core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	306858	307457	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	1	600	GCA_002087975_1_3_274	GCA_002087975_1_3_274	-	749904	.	.	hypothetical protein	MFVKEEKPVNKIVEILRKTSSHLFKFHGEVAMHLFLNDDFILPSKIDICVERKKLLEIIRVIPEEFTIHYYDNQLYERLRESLSLSDVEHVKVFKNDTEVMTIFVYDVVNDEWLFRLDHHIRLPKNNIYFHSLSWNVDYIKPEIVLMYDLMSEQKYHQFSNYKAVIDSLSYYQFYILKLVVGEQRIKKAIVNSSTKKIS*	.	hypothetical_protein	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0001	persistent	direct	high	599	0.998	GCA_002087975.1_00298
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	307784	308656	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	927	1799	GCA_002087975_1_3_275	GCA_002087975_1_3_275	+	749904	.	.	hypothetical protein	MSLTIILSIIIIILIMAMVLNQKFMKDRVETEEYARNQLISKNSILSEENLSLKNQMLSTNNDVGQHAFKNAKRELRKILNRFKEEGRLRSYTIVPTSNLAVKHPLFEYARSFDFIIITDVGLINVDVKNWNQKTFYHFDVPDQHLEEGQPQYNTEKVVGHYISNRYHSQFKTTRSGVYTFIEILQDNRVIYEFYDHDPYDKAANNAKALKDKIENDYNFKIQSIGVIYFSDGSVNIIEGSDESDKYVDTVSTPISLEKVIEEAIDLSKHPLTDKQIEEISENFKQHMNN*	.	hypothetical_protein	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0002	persistent	direct	high	872	0.999	GCA_002087975.1_00299
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	309392	309913	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	2535	3056	GCA_002087975_1_3_276	GCA_002087975_1_3_276	-	749904	.	PDB:1RKN_A	Thermonuclease	MSSLLVVAMIGILVIIFQFVNHSGPFSGSESQHQSDNSNLNGKDKVYVKRVVDGDTFVAQKNGEEIKVRLIGVDTPETVKPNTPVQPYGKQASNYTKKYLTHQNVYLEYDKEKTDRYGRTLAYVWLKNGDMFNESLVKKGLAREKYFSPNGKYRDTFVNAQEEAKKRKLNIWS*	common_virus_hmm	common_virus	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0003	persistent	direct	high	521	0.998	GCA_002087975.1_00300
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	310072	310281	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	3215	3424	GCA_002087975_1_3_277	GCA_002087975_1_3_277	+	749904	.	.	hypothetical protein	MMLGVKEMDTSNENKITIIAVIVAIIVGVVLQIVFKLPLIVSLVGSVFLGMFVGFIVYLIQSFRRKKKN*	.	hypothetical_protein	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0004	persistent	direct	moderate	188	0.895	GCA_002087975.1_00301
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	310450	311052	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	3593	4195	GCA_002087975_1_3_278	GCA_002087975_1_3_278	-	749904	.	cd19930	phosphoacceptor receiver (REC) domain of DesR and similar proteins. This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MISLVITEDQLMLRKAMVQLIEMHEEMNVIKDFENGVEALEFIENNEPNVAILDIEIPGLTGLEILSYVRKKQLNTRIIIVTTFKRPGYFEKAVANDVDAYVLKERSIDDLIKTIYKVTKGEKEYSPSLMTSLFTESNPLTHKEQVVLREIGNGLSSKEIASKLYLSNGTVRNYTSTIIDKMNSDHRFEAWKKANEKGWI*	mmseqs_cdd	nonviral_gene	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0005	persistent	direct	high	602	0.998	GCA_002087975.1_00302
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	311049	312143	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	4192	5286	GCA_002087975_1_3_279	GCA_002087975_1_3_279	-	749904	.	COG4585	Signal transduction histidine kinase  [Signal transduction mechanisms]. 	MESRSWGVRIGELSTLIYLIFPILAIFVDKRGNFLTYLIVCTIFIISYVTMIIFYKYLSDSILYSLLVIHYLGIFYFVYSVNPMNSLFFFYSAFALPFIFNVRVVSKEFITFLIAMISCLILTYIFNPTFVVPLSAFYLVILIVAVGNFKNRDERIMKAKLEEKNKYINVLIAQQERNRISQDLHDTLGHVFASLTLKSELAVKLIDTNPKEAKNEMQAINQLSTEALNKVRLIIDDLKIQSFEDEISSLEHLLQNANLHFKFNNKSAAKSLNPAKQSILSMIFREAINNVIKHAHATEVIGELKVHEHQIILKIKDNGVGIENEDASNLKSIKERVDYLNGKLIVQSNNGTLIIVEIPRGDLL*	mmseqs_cdd	nonviral_gene	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0006	persistent	direct	high	1094	0.999	GCA_002087975.1_00303
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	312143	312874	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	5286	6017	GCA_002087975_1_3_280	GCA_002087975_1_3_280	-	749904	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MISTYFKIELKIIFRKKLYLVMSIFLPVVFYLLFTSILDMPEEAKLKFYKEYMYSMTVFSLMNFCLLSFPLDLIEERNQGWYKRLMVTPLSSFQYYLVKISKTMCQFLIAITIIFSVAHFYKDVHMTVFQWIFSALTLWIGVSLFLTLGLIIAQLNDIQKASSFANLLNITLAILGGLWFPVYTFPDWLQSISKHMPTYNLKLLAIDLAQNKGVNIEAFGYLVVYCIIFVSIALFMNKKGDVH*	mmseqs_cdd	nonviral_gene	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0007	persistent	direct	high	731	0.999	GCA_002087975.1_00304
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	312871	313746	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	6014	6889	GCA_002087975_1_3_281	GCA_002087975_1_3_281	-	749904	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MIELRHISKSFKEHKVLEDISIDIKNNCCTALIGKNGAGKSTLIDIIVGNNHYDSGQIADKSNLLNRHKMGILFQKTEFPKYIKVCELLHLYQSFYQTFISFHQFKEITQFSDRQMNQFACNLSGGQQRILDFALALVGKPELLILDEPTSAMDVEMRQHFWNVIDKLKMNNTTILYTSHYIEEVERMADQVMMLDKGKIQLDDSPENIKRNQSYSVIRIPCKYQELINQLKHKYEIELIKNRYEIKTTDVSDVLQLLKQYHVNFNKIEILKKSLLEVMFSNDLSKGGNYQ*	mmseqs_cdd	nonviral_gene	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0008	persistent	direct	high	875	0.999	GCA_002087975.1_00305
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	313924	315396	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	7067	8539	GCA_002087975_1_3_282	GCA_002087975_1_3_282	-	749904	.	PDB:2ZE9_A	Phospholipase-D	MNFGFLGTILTILLVVGFITNVVLAFVIIFLERDRRTASSTWAWLFVLFVLPVIGFILYLFLGRTVSKKKMEKNNGDELHAFEDLVQDQIDSFDKHNYGYINDQVIKHRDLIRMLLMKQDAFLTENNKIDLFTDGHKLYEKVLEDIYNAQDYIHLEYYTFELDGLGKRILDALETKLKEGLEVKLLYDDVGSKKVRLSKFKHFRALGGEVEAFFPSKVPLINFRMNNRNHRKIIIIDGQIGYVGGFNVGDDYLGLGKLGYWRDTHTRVQGECIDALQLRFILDWNSQSHRPQFKFDQKYFPKKNGDKGNAAIQIASSGPAFDLHQIEYGYTKMIMSAKKSIYLQSPYFIPDQSYINALKMAANSGVEVNLMIPCKPDHPFVYWATFSNAADLLDSGVNIYTYQNGFIHSKILMIDDEISSIGSANMDFRSFELNFEVNAFIYDEDIAKQLRQAFEKDIEQSKLLTKEVYDKRPLSIKFKEGLAKLISPIL*	common_virus_hmm	common_virus	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0009	persistent	direct	high	1472	0.999	GCA_002087975.1_00306
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	315454	315651	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	8597	8794	GCA_002087975_1_3_283	GCA_002087975_1_3_283	-	749904	.	.	hypothetical protein	MQQIKFKTLTEETLESLEKSVNSFLKSQEGNGYKLLNITIKQIEERAFPHNDEDFNAILTLVTEA*	.	hypothetical_protein	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0010	persistent	direct	high	197	0.995	GCA_002087975.1_00307
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	315965	316990	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	9108	10133	GCA_002087975_1_3_284	GCA_002087975_1_3_284	+	749904	.	COG2008	Threonine aldolase [Amino acid transport and metabolism]. 	MISFENDYLEGAHEKVLNRLVETNRIQAAGYGFDDFSAQAADKIRQRIDCPDATIRFLVGGTQTNQVVINSMLDSYEGVISADTGHVAVHEGGAIEFSGHKVLTIPSQEGKITAQDVENYIETFESDFKKEHMVYPGMVYISHPTEYGTLYTKEELQSLSRVCRRHQIPLFMDGARLGYGLMSNQTNVTIEDVAKYCDVFYIGGTKIGALCGEAIVFTKQNEPKNFTTIIKHHGALLAKGRLTGVQFLELFTDDLYFDISRHAIKMAEKVKKGFIDKGYQVYFDSPTNQQFFILSNDKIEELKQKVKFAVWEKYDNQHRVVRFATSWATTEENVNQLLELI*	mmseqs_cdd	nonviral_gene	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0011	persistent	direct	high	1025	0.999	GCA_002087975.1_00308
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	317060	317743	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	10203	10886	GCA_002087975_1_3_285	GCA_002087975_1_3_285	+	749904	.	pfam07553	Host cell surface-exposed lipoprotein. This is a family of lipoproteins that is involved in superinfection exclusion. Proteins in this family have been shown to act at the stage of DNA release from the phage head into the cell.	MQQERQSWYQKSWFIILTLLFIFPLGLFLMWRYAHWKNWLKLTVSSVYIISLVLTLLFQVSLLNENKTNQIEHASTMKEKSNINNVKTTKNKNMEKSTQTDKQNSVNLKQNTKDQNNNANDEAASPTSEQNAAIAQAKSYANTLPISKKSLYKQLTSEYGEKYPADIAQYAVDHISVDYKMNALRLAKSYVKNINISNQALYDQLVSENGEGFTPEEAQYAMNHLDR*	mmseqs_cdd	nonviral_gene	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0012	persistent	direct	high	683	0.999	GCA_002087975.1_00309
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	317994	318377	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	11137	11520	GCA_002087975_1_3_286	GCA_002087975_1_3_286	-	749904	.	PDB:6B0X_d	capsid-scaffolding-protein	MKDAIQEAEKLAKMNKDQKNQYELEKLLKENEELKAEKALSQMKNETRSMLNESGLENFDDQIVNILVNTDAEKTRKNVESFTNLLNQMVKSNVEKALRQDSPVSTQSNKMTKDEESDYLVSGRKCL*	hallmark_hmm	common_virus	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0013	shell	direct	high	383	0.997	GCA_002087975.1_00310
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	318374	318541	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	11517	11684	GCA_002087975_1_3_287	GCA_002087975_1_3_287	-	749904	.	PFAM:PF14265.5	head-scaffolding-protein	MENNQSNITEETKHNDNLETTYEQTQQKEKTFSQEEVSQMIKDRLARKKRNLNNV*	phrogs_hmm	hypothetical_protein	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0014	shell	direct	high	167	0.994	GCA_002087975.1_00311
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	318702	318896	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	11845	12039	GCA_002087975_1_3_288	GCA_002087975_1_3_288	-	749904	.	4A54_A	EDC3, MRNA DECAPPING COMPLEX SUBUNIT	MLIKDAYRKNVIVTLKNNEKFKGFVFDYENPLESDTGNYSLDLETDLGIYSIDESEIKSIKLIS*	hhsuite_tools	hypothetical_protein	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0015	shell	direct	high	194	0.995	GCA_002087975.1_00312
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	318898	319251	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	12041	12394	GCA_002087975_1_3_289	GCA_002087975_1_3_289	-	749904	.	pfam15542	Bacterial toxin 50. A predicted RNase toxin found in bacterial polymorphic toxin systems that is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, and contains two conserved histidine, a serine, two lysine, and a threonine residue and a HxVP motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7, and MuF-type secretion systems.	MIRSGKIKLDINPEKQNRHSLNHSLYLKNKNFALKNNERLPSYTTLSINELNRLVQQYSTSGKILINKNGFNHKKVINFERIIGKAFIDGKYIETTFGKVHYSKTDSHIIPFISKEK*	mmseqs_cdd	nonviral_gene	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0016	shell	direct	high	353	0.997	GCA_002087975.1_00313
GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote	cenote	CDS	319294	319941	GCA_002087975.1	NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975.1_NARC01000001.1	GCA_002087975.1|NARC01000001.1	GCA_002087975_1_3	GCA_002087975_1_3@C21	12437	13084	GCA_002087975_1_3_290	GCA_002087975_1_3_290	-	749904	.	PFAM:PF06152.10	minor-capsid-protein	MKVSREKLLKQQLDLIVKDSALDIHDEIENKLVDREVERQAHILGEHVKIDDTEVKAVVNSNFKGVNWSTRLCQDMAVVQKEVEKTTSNVLLRGRHPNEYVAKFKKQTNTTTYNASRLLVTESACVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHSLNGKVFKVKDMMPGVNAPPMHPWCRSTTVTHVGNWRDRFFTERKGKYQTENKES*	hallmark_hmm	common_virus	C21	13084	306858	319942	GCA_002087975.1|NARC01000001.1@region_306859_319942@tool_cenote_CDS_0017	shell	direct	high	647	0.998	GCA_002087975.1_00314