTAEKVISQAGLSADTVAQIKQQILGIA*	mmseqs_cdd	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0032	cloud	direct	high	569	0.998	GCA_002073475.2_00502
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	517175	517471	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	31827	32123	GCA_002073475_2_1_470	GCA_002073475_2_1_470	-	1830681	.	5DYM_A	PadR-family transcriptional regulator	MSFKELITQDQRLVVLRVLSEAGYDANESIINDGLDLYGHDISRDLVRTHLSWLEEQGLLTIERLKDGYMVASITQRGLDVAQGRVAVEGVKRPRPKI*	hhsuite_tools	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0033	cloud	direct	high	296	0.997	GCA_002073475.2_00503
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	517476	517805	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	32128	32457	GCA_002073475_2_1_471	GCA_002073475_2_1_471	-	1830681	.	pfam10805	Protein of unknown function (DUF2730). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	MISEFWEFVRSNFGVISTLIAIFIGAFWLKLDSKYAKKHDLSQLADIARSHDNRLATLESKVENLPTAVDVERLKTLLTDVKGDTKATSRQVDAMSHQVGLLLEAKLKE*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0034	cloud	direct	high	329	0.997	GCA_002073475.2_00504
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	517802	518029	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	32454	32681	GCA_002073475_2_1_472	GCA_002073475_2_1_472	-	1830681	.	TIGR02419	phage/conjugal plasmid C-4 type zinc finger protein, TraR family. Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions]	MADVLDQLNEREEALLQNILAPHLDTELSDDEVDAIAEAGRQCSECGLPIPTTRLRANPFAHRCVSCQQDWEEGR*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0035	cloud	direct	high	227	0.996	GCA_002073475.2_00505
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	518029	518166	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	32681	32818	GCA_002073475_2_1_473	GCA_002073475_2_1_473	-	1830681	.	.	hypothetical protein	MATSVINPSCAGFSLIKASRQDTTETLRQVAVHNATYRQICEEQP*	.	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0036	cloud	ambiguous	low	19	0.138	GCA_002073475.2_00506
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	518147	518401	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	32799	33053	GCA_002073475_2_1_474	GCA_002073475_2_1_474	-	1830681	.	pfam10883	Protein of unknown function (DUF2681). This family of proteins is found in bacteria. Proteins in this family are typically between 81 and 117 amino acids in length.	MMNLILAFSGVIALYGGYLYLRLRQSQKQAATLQKEKEQLQTQKTVAETKVKNYQVKQKNEENLISRSRTSLLERMHNDGDLRD*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0037	cloud	direct	high	254	0.996	GCA_002073475.2_00506
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	518398	518658	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	33050	33310	GCA_002073475_2_1_475	GCA_002073475_2_1_475	-	1830681	.	pfam10841	Protein of unknown function (DUF2644). This family of proteins with unknown function appear to be restricted to Pasteurellaceae.	MGFSELFTNADGRLSTTASIQFWGFVAATGVLLYSVYLDKPYVPEMFSTFLFACVGTAATKGVANALSQRREQGKEQGREQGREQE*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0038	cloud	direct	high	260	0.996	GCA_002073475.2_00507
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	518665	519210	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	33317	33862	GCA_002073475_2_1_476	GCA_002073475_2_1_476	-	1830681	.	PDB:1M0D_D	endodeoxyribonuclease-I	MSLPITKIVVHCSATRNGKSIKQPGKNAAQVIDGWHKQRGFKRQLSSQRAFNPHLSSIGYHFVIDVDGSVGTGRQVGEIGAHVKGHNQNSVGICLVGGITASGKNHGEYTEAQWQSLYKLLQELEAEHPKALICGHRDLSPDLNGDGVITPKEWLKDCPCFDVWSWLDSEQVVNLDHLYKE*	common_virus_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0039	cloud	direct	high	545	0.998	GCA_002073475.2_00508
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	519292	519798	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	33944	34450	GCA_002073475_2_1_477	GCA_002073475_2_1_477	-	1830681	.	.	hypothetical protein	MKLLKALAVLSLATISSHSFAVDGFQNVKFGASKTEVRNAYQKCQWQKDEYDLFCPNFTLGAIKDTGAYFYFIDDKFERIAINIPNVNIDGIGQALSEKYTLSSQPTQRELANPKPNNVYDFGFDKDTILIRYTYDNDMTEEIFLIYTTPDFNNKLQTKDAQSVKDQL*	.	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0040	cloud	direct	high	506	0.998	GCA_002073475.2_00509
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	519807	520241	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	34459	34893	GCA_002073475_2_1_478	GCA_002073475_2_1_478	-	1830681	.	COG5566	Transcriptional regulator, Middle operon regulator (Mor) family [Transcription]. 	MSQTLQQTGLFDDEHADIGALFDHLDQIPSVELEKRWPSLLVEVIEVMQAELLRQNFAEDKAKKTASKLVGVMAHYFGGKSFYLPAGDKIKEALRDAQIYQEFNGKNVPELIKKYRLSESTIYAILRNQRTLQRKRHQMDFNFS*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0041	cloud	direct	high	434	0.998	GCA_002073475.2_00510
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	520434	520988	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	35086	35640	GCA_002073475_2_1_479	GCA_002073475_2_1_479	-	1830681	.	.	hypothetical protein	MKLCRCPICHSDIHLEALIEDDAGRELLGKISQLTHGCAQPMVGYLGLFKPAKSNLNNARALKILSEVLDLYPCSLLLAQALSETVASLRKKRQQALQTGQKIEPLTNHNYLKSVYETQKPHFAVIRSGKNQSETVKAQQAEDKKVQDAILYVERFVQLGQEEFVKNSPEYQIWLNHKAQKQAL*	.	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0042	cloud	direct	high	554	0.998	GCA_002073475.2_00511
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	520985	521542	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	35637	36194	GCA_002073475_2_1_480	GCA_002073475_2_1_480	-	1830681	.	COG4382	Mu-like prophage protein gp16  [Mobilome: prophages, transposons]. 	MSEKAKLIQLIHIGKQQLNMDEFSYREMVKRLTNKTSSTKCTVVELLKILHEMQQKGAKVKHFAKRGTKPTAYSPATGEVKVKSEIAHKIRAVWIQMGKHGFLADPSEKALNSYMRKVMNKGKSVLALNVGALNSNDASRFLEILKKWHKRVMLKRLAEKYGCITSAETGYDELCLVFKNYQGVA*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0043	cloud	direct	high	557	0.998	GCA_002073475.2_00512
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	521716	522276	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	36368	36928	GCA_002073475_2_1_481	GCA_002073475_2_1_481	-	1830681	.	pfam17457	Family of unknown function (DUF5420). This is a domain of unknown function found in Gammaproteobacteria such as Haemophilus influenzae.	MNAIQFRYFKGVMTKEPLKTIIDTWYKLRAERDKKLTNIFNTIPFYESWLGDETSIFGIVCSYDNPARDEAVLTKGYRTEDYKGKCVVKPDRRYKVGKDFDKKLQAIRQILKEAPDFSSYSLKELGMYLLVGNFSRLYFSVSGVQDDIYIAKIPVKEQGNFGDDFLEIHECLTEIKESEFLSIQGL*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0044	cloud	direct	high	560	0.998	GCA_002073475.2_00513
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	522279	522452	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	36931	37104	GCA_002073475_2_1_482	GCA_002073475_2_1_482	-	1830681	.	.	hypothetical protein	MMTETRKNELENQLNQMIVMLKEAQKSLFKGQYTHAAIFVGNVSDQLPNMRMMLARG*	.	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0045	cloud	direct	high	173	0.994	GCA_002073475.2_00514
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	522452	522673	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	37104	37325	GCA_002073475_2_1_483	GCA_002073475_2_1_483	-	1830681	.	NF033650	ANR family transcriptional regulator. ANR family transcriptional regulators include the AggR-activated regulator Aar. The name ANR (AraC Negative Regulators) refers to an effect on, rather than homology to, certain AraC family transcriptional regulators.	MKTKRPHAKSVENFNRYRFYAEKAAKEEQAGNYEEAETHWDLAMLSASPENKEWAIRRRDFCQRMHQRPFEGE*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0046	cloud	direct	high	221	0.995	GCA_002073475.2_00515
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	522853	523146	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	37505	37798	GCA_002073475_2_1_484	GCA_002073475_2_1_484	-	1830681	.	.	hypothetical protein	MKLKQKLLTFPNVCLLLLVICSTLGLALVWFIPFVGQALIWNSLVFLCWVVYFEVRGLKDWGEHNLEQLVKMAEVSAAAAYKIKQHGGKVIMNGKEM*	.	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0047	cloud	direct	high	293	0.997	GCA_002073475.2_00516
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	523146	523307	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	37798	37959	GCA_002073475_2_1_485	GCA_002073475_2_1_485	-	1830681	.	6V7U_A	Quorum sensing anti-activator protein, Aqs1	MMDDLQDVSRLREAYQFYQKAKQDEDSIVCGCLNDAYEWLFSELKALFDEEEE*	hhsuite_tools	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0048	cloud	direct	high	161	0.994	GCA_002073475.2_00517
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	523304	523813	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	37956	38465	GCA_002073475_2_1_486	GCA_002073475_2_1_486	-	1830681	.	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam  [Mobilome: prophages, transposons]. 	MATKVKSQAKLRFVSVEQVQSAIKEIGDLSREHTRLATEMNDKIGATSEHYAPKLKALKEEIEPLQKAVQEYCEANRDELTEFGKTKTANFVTGEVQWRQRPPSVAIRGAEAVMEFLQRMGFDRFIRTRQEINKEALLNEPEVAKGIAGVTIKQGLEDFVIKPFEQDAR*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0049	cloud	direct	high	509	0.998	GCA_002073475.2_00518
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	523828	524145	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	38480	38797	GCA_002073475_2_1_487	GCA_002073475_2_1_487	-	1830681	.	.	hypothetical protein	MQKVYNKMAGEMMSPRNAVIHNQLAMLELATLECEALGIEVETVEWFDIGKPRLVVKDCSALRHLIKTGKAFNYGSEVKNGIRIYLNQMMVKGVKIIWKSDVTKH*	.	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0050	cloud	direct	high	317	0.997	GCA_002073475.2_00519
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	524154	525071	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	38806	39723	GCA_002073475_2_1_488	GCA_002073475_2_1_488	-	1830681	.	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase  [Mobilome: prophages, transposons]. 	MTLINKLKQHLSDSQITQAQLAREAGVNAGALSAYLNDNYKGNIADVEAKLAAYLEKKAVQAREFVEAPAFIETATSRQIFKTLEFAQIANCLATVYGMSGVGKTKAIQEFAKSHANVWLVTASPSRSSLSEILYEIALELGISDAPRRKGTLSRLIARKIKGTEGLLIVDEADHLPYEALEELRIMQEEAGIGLVLVGNDKVYTRMKGGISPSHEYARLWSRVAKNTSIQKTKKADTQAVAQAWGLETDEEALKVMQSITETGGGLRILTQTLRLAGMVAKGSGKLIDADLIIKARQELLGKGE*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0051	cloud	direct	high	917	0.999	GCA_002073475.2_00520
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	525105	525575	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	39757	40227	GCA_002073475_2_1_489	GCA_002073475_2_1_489	+	1830681	.	1MW5_A	HYPOTHETICAL PROTEIN HI1480	MSETDLLLKMVRQPVKLYSVATLFHEFSEVITKLEHSVQKEPTSLLSEENWHKQFLKFAQALPAHGSASWLNLDDALQAVVGNSRSAFLHQLIAKLKSRHLQVLELNKIGSEPLDLSNLPAPFYVLLPESFAARITLLVQDKALPYVRVSFEYWHA*	hhsuite_tools	hypothetical_protein	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0052	cloud	direct	high	470	0.998	GCA_002073475.2_00521
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	525508	525780	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	40160	40432	GCA_002073475_2_1_490	GCA_002073475_2_1_490	-	1830681	.	pfam09039	Mu DNA binding, I gamma subdomain. Members of this family are responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated.	MSNITLNENAMLYLKADYYRPEMPTFKACYFRLSKIAQEQGWGTLPNLAQTKALFKAAVPEIIWTREAFKRANTQKKHAHKATPYLEQVM*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0053	cloud	direct	high	272	0.996	GCA_002073475.2_00522
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	525837	527900	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	40489	42552	GCA_002073475_2_1_491	GCA_002073475_2_1_491	-	1830681	.	PDB:1BCO_A	Mu-Transposase	MDNQSLKTHYSVYELANLKLKTLPSAPKNIWEQAKRENWKSQKRQGRGGGLEYELASLPIEVQNELLLKTTPEQTAVALQKIEETRPLASNEVWQLWDEASAKAQEQAKIKLGTMFAVANLVESGVNVLDAFRLVCGKENAERLKNNEKLLSVGSLKNWWYRVKDAPRQDWLPLMLNNSGKSSKNVAEIDEAAWQFFKNFYYSREKPSLAHSYEVLKQAAQYNGWRIPSRSSLKRKMERDVPKTEEVFRREGQYALSRLYPSQVRTVAMLQAMEWINGDGYQHNVWVRFPDGEIKRPKTWLWQDVRTRKVLAARTDKSENTDTIRLSLLDVISRYGLPKHLTIDNTRAAANKKMTGGVKNRYRYQVNENEVQGIIPALGIELHWTSIQFGKGRGQAKPIERAFSHGGLGDYVDKHLLLRGAYAGANAYEKPDYDGKNGAEQPVDYATFLMALEQGIQQWNNVGNRLTEICAGKSSYAEAFERDWAVAEKRPISQSQMRLLLTLHEEVRLNQDGTFYLNAGKIGTNKNRYESLALIGTSHKRVVVRYDPANLHDKVWVYALTGEYLAEAEITEKAGFGDQMAGREHNKAMRNWVKHTEKAAKERAKAEEMELSNYAPAVEFEERFLEMLPEPVKAPQTQAEEVEYEEVLDFNTVRKVPKAVEVEAEEISEFNRDWEKGLELLKKSKGR*	common_virus_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0054	cloud	direct	high	2063	1.0	GCA_002073475.2_00523
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	527934	528203	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	42586	42855	GCA_002073475_2_1_492	GCA_002073475_2_1_492	-	1830681	.	COG3423	Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]. 	MSVLEKPKKTAEQDWHRADILAELKKNGWSLRSLAKEGQVSYNTLKTVLDKSYPKMERLVANAIGVPPEVIWAGRFAERNKRPTLQHKY*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0055	cloud	direct	high	269	0.996	GCA_002073475.2_00524
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	528431	529150	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	43083	43802	GCA_002073475_2_1_493	GCA_002073475_2_1_493	+	1830681	.	PDB:2FJR_A	Repressor-protein-CI	MQYQNQDNFPERIEYLVDKLNGPSEFARKTGVTLSTITRWRKGEADPSRSNLVKIAEVTGVSIEWLATGKIKEEKTTEEKPAGSLVSRAFERMQAMLEEGVSMIDSYSSINVSAGFGSFNEGITQPDGQEPYSDELLTSLGVKADNCAVFWANGNSMLPTINNYDQMLVDLSRKEIQGDRIYLVQNGESVWVKRVKMEWDGISLISDNKEEYPPISITGENAQNLQIIGQVVHIGHSLI*	common_virus_hmm	common_virus	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0056	cloud	direct	high	719	0.999	GCA_002073475.2_00525
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	529390	529737	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	44042	44389	GCA_002073475_2_1_494	GCA_002073475_2_1_494	+	1830681	.	TIGR01581	NifC-like ABC-type porter. This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.	MRSTRGIFSSFESGYRFASYTLELSPFKTLIKIEIPMCWKPLVCASVLAWSRAIGEFGATLMLAGATRFKTETLPMAVYLNISSGDFEIAIGASLWLLFISTCLLLVLRMINRAV*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0057	shell	direct	moderate	239	0.687	GCA_002073475.2_00526
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	CDS	529739	530338	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	44391	44990	GCA_002073475_2_1_495	GCA_002073475_2_1_495	+	1830681	.	COG3842	ABC-type Fe3+/spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]. 	MLIVQNLQTNILKSISFSIEKSECLSVVGESGSGKTTLLNAIAGYIDYSGSILWNNQVLENNPPWKRNFRYLNQRLYLFPHKTVRGNLILANPSASDAEQQILLSELKIDHLINRYPHQLSGGEQQRVALARALIYRPDLLLLDEPFSSLDWSSRKDIWKVLKNLIQTNEITTILVTHEPKEAEYFSGKQIQLYQGQLI*	mmseqs_cdd	nonviral_gene	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_CDS_0058	shell	direct	high	599	0.998	GCA_002073475.2_00527
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	574755	575528	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	1	774	GCA_002073475_2_1_551	GCA_002073475_2_1_551	-	1830681	.	PRK11161	fumarate/nitrate reduction transcriptional regulator Fnr. 	MKNFVAGAQSGRKIQSGGCAIHCQDCSISQLCIPFTLNEQELDQLDNIIERKKPIQKSQVLFKAGDSLNSIYAIRSGTIKSYTISESGEEQITSFHLPGDLVGFDAITQMQHPSFAQALETAMVCEIPFDILDDLAGKMPKLRQQILRLMSSEIKSDQEMILLLSKMNAEERLAAFIHNLSKRYSARGFSAREFRLTMTRGDIGNYLGLTVETISRLLGRFQKLGVISVQGKYITINDLNGLIELTGTNKTKITLVK*	mmseqs_cdd	nonviral_gene	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0001	persistent	direct	high	773	0.999	GCA_002073475.2_00582
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	575625	575717	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	871	963	GCA_002073475_2_1_552	GCA_002073475_2_1_552	+	1830681	.	.	hypothetical protein	MAAEKLTKKRLAQILIMLCILIIAFVWRYF*	.	hypothetical_protein	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0002	shell	direct	moderate	92	0.989	GCA_002073475.2_00583
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	576040	576954	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	1286	2200	GCA_002073475_2_1_553	GCA_002073475_2_1_553	+	1830681	.	PDB:1Z19_B	Integrase	MHRLRQCNMKWGAEEEKKIELQAQGLQPDTLFSDVIKRYLNKITPTKRGEKHEFNRLNRFLRHPVTDKYISDVSRRDIEDWIAERLESVKSESVRRELSTIGHIFKIALERWGYIQKSPMVGIQLPEKGKPRTQRVTEENINAIVAISEYVDTLKTAKARTAAAILFAVETAMRAGKICSLSWGNVNFEKRTAFLPMTKNGTSRTVPLTKNAIAILERLKVEIGDAGLCFDIKSSVLDATFRKLKKLAEREYLHFHDTRREALTRLSKKVDVMTLAKISGHKDISILQNVYYAPDMAEVAELLD*	common_virus_hmm	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0003	shell	direct	high	914	0.999	GCA_002073475.2_00585
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	576955	577239	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	2201	2485	GCA_002073475_2_1_554	GCA_002073475_2_1_554	-	1830681	.	.	hypothetical protein	MESIKLSQKAEEEIVNAARMAALSNLTEKSQNLITLEDIAIYFGRHYQTVAKIISKLPNFPKPVTPVTVDQQNSRPRYIAGEVVRWGRINAKPY*	.	hypothetical_protein	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0004	shell	direct	high	284	0.996	GCA_002073475.2_00586
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	577281	577400	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	2527	2646	GCA_002073475_2_1_555	GCA_002073475_2_1_555	-	1830681	.	.	hypothetical protein	MNKLIITLVCAFVVYMVHALNLNQDCDGKICHTEQTQQY*	.	hypothetical_protein	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0005	shell	direct	high	119	0.992	GCA_002073475.2_00587
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	577527	578102	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	2773	3348	GCA_002073475_2_1_556	GCA_002073475_2_1_556	-	1830681	.	COG3561	Phage anti-repressor protein  [Mobilome: prophages, transposons]. 	MTHLNLIPVFNGLIQNQPVQLCNARELHAFVESKQQYTDWIKNRINEYGFIQDEDYLVITERTNGRPRKEYHITLDMGKELGMVERNERGRQIRQYFIRCERTLKALQQPQQLALPEPEKFTHEFTEFEIETLVWLLIGHHQMNTLLGQLEKPLDAIGSNLHPAVYSYWKEYGRQYKDALPTIKRLMAPFK*	mmseqs_cdd	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0006	cloud	direct	high	575	0.998	GCA_002073475.2_00588
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	578255	578533	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	3501	3779	GCA_002073475_2_1_557	GCA_002073475_2_1_557	+	1830681	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MKCDARYAEKYRMRPISDELGMEIDGYLGVIRKVTPELYDVFVLTYIKRWEKQGIWRYLHISRREYFNRLKTVKTSLLLLLSTEGKQYLFIA*	phrogs_hmm	hypothetical_protein	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0007	shell	direct	high	278	0.996	GCA_002073475.2_00589
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	578564	578857	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	3810	4103	GCA_002073475_2_1_558	GCA_002073475_2_1_558	-	1830681	.	COG3636	DNA-binding prophage protein  [Mobilome: prophages, transposons]. 	MTEQLKDFDVAEHLTSEEEIQLYLNEILQEDNIELILSALGDIARARNMSQIARDAGISREGLYKALSGTGNPTFATVMKVMKALNLQFQVQQSRFA*	mmseqs_cdd	nonviral_gene	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0008	shell	direct	high	293	0.997	GCA_002073475.2_00590
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	578854	579153	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	4100	4399	GCA_002073475_2_1_559	GCA_002073475_2_1_559	-	1830681	.	TIGR02683	putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	MTIQIKTTLTFDSWLSKLKNLRAKAKINARIKRLQFGNFGDIKSVNDGIFELRIDEGQGYRVYLKNQNGVLVILLCGGDKSTQDKDIKQAKLLAQELGL*	mmseqs_cdd	nonviral_gene	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0009	shell	direct	high	299	0.997	GCA_002073475.2_00591
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	579514	580182	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	4760	5428	GCA_002073475_2_1_560	GCA_002073475_2_1_560	+	1830681	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MKNQIQFSTFNFKDLPVRVILDPKGEFWFCGTDVCHILGYTNSRKALQDHCKQGGVTKRYTPTKSADQEMTFINEPNLYRLIIKSRKPEAEPFEAWVFEEVLPQIRKTGKYQLQPQQLALPEPEKKFSFEFTEYELQQLVWLWFAFMRGIVTFQHIEKAFKALGSNMSGDIYGQAYEYLSVLRSTNQILNRITQEFNIDPMTNWRVLKHLRGFNPKAVKIDF*	common_virus_hmm	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0010	shell	direct	high	668	0.999	GCA_002073475.2_00593
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	580519	580875	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	5765	6121	GCA_002073475_2_1_561	GCA_002073475_2_1_561	+	1830681	.	TIGR01594	phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda. [Mobile and extrachromosomal element functions, Prophage functions]	MPIKEPDVWALIWSWLQTNLSSSSAQSAFWALFISLLRFGFMRKKPAIRYVLIDAAMCASIAGVAVPICTHLFGHTEYSSFLGTMIGFVGTEKIREFLFKFINRRIEKDDNDDFRSDI*	mmseqs_cdd	nonviral_gene	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0011	shell	direct	high	356	0.997	GCA_002073475.2_00595
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	580844	581446	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	6090	6692	GCA_002073475_2_1_562	GCA_002073475_2_1_562	+	1830681	.	PDB:3WH1_A	Chitinase-	MTMMISEVTFNKIFPHAVKGVYQAISAQIEKAGCVNKMQQAMFLAQCGHESGGFIRFKENLNYSWLGLSQTFRKYFPDPLTAKKYERKPELIANRIYANRLGNGDEKSGDGWKYRGRGLIQITGKDNYAAFRKWLGRDIEPEDVAGNLDLSVKTAVWYWKCYELAELNSVEKVTRRINGGLNGIDERCKLYRALMVTDND*	common_virus_hmm	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0012	shell	direct	high	602	0.998	GCA_002073475.2_00596
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	581439	581714	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	6685	6960	GCA_002073475_2_1_563	GCA_002073475_2_1_563	+	1830681	.	pfam10828	Protein of unknown function (DUF2570). This is a family of proteins with unknown function.	MTKYIYIALVGVVVVLFGALRYQSSVIDELEITTKQQEDTNKSLSLALQQERNDEIERIATENAESVKTIIKTQPCAHTRLPQSVLDRLHE*	mmseqs_cdd	nonviral_gene	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0013	cloud	direct	high	275	0.996	GCA_002073475.2_00597
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	581665	581907	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	6911	7153	GCA_002073475_2_1_564	GCA_002073475_2_1_564	+	1830681	.	PDB:5CYB_A	Lipoprotein	MLTLVCLSLFLTACTNKITTKPEYIYPPQAYTAPCVKTAFTGETYGDVVIQLVKVTAERDKCASQVDHLNKWINQAKGGK*	common_virus_hmm	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0014	cloud	ambiguous	low	51	0.21	GCA_002073475.2_00597
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	582035	582556	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	7281	7802	GCA_002073475_2_1_565	GCA_002073475_2_1_565	+	1830681	.	TIGR02681	phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein. [Mobile and extrachromosomal element functions, Prophage functions]	MNLQTIENFEQFLKVNDKQRIVTNSRHIATVFGKRHDNIIRDIKALVIEQDCGEFALLNFEETSYFDEWGRKQPMYQMTKNGFLLLVMGYRTQKAMKFKVEFIKAFDFMREKLQQEGYSLMHKYNELCIEHKAKKAFASLCGKGLREWKGDKPVLEATLKLFEDKMQIELPIK*	mmseqs_cdd	nonviral_gene	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0015	cloud	direct	high	521	0.998	GCA_002073475.2_00598
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	582566	583081	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	7812	8327	GCA_002073475_2_1_566	GCA_002073475_2_1_566	+	1830681	.	PFAM:PF03592.15	Terminase-small-subunit	MSDVKGKSTSGRGLTPKQEKFCQLYIELGNASEAYRQSYDCSKMTTEVINVKASELLNKNGKITVRVEELRQAHQQRHNLTLDNIIADLQEYRDICMGRKPLTITTVVKNAQEGTAQSVNTECFVFEPTGANKALELLGKHLGMFTNKVDVTTDGKPLPTVINVTFSDEPA*	hallmark_hmm	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0016	shell	direct	high	515	0.998	GCA_002073475.2_00599
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	583068	584411	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	8314	9657	GCA_002073475_2_1_567	GCA_002073475_2_1_567	+	1830681	.	PDB:4IDH_A	Large-Terminase	MSQLNIQFPTKFKPLFESIWRFIIFYGGRGSGKSFSIARALVLRAYQSPVRVLCCREIQKSISDSVIQMLADQIEMLSLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGIDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIEYAVDAHLKLGFTAKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYKTYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPSPNMADALVMCYAPTKPKSLLDL*	hallmark_hmm	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0017	shell	direct	high	1343	0.999	GCA_002073475.2_00600
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	584413	585723	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	9659	10969	GCA_002073475_2_1_568	GCA_002073475_2_1_568	+	1830681	.	PDB:8HDS_J	Portal-Protein	MNILDGIKSLALKLGSKQDQTYYARGLSLTDDLMQIEALWRDNWIANKVCIKRSEDMVRNWRDIFSNDLKSEQLDEFTKLERRLKLRETLTKALQWSSLYGAVGLLVVTDTINITSPLQPTERLKRLIILPKWKISPTGQRDDDVFSPNFGRYSEYTITGGTQSVSVHHSRLLIINANDAPLSDNDIWGVSDLEKIIDVLKRFDSASANVGDLIFESKIDIFKIAGLSDKISAGLENDVAHVISAVQSIKSATNSLLLDAENEYDRKELSFGGLKDLLTEFRNAVAGAADMPVTILFGQSVSGLASGDEDIQNYHESIHRLQETRLRPVLEVLDTLLCNELFGGQPDDWWFEFLPLTVVKQEQQVNMLNTFATAANTLIQNGVVNEYQVANELRESGLFANISADDIEEMKNANELARNFEEPEGESTQVQASEDE*	hallmark_hmm	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0018	shell	direct	high	1310	0.999	GCA_002073475.2_00601
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	585770	586990	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	11016	12236	GCA_002073475_2_1_569	GCA_002073475_2_1_569	+	1830681	.	PFAM:PF04233.13	Minor-capsid-component	MMTNDVERALQQPQGSFFMDDAKGFQAISAKALMKVLEKYEKSDRTSQAENIANGFVSRGDAQNHAEVSTNLKNQTGIDLSAYLRNSPNITEKVNALTAGNIQLIKSIRSQYLDKVQNAVMQAMVRGSLNKDLAAQIKDLGKTTEKRAMFIARDQSSKLNAALTQARHEEVGIKKYMWSASLDERVRESHAEKDGQIFEYANPPADTDHPGHDFNCRCVQIPVLDNNEQIVKNSPIVSQQEKQQMRSEWSDDFPDTIIDRKLGDATSHPLYENAKKGSIEDAYQLAKDLVTDDAVNKLKQLVGNKNAILIPVHAEEAVGQNMIPVAIATVLSKKLHIPVDLSIVQATKVSRTGGDGWHRLVYSPAFDGIVPKDKYAIILDDTQTQGGTLASLKGYIIKEKLLHLML*	hallmark_hmm	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0019	shell	direct	high	1220	0.999	GCA_002073475.2_00602
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	587057	587230	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	12303	12476	GCA_002073475_2_1_570	GCA_002073475_2_1_570	+	1830681	.	.	hypothetical protein	MANLKVGGKKNLATTSRGLQNGKQDSSLIHVRHLTKSEIQSLRESKRNAYHQMMALN*	.	hypothetical_protein	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	587478	587834	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	12724	13080	GCA_002073475_2_1_571	GCA_002073475_2_1_571	+	1830681	.	pfam10711	Hypothetical protein (DUF2513). This family is found in bacteria. The function is not known.	MKRNWDLIRSILLKLESQSEARGSLLPDGFTGFDSETVSYHFKLLQSAGLIEAIDYSSLNEMSLIARLLTWQGHELLDKIRNDTVWNSLKTTIKSKSLDLSLDAIKQVAQTIISQMLA*	mmseqs_cdd	nonviral_gene	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0021	cloud	direct	high	356	0.997	GCA_002073475.2_00603
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	587895	588995	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	13141	14241	GCA_002073475_2_1_572	GCA_002073475_2_1_572	+	1830681	.	PFAM:PF09979.8	head-maturation-protease	MKFTDKTTQADTQRTITKDGFLVVPATISKVGVFDYLATELGLKEDGIKKVARTEKSLFSDETIKSFENATLTVGHLKDGVNAKNWKQLSVGVVRNVKRVGDELTAEAWIYDEQAIKTVQEHGVEQLSCGYDCDIKPSTVQDADFEMSPMIGNHVAIVAKGRCGGSVKLADEDKTIMGKTAKILDAFLGAFGIKLSDEQKKQIEDEEKSGSEEGKEPKGEQPTKPKEKKSEPENKKEDDVEKEELEKSLKAKDEEIQQLKDAQAKRDAEVKQAAVLADAKTAFKEVNFADNATVREIQESAVVAQGIFTKDEAAKLSDEEISGAYQTAKVVVAKLADERKSLGNILLGDAEPKAAPKIDFNKTYNS*	phrogs_hmm	nonviral_gene	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0022	shell	direct	high	1100	0.999	GCA_002073475.2_00604
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	589493	590041	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	14739	15287	GCA_002073475_2_1_573	GCA_002073475_2_1_573	+	1830681	.	pfam03406	Phage tail fibre repeat. This repeat is found in the tail fibers of phage. For example protein K. The repeats are about 40 residues long.	MKAFLHHLQNEAKLIISLTYCVDGEFALNEIARATLQQYGIVQLSSATNSDSETEAATSKAVKTAYDKAVEAKTTADGKVGLNGNESINGEKTFENRIVAKRNIRISDSPHYASRGDYLNIGANNGDCWFEYKLSNQEIGTLRMHANGDLTYKRQKIYLKMDCWQAIHKRKLKVFTAKRKKR*	mmseqs_cdd	common_virus	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0023	shell	direct	moderate	509	0.927	GCA_002073475.2_00606
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	CDS	590074	590280	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	15320	15526	GCA_002073475_2_1_574	GCA_002073475_2_1_574	+	1830681	.	.	hypothetical protein	MLTQIARNRGVPFEILVEKVIEKSAQFAVVIGIIIGQRQAFEDRLLTFNPPEELTALEQEIEQWQFPT*	.	hypothetical_protein	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_CDS_0024	shell	direct	high	206	0.995	GCA_002073475.2_00607
GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote	cenote	tRNA	512065	512146	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C25	26717	26798	tRNA-Gly	tRNA-Gly	+	1830681	.	tRNAscan-SE score: 33.7	Gly	NA	tRNAscan-SE	.	C25	44990	485349	530339	GCA_002073475.2|CP020411.2@region_485350_530339@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote	cenote	tRNA	575817	575902	GCA_002073475.2	CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475.2_CP020411.2	GCA_002073475.2|CP020411.2	GCA_002073475_2_1	GCA_002073475_2_1@C27	1063	1148	tRNA-Leu	tRNA-Leu	+	1830681	.	tRNAscan-SE score: 61.6	Leu	NA	tRNAscan-SE	.	C27	15526	574755	590281	GCA_002073475.2|CP020411.2@region_574756_590281@tool_cenote_tRNA_0001	.	.	.	.	.	.