core_seqid core_source core_type core_start core_end core_bax_acc core_contig_acc core_bax_acc|contig_acc core_bax_acc_contig_acc cenote_input_name cenote_contig cenote_phage_region_id cenote_gene_start cenote_gene_stop cenote_gene_name original_cenote_gene_name cenote_gene_orient cenote_contig_length cenote_dtr_seq cenote_evidence_accession cenote_evidence_description cenote_translation cenote_Evidence_source cenote_vscore_category cenote_chunk_name cenote_chunk_length cenote_chunk_start cenote_chunk_stop UNI_lookup_ID pangenome_partition pangenome_method pangenome_confidence pangenome_overlap_length pangenome_overlap_fraction pangenome_matching_locus_tag GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 21282 22652 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 1 1371 GCA_002196965_1_1_28 GCA_002196965_1_1_28 + 55770 . COG2925 Exonuclease I [Replication, recombination and repair]. MHFAFYDLETTGISPAFDQPLQFAAILTDDAFREIERVNLRCRIAPHIIPSPWALAVTGLRPAQLVDPTLPSHFEFTQEIAALIERWSPATWTGFNSIHFDEEMLRQAFFQNLQPDIFATQFNGNTRLDVLTSLYVVWYRHPDLFEWPVDETGRVRFKLDLLAPLNGFVAHNAHDALGDVEATIHLGRLIAQRAPELWAEILSNRDKTAVQTRLASFQPMALVERFGGGPPRATIGCFCGTSASNANQAAFFDLDAADPADLLAADDATIFAAVDATPKIIRSLATNKSPALLAVHTPSPVQIQRAEVIAQSPDFRGRVGNALAARFPQDPEAPPPPVEKQIFGGFYSHADKALLTEFQRADWLRRQEIAATLTDARLRQLGRRLVALHAPALLSPKERGQFDAWLRERWFAPNAPDIEWTGLAKAQAALGELRAKAGVDQGLVGEIEAYLKRFEL* mmseqs_cdd nonviral_gene C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0001 cloud direct high 1370 0.999 GCA_002196965.1_00025 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 22853 23224 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 1572 1943 GCA_002196965_1_1_29 GCA_002196965_1_1_29 - 55770 . . hypothetical protein MDPDDEKRIAAKLAKIMAMLCVRNTQLETLHAGLTPITRTGDYSDVVVLDADGRRIPWTEVSRFDEDEMRALMRDIVNRLYTFHLHADEPKLQATIERWMGVADKWDEPEIDPRMISSSAKPL* . hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0002 cloud direct high 371 0.997 GCA_002196965.1_00026 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 23446 23703 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 2165 2422 GCA_002196965_1_1_30 GCA_002196965_1_1_30 - 55770 . . hypothetical protein MCGSLLIGALARPWARQMVALALAALTITLFILNFRRTAERAGRAAERIDQLERHDAVHRQMLDAAARRPRSRDDLLDRLRGGEF* . hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0003 cloud direct high 257 0.996 GCA_002196965.1_00027 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 23703 24377 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 2422 3096 GCA_002196965_1_1_31 GCA_002196965_1_1_31 - 55770 . PFAM:PF08291.10 Peptidase-M15 MPTTTYTHFRDVPESAWRWPSFSPAEIACRGTGAIKINTEAMDKLQSLRNRLGKPLIVRSGYRSPSHNRAVGGAPASKHMLGTAFDIAMSNHDPVAFAEAARAVGFLGFGTYPRSGFMHIDLGPARSWGEPFPVRRVPFVVETRPAREALAESRTLRGTGAAGVATVGAAGVEVAQEVLAEAQGAVLPLLPYLDTLRWLFIALALGGIAVAVWARVDDWKKGLR* common_virus_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0004 cloud direct high 674 0.999 GCA_002196965.1_00028 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 24448 24756 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 3167 3475 GCA_002196965_1_1_32 GCA_002196965_1_1_32 - 55770 . . hypothetical protein MTERTSLLHEVGQAFRENGLTAAITALVGGSLAVAATVTRKAFTNEAMLERLDRELHLERERIDKQRAEDRKADADRLERIETDIRAMRDVMFEAFQRGRTD* . hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0005 cloud direct high 308 0.997 GCA_002196965.1_00029 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 24789 26714 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 3508 5433 GCA_002196965_1_1_33 GCA_002196965_1_1_33 - 55770 . pfam10983 Protein of unknown function (DUF2793). This is a bacterial family of proteins with unknown function. MSDITTHLLLPYILASQAQKHVTHNEALRLLDAMVQLSVLDRTHTAPPASPTDGDRHIVASGATGLWTGWDLNIAFWVDGVWMRLVPRPGWLAWIADEAVFAVWNGSTWDPVGEPVDVSDAVFSLVNDADPTKKALFSLSGISTGTTRTFALPNTSSELAILAGTQTFTGNKTFSGTLTASGTVTVSAAAATIGTATTTATYGMGTGATTSGVTKTVNLGTGGASGSTTILNIGSATAGSGGTTVVNTPTVTFANAVTQVGMPQANLTAQLLGLGGATADSYNRLSMNTPAVLINNAGAGIEATVNKAAAGNDAAFAFKTGFSARALIGLLGNDDFSFKVSPNGSTFFDAIRIDRSSGRVELPEPMVMPALAAAPDPPPAGKLAVYARDRAGAGWLDVQRPSGRFFPLQPHFGVNRIATWAPSTSTTVNTNGMPRTAVGTVATPTLTTTGLADSMRRWRVTSAATANAVAEERSAGWVCWRGNADGLGGWNYVNRLSLTTVQATGMGFFGLYGSVAALATTLTLATVLNCIGIGFQRGTHTNWQLVHNDGAGAPTLIDLGASFPVASMTNVLTLYIAAAPNGADIGVRVVEEVSGAAVEFTITTDMPAATQLLSPRNYMNTGATAAAVAYDCAGVYVETDY* mmseqs_cdd common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0006 cloud direct high 1925 0.999 GCA_002196965.1_00030 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 26725 30696 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 5444 9415 GCA_002196965_1_1_34 GCA_002196965_1_1_34 - 55770 . PFAM:PF13550.5 tail-protein MATLVLGAVGSAIGGAFGGAILGFSGAAIGGFIGSTIGSVVDNWIVSSLAPAQRIEGARLDSLRITSSTEGAVIPRLFGRMRIGGNIIWATDFREEVNTTSQGGGKGSGPKVTTTEYLYFASFAVALCEGEITGIGRVWADGKPMDMTGVTWRWYPGDEIQSPDPFIAAKMGAASTPAYRGTAYVVFEELNLSAFGNRLPQISFEVFWPLADPDTAEGLVKAVTMIPASGEFTYATAPVKKTSGSGGATVAENLNAITDTADIVVALDRLQSLAPAVESVSLVVAWFGNDLRAGSCKVKPGVEVASKATTPANWSVNGVSRASAHLVSHDAEDRPVYGGTPADFAVVQAIQEMKARGLRVTFYPFILMDVPPGNTKPNPYSANAATSGQPTFPWRGRITCSPAAGFLGSVDKTATAATQVAALFGTATPASFSVSGTTVGWTGPVGEWSLRRMILHYAHLCKAAGGVDAFLIGSEMPGLTTIRSGASTYPAVSAFKSLAADVRSILGAGPKIGYAADWSEYFGHHPADGSGDVFFHLDPLWSDANINFIGIDNYMPLSDWRDGFDHADAALAPAIYDRDYLQINITGGEGFDWFYASALDRTAQTRTPITDGSAAKPWVFRFKDLRAWWQNPHFNRPGGVESGTPTAWVPQSKPIWFTELGCPAIDRGTNQPNVFFDPKSSESFTPYFSRGWRDDAIQRAYLEASYLFWGVAANNPTSSVYGNRMVHVPECAAWTWDARPYPFFPGLTEVWTDGPNWRLGHWLTGRLGGVSLAALVRHLCLRAGMPEELIDVSGLWGAVEGYVISALEAPRASISTLARHFGFDAVESEGRIKFLMRGRIAGLTITPDSMVAPASAQGDVMELTRAQETELPQALKWQVARADEDYDAAQVEARRITVDTTRIASESFPMAIPPEEAERRCRRALMEAWVGRESAVFRLPPSRLALDPCDVILLDHNGRLTELRLVSIADSDLRSIDAVRQDRAVYDLPPGEPRPASLSTPTVFGAPDIVLLDLPQLREDQPAHRPLVAAHAKPWPGEVAVYRSAATDGFALLTTFGTRARMGVLAADFYAGPVSRFDLGNALVVDLNSGTLESVTDITLLGGANALAVETGAGQWEIVQAGVAELIAPGRYRLTRLLRGQRGTEGAIVSMVPTGARVVVLDTAVTPLPISEADLGLPWNWRIGPASRPVSDETFVATTFTPEGAGLRPFSVAHVEQPWRIARSPGDLTIRWTRRSRSLAADTWGAGDVPLAEDSEAYEVEIRDGSTVKQTLTTTTTSVLYTAAQQSSDWGAPLGPGQSLAIRIYQLSALIGRGAARSVTLTF* common_virus_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0007 cloud direct high 3971 1.0 GCA_002196965.1_00031 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 30708 31151 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 9427 9870 GCA_002196965_1_1_35 GCA_002196965_1_1_35 - 55770 . TIGR02219 putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by pfam00877 and by Anantharaman and Aravind (). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions] MITADPALVITTALSWLGTPYHDQASLRGVGCDCLGLARGIWREMVGNEPFPIPPYSRDWGETGPREVLAEGARQMMPEIMPTEVGPGTLILFRMAPRAIAKHVGILTTQNQFIHAYERLGVVEETLTTAWRRRIAFAFLFPHPSSI* mmseqs_cdd nonviral_gene C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0008 cloud direct moderate 312 0.703 GCA_002196965.1_00032 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 31148 32032 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 9867 10751 GCA_002196965_1_1_36 GCA_002196965_1_1_36 - 55770 . PFAM:PF05100.11 Minor-tail-protein MKNLSPALQTHLDDGTTTLSWCWRISRADGMALGFTDHDRALSFDSTDFEPESGFAASEIRAGSDLAVDAQDATGVLTSDRITETDILDGRWDNAAVELWRVNWADTSQRVLLRRGAVGQIRRGRMAFVAEVRSLAHVLGQTVGRTFQAGCDAALGDTRCGIDLENAIYKGTGVVTDLLRDRAFMASGLSGFDAGWFTSGTLTWTSGANAGRVAEVLSHGVDGSIASLTLLEAPVRAIAEGDSFVARAGCDKRLATCSAKFANVANFRGFPNIPGQDAVLRYASQDGGHEGNVL* hallmark_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0009 cloud direct high 884 0.999 GCA_002196965.1_00033 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 32029 32655 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 10748 11374 GCA_002196965_1_1_37 GCA_002196965_1_1_37 - 55770 . PFAM:PF09343.9 glycoside-hydrolase MAFHEVRFPDNISRGARGGPERRTQVVELASGDEERNASWANSRRRYDVAYGIRRADDLAAVVAFFEARNGRLHGFRYKDWADYKSALPSQGITSTDQQIGTGTGSLQTFQLAKRYTSGPQTWVRTIAKPVTGTVRVALGMVEQLSGWTLDAPTGVITFTTAPANGVIVRAGFEFDVPVRFDSDTLDVTLDFERLGSITAIPLLEIRR* phrogs_hmm nonviral_gene C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0010 cloud direct high 626 0.998 GCA_002196965.1_00034 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 32655 35123 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 11374 13842 GCA_002196965_1_1_38 GCA_002196965_1_1_38 - 55770 . Uniprot:A0A0P9JG44_PSESX tail-tape-measure-protein- MAEKRVSVRLVAEGGRQVRAELEGVGEAGAKGLGRLSREMELANTRLAGFARRAGIAMSAAAAAATASLGLIVRSTAESAAQIRQFAQVANATPEALQRWSAGARTVGIEQEKLADILKDVNDRVGDFLQTGGGPMADFFESVAPRVGVTADQFARLSGPEALQLYVDTLERAGLSQQEMTFHLEAMASDATRLLPLLRNGGAEMARLGDQASDLGAVLDTDAIEALRRTQVALGTMSLVFEGLRNRIAVAVAPSVEALANAFVSLASDGGILRTAIDALIGNLGRLASYAATFAAVMAGRWIAGLAAAALSVRGLATALVILRGALIRTGIGALIVGAGELVYQFSQLVARVGGVGEAFRLLGDLAREVWSRIGLSLDAAFANMAAGWERLKAAGLSALEGTIGGVVSFGDRTAAIFQGAYDAAVAIWGSLPGAIGDFAFQAANGLISGIEAMLNGVVTRINNFINGLNAALALLPEWATGEGGVRIGTLDPVELSRIGNPFEGAATAAGAAAADAFSAALSRTYLEPPDLGLGAMTDDARARADGYREAAGMLADAAGRPLASWQALKDAMTGTGAEAEAALADAAGSADALTAGLNNTATAADGAGSAARNAGAAAAEGAETALTGWAAVTAALADYAAKARDIGGDIGSTLVSAFTSAENAVADFVKTGKLDFRDLVTSMIADLAKLAARRFILGSIANALSGALGGAGGIFANILHAGGMVGAPGPGRMVPALAFANAPRMHAGGWAGIKPDEVPAILQRGERVLSRREAAGYGQGQGSAPNISVTINARDAESFRQSRTQVAADIARAVSLGRRGM* hallmark_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0011 cloud direct high 2468 1.0 GCA_002196965.1_00035 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 35116 35283 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 13835 14002 GCA_002196965_1_1_39 GCA_002196965_1_1_39 - 55770 . . hypothetical protein MRVIPGAVLGWDMGAALAMARALGIDALIAAELLPEIEAVMVRKLNEQMEGGRDG* . hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0012 cloud direct high 167 0.994 GCA_002196965.1_00036 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 35346 35801 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 14065 14520 GCA_002196965_1_1_40 GCA_002196965_1_1_40 - 55770 . PFAM:PF08809.10 Tail-assembly-chaperone MIRLNLTATPEWLDLAPGLRLLVGPLTTALMVSARADLAVETLPEGATQEEMALAMAKSVARHAVLDWEGVGDGAGNIIPVSPEGIDALLEIWPVFEAFQTQYVARGLLLDAEKNVSAPSPTGPSAGATGIARPAHPARAAGASAPTAPQD* phrogs_hmm hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0013 cloud direct high 455 0.998 GCA_002196965.1_00037 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 35804 36742 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 14523 15461 GCA_002196965_1_1_41 GCA_002196965_1_1_41 - 55770 . PDB:5NGJ_B Tail-tube-protein MARAQGARAQMALAYETVYGTPPVSGFRLMPFARATLGSEQPLLESELLGYGRDPLAPIKDAVTADGEVVIPIDVEAFGFWLKAAFGQPVTTGTTPKTHTFQSGNWILPSMAIETAMPEVPRFAMYSGCVLDQLSWQMQRSGLLTATARLVAQGETIAAATAAGTPTALSLQRFGHFNGTVKRNGTALGNVVSAEITYSNNLDRIETIRGDGRIDGADPTMAALTGRIEVRFSDSTLVTQAIDGSPCELEFVYSLSANASFTFTAHAVYLPIPRIEIAGPQGVQASFDWQAAKATSPARMCTAVLVNTLAGY* hallmark_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0014 cloud direct high 938 0.999 GCA_002196965.1_00038 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 36768 37190 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 15487 15909 GCA_002196965_1_1_42 GCA_002196965_1_1_42 - 55770 . PDB:3FZ2_G tail-completion-protein MTTTRESVLAALRARLQPLAALTLRDEVLPERIPAAGLIILRDGQPGEPEVTLSPLRYHYQHRAELEVVVQAPNGRASAFDTLIASIGTALETDRTLGGLCDWVEPDAPASVDLPIEGAAALKAAVITVVLHYTTTGPLA* hallmark_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0015 cloud direct high 422 0.998 GCA_002196965.1_00039 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 37427 38296 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 16146 17015 GCA_002196965_1_1_43 GCA_002196965_1_1_43 - 55770 . 4NQF_A Nucleotidyltransferase MEITQQQALRNNVVYDMFVDSADQNYVVARWCFQQNLALDFLWNATHCLEKMMKAVLLLNGRSGLKPASGQPPYGHDLERLFPEVSTLAGDLLPDLLIRPSEIDMHWRVESTQQFIARISSNGDANNRYQIYGFVLHGEDLYKFDRVLYAIRRLCCPLDYYLFGNVRHGQPRFTFRDQLSRQADYMPHMAGSRFAKLTNSKSSPELRHAALNHNLIFAPDYDHGDLQCGSSALNPVLGRRILLADEQGATGERAAEVVALANWVIESISLPKSVRDQLRDARDRLAARV* hhsuite_tools hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0016 cloud direct high 869 0.999 GCA_002196965.1_00040 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 38448 39074 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 17167 17793 GCA_002196965_1_1_44 GCA_002196965_1_1_44 - 55770 . pfam20039 Family of unknown function (DUF6441). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 210 amino acids in length. MKLNIEFNPDIVALMKAEVAAGEKAVSAAMREAGTSLKSAWRGQITGAGLGTRLGNSIRLASFPKSGDSLNAAALVWSNAPVIIGAHDTGPLIRSRDGFWLAIPTPAAGKSTKGGRITPGEWERRTGLRLRFVYRRRGPSMLVAEGRLNSKGRAVASRSKTGRGVATVPIFLLVPQVKLRKRLDLARDAERAVDGVPGLIVAKWVEGN* mmseqs_cdd nonviral_gene C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0017 cloud direct high 626 0.998 GCA_002196965.1_00041 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 39071 39382 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 17790 18101 GCA_002196965_1_1_45 GCA_002196965_1_1_45 - 55770 . PFAM:PF05354.10 head-closure-Hc1 MSVFATAIDNLFADPNIARDATYIADGGAPQLIRVVLRRADDITDFGAARVWSETTRIDLRVVEVPNPRPGDRIEINGEAFVIQGEPVRDRERLVWTLDLRPA* phrogs_hmm hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0018 cloud direct high 311 0.997 GCA_002196965.1_00042 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 39388 40410 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 18107 19129 GCA_002196965_1_1_46 GCA_002196965_1_1_46 - 55770 . PDB:3BQW_A Major-capsid-protein MTITRNPFDAGGYSLAEMTQAINILPNLYTRLGQIGLFRFEGVSQRSIVIEQREGVLSLLPSVPLGAPATVGNREARSMRSFALPWIPHDDVILPADIQGMPALGLSDAADPLVEVMNRKLTLMRRKHAQTREYMEMNALRGIVKDGAGTTLYNYFTEFGLEMISVDFVFGTAGTNVQGKVRTVLRAIEDNLKGETMTTAHALVSSEFFDKLISHPKTEDAYKFFSATGGQPLREDMRRAFPFAGILFEEYNGSVTLSNGTSERLIPTGEGIAFPMGTFDTFTTYGGPANLLETANTIGLPLYARQMMDAKGRWIDLMTEASILPVNKRPRLAIRLHSGN* hallmark_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0019 cloud direct high 1022 0.999 GCA_002196965.1_00043 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 40465 40845 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 19184 19564 GCA_002196965_1_1_47 GCA_002196965_1_1_47 - 55770 . PDB:1TCZ_D Head-decoration-protein MTVLYQPATMGDVLKYEVNPNFTRETVTLLAGTAYPVGSVLGRITASGKYKLATSGGSDGAQTAGAVLLYAVDATLADAVGIVVARGPSIVSRASLAYDATVDDAPKITTKLGQLAAIGIIARDTA* hallmark_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0020 cloud direct high 380 0.997 GCA_002196965.1_00044 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 40933 42381 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 19652 21100 GCA_002196965_1_1_48 GCA_002196965_1_1_48 - 55770 . cd07022 Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. MLHARIAARAFNTPLLVEPSKATAFLSGLGRRILGRRVELADSGDGFENTVPLPARASILAGGLTESFRQHGDAPYPVVDRIAVIEISGVLIHRGGWIGQSSGQTSYEGIAAQIEAAAEDPAVRGLALEIDSFGGEVAGVFDLADHIRAIRGSKPVWAFVAEHAFSAGYALASQADRILLPRTGALGSIGVVVLHADLSGQLDQDGVRVTLVHSGQHKVDGNPYQPLPEAVRDDIQREIDVLRFLFAETVAAGRAGRLSQEAALATEAATFRGVDAVAAGLADEVTDLARGFAAFRQMLTRTPILSPTRSHRVAATKSRTSTHPRQEVIMATENDPDDSPQDTEIGVTDTEDGETDAADDVPATPVPAPTAPDAPAAAAPAPEQTATQTNNLAELSVQLREAAAEITEIAAQAGRLGITIDAAKALRDGTAPEALRKLVLERASAAADARDIVAAPPSLVLPLAKESPIVAAAKRAAASPRG* mmseqs_cdd common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0021 cloud direct high 1448 0.999 GCA_002196965.1_00045 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 42381 43880 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 21100 22599 GCA_002196965_1_1_49 GCA_002196965_1_1_49 - 55770 . PFAM:PF05136.12 Portal-Protein MGGAMNWRQRLGAFIGGFDAGQHHRRLRGFRATRAHVNALIAAAGPDITARARWLVRNNGYAVNAVESWAANTVGDGIKPISKIVDAARKEELQRLWLAWTDDADAEGLTDFYGLQRRAAREVFMAGEVFFRIRMRRPGDGLSVPLQLQMLPAEMLPLEQTGTAANGNVIRQGIEFDRIGRRVAYHFLRRHPGDSTDPGLAGEIVRVPAAEVIHVIDPVEGGQLRGVSKLAPAIVKLFLLDQYDDAELDRKKVAAMYAMFVTSPAPENPLAPPEDEDGPAGVEISPGQVVRLDPGEDVTVGQPADSGATYEPFQYRTLLQISAALGIPYPYIANDMVKGNFSNSRLALIEFRRRVSAWQHSVMVFQLCRPVYARWMDAAVLSGALILPGYEANRSRLLTADWLPTKWDWVDPLKDANAEIAQIEAGLKSRTQAIAERGYDAEQVDREIAAERTRERLLGLDFRRPGSPAQGVQAVPQGEDQADAIDDAEDHPRKDEDQP* hallmark_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0022 cloud direct high 1499 0.999 GCA_002196965.1_00046 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 43880 44089 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 22599 22808 GCA_002196965_1_1_50 GCA_002196965_1_1_50 - 55770 . PFAM:PF02831.14 head-tail-adaptor-Ad1 MTLDQLKSRHSALLAARYSGTRSVSYDGKTVNYGSDAELAAAIGDIERRIAKLERGAGRVLRPYAVKDL* phrogs_hmm hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0023 cloud direct high 209 0.995 GCA_002196965.1_00047 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 44100 46127 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 22819 24846 GCA_002196965_1_1_51 GCA_002196965_1_1_51 - 55770 . CDD:pfam05876 Large-Terminase MSESSSTPWPTSGSRLNEGEHNNDLTEGLDLGFDGAEDVLRAWRRGMRPDADLTVSEWADAHRWLSSRAAAEPGRYRTARAPYLRAIMDALSPSHPAQRISFMKAAQVGATEAGNNWIGFVIHHAPGPMLAVLPTVEMAKRTSRGRIDPLIEDSPALKERVSPARSRDAGNSMLSKEFPGGILVLTGANSATGLRSMPARYVFLDEVDAYPASADEEGDPVTLAEARTTTFAHRRKVFMVSTPTVRGLSRIEREFEASDQRRYFVPCPHCGHRQWLQFERLRWGKGKPETAMYHCEGCEKPIAEHHKTQMLANGEWRATAVSANPHAIGFHLSALYSPIGWKSWEQIARDWLAAQGSDEMLRAARNTLLGETWIESGEAPEWQRLADRRFAFPAQIPACGLFLTAGADVQKDRIEVDIWAWGRGMTSWLVDHIVIPGGPDDPACWDRLTALLGQTWVHEHGAVMTLAKLAIDTGYESAAVYAWARKQGIAQVAPVKGLEGFNRATPASGPTYVDATVNGRKLKRGARLWTVATATFKAETYRHLRIERPSEQDTPVPAGTIHLPDWADTEWLKQLVAEQLVTIRDKRGYARQEWQKMRERNEALDARVYARAAAWILGADRFDERMWQQLEKQAGVETAAVPMDAAPEKPTAPQAGQVTAPRRRGWKISTPRYME* hallmark_hmm common_virus C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0024 cloud direct high 2027 1.0 GCA_002196965.1_00048 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 46075 46644 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 24794 25363 GCA_002196965_1_1_52 GCA_002196965_1_1_52 - 55770 . PFAM:PF13591.5 terminase-small-subunit MEGMSERAYSAHSGLSRGAVQKARKNGRLVLFGDGSINAAASDARRGVMTDPDQQMRSRGGYGAGPDGPGMGGSGVSGPGDSTSYLKARTALTVYQAQERQLSIQRKKGVLIDRARAETLVFRLARQERDTWVTWPTRVAALMAAQLSAEMEKASGVPVTIETANLQRVLETHVREQLDALADLRVSLE* phrogs_hmm hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0025 cloud direct high 569 0.998 GCA_002196965.1_00049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 46787 46999 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 25506 25718 GCA_002196965_1_1_53 GCA_002196965_1_1_53 + 55770 . . hypothetical protein MTIAIPSDTTRIFIDRARFVQAMSTATLQRHLNDQSLNAEVFEMAGRVGIDCLTIELADVVPVLKQHGLI* . hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0026 cloud direct high 212 0.995 GCA_002196965.1_00050 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 47034 47255 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 25753 25974 GCA_002196965_1_1_54 GCA_002196965_1_1_54 + 55770 . . hypothetical protein MPRCTKTDPNAQRDALILEIAQRQFRLETLETRNWDRLDFHDVAVWAIRAALEEAFEAGRRAGRVKTELRAAS* . hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0027 cloud direct high 221 0.995 GCA_002196965.1_00051 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 47252 47557 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 25971 26276 GCA_002196965_1_1_55 GCA_002196965_1_1_55 + 55770 . . hypothetical protein MSTRAQIAIEVGPGEWAHVYSHYDGYPEHMLPSLAPWTPEDILAAIEIRQVSAEGIAAFERPRDPVILPRPTCQFCHLYIWQDGGWIELDRETHAPEGATP* . hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0028 cloud direct high 305 0.997 GCA_002196965.1_00052 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 47554 47910 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 26273 26629 GCA_002196965_1_1_56 GCA_002196965_1_1_56 + 55770 . . hypothetical protein MIPNCLSEGETLADLARRECAIGFDLRFCRSVAVSEHDLDTETCDPTEAEFATLYALTDLGEAIAIHDANLTSAGADEVAAIARALFVAIVNARRDPPDAAQRHEAEQAALTDPDRIA* . hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0029 cloud direct high 356 0.997 GCA_002196965.1_00053 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 48028 48426 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 26747 27145 GCA_002196965_1_1_57 GCA_002196965_1_1_57 + 55770 . . hypothetical protein MTHPILPSRNPDHGFFGTLTTCPQRDRRSVEVWVLASTLIATAIRANSEDEMIGIRDFLDGRMGRHFADDVVGNMVGCNIDSETAIKSSIRTWQEWRISRQLERDEGIPAGLPYLTGWVQHFAVAAAMAESD* . hypothetical_protein C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0030 cloud direct high 398 0.997 GCA_002196965.1_00054 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote cenote CDS 48464 49048 GCA_002196965.1 NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965.1_NIPZ01000001.1 GCA_002196965.1|NIPZ01000001.1 GCA_002196965_1_1 GCA_002196965_1_1@C1 27183 27767 GCA_002196965_1_1_58 GCA_002196965_1_1_58 + 55770 . pfam11994 Protein of unknown function (DUF3489). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important. MPKLTDTQTVVLSRAATRPCNLAMPLPEGLHGAAAQKAVTAMITRGWLEEVEANLRRGEPMWRETGDGHGTTLIATEAGLQAIGIEPVAASAVSSARKGKPQKDAEAVPTTGETDAPKPVAIRVGTKQAQIIAMLQRPQGATVAEMVEATGWLAHTVRGSISGALKKKLGLPITAEKAVGRGTVYGLQWRDTKP* mmseqs_cdd nonviral_gene C1 27767 21282 49049 GCA_002196965.1|NIPZ01000001.1@region_21283_49049@tool_cenote_CDS_0031 cloud direct high 584 0.998 GCA_002196965.1_00055 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 1 164 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 1 165 GCA_002196965_1_114_1 GCA_002196965_1_114_1 + 51323 . pfam13683 Integrase core domain. EMLNGEVFYSLREAQILIEQWRKHYNTKRPHSALGYRPPAPETIVPMDQRPVMH* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0001 persistent direct moderate 161 0.982 GCA_002196965.1_03074 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 837 1187 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 838 1188 GCA_002196965_1_114_2 GCA_002196965_1_114_2 - 51323 . COG0640 DNA-binding transcriptional regulator, ArsR family [Transcription]. MTAQNIQDDLSAPDTLELRAKLFRGLSDPSRLTILDALVSEERNVQEIVGHTGLGQPNVSNHLRCLLECGLVSRRSKGRFVRYRLADRRVADLIRDADQLLASTANGVDACQSYTD* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0002 cloud direct high 350 0.997 GCA_002196965.1_03075 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 1251 2102 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 1252 2103 GCA_002196965_1_114_3 GCA_002196965_1_114_3 + 51323 . COG1230 Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]. MSQPDNSKLATASSPIRMRVQGMDCAKDAAEIERAARSAGVAEGDVKVSAATHIMTLRIADGDLPKVRPALDATGYGFEKIEDGDTSSDPAYKDPSYRRALWIVVALNLGYGVVEMFGGFLSGSQALKADALDFLGDGAITFLGLLAIGWSLTWRARSAMIQGVFLGLLGLGVVGSTLWRVLNQTTPEAGLMGAFAVGALIVNILAVLPLLKHRKGDANMRAVWLFSRNDAIGNLAVVIAAGLVAWLGSAWPDLIVAFAIAGLFLHSSWMIIRDARSDLVEAD* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0003 cloud direct high 851 0.999 GCA_002196965.1_03076 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 2553 3752 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 2554 3753 GCA_002196965_1_114_4 GCA_002196965_1_114_4 - 51323 . PFAM:PF04986.12 Putative-transposase MPRPKLEIADIFRAHGSTWRRANAGHVSLSQLKVMSAIEACRTEAFGGHVAGCTKCGHQHVAYNSCKNRHCPKCQGPAARDWMEARAEDLLPVEYFHVVFTMPAEIAQIAYWNKKAIYGLLFKASAETVMTIAADAKRMGARVGMTSVLHTWGSALTHHPHIHMIVPGGGLSPDGARWVACKPGFFLHVRVLSRLFRRLFLEGLMDLHRADQLTFFGDMARLADNAAFATWLSPFRKSEWVVYAKPPFGGPEAVLAYLSRYTHRVAISNARLVSADAHTVAFRWKDYRVKSGGRQKVMRLATPEFIRRFVIHVLPDGFHRIRHYGLLASSTRKANIRMIRALLCVQRPEQVTAPGPHTEIIPLTLREPCPCCGGPMRIIEIFRRGQKPMSRAPPREQAA* common_virus_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0004 cloud direct high 1199 0.999 GCA_002196965.1_03077 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 3765 4652 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 3766 4653 GCA_002196965_1_114_5 GCA_002196965_1_114_5 - 51323 . PDB:1A0P_A Recombinase-XerD MTEESVSPLRQRMIEDMRIRGMGDKAQKSHIRAIKDFAAFLGRSPDRATPEDLRAYQLHMTDTGVTPSTFNTRIVALRFFFGMTCGREEMKRYMQFRTEPRKLPVVFSVEEVSDILMAAPGPGLKYRAALSISYGAGLRAAEVCNLKIGDIDSDRMLIHVEQGKGQKDRKVMLSPGLLELLRAWWREARPEGWLFPGKPRINPISPRQLNRAFTSAKHMAGVRKPATLHTLRHSFATHLLEANTDVRVIQVLLGHAKLTTTARYTHVATKTIRDTVSPYEMLARLQDQTVKRSLE* common_virus_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0005 cloud direct high 887 0.999 GCA_002196965.1_03078 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 4801 5241 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 4802 5242 GCA_002196965_1_114_6 GCA_002196965_1_114_6 - 51323 . PFAM:PF15919.4 toxin-antitoxin-system-HicB-like MPSAKPPRNLTPVLCRRLQAEMLKACEAVAARHGLVVEPRDITGADLRWGFDATFRVSIPLPDSSALDPERLRFEALSEAFGLSPADYGRQFSTGREQFRITGIDPRRPKYPVSAERIPDGQQFKFTAEQVSLLLQHGMKDVTPKG* phrogs_hmm hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0006 cloud direct high 440 0.998 GCA_002196965.1_03079 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 5506 6777 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 5507 6778 GCA_002196965_1_114_7 GCA_002196965_1_114_7 + 51323 . PDB:1Z19_B Integrase MVKRLKLNEKTLREAEPKPGVSYQIFDTEVIGFAARVQASGARTFTIDYRHAGRQRRMTIGRWPEWSVTAARERAKELRRAIDEGQDPLAARDDWRGAPHVTDMIDRYIAEHLPKLAKTNAGDQVSMLKKMVEPAWGNRLVTEITKSDVAKFLDFVAEGRPRPSKAKPNNRARKLQGHKPTPIRANRMGEVLRKMFTLAMEWEWRTDNPAQGFHRRIEHARERFLSPEELTRLAAVLDAAEDQRAAAIIRMCMLTGARVGEVRTARFEQFNLDYAIWSKPASTTKQRKIHRVPISQDVAAIVRLRLRAVPSGNPWLFPGDTVGQPVREIRRFWAKVQKDAGLADVRIHDLRHTFASLLVSGGASLEIIGKLLGHSQMQTTQRYAHLMDSPLRAGVDTVASLLRPRPRLVHDAAQDGADLPKSA* common_virus_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0007 cloud direct high 1271 0.999 GCA_002196965.1_03080 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 6781 7383 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 6782 7384 GCA_002196965_1_114_8 GCA_002196965_1_114_8 - 51323 . . hypothetical protein MPLPPVAFYSIYEIAVRWGCPPADVAGWAAEGHLKVVAGIPPVRCGDEVVGGLVEVPIAELMCMFRRFGPSDDIGRLRRVLKPGSATWAHVTEPSDGLPIRSSDLLVASGSLLQFEEERDLLRRPASTIGASPRYDWDAMYAWLTWFIFEKGVPETQTALVSLVQDWFVQNSKSGEVPDESTIRKRLSSLWRKLRGEETV* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0008 cloud direct high 602 0.998 GCA_002196965.1_03081 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 8006 8254 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 8007 8255 GCA_002196965_1_114_9 GCA_002196965_1_114_9 + 51323 . PFAM:PF10013.8 excisionase-and-transcriptional-regulator MKDMQNDPVEEVPDLLADWISREQLARALDLTTDTLSRWEARRQGPPCTRIGRKIFYRRAAIQEWIRSQEQAHPVRKTRGRS* phrogs_hmm hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0009 cloud direct high 248 0.996 GCA_002196965.1_03082 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 8251 8490 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 8252 8491 GCA_002196965_1_114_10 GCA_002196965_1_114_10 + 51323 . . hypothetical protein MTIHPRSSAWPADRVAEARAVLADVAHHSDLLIRLACNVLVQHGETPGERADAQRLLVVVDARRPVRRAQREDQGRATR* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0010 cloud direct high 239 0.996 GCA_002196965.1_03083 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 8487 8882 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 8488 8883 GCA_002196965_1_114_11 GCA_002196965_1_114_11 + 51323 . PDB:4QBL_E Nuclease MKRRGTPEADLQRAVVQALRIALPRSAIIHHCANEVTESGYRGAKRQAILVGMGVHAGFADLMVLSDGRVLFLELKAPKGRLRPEQESFRDAVQAQGFGWALVRSLDDALGALADHGFTTRIAPATRRPAP* common_virus_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0011 cloud direct high 395 0.997 GCA_002196965.1_03084 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 8879 9886 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 8880 9887 GCA_002196965_1_114_12 GCA_002196965_1_114_12 + 51323 . pfam13730 Helix-turn-helix domain. MSHDATNWAIKQRGLKPTTKIVLWHLCDRFNPDFGCFPSQDRLAHDCEISRSTLNDHLGQLEAVGLLRRVPRLDPVTKRQLPTRYILGFEPGFTPVAVVPCPEIGHGDDGGAERLDGADACAGGGVADALPCPDFGHGDDARPVSDFPADPCPENAGSRVRISDTNPVREPLSKPVKEEEGAQAREAISDEVFGDLLAALGLDPAALPGWWQGWPPRLHVQRWRDELGLTEAEIIAAAEASREEHPEPPDGPKALDRAMQRAAGRKVEDAGRKRRKPKAAPAPAAKPITDLPAFYADLVNSDRYLPVSAISNTMRDAMLARGLVTAERLRERGVR* mmseqs_cdd common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0012 cloud direct high 1007 0.999 GCA_002196965.1_03085 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 9787 10398 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 9788 10399 GCA_002196965_1_114_13 GCA_002196965_1_114_13 - 51323 . . hypothetical protein MGQDEDAQPLMRRADLCRREQARRRRIAQSPKLSQDGFKAESDVTGDVFEEDPFGAELKDDAGDIRPEMAGIVGAAALSGRAEGLAGISSQHRVEGAAERAGVEAAQVGPDRGRGEVACALGGNEDGAGPVLPFDEGAGVIAGFGEHEAQIKASAASAEGQSVPGTKHHAIHRTPRSRRRSAVTSPRASMASRIVLLIALTGR* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0013 cloud ambiguous low 101 0.165 GCA_002196965.1_03085 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 10403 10996 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 10404 10997 GCA_002196965_1_114_14 GCA_002196965_1_114_14 + 51323 . . hypothetical protein MSLHPGTGRYNPAGNSEFAVADLRFTRKAEALALCIAKALPNHWPTPAAQNWKGSSEASVTRSDGKSRMDLLHYRAEQGFTPPAPATSPDGPRSLPHAPISRPLWASMIASHGRAVSRRILKGRSRRRLNPLFVGWLMGWPIGHALCACSATEFTLWQQHMRGALSQLPMASGPWIWRPTDAAQRPAQMDFLEGLQR* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0014 cloud direct high 593 0.998 GCA_002196965.1_03086 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 10993 11673 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 10994 11674 GCA_002196965_1_114_15 GCA_002196965_1_114_15 + 51323 . . hypothetical protein MSFHGRVRGTRIKRALGVQAALEWAFRIEQAQLELPLPPDVTEEGFGFGLEYVLLQRAVLGCKIDGGQHKIGGYTHEDAEVIAATVAGIPDILGGKRMAIRVAELARAGLTPDWMPGAIPRCVPTIVKQNQHGTHAGAIVVGTERIRVRGAGARATWKTIDILACPVTFSPHPQQIDAARRGYDDWWQALGWVREGLIAGGMLREVEVTGAMPKAKPWERTPPSRC* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0015 cloud direct high 680 0.999 GCA_002196965.1_03087 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 11740 13278 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 11741 13279 GCA_002196965_1_114_16 GCA_002196965_1_114_16 + 51323 . pfam02384 N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes. MASIDNGSDLGIEAALFKAADKLRGNMEPSDYKHVALGLIFLKHISDGFEMKRQALLTEYPEGAEDPDEYLADNIFWVPQEARWSHLQANAKQPTIGKLIDEAMIAIEKVNPSLKGVLPKDYGRPALNAVMLGELIDLISGIALGEGKDKARDLLGRVYEYFLGQFAGSEGKRGGEFYTPRSVVRTMVEMLEPYKGRVYDPCCGSGGMFVQSEKFVEAHGGRLGDIAIYGQESNYTTWRLCKMNLAVRGIDADIRWNSEGTFHKNELPDLRADVILANPPFNISDWGGERLREDGRWKYGIPPAGNANFAWLQHILHHLSPTGTAGVVLANGSMSSTQSGEGEMRRAMIEGEVVDCMIALPGQLFYSTQIPACLWFLAKDKSNGIARDRKLRDRRGEVLFIDARKLGFMVDRTRKEFSDADIARIADTYHAWRLGEGYADVPGFCKSASLEEIRSHGHVLTPGRYVGAEAAEEDETPFAERFAALQELLEAQFAEAEEFTATIRARLAGVGL* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0016 cloud direct high 1538 0.999 GCA_002196965.1_03088 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 13275 14552 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 13276 14553 GCA_002196965_1_114_17 GCA_002196965_1_114_17 + 51323 . cd17516 Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.HinAWORF1578P TRD2-CR2. Haemophilus influenzae RdAW S subunit (S.HinAWORF1578P) recognizes 5'... CTANNNNNGTTY ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. MKEGWQLSTLDQLGRIVTGKTPATSEPENYGGNIPFVSPSDMQGQRIIEDVARYLSDTGAAKVRNSIIPARAVMVSCIGSDMGKAAIAARRCVTNQQINSVIASSDHDPLFIYYNLSARKDEIRGSASGSAQPILNKSAFGRMKIDLPPLPEQRAIAATLGALDDKIELNRKMNATLEAMARALFRDWFVDFGPTRARMEGRAPYLSPDLWSLFPDRLDAEGKPEGWEVGTLIDLALLNPESWTARNAPARVSYVDLANTKWGSIDKVEEYAWADAPSRARRVLRAGDTIVGTVRPGNGSFCYIGEDSLTGSTGFAALRPKNLRDKAFVWCAATSPENIDRLAHLADGGAYPAVRPEAVAATGIVIPPADVLNAFRSAVSANLDLMEANRAESRTLAQTRDLLLPRLMSGELRVAEAETLAREVA* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0017 cloud direct moderate 1058 0.828 GCA_002196965.1_03089 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 14552 15667 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 14553 15668 GCA_002196965_1_114_18 GCA_002196965_1_114_18 + 51323 . COG3177 Fic family protein [Transcription]. MAVAYHQGQFPPGALDWPQLLPLIGPANAAVARYEGVLHGIPNPNVLLSPLTTQEAVLSSRIEGTQATIGEVLEFEAEGEPGDESTAKKADIHEVLNYRAALAEASHLLEDLPLSQRLIRLTHERLMQGVRGRNKAPGEYRRIPNWIGPEGCTIEQARFIPCSAEALPDAMTAWEAYIHAAAPDALIQLSILHAEFEAIHPFLDGNGRLGRLIIPLFLKSKGLLSAPNFYLSEYLESHRDEYYDRLLAVSRDGDWTGWCGFFLRAIIEQAGTNQAKAQAIHALYTARKDWMVEATRSQYGVRALDWFFSRPIFVASDFVTQADIPEPTAKRILRLVRDNGLLREIRASSGRRPAVLAFPELLNICEGRDAF* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0018 cloud direct high 1115 0.999 GCA_002196965.1_03090 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 15789 18920 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 15790 18921 GCA_002196965_1_114_19 GCA_002196965_1_114_19 + 51323 . PDB:5JXR_A Chromatin-remodeling-complex-ATPase MPTLTEAEVESVLIDQLGALGYACLNDAVSGPDGAAPEREAYSDTILAGRLRNAIARLNPQIPEDAREDALRRIIASDRPSLIEENRRLHRFMIEGVPVEYRAEDGTIRGDAVRLVDPEDALNDWLAIAQFTVIENGNNRRPDVVVFLNGLPVGVIEVKKPGAETATLGAAFNQLQTYKAQIPSLFRANAVLVTTDGIQARIGSLTADLERFMPWRTTDGAEVAPKGAPEMSVLIDGVFARPRLLSLMQNFTVFGDAPGGIAKIIAGYHQFHAVKRAVASTVEASRSGGDRKVGVIWHTQGSGKSLLMAFYAGQLVREPAMENPTIVVITDRNDLDDQLFGTFSMCRDLIRQTPVQAENRGDLQKALSRASGGVVFTTIQKFVPEKGEAYPLLTDRRNVVVIADEAHRSQYGFKARIEKTGEIAYGFAKHLRDALPNASFIGFTGTPIEQDDVNTPAVFGHYIDVYDISRAVEDGATVPIYYESRLARIELPEEEKPKVDAEIEELTEDEAVSELERLKRKWSTVEALVGAEKRLRMVAEDLVAHFEARVQAMDGKAMVVCMSRRICVDLYNQIIALRPEWHSDDDNVGLVKIVMTGSASDPEAWQPHIGSKARRDLLAKRAKDPKDPLKLVIVRDMWLTGFDSPSMHTMYIDKPMRGHGLMQAIARVNRVFRDKPAGLIVDYIGIAQNLKSALGQYSKSDQEQAGIDEAEAVAALLERLDVVRSMFHGFDYSAGLTGTPHQRLVTLAEALNWILAKQDEAAQRETDKEAKKAAHRRYPDAVLALSKAFALSSASDTARDVRDEVGFFQTVRAAMVKAADTSGRSAADRDLAIRQIVNEAVASTDIVDILSAAGLSSPDISILSNEFLAEVGQLEKKNLALEALKKLLADEIRSRSRSNVIETRKFSERLEEAIARYHTNAISTVEVLQELIALAKDVRDARNRGEETGLTPEEVAFYDALADNQSAIDVLGNDQLKIIAHELLKGLKANVSIDWAHRDSARARLRVLVKRILRKYGYPPDLEEAAVRGVLAQAEAMLSEMAL* common_virus_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0019 cloud direct high 3131 1.0 GCA_002196965.1_03091 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 19004 19345 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 19005 19346 GCA_002196965_1_114_20 GCA_002196965_1_114_20 + 51323 . . hypothetical protein MQFVCRSSLLTALLAVAASAGPATAETYQLICENPRREYQVRFSDGDTNIQLDVPEGTTLYRVLAVEETEARHVVVALTTNDGPTVRLSLRPYLRMEYWSGNELFQTDACRTP* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0020 . unmatched_CDS none 0 0 . GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 19761 21023 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 19762 21024 GCA_002196965_1_114_21 GCA_002196965_1_114_21 + 51323 . PDB:1Z6A_A Helicase-of-the-snf2-family MDLVFAPSQIETWPIARLRPYARNAKMHGDDQLAKIAASMAKFGWTVPCMVADDGELIAGHGRVLAATMLGLTEVPVIRLSHLDDAERRAYRIADNKLTELGEWDEALLRDEIAGLLAEDFDLTLLGISDDDLDALLRDPEALGGDGPVEGEDDVPELPGKPVSVPGDLWQLGVHRLICGDGTAADVVGRLLGDVRPLLMVTDPPYGVEYDPSWRNQAGAAKTKRTGKVLNDDRADWREAWALFPGDVAYVWHGALHAATVADSLVAAGFAIRSQIIWAKDRLVLSRGDYHWQHEPCWYAVRAKGKGHWAGDRKQTTLWQIANRDQDADTVHGTQKPVECMRRPILNNSSPGQAVYEPFMGSGTTLIAAETTGRVCFGIELNPAYVDVAIERWQSFTGVEAVLVETGETFAALKAKRLAA* rep_hall_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0021 cloud direct high 1262 0.999 GCA_002196965.1_03092 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 21020 22348 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 21021 22349 GCA_002196965_1_114_22 GCA_002196965_1_114_22 + 51323 . CDD:cd16403 ParB-like-protein MNAPLLPGRIEHWPLARLRPYVRNAKTHDADQVAKIAASMAEFGWTVPCLVAGDGELIAGHGRVLAAAQLGLTEAPVIVLGHLTEAQRRAYRIADNKLTELGGWDEALLLEELRGLMAEDFDLGLIGIPEDELDALLHDADDRAPIGDDTADTIPEAPADPITRPGDIWALGDHRLICGDATDPAVVARLIDGAQAALMFTSPPYAQQRDYGAAKKKVGDWDALMQGAFAAAPVTADAQLLVNLGLVHRDGEWIPYWESWVDWMRAQGWRRFGWYVWDQGPGLPGDWNGRLAPSHEFIFHFNRQPRKPNKTVESKHAGETLGGGGLRGADGTVHRKTGYGNAIQSHRIPDSVFRIMRHKGGLGAAGSHPAVFPVALVEAVLEAFTDPGDLVFEPFCGSGTQLIAAERTGRRCRAVELDPVYCDVAVRRWEMATGLKAVLAAE* common_virus_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0022 cloud direct high 1328 0.999 GCA_002196965.1_03093 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 22439 23059 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 22440 23060 GCA_002196965_1_114_23 GCA_002196965_1_114_23 + 51323 . . hypothetical protein MGIEHWDETRQRWILYRSEAEHSADCRVYPYEAVPGRIFLDTNVVNLLVNYPDQIFEQQPLPSIEDALLAEDLEALMHIFYVGRRANWAIMASRKTLDEVDNTPDPEHRQRLRDFAVELISPEDEANAYASVVGRRMIDAPFTRRLPDKADRELIGNAVGLECDVFCTRDRRTIIKKRDQLRLLPIRVLTPLEWWRHVRPWAGLCT* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0023 . unmatched_CDS none 0 0 . GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 23092 23667 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 23093 23668 GCA_002196965_1_114_24 GCA_002196965_1_114_24 - 51323 . pfam11994 Protein of unknown function (DUF3489). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important. MTTPSDTQSLILSRAATRPGNLALPLPGGLVGAAAKMVVGKMIARGWLEEVEANLRRGEPMWRETGDGHGTTLIATEAGLEAIGIEPLVATAVASARKARPKQEAERTPDDTDNATPVAIRAGTKQAQIIAMLQRPEGATVAEMVEATGWLAHTVRGSISGALKKRLGLPISAEKDKGRGTVYRLVKEAIS* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0024 cloud direct high 575 0.998 GCA_002196965.1_03094 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 23763 23990 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 23764 23991 GCA_002196965_1_114_25 GCA_002196965_1_114_25 - 51323 . . hypothetical protein MTTRRAADNSKALDAFIAAKAEIDTMLERLKALSDDHFETHPDEINWGHVGTLKHYADLLRQISDSVFKEGEHAA* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0025 cloud direct high 227 0.996 GCA_002196965.1_03095 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 24108 24644 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 24109 24645 GCA_002196965_1_114_26 GCA_002196965_1_114_26 + 51323 . PFAM:PF13591.5 terminase-small-subunit MKGMSEREYAAHSGLSRGGVQKARKNGRLVVHDDGSINAAASDVRRAEMTDPDQQRRSLGGETLASGPGDTTSYIKARTALTVYAAQERQLAVQKKKGALVDRARAETLVFRLARQERDVWVTWPGRVAALMAAQIMAEVERQSGASVTIETAIMQRVLEAHVREQLDALADLRVSLA* phrogs_hmm hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0026 cloud direct high 536 0.998 GCA_002196965.1_03096 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 24592 26643 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 24593 26644 GCA_002196965_1_114_27 GCA_002196965_1_114_27 + 51323 . CDD:pfam05876 Large-Terminase MSANSSTPSPTSGSRLHDEDENNDPTADFDLGFDGAEDLLRVWRQGLRPDPNLTVSEWADQHRWLSSRGAAEPGRYRTARAPYLREIMDALSPGHPAQRITFMKAAQVGATEAGNNWIGFVIHHAPGPMLAVLPSLELAKRTSRGRLDPLISDSPALRERVNPARSRDAGNSMLSKEFPGGILVLTGANSATGLRSMPARYVFLDEVDAYPASADEEGDPVTLAEARTTTFSHRRKVFMVSTPTIRGLSRIEREFEASDQRRYFVPCPHCGTMQWLQFDRLRWAKGKPETAAYHCEGCERPIAEHHKTEMLARGEWRATAVSKDPKAIGFHLSALYSPLGWKSWSDVGREWLAAQGSDETLRAARNTLLGETWVESGDAPEWQRLADRREAWKPGTVPMAGLFLTAGADVQRDRIEVDIWAWGRGLESWLVDHIVIPGGPDDPAAWDKLTALLGRSWQHANGAFMTVARLGIDTGYEAAAVYAWSRKVGFEQVAPLKGLEGFNRAAPVSGPTYVDATIGGKRLRRGARLWSVATATFKAETYRFLRIERPSDEDRATGVLDAPGTIHLPGWADTEWLKQLVAEQLVTIRNKRGYAHQEWQKMRERNEALDCRVYARAAAWILGADRWDEATWRRLEAQAGVETRMPSATATDIATQDPAQPKAGTLTTPRRKRRAYTPNFMRD* hallmark_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0027 cloud direct high 2051 1.0 GCA_002196965.1_03097 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 26643 26855 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 26644 26856 GCA_002196965_1_114_28 GCA_002196965_1_114_28 + 51323 . PFAM:PF02831.14 head-tail-adaptor-Ad1 MDLERMQALLTALQEARFAGLRSVSYDGKTVTYGSDAELAAAVRDLEARVAAASATPRRRRWGTVATKGL* phrogs_hmm hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0028 cloud direct high 212 0.995 GCA_002196965.1_03098 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 26858 28369 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 26859 28370 GCA_002196965_1_114_29 GCA_002196965_1_114_29 + 51323 . PFAM:PF05136.12 Portal-Protein MVFDAFRARLGSIIGGFDAAQSHRRMRGFRATRAHVNTLIATSGETITARARWLVRNNGYAANAVDAFANHVVGDGIKPSSKIADATKKEELQRLWLAWTDEADAEGLTDFFGLQRRAAREVFLAGEVFLRIRTRRPEDGLTVPMQLQMLPSEMLPQDMTRGLPGAGSIRQGIEFDGIGRRVAYHFLRRHPGDMTDPGLAGETVRVPASEVIHILDPVEAGQLRGVSRFAAAVVKLFTLDLYDDAELERKKTAAMFAMFITSPAPETALDPAEDDLEVEPGQVVRLDPGEDVTTPSTPDSGSTYEPFQYRTLLQIGAALGVPYGYLTGDTAKGNFSNTRIALVDFRRRISAFQHSVMVYQLCRAVWTRWMDMAVLAGAIDLPGYATDRRAYLACDWLPTKWDWIDPAKDAAAEILQIEAGLKSRTQAIAERGYDAEQVDREIAAERKREAELGLDFRRPGSPAQAVDGGAGSGDAEDRQQDQQDGNNKEDDGEGREPRPAEDA* hallmark_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0029 cloud direct high 1511 0.999 GCA_002196965.1_03099 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 28369 29679 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 28370 29680 GCA_002196965_1_114_30 GCA_002196965_1_114_30 + 51323 . cd07022 Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. MHHTQIAQRVFNTPLMVDPAKALAFLTGLGPRITGREITVEGMPVNPADQATAALPARASLFSDDLTSRQARNGSQPFTVVDGIAVIEIAGTLVHRGAWIGQSSGLTSYEGIAAQLQAALVDPAIRGIALDIDSFGGEVAGAFDLADRLRAARTQKPVHAFVADHALSAAYALASQADRIILPRTGAVGSIGVVAMHSDMSGALDQKGIAVTLIHAGARKVDANPYQPLPEAVRTRIAGELEDLRQLFAETVAEGRGRRLDTLQALGTEAAVFRGEAAVFAGLADEVADPVTAFRAFAAAPRGTTPPKGKGPMMTTAPEDHAQPATAPAASTPPEPAPPAAVAPPQTTAAAMSPEAIRAEAAEVAQVCAQAARLGIQIDAADAVTKGVKPEALRAKVLADLAARSDAAAIIATAPAAGAKESPIVAAAKKSAAASR* mmseqs_cdd common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0030 cloud direct high 1311 1.0 GCA_002196965.1_03100 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 29733 30113 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 29734 30114 GCA_002196965_1_114_31 GCA_002196965_1_114_31 + 51323 . PDB:1TCZ_D Head-decoration-protein MPVLTEPPSMGDVLKYEVNPNYTREVVTLLAGMPYPVGSVLGKITASGKFTLSPATGADGSQVATAVLLYAVDATLADAIGIVLVRGPAIVSRAALAYGATVDDGTKIAAKITQLAAVGIIARDGV* hallmark_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0031 cloud direct high 380 0.997 GCA_002196965.1_03101 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 30140 31165 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 30141 31166 GCA_002196965_1_114_32 GCA_002196965_1_114_32 + 51323 . PDB:3BQW_A Major-capsid-protein MTLVRNPFDAGGYSLAEMTQAINILPNLYTRLAQIGLFRFEGVSQRSVIIEQYEGVLSLLPSVPLGGPATVGTREGRSMRSFALPWIPHDDVVLPADIQGQPALGGAFDAADPLVEVMNRKLLLMRRKHAQTREYMEMNALRGIVKDGAGTTLYNYFTEFGLAQISVDFVLGTAGTNVQDKVREVLRAIEDNLLGEAMTSVHALVSREFFDKLIAHPKTEEAYKFYASTGAQPLREDVRRNFPFGGILFEEYSGTVTLSTKATERLVPANEGIAFPLGTMDTFTTYGGPANLLETANTIGLPLYARQHLDEKGRWIDVMTEASILPVNKRPRLAVRIHSSN* hallmark_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0032 cloud direct high 1025 0.999 GCA_002196965.1_03102 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 31172 31486 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 31173 31487 GCA_002196965_1_114_33 GCA_002196965_1_114_33 + 51323 . PFAM:PF05354.10 head-closure-Hc1 MSVFAAAMDRIFTHASMAAPALWISATTSEERPIRIIRRAPDHVTDFGAGRFVSDSTVVDVRVADLPAPRPGDVIVIGAGSHIIQGEPLRDRERLIWTLDLRPA* phrogs_hmm hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0033 cloud direct high 314 0.997 GCA_002196965.1_03103 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 31483 32124 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 31484 32125 GCA_002196965_1_114_34 GCA_002196965_1_114_34 + 51323 . pfam20039 Family of unknown function (DUF6441). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 210 amino acids in length. MKLKLEINPNLATLMQAEIAAGEKAVATAMREAGAGLKSAWRGQITGAGLGTRLGNSIRLATYPKGGESLNAAALVWSNAPVIVGAHDTGPLIRSRNGFWLAIPTPAAGKSTRGGRITPGEWERRTGLRLRFIYRRRGPSLLVAEGRLNSKGRAVASRAKTGRGLTTVPIFLLVPQVKLRKRLDLARDAEQAIDGVPGRIVAGWDDLYTEMLR* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0034 cloud direct high 641 0.998 GCA_002196965.1_03104 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 32614 33516 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 32615 33517 GCA_002196965_1_114_35 GCA_002196965_1_114_35 + 51323 . . hypothetical protein MNLNKLVEPNKLSQSLSNLAASLGASTKAVDFVAAGAPFACYQTLKGTCPSDHEFPQGYFSGRMGNARRTVAGIECATDGLDEACFMSLPLGGHKAVRSTGIFSWVDEALADLQRYNPEALSHIVNWCRLFVWVSRVASEINEVTSVAIPSIPYCIFISKKAIRHIPPKTVIQHVGLYALQENIFHECCHQELTSYLTLNSLLVQERSAVNEQVFIPWRSTHWPIDRAIHAAFVYSRLSWFRGIALTSNRLHPRESSALIDAQCDGRVALEYLTKQITERVGVLSDEGRAILRELNEVAL* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0035 cloud direct high 902 0.999 GCA_002196965.1_03105 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 33616 34038 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 33617 34039 GCA_002196965_1_114_36 GCA_002196965_1_114_36 + 51323 . PFAM:PF06141.10 tail-terminator MPTTRELVLAALHARLQPLAALTLRDEVLPERIPAAGLIILRDGQPGEPEVTLSPLRCHYQHRAELEIVVQAGTGRASAFDDLIAAIGAALEADRTLGGLCDWVEPEAPASVDLPIEGAAALKAAVITIVLHYTTTGPLA* phrogs_hmm hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0036 cloud direct high 422 0.998 GCA_002196965.1_03106 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 34062 35000 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 34063 35001 GCA_002196965_1_114_37 GCA_002196965_1_114_37 + 51323 . PDB:5NGJ_B Tail-tube-protein MARAHGARAQMALAFETVYGTPPASGYRLMPFARTTLGAEQPLLNSELLGYGRDPLAPIKDAVTADGEVVVPIDVEAFGFWLKAALGAPTTTGTTPKTHTFQSGNWTLPSMAIEVAMPEVPRFAMYAGCVVDQLSWQMNRSGLLTATARLIAQGEAIAATTAAGTPTALGLQRFGHFNGVVKRNGTTLGNVVSAEITYANGLDRIETIRNDGKIEGADPGMAALTGRIEVRFADSALVTQAIDGTPCELEFAYSLGANASYTFTAHAVYLPVPRIEIPGPQGIQATFDWQAAKATSPARMCTAVLVNTVTGY* hallmark_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0037 cloud direct high 938 0.999 GCA_002196965.1_03107 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 35003 35440 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 35004 35441 GCA_002196965_1_114_38 GCA_002196965_1_114_38 + 51323 . PFAM:PF08809.10 Tail-assembly-chaperone MIRLNLSNRPEWLDLLPGLRVLVAPLTTALMVSARADPMIDGLSDSSSQEDMALAMAKAVARQAVLEWDGVGDEAGNLVPVSPAGIDALLEIWPVFEAFQAQYVARGLMLDQEKNASGPSPTGPSAGATTIARPARAPAPTAPQD* phrogs_hmm hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0038 cloud direct high 437 0.998 GCA_002196965.1_03108 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 35449 35670 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 35450 35671 GCA_002196965_1_114_39 GCA_002196965_1_114_39 + 51323 . PFAM:PF08809.10 tail-length-tape-measure-protein MTVEGWQVWDLTQRLGGQLRLAPGAVIGWDMGAALSLAQALGIAPLIAAELLPEIEAVMVRKLNEQMEGRRNG* phrogs_hmm hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0039 cloud direct high 221 0.995 GCA_002196965.1_03109 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 35663 38125 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 35664 38126 GCA_002196965_1_114_40 GCA_002196965_1_114_40 + 51323 . Uniprot:A0A0P9JG44_PSESX tail-tape-measure-protein- MAEKKVSVRLVAEGGRRVRAELEGVGEAGARGFGRLSREMELANTRLASFARRAGLALGAAAAAATASLGLIVRSTAESAAQIRQFAQVANATPEALQRWSAGARTVGIEQEKLADILKDVNDRVGDFLQTGGGPMADFFENVAPRVGVTADQFARLSGPEALQLYVDTLERAGLSQQEMTFYLEAMASDATRLIPLLRNGGAEMARLGDQASDLGAVLDNDALEALRRTQLALGTVSLVFDGLRNRIAVAVAPTIEALANAFVALASDGGILRSAIDTLIGNLGRLATYAATFAAVMAGRWVAGMAAAALSVRGLATALVLLRGALIRTGIGALIVGAGELVYQFSQLVARVGGVGETFRLLGDLAREVWSRIGLSLDAALARMTAGWEGLKAAGLSALEGTIAGVVSFGDRTAAIFQGAYDAAVAIWGSLPGAIGDFAFQAANGLISGVEAMLNGVVTRINSFIETLNAALALLPEWATGEGGVRIGILDPVELGRIGNPFEGAATAAGAAAADAFSAALSRTYLEPPDLGLGAMADDARARADGYREAAGMLADAAGRPLASWQALKNAVTGTGVDAETALAGAAAAAGALGEDLDDTGGAAGRAGAAGRQAGADTADGAEQALTGWQAVTAALADYAAKARDIGGDIGSALVGAFQSAENAIGDFVKTGKLDFRDLVTSMIADLAKLAARRFILGPIANALSGALGGAGGIFANILHAGGMVGAPGPGRMVPALAFAGAPRMHNGGWAGLRPDEVPAILQRGERVLSRREAAGHGQASASTVNVTINARDAESFRQSRTQVASDIARAVSLGRRGM* hallmark_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0040 cloud direct high 2462 1.0 GCA_002196965.1_03110 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 38125 38751 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 38126 38752 GCA_002196965_1_114_41 GCA_002196965_1_114_41 + 51323 . PFAM:PF09343.9 glycoside-hydrolase MAFHEVRFPDNISRGARGGPERRTQIVELASGAEERNASWANSRRRYDVAYGIRRADDLAAVVAFFEARNGRLHGFRFKDWADFKSCLPSQSPGPTNQPIGTGNGSATLFQLTKRYSSGAQSWTRAITKPVAGTVTIALNGTPQASGWSVSSVNGLVTFTAAPAAGVAITAGFEFDVPVRFDTDALDVTLDLERLGSITSIPLVEIRT* phrogs_hmm nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0041 cloud direct high 626 0.998 GCA_002196965.1_03111 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 38748 39632 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 38749 39633 GCA_002196965_1_114_42 GCA_002196965_1_114_42 + 51323 . PFAM:PF05100.11 Minor-tail-protein MKALNPALQALLDEGATTLSWCWRITRADGVTFGFTDHDRALSFDGTEFEPESGLTASEVRSGSDLSVDAQDAQGVLSSDRITETDILDGRWDAAVVEVWRVNWANPSQRVLLRRGAIGQIRRGRLAFVAEVRSLAHVLGQTVGRTFQASCDAALGDARCGVNLEAPALKGSGAVIDVLRDRAFTASGLGTFAASWFTFGLVEWSTGANAGRRVEVLSHDLVDGVAILTLLEAPVRPITAIDSFIVQAGCDKRIATCGTKFANVANFRGFPHIPGQDAVLRYATKDGGHEGAVL* hallmark_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0042 cloud direct high 884 0.999 GCA_002196965.1_03112 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 39629 40063 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 39630 40064 GCA_002196965_1_114_43 GCA_002196965_1_114_43 + 51323 . TIGR02219 putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by pfam00877 and by Anantharaman and Aravind (). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions] MTAADPLLVIAVARSWLGTPYHDQASLRGVGCDCLGLARGVWREVIGPEPFPIPPYSRDWGETGPREVLADGARAMMPEIVPAYAPPGALILFRMMPRAIAKHVGILTGPDIFLHAYERLGVIEEPLTPAWRRRIAFAFLFPAR* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0043 cloud direct high 434 0.998 GCA_002196965.1_03113 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 40073 44074 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 40074 44075 GCA_002196965_1_114_44 GCA_002196965_1_114_44 + 51323 . PFAM:PF13550.5 tail-protein MATLVLGAVGSAIGGAFGGAILGFSGAAIGGFIGSTIGSVVDSWIVSSLAPAQKIEGQRLDSLRITSATEGAIIPCLYGRMRIGGNIIWATDFREETKTTTQGGGKGGGGGGRVQTTEYLYYASFAVALCEGPITGIGRIWADGKPLDMTGITWRWYRGDETQTADPFIAAKMGAANTPAYRGTAYVVFEELPLSTYGNRLPQLSFEVFRPLADPDTAEGLVKAVTMIPASGEFTYATEAVRKTIGATTTVFGQTTGGTTSAENLNALPDEADIVVALDRLQAMAPAVESVSLVVAWFGNDLRAGNCTIKPGVEVAAKVTSPKVWSVNGVARANAHLVSRDAEDRPVYGGTPADFAVVQAIREMKARGLRVTFYPFLLMDVPPGNTLPNPYSANAATPGQPSFPWRGRITCSPAAGFAGTADKTAAAATQVSAFFGAASPAQFAVSGDTVSWTGPSGDWGLRRMILHYAHLCAVAGGVDAFLIGTEMRGLTTIRSSASAYPAVTAFKALAAEVKAILGPGTKVGYASDWSEYFGHQPGDGTGDVFFHLDPLWSDANIDFIGIDNYMPLSDWRDGFDHADALEGWPANHDRGYLQANIAGGEGFDWFYASDADRSTQIRTPITDGAAGKPWVFRYKDLRAWWSNPHFNRPGGVESGTPTAWVPQSKPVWFTELGCPAVDRGTNQPNVFFDPKSSESFTPYFSRSWRDDAIQRAYLEASYLWWGQGANNPISTVYGGRMVHVPECAAWTWDARPYPFFPELTGIWTDGPNWRLGHWLTGRLGAVSLAALVRHLCLRAGLDEALIDVSGLWGAVEGYVIGALESPRSSISTLARHFGFDAIETEGVIRFVMRGRASVATLATDDLVAVREGEAFELTRGQETELPQALKWQVARADEDYDAALVEARRITVDTTRIASESFPMAIPPEEAERRCRRALMEAWIGRESATFRLPPSRLALDPADVIRLAHDGREVEFRLVSVADAEARGIEAVRQDRAAYDLPPGDPRPASLASPVVFGTPEVVMLDLPQITEDQPAHRPLIAAHASPWPGEIAVFRSASTDGFNLLTTFGSRARIGTLAFDFFPGPTSRFDLGNQLVVDLLSGTLESVTDVVLFGGANALAVEAAAGQWEIVQAGQAELIAPSRYRLIRLLRGQRGTEHAMGNPAPAGTRVVVLDATLASLPIAESDLGQPWNWRVGPAARSVTDDSYAALGFTPTGRGLVPFAPVHVEQPWRIARSPGDLTIRWTRRSRALVADAWEQVEVPLAEDVEGYDVQILDGASVKRTLTSTTTSVLYTAAQQTADWGAPLGPGQTLVIRIYQLSNRLGRGTPASVTLQF* common_virus_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0044 cloud direct high 4001 1.0 GCA_002196965.1_03114 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 44096 46021 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 44097 46022 GCA_002196965_1_114_45 GCA_002196965_1_114_45 + 51323 . pfam10983 Protein of unknown function (DUF2793). This is a bacterial family of proteins with unknown function. MSDTTTHLGLPYLLAAQAQKHATHNEALRLLDAMVQLSVLDRTRTAPPASPNDGNRHLVASGATGLWAGWDLNIAFWVDGAWIRLVPRTGWLVWVAAEGLFLVWTGSAWEVVGEPRDVSDAVFSLVNDADPTKKATFSLAGISAGTTRSFTLPNTSSELAILAGTQTFSGNKTFSGTLTASGTVTVSAASASIGTATTTATYGMGTGATTAGVTKTVNIGTGGASGSTTVVNIGSATAGAGGTTVVNTPTVTFANAVTQVGMPQANLTAQLLGLGGATADSYNRLSVNTPAVLLNNAGSGIEATVNKAAAGNDAAFAFKTGFSARALIGLLGNDDFSFKVSPDGSAFFDAIKVDRTNGRVELAEPVVLPAHDAVPSPPPAGKLALYARDRAGMGWLDVERPSGRHFPLQPHFGVNRIATWAPSTSTTINTNGMPRTAVGTAATPTLATTNLSTSMRRWRMTSAATAGAAAEERSAGWVCWRGNAEGLGGFTYVNRLSLVTLQATGMGFFGLIGSIAALSTTLTLSAVVNALGIGFERGTHANWQIVHNDGAAAPTLIDLGAGFPVASTTNVLTLYIAAAPNDSAVGIRVVEEVSGAVAEATITTDMPAATQLLSPRNYLNNGSTAAAVAYDCSGVYVETDY* mmseqs_cdd common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0045 cloud direct high 1925 0.999 GCA_002196965.1_03115 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 46054 46362 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 46055 46363 GCA_002196965_1_114_46 GCA_002196965_1_114_46 + 51323 . . hypothetical protein MDNQTTLAGEVARAFRDHGITAALTALIGGTMALIAAITRKAFTNEALLDRLDRELIADRDRIDRQRSEDRKTDGDRLDRIETDIRSMRDMLFDAFQRGRSD* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0046 cloud direct high 308 0.997 GCA_002196965.1_03116 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 46485 47159 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 46486 47160 GCA_002196965_1_114_47 GCA_002196965_1_114_47 + 51323 . PFAM:PF08291.10 Peptidase-M15 MPILTYSHWRDVPATAWRWPNFSAAEIACRGTGAIKINTEAMDKLQALRDRLGKPLIIRSAYRSPEHNRAVGGAPASKHMQATAFDIAMSNHDPAAFEAAARAVGFLGFGYYPRSGFMHIDLGPARSWGDPFPARSVPFAPELPPVREVLSESRTLRGGGAAGAATVGAAGVEVLQDVLAETQSTIQPLVPYLDTLRWVLIVIALIGIAVTIHARLDDWKRGQR* common_virus_hmm common_virus C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0047 cloud direct high 674 0.999 GCA_002196965.1_03117 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 47156 47401 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 47157 47402 GCA_002196965_1_114_48 GCA_002196965_1_114_48 + 51323 . . hypothetical protein MIGWLLTHGPARKALGLFVSAAAILLFLLNLRRAGERAGRVAERLDLRERNDAIHRQMLDAAARRPADRDALAERLRDGRF* . hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0048 cloud direct high 245 0.996 GCA_002196965.1_03118 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 47892 49676 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 47893 49677 GCA_002196965_1_114_49 GCA_002196965_1_114_49 + 51323 . COG1479 Uncharacterized conserved protein, contains ParB-like and HNH nuclease domains [Function unknown]. MAIQKIQSEDCSVASLFQSFYAVPDYQREYVWDTDQVEQLLKDVREEMGDGPAQDAPEYFIGSIVVCPGRDGVLDLIDGQQRMTTLYITLCAIRDRFAELGAQPSSVLNSQIADAAVDVSGEERRRYRLDLQYEDSGDALTRLADGKRIETPSTQSMRNMHNAHHVVTRFLESEFGQDAAAVRKLYGYLTNKVKLIRIETEDVAKALKIFETINDRGVGLNSMDLLKNLLFMKTPKGQFDRLKDTWKELQDTIFRMGEKPLRFLRYFIFSRYDVDLLREDEIYGWFTKNDALVGYGRDPIGFAKELVSAARAYERFREGKNEKGERNRYLDNIRLLGGQAARQHLILLLAGRHLGPALFDRLAAEVENLFFCYVITREPTRDFERNFAKWATELRSINSDDELDTFIVARFDKAKADLANRFDDSMGRLALRSLQLYRFQYVLAKLTQQVDLLAYGETEGTRWLGNYVSGGYEVEHIFPQTPNAEAAAEFGPVGDPEVVQRLGNLVLVEKSINTSLGNRPYSEKRPVYQQSKLLLTRALSERPKVGTNTRIDRAVALIEPYSSWNEGAVHQRQRSLVTLARAVWGLPEQAASIG* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0049 cloud direct high 1784 0.999 GCA_002196965.1_03119 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 49984 50484 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 49985 50485 GCA_002196965_1_114_50 GCA_002196965_1_114_50 + 51323 . COG5340 Transcriptional regulator, predicted component of viral defense system [Defense mechanisms]. MADGVVVRIGRGLYQLPDSEPDLHEGLIEIAKLAPKAVICLTSALSFHQLTDQLPRRVWIAIGAKDWAPKIEYPRTRIVRFREPYLTNNIETHRIRGVEVRVYSITKTIADAFRNPKLLDRSVTIEAMKAALGARKATAGQLATAARENAAWNQMRPYLEALASSG* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0050 cloud direct high 500 0.998 GCA_002196965.1_03120 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 50565 50819 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 50566 50820 GCA_002196965_1_114_51 GCA_002196965_1_114_51 + 51323 . 5CEG_C Addiction module antidote protein, CopG/Arc/MetJ MSQTTTMTVRISGALSEFVASNVGENGSYENISEYVRDLIRRDKERAEREAFDRLKAELSRAFAAPEESYRPLTAAEVIARNRG* hhsuite_tools hypothetical_protein C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0051 cloud direct high 254 0.996 GCA_002196965.1_03121 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote CDS 50824 51135 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 50825 51136 GCA_002196965_1_114_52 GCA_002196965_1_114_52 + 51323 . COG3668 Plasmid stabilization system protein ParE [Mobilome: prophages, transposons]. MVVRVQEAASLRLDEIYRYTRERWGIEQADRYLTDLFAAFDQIESHGVASRPIPAEFGVEGFYFRHVHHFVYWRRLSNGDVGIVTILHERMHQMDRFREDLPK* mmseqs_cdd nonviral_gene C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_CDS_0052 cloud direct high 311 0.997 GCA_002196965.1_03122 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote cenote CDS 12600 13772 GCA_002196965.1 NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965.1_NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965_1_147 GCA_002196965_1_147@C1 1 1173 GCA_002196965_1_147_11 GCA_002196965_1_147_11 + 17581 . COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]. MKAILRALRAELAGIFGDPQILSVMMVSLAIYALIYPYPYRPELLREVPVAVVDLDNSAGSRQLARDIDASEAVAVVARPPTMAEAERLVHERRAYGILLVPQGFERELLRGRQSPIAIYADASYFLMYQKALTGIAGPARTTGVQVQVARQLATGTSRTEALSGASPIALVEVPLFNPAGGYATYILPAAFVLILQQTMMMGLGLVATRRAPSADPLPWRMLGRAGAWLGLYALLLPMYLVVLPWAYGLPWLGHLPALAMLGVPFVLAVGFLAQAVAAVLRRAEMVQMVLLSLGMPLFFLSGFSWPIESLPLLLRAAAQAIPSTAMIEGYVRSAQMGAGLAELAPLIRQLWLLAFAYAGLTLLLRLGASGSRLSAARPEVRSQEAGDAL* mmseqs_cdd nonviral_gene C1 4982 12600 17582 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote_CDS_0001 persistent direct high 1172 0.999 GCA_002196965.1_03879 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote cenote CDS 14166 14486 GCA_002196965.1 NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965.1_NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965_1_147 GCA_002196965_1_147@C1 1567 1887 GCA_002196965_1_147_12 GCA_002196965_1_147_12 - 17581 . CDD:pfam05521 Head-Tail-Connector-protein MDAGQLDRRVTFQQAVIIRDPDGMLIQGWEDRFTLWAHVRYLRGSEAVMQARLVSKAPIIITVRRSAQSVGITSEWRAVDGGVIFDLKEDPRPSEDGGFFEMLAEA* hallmark_hmm common_virus C1 4982 12600 17582 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote_CDS_0002 shell direct high 320 0.997 GCA_002196965.1_03881 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote cenote CDS 14489 15016 GCA_002196965.1 NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965.1_NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965_1_147 GCA_002196965_1_147@C1 1890 2417 GCA_002196965_1_147_13 GCA_002196965_1_147_13 - 17581 . CDD:cd08054 Head-Tail-Connector-Protein MRLVLVSPPVAQPITLCEAKAQARVEHDDEDLLLQHYVDAATAWLDGPAGILGRCLVTQTWRAELATVTGHIRLPFPDTVISSAVFTDAEGGELIHELALQDQHPLLRPISGFGRPAAITFTAGYGAPADVPAAIRQAMLLLVTQWYEHRQVTGTGTALPFAIEALLAPYRRVRL* hallmark_hmm common_virus C1 4982 12600 17582 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote_CDS_0003 shell direct high 527 0.998 GCA_002196965.1_03882 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote cenote CDS 15016 15321 GCA_002196965.1 NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965.1_NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965_1_147 GCA_002196965_1_147@C1 2417 2722 GCA_002196965_1_147_14 GCA_002196965_1_147_14 - 17581 . . hypothetical protein MAVKKNEAASKADATVIENDTHGVADPAPAVGLEEASGAIIEPGVTDAVDVSHESVDANPREGTSAVQNAIDWNDPKRVRPDEADFIGQGVDRAVYGKGNE* . hypothetical_protein C1 4982 12600 17582 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote_CDS_0004 persistent direct high 305 0.997 GCA_002196965.1_03883 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote cenote CDS 15376 16617 GCA_002196965.1 NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965.1_NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965_1_147 GCA_002196965_1_147@C1 2777 4018 GCA_002196965_1_147_15 GCA_002196965_1_147_15 - 17581 . PFAM:PF06673.10 Major-Capsid-protein MTMMSHPALTRGIVDVRADASGDPKQIFAELQRSFEAFKAEHSDQLAALRKGQEDVVRAEKVDRINAAVGELQAAMDTQAAQIAALRIGGTAGAPGPVDAAYTDAFRAHFRKGEVSAALNKGADAEGGYLAPIEWDRTITDKLVEVSPMRQIASVQTISGAGFRKLFSAQGFGSGWVGETAPRPQTSTPTFGHLDYTPGEIYANPGATQQILDDAAINLEQWIASEIEAEFAYQEGIAFVAGDGVNKPSGVLTYAEGGSKATAHPWGAIPTITAESATAITADELIDLVYSLPGQAAQNARLVANRNTLASIRKLKDGQGNYLWQPSFTEGQPQNVLAYPVTEMAAMPDVAPGAMPLAFGDFRRGYLIVDRTGVRVLRDPFTNKPYVHFYTTKRVGGGLLNPEMLRVLRMAAA* hallmark_hmm common_virus C1 4982 12600 17582 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote_CDS_0005 persistent direct high 1241 0.999 GCA_002196965.1_03884 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote cenote CDS 16629 17462 GCA_002196965.1 NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965.1_NIPZ01000084.1 GCA_002196965.1|NIPZ01000084.1 GCA_002196965_1_147 GCA_002196965_1_147@C1 4030 4863 GCA_002196965_1_147_16 GCA_002196965_1_147_16 - 17581 . PDB:1TG6_E Putative-ATP-dependent-Clp-protease MTLRHLPKLSVSRPAALAPSEPDGEVMTHWTAGLRSDNPSATNLISMLDVIGADGWTGDGVTANRIAAALRSITADEITVDLNSPGGDFFEGVAIYNLLREDPRKVTVRILGLAASAASVIAMAGDEVQIGRAGFLMLHNAWVVAIGNRHDLAAAAETMIPFDAAMAEVYAAKAGVDPDVAAAWMDAETWFSGAQAIDAGLADGFLTADVVETEASGNGPSALKRIDSLLAKQNISRSERRADRTEIRGTPGAAASVTPRADEGWTALARSLISTLT* common_virus_hmm common_virus C1 4982 12600 17582 GCA_002196965.1|NIPZ01000084.1@region_12601_17582@tool_cenote_CDS_0006 persistent direct high 833 0.999 GCA_002196965.1_03885 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 1100 1987 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 1101 1988 GCA_002196965_1_149_1 GCA_002196965_1_149_1 + 57248 . . hypothetical protein MRICVAVLSIALLSNCVAEDDGSYAETPRERYIANFNYFWDMKSDRGLSFGIAPFYGSFTPKQIWRYDDCGLESECSWDSGYVWAEENSFLMEPYTPDELRGGKFDYAFVDICTLNPFSPLEDRVQYYTFASAEDKNFDVAIGKRESRLAERIFTDQYLNYIDADFRLRADIKSSGLESRDINAVLRDAWLKKRLKRPAALYILDGCGAGELPVKFAFIEPTSRIQLITEFDYRICKESNLDPWNVDQCPSVKDFLGRDASLAGSYRARVTRSSGQVIYREFTVTDDDENRELKF* . hypothetical_protein C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0001 cloud direct high 887 0.999 GCA_002196965.1_03916 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 2736 3035 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 2737 3036 GCA_002196965_1_149_2 GCA_002196965_1_149_2 + 57248 . COG2963 Transposase and inactivated derivatives [Mobilome: prophages, transposons]. MSRRRNHDAAFKARVALEAVKGERTVSELAAEYGVHPTMIHQWKRSLLEGAAGIFERGGKAAAAAEVAEETVRDLHAKIGELAVANDFLSRKLKPWIGK* mmseqs_cdd nonviral_gene C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0002 persistent direct high 299 0.997 GCA_002196965.1_03917 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 3044 3880 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 3045 3881 GCA_002196965_1_149_3 GCA_002196965_1_149_3 + 57248 . PDB:4U7B_B Mos-transposase MVEKNHPSLSVGAQCRLLSISRSSFYYAPQGETAMNLDLMLLIDKQFLEAPFHGVRQMTWHLQNEGHGVNQKRIRRLMRLMRLMPIYQRPNTSKPRKGHKTYPYLLGGLRVDRPGQVWCADITYLPMRRGFLYLVAIMDWFTRKVLAWRISNTLEADFCVEALNEAIHRFGAPGIMNTDQGSQFTSFAWTDRLKRVGTRISMDGKGRCIDNIFIERLWRSLKYECVYLHAWETGSQAKLVLGTGSTSTTIDDPTLPMAGSRPPWSTSTAAKPISRHRQ* common_virus_hmm common_virus C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0003 persistent direct high 836 0.999 GCA_002196965.1_03918 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 4219 4803 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 4220 4804 GCA_002196965_1_149_4 GCA_002196965_1_149_4 + 57248 . PFAM:PF13701.5 Transposase-DDE-domain-protein MPRPTRQSRNAEVDFKGEKRSNATHASTTDPDARLYKKSPGTGAMLCFMGHALMENRNGLIVQGDLTQADGHAERRAALDMIHRHSPGSTRRLTLGADKGFDAAEFVADLRQACVTPHVAQKSRYSAIDARTTRHEGYALSIKHRKRIEEAFGWAKTVGGMAQTVYRGLERVRSRFILTMAANNLARLPRLLAA* common_virus_hmm common_virus C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0004 persistent direct high 584 0.998 GCA_002196965.1_03919 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 5087 6016 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 5088 6017 GCA_002196965_1_149_5 GCA_002196965_1_149_5 + 57248 . . hypothetical protein MRNIFIAITFALACFEAEAQSALLPLHRILQDSIYCEAEISNENTSMRELETCQGVYYCSDGGCIPQWFAVLADRTHERQLFNEISKLPVSRFSKCSDDEVVGPAANGSWSVPKRRMLMPSNLERYCGLAISGFENDVVLWLREKSVVAYWARRFGEGAGSPPAFVTVSGRTFYELRGEGIGRLMSVVEDALEEIIGRPCKTDQNITCSVSLGNGRIVADVLAPATGVSGRAGVWEKSHWEVYPNQMFSDTFSITIDLPVTSIRRWPVNSTKPTTGFTSLDYDDGFEILRNHIAKRISERVDGQVEDWN* . hypothetical_protein C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0005 cloud direct high 929 0.999 GCA_002196965.1_03920 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 6401 7900 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 6402 7901 GCA_002196965_1_149_6 GCA_002196965_1_149_6 + 57248 . PDB:1BCO_A Mu-Transposase MLIVETIAKIRRLHFTEGKGIKTICRDLKLSKKVVRKVIRTGITEFTYTRTVQPRPKLGAWLEELNRLLEINAARASRERLTLIQIYEELRGLGYEGGYDAVRRYASVRARTQSSGASSAFVPLSFAPGEAYQFDWSHEVVLIDGATTTIKVAHVRLCHSRMFFVRAYPRETQEMVFDAHDRAFAFFKGTCTRGIYDNMKTAVETIFVGKERLYNRRFLQMASHYLVDPIACTPASGWEKGQVESQVGTVRQRFFSPRVRVKSYEELNAWLLDKCIASARSSKHPELTDKTVWEVFQKERPHLVPYAGRFDGFHSLPAAVSKTCLVRFDNNKYSVAATAVGRPVEIRAYAERIEIRQEGRLVGDHPRHFGRDRTVYNPWHYVPVLLRKPGALRNGAPFKDWVLPGALEQIRRKLQGSSDGDRQMVKILGAVLTEGMPTVQKACAEALSQGVHSADVILNILSRRRDPEPPPLLLTSPALKLTHEPVADCARYDLLRRAS* common_virus_hmm common_virus C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0006 cloud direct high 1499 0.999 GCA_002196965.1_03921 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 7900 8625 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 7901 8626 GCA_002196965_1_149_7 GCA_002196965_1_149_7 + 57248 . PDB:4M4W_K Replicative-helicase MERADIMAAMGDLKLYGMRAAYDELMAVAVRRQHEPRQIVGDLLAAEINEKKARSVKYQITTAKLPYAREIEEFTFDDTPINETLVRDLASGEFLNQQRNIVLVGGTGTGKTHISVAIARAVIRNGARGRFFNVVDLVNRLEAEARAGRAGRLADHLMRLDFVILDELGYLPFAQSGGQLLFHLVSKLYEQTSVIVTTNLAFGEWPTVFGDAKMTTALLDRLNHCDIVETGNDSWRIKTRV* rep_hall_hmm common_virus C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0007 cloud direct high 725 0.999 GCA_002196965.1_03922 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 8774 8905 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 8775 8906 GCA_002196965_1_149_8 GCA_002196965_1_149_8 + 57248 . . hypothetical protein MNAKLAKGRSLGRIDAAAATVLAVAQGQRMKAAPARKARLQWA* . hypothetical_protein C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0008 cloud direct high 131 0.992 GCA_002196965.1_03923 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 8896 9234 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 8897 9235 GCA_002196965_1_149_9 GCA_002196965_1_149_9 + 57248 . PFAM:PF05766.11 NinG-recombination-protein MGVTRDEWRRYSRPVLKTKRWQVLRHIVLERDGWACVDCGTRRGRLEIDHILPVRTHPELAFDPANCAVRCSSCHTKKTRVECGHPAPIITPERQAWGQLVADLATNPNPAT* common_virus_hmm common_virus C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0009 cloud direct high 338 0.997 GCA_002196965.1_03924 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 9243 10478 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 9244 10479 GCA_002196965_1_149_10 GCA_002196965_1_149_10 + 57248 . PDB:3QPR_G Major-Capsid-Protein MLDSVKIARRQSEIRQALAGLVGKENPTEDETRSMETMDQEYRTNETRYRAALVAEDQERREAGADLETRSDREFAELIGRFELRQVALSLDEGRALSGATAEVVQELRSKGGYQGIPIPLAALETRAGETVAADVPNPKTIRPIIDRIFPNSVAERLGIQRINITAGELAFPVATAGAVFGWQTTELGNVGGPSPFDTTERSLNPDHTGGAQMVISRKALKQAGEGLEQAIRRDMNAAIGAELDRVVVNGSGAAGEPLGIVPGAATYGIPVTAVGATATWAAFRAQIVAFMEANAITAANQVNLGFDPAIWAELDDALITGTAVSEWDRLTKHVGTPAISNVIPDETAILTATVQGVAPGYLGIWGGVDLIRDPYTKAHSGQLVLTGLVTADFTVPRGMQTRILTGIGEP* hallmark_hmm common_virus C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0010 cloud direct high 1235 0.999 GCA_002196965.1_03925 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 10478 11026 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 10479 11027 GCA_002196965_1_149_11 GCA_002196965_1_149_11 + 57248 . CDD:COG3740 head-maturation-protease MLWGGNLGTLEIRAEGGATRLSARFPYGAETELARGRREVIAPRAFADRLEAGGEIHLLSQHDYAKPLASTAAGNLSLRDADDALTIEAEIDGGTTWARDFLAAHGQGLIRGLSPGFRVDQGGERIERRGAGILRTITRAALFEISAVTRPAYPAAQIEARAWQATGYGQPHQVHPLNRWRL* hallmark_hmm common_virus C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0011 cloud direct high 548 0.998 GCA_002196965.1_03926 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 11028 12098 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 11029 12099 GCA_002196965_1_149_12 GCA_002196965_1_149_12 + 57248 . CDD:pfam04860 Portal-protein MGLLSFFTRKTDPVETRAAIQPGFTSALLAAREAWISGASGLGELTAAVQTSVSLWESGLSLADVTGTDLLTRRDMAITARALALRGECLFLIRDRLIPATDWDISTRYGQPRAYRVGLPEIGGGRNETVLAGEVLHFRIGCDAVTPWAGSAPLGRAKLSAQLLEAIETALRDVYQDSPIGSLIVPVPEGSVEDMALMRRSFRGRRGAALVIEGTAQAVAAGMAPNIGKSPDQLSPDLSKTLADRLLTDAKGAIFGAFGILPGLHNPATTGPMVREAQRHLAQLVLQPIANLMAEEATEKLGTPVAIDCVRPMQAFDAGGKARALSTMLQAMAAAKEAGLDPATIKDALAFIDWAE* hallmark_hmm common_virus C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0012 cloud direct high 1070 0.999 GCA_002196965.1_03927 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 12102 12599 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 12103 12600 GCA_002196965_1_149_13 GCA_002196965_1_149_13 + 57248 . . hypothetical protein MLQMPLHLINRRARRAHDARRGRLGEARYNMLVQELARVIRLAFEAGDTGSLFGLEGPLRAGIRSDLCRQGWGWNSADLAARDMLDDAFRVVRAIRPTWNQGQPDWTTEAGTLIGRACCVRCHKGLPEGHHKFCSRICAQSHSAHLGRLRDASENAALDMAVRRL* . hypothetical_protein C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0013 cloud direct high 497 0.998 GCA_002196965.1_03928 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 12599 13084 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 12600 13085 GCA_002196965_1_149_14 GCA_002196965_1_149_14 + 57248 . PFAM:PF05766.11 HNH-endonuclease MDLRNYCKGCGAVLPDGPRAEVREWCGKECYMRAYHDLDKQARLDAKRDRPPCQVCGKPIPPEKISTARYCSLTCQRVRVKARYRLQFPRLCEHCGKPFCAHHDDQRFCSVWCNAQTTFRKHQPRPCQWCGKMIENPRRAAAKYCCSTCAAYAREAAKRGE* phrogs_hmm hypothetical_protein C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0014 cloud ambiguous low 2 0.004 GCA_002196965.1_03928 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote CDS 13368 14234 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 13369 14235 GCA_002196965_1_149_15 GCA_002196965_1_149_15 - 57248 . cd16278 uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry. MSHAPEALRVITADNPSPLTGPGTNTFLLGRASIAVIDPGPDLPAHRAAILAAAGPGRISHILVTHAHLDHSGGARALAQATGAPILGFGPPEAGRSALMQRLARDGGLEGGEGLDHGFNPDIRLTDGQSVETDEWVLTALHTPGHFAGHLSFQWGDQILCGDVVMGWATTVISPPDGDLGDYFRSLSRLENAASRRLLPAHGAPVEAPAPRLAELAAHRRERTAQILAALDRGPGTAESLAAGIYDIPRALMPAARRNVLAHLLALSEIGAIIPEGPLGAATVFRTS* mmseqs_cdd nonviral_gene C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_CDS_0015 persistent direct high 866 0.999 GCA_002196965.1_03930 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 1 467 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 1 468 GCA_002196965_1_52_1 GCA_002196965_1_52_1 - 39181 . PFAM:PF00872.17 Transposase,-Mutator-family MKDDTTITPPHQPGLILEPLTEVAREGAGQMLAAALKAKAANFVAQFNDDLLPDGRQRVVHHGTGPERMIQTGIGPLAVKRHKVRDRAEVPVDRKIRFTSNILPHWARRSSSLDALLLVLYLRGVSTGDFQEALTALLGPDAPNLSPGVSATDSKL common_virus_hmm common_virus C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0001 . unmatched_CDS none 0 0 . GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 530 946 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 531 947 GCA_002196965_1_52_2 GCA_002196965_1_52_2 - 39181 . . hypothetical protein MSTNRHSEAEGWHFFYSPHRIVFPTTQLAAGLRDWEVSEFIEDDEVEPHQMFRKPARPSCTGFGLQPVHQIDDIEEPAPGTIADEALAIRIDRKLNSTDVIDVLSDLFILRGVPEHVRSDHGPEFFATGLWLKMGDGT* . hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0002 cloud direct high 416 0.998 GCA_002196965.1_00807 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 956 2320 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 957 2321 GCA_002196965_1_52_3 GCA_002196965_1_52_3 + 39181 . PFAM:PF13701.5 Transposase-DDE-domain-protein MLGRKERGQLELFITGSLRSLIPDDHVLVRVDQVLDLEWLRAEVGALSCADNGRPGIDPEVAVRLMLAGFLLGIVHDRRLMREAQVNLAIRWFVGHALHEALPDHSSLTRIRQRWGEDVFRRIFTRVVRQCQQAGMVSAETVHIDASLIRANVSMDAPVTRHLDAVEAAHDAAEADHTARDACRSGRFKTLCRTDPDATMATSSSAPLRPACKQHTAVDDLAGVVVDGEIVTGEEHDTGRIDERLDAIEVTLGVTLDRITADTIYGVGRVFAALEDRQIEAVIPPLRSPRRKGAQGLPTERFKYDPQNNVARCPAKKRLTPRNSIKSGKWYRADRRDCTRCPLKAQCLPRGATSRRVHIVTNHAAILRARRKRAASGDDEHAIHTRHRWRVEGAHGTAKTLHGLARAIRRGLENMKIQALLTAVAMNLKKLAAALQFIRSIIENRTPPQIPAAA* common_virus_hmm common_virus C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0003 persistent direct high 1364 0.999 GCA_002196965.1_00808 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 2711 3490 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 2712 3491 GCA_002196965_1_52_4 GCA_002196965_1_52_4 - 39181 . pfam06748 Protein of unknown function (DUF1217). This family represents a conserved region that is found within bacterial proteins, most of which are hypothetical. Some members contain multiple copies. MTYNVQLGSGGYLGWKILERTADRQRAAFEKSTEIQSSRDYFAKNMAKVENVDDLVSDYKLLKVALRAFGLDGDIRNRAFIKKVMEADPDDKKSIVNRLTDKRYLELNQAFKFGSEASSQKVDVQAVSTLYLTRSFEKSIGESHEELELALNAQRELPRLVSSDSSENTKWYSILSSTALRTVFEGAFGLPDSFSQLPVDRQLQEIKNRAERMIGTSDPAALAKAENMEKLIKRYLILSQTDQTSPSSRFSTALTLLRG* mmseqs_cdd nonviral_gene C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0004 cloud direct high 779 0.999 GCA_002196965.1_00809 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 4324 5562 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 4325 5563 GCA_002196965_1_52_5 GCA_002196965_1_52_5 - 39181 . PRK12687 flagellin; Reviewed MSSILTNNSAMVALQTLKTINSGLSKTQSEISTGKAISTAKDNAAIWSIAKTMESDTSAIKTISTGLNTANSTVATARSAVEDISEALDKIKSKVLTAQTASANDRATLQADIDGYVSSIRGVLKTAQFNGVNLIDGSSTADYEVVSSLDRSAAGVSASKISVERQNLSMSGSTAATFGATAITTTAIINNGGTAAGSAAAVAAGATQNISIGTVGAGYSYRIAMPLPGATSGTGTFEYVAGANDSAEDVATKLGNQMSAYLQQNGLSSYSVSVSDNRIRFTNDSAAAVNVTATTATGGTAASGGGLSALNGLSVTSDANAAAALASMEGLIATATKAAANFGLAQNQIENQTNFISKLSDNLTSGIGSLVDADMEEASARLQALQTQQQLGIQALSIANQAPSSILSLFRG* mmseqs_cdd nonviral_gene C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0005 persistent direct high 1238 0.999 GCA_002196965.1_00810 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 5727 6041 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 5728 6042 GCA_002196965_1_52_6 GCA_002196965_1_52_6 - 39181 . . hypothetical protein MSQHLELLTQARQAIETFRPDHAAQMLGRFEAAIVENPPLPSERKRIAAELNRIIGLSGAARDGVASAREQLRELMRLARGLDIYDRDGARTQRNTPGTVIGRF* . hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0006 persistent direct high 314 0.997 GCA_002196965.1_00811 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 6038 6286 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 6039 6287 GCA_002196965_1_52_7 GCA_002196965_1_52_7 - 39181 . . hypothetical protein MQVAPDSPTHSRIDTVQAKVTEGLEKAFLSEMLKYAGPKPMEGGFGGGIGEEQFSSMLTETYASALAKRIDLGLGERTGAAG* . hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0007 persistent direct high 248 0.996 GCA_002196965.1_00812 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 6395 7471 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 6396 7472 GCA_002196965_1_52_8 GCA_002196965_1_52_8 + 39181 . 2RRL_A Flagellar hook-length control protein MPVSPIEATQRPVSSCNLRPCQAAEAGDRFEDLLDSQDVPTASELPQKTQAEPEHEDEEDDSAQDPDVDPAFVPPDDLKIQTCRLAGEDVSVSLDALSGETGESGEILECDAGSGAADILVLSLGAKSQSSARISEDNATVPDNGTPKTDAASGFTPLDPMSAAAEARPREAVDRLSPDSVAPSDLAPPESLEAAESLEAAVEVVLHQGREVRAEMRGTAAAHPPHPTAPHEVTRQIADAVRNSDETRFEITLTPEELGKVRLVISPGERPSVAVYAENRETLDLLRRNADLLDRELRDAGLGGAALSFGQGTAQDGNPRHSGTSFSGHDAGSVRTEDSPQGPRPSQGITLRQLDIRI* hhsuite_tools hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0008 persistent direct high 1076 0.999 GCA_002196965.1_00813 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 7481 8149 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 7482 8150 GCA_002196965_1_52_9 GCA_002196965_1_52_9 + 39181 . PRK12813 flagellar basal body rod modification protein; Reviewed MVTSISGTTAATTSAVSGKSTGFSGSGGDFETFLRMLTTQIQNQDPLNPMESTEFAVQLATFSGVEQQALTNSLLKEMLGNSSGGTLASVAGWIGKEVRTTGPVLFDGSPVTLDIEPAAEADAVSLVVLDAQGKEVSRTSIGTGSGEVDWQGRGDDGALLASGLYQFRVESSKGGTVLSTEDAAAYGMVTGAKLENGAAQLVLAGGATVAAEDVTGIRNAEV* mmseqs_cdd nonviral_gene C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0009 persistent direct high 668 0.999 GCA_002196965.1_00814 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 8507 9706 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 8508 9707 GCA_002196965_1_52_10 GCA_002196965_1_52_10 + 39181 . PDB:1Z19_B Integrase MALTDTKIRNLKPKEKPYRVTDAHSLYLQITPSGGKHWRFNYTHQGKQKTLALGSYPVVSLLAARMERDKAKALLAEGIDPSAAKKADSPAQSPAGETFESVATRWFKVNERKWVAAYAMRLRARMDQDILPHLGSKPVASISPKDALDTIRKIEARGAVEMARRVNQMVSQVFRFAVGEGIIQSDPTRDIGNALAPKPAPKRRSAIPADEIPGFLEKVRAYRGEPAVICGLQLVAHTAVRTQELRMAEWSEFEGLNGKEPLWRIPAAKMKMRRDHIVPLSRQAVAVLKALRALTGHQKWVFLSSVDGAGKPMSNNSMLFAMYRMGWHSRATVHGFRSSFSTWANEQQFNRDWIEVQLAHVDASIRGIYNSALHLPQRREMMREWSDYIDPPGQFDDIL* common_virus_hmm common_virus C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0010 cloud direct high 1199 0.999 GCA_002196965.1_00816 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 9904 12138 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 9905 12139 GCA_002196965_1_52_11 GCA_002196965_1_52_11 + 39181 . PDB:1NLF_A replicative-DNA-helicase MDNMHAAAPQYALDDESLDLLGTDPIPFPSDNRAVALDLAARGLAVFPIRDWGDGDGWKPIGAFPEKASSDRGQVSAWWRKWPDARVGLLTGARNGITVLDVDAKNGKDGTETLADLGFPDLSSVSPCRVRTPSGGWHLVLDYDSDIKNSVSKIGSGLDFKNDRGFIVAPGSFKDGARYVPEGETLRRDSRLPPIPAALKSRAPQHEPFEDLLGRSSVPLVVASHQQREWAQERLTELAENVAAAPEGQRHDTLNSVALLCGGYGAHGALTQGEAKAALIPAALACGLSEREARRTFESAWADGLKKPVDLPGDCEDWFSDEGPKDEKNESASQSKKSKAFTFEWFHEAELPESSPFLIEGLLDQGTASVVYGPSNAGKTFFTLDLCHALANAGCGATWQGRAIERTAVLYMALEGGSKFTLRLKALQRAFGDGGKIPFAYRRGGANLLHKDDKGDVKAIINMAKAMQSDAVAAGLPLLIVIDTLSRALSGGDENAPTDMTAFVGNVDRIREATEAHVMVVHHTGKDIAKGMRGHSSLVAAIDSEIEVIRPDAGSVVQVTVGKQRDHKSDYPFGNFQIKEVALGVDVHGKELSSAVADWGVSQERVAPIELTKKQERVVEIFRTTNGGQAVEREALIAACLNEDVSEAKDPKDRRKGVTSILGALVNKNALALKDGSYRIYSPGDDLGFDDLGDEPSGGTGEHGGTRGECSPAGMASAGGRNGTRPIGRSLFPYDAAELDDDLL* rep_hall_hmm common_virus C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0011 cloud direct high 2225 0.996 GCA_002196965.1_00817 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 12934 14697 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 12935 14698 GCA_002196965_1_52_12 GCA_002196965_1_52_12 + 39181 . CDD:pfam05876 Large-Terminase MGTIEKLRHDALQVLRPPPSIPLSEWCETNITIPQTSSATPGKMRLWKFQQGIADAMTDPGINEIVIQKSARVGFSQLLMGFIAHTVAINPCPILVTQPTTDDARAFSVDTEALFEASPSLRGLISDGADDTGRSTLMRRLFAGGSLEFLSASSPRSFRRKLGKIAIADEIAAYEMSDEGSILDLLRMRTQTFRDRTLVFGGTPIFKGDAVCAMYEDSDQRIYEVQCVECRDFAQIEWKDLHFSKDDLSAGVNWCCPNCGCLVPESRKAEMVDNGRWRATNPENKTRVGFKLNSLISPHWNARWQVIVAEFLKAKSDPAALQAWTNLLLGEGWEATGQGVDESALTLVPVGLDAIPDGALYLTGGCDVQADRLELSTVAWDSEGRGTVLAHEIVYGDPLQNDVWVALSDLIARRFKHPRGGTIGYDKVLVDAGDGVRAASIQSFCRGRAPQVFPSKGVAGWKQPPVTLGKAADKTIRLQLLGVDGLKDRVHRMATAGTLQFAESLPPTYWEQLAGEEIRVRYSRGYAIREWHQITGRRSEALDCAVMALAAKHLIHWNPDRRAEELASPAAPKKAPAVIRSRWLTGG* hallmark_hmm common_virus C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0012 cloud direct high 1763 0.999 GCA_002196965.1_00818 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 14908 15108 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 14909 15109 GCA_002196965_1_52_13 GCA_002196965_1_52_13 - 39181 . . hypothetical protein MTGKGEAAAIAAMQAAITADSIETGPLAQQIADAAHQGDNEFLATIAYWAASAVDSLMERRTETVG* . hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0013 . unmatched_CDS none 0 0 . GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 15163 15306 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 15164 15307 GCA_002196965_1_52_14 GCA_002196965_1_52_14 - 39181 . . hypothetical protein MKPPEWLREDEKREWWRLWRQSFRLIKRMSPRLANQQTVSQTTNCIN* . hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0014 . unmatched_CDS none 0 0 . GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 15593 16183 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 15594 16184 GCA_002196965_1_52_15 GCA_002196965_1_52_15 + 39181 . . hypothetical protein MPEIEPTDPLFTHPEPLTHFRAKDLATALARSGVPYSTSAARIQNYAKANLIHVRGRVGEGKNSPNVYGISDVAAALMLSSLQDLGVADQEVLSYTSSTLYHWYLGQTPRSFHPILAALSDTLCGHEWMLQLRFLRHTQTQERYILRNFGRMTDEPFWQGSENTKSPEWEPVGDILINSGSLHALARLIEPPKGAN* . hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0015 cloud direct high 590 0.998 GCA_002196965.1_00819 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 16195 17550 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 16196 17551 GCA_002196965_1_52_16 GCA_002196965_1_52_16 + 39181 . CDD:pfam05136 Portal-protein MGILSRILNRAPAAPAVQTRRFDGATGGRRGFGMGTFGRINPEIAAAGPQLRSRAAYLAQNNPWVAHAVANWTGALVGSGIMPVSRHPDAATRAALNAYFRDWTDSADAEGRTDFEGLQTSIAQSLVVTGEGLALIVDSDEGPKLRVLPVELLDESKTADLSSDRFIFSGVEMDGNGRRLAYHILPERPASVFVTYAPAQRIDAASVLHVVKPSAPGQIRGASWLAPIILSASDFDQYADALLMSAKVAAMHSGFIVNMNGAGTDPYDGADTPSMEPGTLVRLGMGDDVKFNSPAQLQQADAFLKHNLRQLAAGLGLPDHLVSGDLSGANYSSLRAGLLPFRQRVEQIQYGVLVPQFLGPIWRAVIEDGVLSGRIDAPDFEQNPRAYLSADWLPPKPLQVDPAKDVEATRAELELGLTSRRKAVAERGWALEDLDAEIAAERPLEQKDSKE* hallmark_hmm common_virus C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0016 cloud direct high 1355 0.999 GCA_002196965.1_00820 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 17547 19328 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 17548 19329 GCA_002196965_1_52_17 GCA_002196965_1_52_17 + 39181 . PDB:6WKK_D Major-Capsid-Protein MNNPVLTRHATFLANSYNPEDRTFTAVIATPTPVMRRDAAGPFAEILPPEAFDLTAQTLPVLDSHNTASVRAILGQTLSIRREGDSIVADMRLSSAEDVAPIGQRIADGTLSGVSIGYRVAGWATRREAGQRIKSASRVHLAEVTLTSNPADPNAGVRQAKEGGMPKDVQEQQDDRAALIARVRAAHNLPEEWATRMAEAEDELSDDEIRADGRETALAARAARPQVQIRTATPSSEDPAVIRDRQVDALSARMMGTAPADAARPFMQMGLQDFARDALVRAGQSVATLGREELLTRAMHTVSDFPELLTGAGNRVLANAYQQAQSPLKQLARQRTAADFRPLSTLKLGEFSGLQKVTEAGEIKSITTGEAKESYSLETFGGIFSLSRKAIINDDLGAFARWGEMMGRAAAETETAQLLGLLLANAGAGVLLDDGLPLFHADHGNVATTPGPLELTATADPLSDARLALRKQKGLDGVTPVNVVPKYLLVSPENETNAEKILTAIQAVATADVNAMAGRLQVLVEPRLTGLGWYVFGDPATAPVLEYAYLSSAQGPQLSSRDGWETLGREFRVVLDFGAGVTDHRGAYRNAGA* hallmark_hmm common_virus C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0017 cloud direct high 1781 0.999 GCA_002196965.1_00821 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 19328 19573 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 19329 19574 GCA_002196965_1_52_18 GCA_002196965_1_52_18 + 39181 . PFAM:PF02831.14 head-tail-adaptor-Ad1 MPTRPGQSLIPSVDDLLLYRAALQDARFSGVRTVRDSNGEEVTYRSQSEIELAITRLDAEIAQLQRGRSSLIRMQTSKGIH* phrogs_hmm hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0018 cloud direct high 245 0.996 GCA_002196965.1_00822 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 19573 19902 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 19574 19903 GCA_002196965_1_52_19 GCA_002196965_1_52_19 + 39181 . COG5471 Predicted phage recombinase, RecA/RadA family [Mobilome: prophages, transposons]. MARNHVQPGLVLSIPAPAAVLSGGVVVAGNLVGIAQGDAAAGETVDVALTGVWEIPKTAADSFAVGDRVFWNASTGLATSTVGSNARVGTAAEAAAASTGAVRVRLVQL* mmseqs_cdd nonviral_gene C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0019 cloud direct high 329 0.997 GCA_002196965.1_00823 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 19914 20102 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 19915 20103 GCA_002196965_1_52_20 GCA_002196965_1_52_20 + 39181 . . hypothetical protein MAKMYAKHRIILPDGSEIEPRAVFDATPQQARQFDHLNAARAATEAEIKAAEAAQAKADGLA* . hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0020 cloud direct high 188 0.995 GCA_002196965.1_00824 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 20780 20950 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 20781 20951 GCA_002196965_1_52_21 GCA_002196965_1_52_21 + 39181 . . hypothetical protein MGRRPRRNHSPAFQAKVGVVAIKGEKTMIELAQGFDVHPNQITWRHRPHCSRHLTH* . hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0021 cloud direct high 170 0.994 GCA_002196965.1_00825 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote CDS 21165 21335 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 21166 21336 GCA_002196965_1_52_22 GCA_002196965_1_52_22 + 39181 . . hypothetical protein MADDPKTQRQDQSTYPADMEEERQEPDGLGHDKPKPSDAPPATTTVANPAKVETPD* . hypothetical_protein C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_CDS_0022 persistent direct high 170 0.994 GCA_002196965.1_00826 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 83791 84456 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 1 666 GCA_002196965_1_69_75 GCA_002196965_1_69_75 - 112614 . 6U0O_A Lysostaphin resistance protein A, LYZ2 MAPLAEPEAAIGRFLLGLEFAALYIGAPLAIALFMPGHLLFEALALFSAAGLLLLWFTGGFDWRSLVRGWRRLPWLEILGMIAITTALGALILSFERPGAIFNMARSRPEFMLVIWTFYPILSALPQELIFRPLFFHRYALILPRGRAAIALNAAIFSFAHLMYWSWVVAALTFVGGWFFARAYLKRGFPSAWVLHAVAGNALFTVGMGVYFYSGNVVRPF* hhsuite_tools hypothetical_protein C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0001 persistent direct high 665 0.998 GCA_002196965.1_01210 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 84423 85211 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 633 1421 GCA_002196965_1_69_76 GCA_002196965_1_69_76 - 112614 . CDD:cd06523 GH25_PlyB-like-endolysin MKFFGRMMMVLLVAALAACGGGGGGGSRAVMVGQGSGPAFGDSAPHAWVGGHPYDHPVHGIDISRYQGNINWNAVRSSGVSFAFIKATEGGDHADPNFRTYWQQAALARIPRGAYHYFYFCRSGAQQAAWFIQNVPRERGAMPPVIDLEWTASRTCPYRPPANEVLREAKIFKDILHQYYGQRPIIYTTVDFYRDNNLGSWPEEFWLRSVAGHPRIVYPGQRYSFWQYTGTGIVPGIQGNVDLNVFAGSPAEWRRWLNRRLQ* common_virus_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0002 persistent direct high 788 0.999 GCA_002196965.1_01211 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 86802 89390 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 3012 5600 GCA_002196965_1_69_77 GCA_002196965_1_69_77 + 112614 . PDB:5JXR_A Chromatin-remodeling-complex-ATPase MEQVVDYKNAPGNGYTKTILCFLQLFIVSNRDRTFYFANNNARHFAFNAEERFLPVYEFADVDNKKIVHLDSFAETFLVKCTLGQTISRYMVLVASEQKLLMMRPYQVYAVKAIVDSIAQDCGNGYVWHTTGSGKTLTSFKASTLLKDNPDIEKCLFVVDRKDLDRQTREEFNKFQEGCVEENTNTASLVRRLLSNDYADKVIVCTIQKLGLALDENSKRNKQQKKDGKKSFKEQLEPLRDKRIAFIFDECHRSQFGENHKAIKEFFPRAQLFGFTGTPIFDQNAAQQKIEDTQASMKTTEDLFQQRLHTYTITHAIEDGNVLRFHVDYFKSQGKTLPKPGEPLAKRAVIDAILAKHNAATGQRRFNALLATSSINDAIEYHTLFKTIQAEKLAADPGFQPLNIACVFSPPAEGDPDVKQIQEDLPQEKEDNAVEPEKKKEALKAILVDYNAHYGTNHKIGEFDLYYQDVQKRIKDQQWPESDLRQAYPNLAHHKIDITIVVDMLLTGFDSKFLNTLYVDKNLKHHGLIQAFSRTNRVLNATKPYGNILDFRQQQGAVDAAIALFSGEAAAEKAREIWLVDKAPVVIQKLETAVQKLDTFMKSQGLDCAPEAVPNLKGDAARAAFIEHFKEVQRLKTQLDQYTDLTDEHRNTIEQVLPRDNLLGFRGAYLETAQRLRAQQGKGADKPSQDADQLDFEFVLFASAVIDYDYIMGLIARYSEATPGKQKMSRDQLIGLIQSDAKFMDEREDIAAYINTLKAGEGLTEKAIREGYSRFKAEKNALELAGIAGKHGLATEALQGFVDTILQRMIFDGEALTDLMEPLGLNWKARRVKELDLMADLMPLLLKRAAGREISGLSAYEQ* common_virus_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0003 cloud direct high 2588 1.0 GCA_002196965.1_01213 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 89575 90684 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 5785 6894 GCA_002196965_1_69_78 GCA_002196965_1_69_78 + 112614 . cd17249 Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.EcoR124I TRD2-CR2, S.Eco540I TRD2-CR2, S.Eco540AI TRD2-CR2, and S.Eco540ANI TRD2-CR2. Escherichia coli (R124) S subunit (S.EcoR124I), E. coli ST540 S subunit (S.Eco540I), E. coli ST540A S subunit (S.Eco540AI), and Escherichia coli ST540AN S subunit (S.Eco540ANI) recognize the sequence 5'... GAANNNNNNRTCG ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.EcoR124I -TRD1 recognizes GAA/TTC, and -TRD2 recognizes CGAY/RTCG. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. MLQSDYFGKKIAGDSTDRYLRIRKDDFVYNDRTTKASSFGTIKRLSNYSDGIVSPIYKCFRFQPSENPAFWDWHFESGSHDPALGGLVNEGARAGRFNISVTQFLSTNAWRPDEAEQQKIAECLNSVDALIEAQARKVEALKAHKKGLMQQLFPQDGEIQPRLRFPEFEGAEEWAEKSLDKLATIQAGATPSKANAEFWGGSIPWVSAKDMKRLFLEDSEEHISDDAVSNGARLVPKGTLLLLTRGMTLLKDVPICILSREMSFNQDVKGLRPKAGVNSLFLAWMLLSNKDRLLALVNIAGHGTGKIDSDELKALLLRIPQPPEQQRIADCLTSLDYLISAEVQKLDTLKTHKKGLMQQLFPQVAEGDA* mmseqs_cdd nonviral_gene C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0004 cloud direct high 1109 0.999 GCA_002196965.1_01214 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 90681 91910 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 6891 8120 GCA_002196965_1_69_79 GCA_002196965_1_69_79 + 112614 . COG4694 Wobble nucleotide-excising tRNase [Translation, ribosomal structure and biogenesis]. MSTYKNLKTLVGRLRDDLNNPTKPLSLVLIYAYNRTGKTRLSMEFKDAGKRKNKKNPTGTPDTLYFNAFTEDLFVWENDLEGDSVRRLQLSEKSSFFNAMTELALDETIARYLSRYADFEFDFTYKEVQQGKDTISKPDFVSFRKGGEANIKVSRGEQNIFIWCIFMAICERMLDGHESYQGKKYLYIDDPISSLDDNNAISVACDLSKLLRRAATRKDAEGKPAPIKVIFSSHHALFFNVMCNEVGRKIDDAPSVDHRRYFLHRPSGDGTYTLQATEDTPFFHHVATLAELQRAADPKKGKLYTFHFNALRSVMEKTASFFGHPSIAFCLKALDTDVDRALFNRALNLLSHGAYAIHEPTEMGEDNKELFRRILREFVTRFEFHLPGAAPAPHHAPAPAPVPLEAPAQ* mmseqs_cdd nonviral_gene C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0005 cloud direct high 1229 0.999 GCA_002196965.1_01215 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 91907 93664 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 8117 9874 GCA_002196965_1_69_80 GCA_002196965_1_69_80 + 112614 . pfam02384 N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes. MNDQIQKQLGKTLWNIADTLRGAMNADDFRDYMLSFLFLRYLSDNYESAAKRELGNDYPSDADVAAERARFAARKAEAAQRVSKAWEKARSIDDISFEPRDAGPPEITTPLQLWYSRNPDDAAEFEKQMRRKAHYVIKPEHLWTSIAHMARTQSDDLLNTLQAGFKYIENESFQSTFGGLFSEINLGSEKLGRTYTDRNAKLCTIITEIANGLADFSSDVDALGDAYEYLIGQFAAGSGKKAGEFYTPQQVSDILSAIVTLDSQEPATGKKERLASVLDFACGSGSLLLNVRKRMGPHGIGKIYGQEKNITTYNLARMNMLLHGVKDTEFEIYHGDTLNNDWDILRELNPAKKPSFDAIVANPPFSLRWEPTEVMGDDVRFKNHGLAPKSAADFAFLLHGFHYLKDEGVMAIILPHGVLFRGGAEERIRTKLLKDGHIDTVIGLPANLFYSTGIPVCILVLKKCKKPDDVLFINAAEHYEKGKRQNRLREGLDGKPNDIQKIIETYQFRKEEDRYSKRVSMERIAEEGFNLNISRYISTAVAEAEIDLDATQRELVAIEDQIREATSNHNSFLRELGLPVLPGAE* mmseqs_cdd nonviral_gene C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0006 cloud direct high 1757 0.999 GCA_002196965.1_01216 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 94284 95546 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 10494 11756 GCA_002196965_1_69_81 GCA_002196965_1_69_81 + 112614 . PDB:1Z6A_A Helicase-of-the-snf2-family MDLVFTPSQIETWPLDRLRPYARNAKIHGTDQVAKIAASMAKFGWTVPCMVADDGELIAGHGRVLAATLLGLKDVPVIRLGHLDEAERRAYRIADNKLTELGDWDEAMLREEVAGLLAEDFDLTLLGITDEDLDALLRDPEALGGDGPVEGEDDIPEPPVTPVSVPGDLWQLGAHRLICGDSTSADVVRRLLGEVKPLLMVTDPPYGVEYDPSWRNQAGAAKTKRTGKVLNDDRADWREAWALFPGDVAYVWHGALHAATVAESLTAAGFAIRSQIIWAKDRLVLSRGDYHWQHEPCWYAVRAKGKGHWAGDRKQTTLWAIANRDQDADTVHGTQKPVECMRRPILNNSSPGQAVFEPFMGSGTTLIAAETTGRVCFGVELNAAYVDVAVERWQSFTGEDAMLAETGESFATLKARRLAA* rep_hall_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0007 cloud direct high 1262 0.999 GCA_002196965.1_01217 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 95543 96919 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 11753 13129 GCA_002196965_1_69_82 GCA_002196965_1_69_82 + 112614 . CDD:cd16403 ParB-like-protein MNAPLLPGRIEHWPLARLKPYARNAKTHDADQVAKIAASMAEFGWTVPCLVAADGELIAGHGRVFAAAYLGLAEAPVIVLDHLTDAQRRAYRIADNKLTDLGGWDEALLLEELRGLLAEDFDLGLIGIPEDELDALLQDADNDRAPIDDDAADTIPEAPAEPITRLGDIWALGNHRLICGDATDPNAVARLMEGAKASLMFTSPPYAQQRHYGAAKEKVGDWEALMQGVFAAAPVSEAAQLLVNLGLVHRNSEWIPYWEGWVDWMRKSGWRRFGWYVWDQGPGLPGDWQGRLAPSHEFIFHFNRQPRKPNKTVESKHAGETLGGGGLRGADGTVQAKTGSGNAIQSHRIPDSVFRIMRHKGGLGAAGSHPAVFPVALVEAVLTAFSDPGDLVFEPFCGSGTQIIAAERTGRGCFAMELDPVYCDVAVRRWELATGRTAGRVGHQDAAETQPRRRRKPA* common_virus_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0008 cloud direct high 1376 0.999 GCA_002196965.1_01218 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 96916 97131 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 13126 13341 GCA_002196965_1_69_83 GCA_002196965_1_69_83 + 112614 . . hypothetical protein MTQSRRMSLVEAATNVIVGYALAVGMQILVFPVFDLHIALGDQLAIGLAFTGVSLVRGYVLRRLFERWRRV* . hypothetical_protein C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0009 cloud direct high 215 0.995 GCA_002196965.1_01219 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 97176 97373 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 13386 13583 GCA_002196965_1_69_84 GCA_002196965_1_69_84 + 112614 . . hypothetical protein MSDGWQHIEINDHGTIVVLRPISDEGRAWFEDNVGDPEPGGIYTCEPRMAQDILQAAARDLLSWQ* . hypothetical_protein C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0010 cloud direct high 197 0.995 GCA_002196965.1_01220 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 97425 97991 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 13635 14201 GCA_002196965_1_69_85 GCA_002196965_1_69_85 - 112614 . pfam11994 Protein of unknown function (DUF3489). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important. MSSLTETQSLILTAGARRPGNLALPLPGRLAGAAAKMAVGRMIERGWLEELEADRRRGEPLWRETGDGHGTTLVVTVAGLMAIGIEPVVAHAVASARNAKPAPEPQQATEAADTAKPVAIRAGTKQAQIIAMLQRPEGATVAEMVTATGWLAHSVRGLISGALKKKLGLPITAEKVEGRGTVYKLAIA* mmseqs_cdd nonviral_gene C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0011 cloud direct high 566 0.998 GCA_002196965.1_01221 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 98084 98314 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 14294 14524 GCA_002196965_1_69_86 GCA_002196965_1_69_86 - 112614 . . hypothetical protein MTTRRATASNDSALAAFLAAKADIDSMLERLTVFSDDHFGTQPDEITWGDVGTLQHYAGLLRQITDRAFREGEHAA* . hypothetical_protein C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0012 cloud direct high 230 0.996 GCA_002196965.1_01222 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 98432 98968 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 14642 15178 GCA_002196965_1_69_87 GCA_002196965_1_69_87 + 112614 . PFAM:PF13591.5 terminase-small-subunit MEGMSEREYSVHSGLSRGAIQKARKTGRLVVHGDGSINAAASDARRAEMTDPDQQRRSTGGDAGFSGPADSSSYLKARTALTVYQAQERQLAIQKKKGTLVDRAQAETLVFRLARQERDVWVTWPGRVAALMAAQIMAEVEGQTGASVTIATAIMQRVLEAHVREQLDALADLRVSLG* phrogs_hmm hypothetical_protein C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0013 cloud direct high 536 0.998 GCA_002196965.1_01223 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 98916 100973 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 15126 17183 GCA_002196965_1_69_88 GCA_002196965_1_69_88 + 112614 . CDD:pfam05876 Large-Terminase MSANSSTPSPISGCPSGNDDDLTDRDLTEGLDLGFDGAEDILRAWRRGMRPDPNLTVSEWADQHRWLSSRASAEPGRYRTARTPYLRGIMDALSPSHPAQRISFMKAAQVGATEAGNNWIGFVIHHAPGPMLAVLPTVEMAKRSSRGRLDPLIADSPALRERVNPARSRDAGNSMLSKEFPGGILVLTGANSATGLRSMPARYVFLDEVDAYPASADEEGDPVTLAEARTTTFAHRRKVFMVSTPTIRGLSRIEREFEASDQRRYFVPCPHCGAMQWLQFERLRWAKGKPETAIYHCEGCERPIAEHHKMDMLARGEWRATAVGGDPNAIGFHLSALYSPLGWKSWADIARDWLAAQGSEEMLRAARNTLLGETWVESGDAPEWQRLADRREARAGASIPASGLFLTAGADVQKDRVEVDVWAWGRGLESWLVDHIVIPGGPDDPACWDKLTALLGRTWTHANGAVMPIARLAIDTGYEAAAVYAWARRQGFDQVAPIKGLEGFNRAAPVSGPTFVDATIGGKRLRRGARLWSVATATFKTETYRFLRLDRPSDEDRALGVVDAPGTVHLPEWIDTEWLKQLVAEQLVTLRNKRGYAHQEWQKMRERNEALDCRVYARAAAWILGTDRWDEATWRRLEAQAGVETRMPSAVPTETATPEPAQPKAGSLTTPRRKRRAYTPSFMRD* hallmark_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0014 cloud direct high 2057 1.0 GCA_002196965.1_01224 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 100975 101190 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 17185 17400 GCA_002196965_1_69_89 GCA_002196965_1_69_89 + 112614 . PFAM:PF02831.14 head-tail-adaptor-Ad1 MDLERMRALRAALQEARYAGVRSVSYDGKTIAYGSDAELATAISDLETRISTATSGAPRRRRWGTFASKGL* phrogs_hmm hypothetical_protein C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0015 cloud direct high 215 0.995 GCA_002196965.1_01225 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 101194 102708 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 17404 18918 GCA_002196965_1_69_90 GCA_002196965_1_69_90 + 112614 . PFAM:PF05136.12 Portal-Protein MAFEAFRQRIGSIIGGFDAAQSHRRMRGFRASRAHVNTLIAASGDTITARARWLVRNNGYASNAVESFASNVVGDGIKPSSSITDAALKEQLQALWLAWTDDADAEGLTDFYGLQRRAAREVFLSGEVFVRIRMRRAEDGLTVPLQLQMLPSEMLPLDMNRTLPGAGMIRQGIEFDPIGRRVAYHFLRRHPGDLTDPGLAGETVRVPASEVIHVLDPVEAGQLRGVSRFAAAIVKLFTLDLYDDAELERKKIAAMFAMFITSPAPETALEPAEEDLEVEPGQVVRLDPGEDVSTPATPDSGSTYEPFQYRTLLQIGAALGVPYGYLTGDTAKGNFSNTRIALVDFRRRISAFQHSVMVFQLCRAVWSRWMDVAVLSGALDLPGYDSRRQHYQACAWLPTKWDWVDPMKDASAEILQIEAGLKSRTQALSERGFDAEQVDREIAAERKRELALGLDFCRPGSPAKGPGAAGSNGDGDAGADPRNTGEGEDEPEDADAKPDPEEDE* hallmark_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0016 cloud direct high 1514 0.999 GCA_002196965.1_01226 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 102708 104033 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 18918 20243 GCA_002196965_1_69_91 GCA_002196965_1_69_91 + 112614 . cd07022 Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. MHHVQIAQRAFNTPLMVEPAKALAFLSGLGPRITGREITLHGLEVAAADQAGAALPARASLFGNDLAQRRQRNGIQPYALVDGIAVIEIAGTLVHRGAWIGQSSGLTSYEGIAAQLQAALADPGVRGIALDVDSFGGEVAGAFDLADRIRAARTQKPVRAFVAEHALSAGYALASQADRIILPRTGAVGSIGVVALHTDMSSALDQKGIAVTLVHAGARKVDANPWQPLPAVVRDQMQAELENLRVLFARTVADGRGDRIDAARALSTEAAVFRGEAAVLAGLADEVADPVTAFRAFAAAPCDSRPTTHRHITPKGKAPPMSTDSDDDPPAALQQPAAAPAPAASPAAETPGANAMPSVDAIRAEAAEVAQVCAQAARLGVTIDAADAVTRGLKPEALRAKVLADLAARSDAAGIVATAPAATARESPIVAAAKKAAAASR* mmseqs_cdd common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0017 cloud direct high 1325 0.999 GCA_002196965.1_01227 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 104075 104455 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 20285 20665 GCA_002196965_1_69_92 GCA_002196965_1_69_92 + 112614 . PDB:1TCZ_D Head-decoration-protein MPVLTEPPSMGDVLKYEVNPNYTRETVTLLMGMPYPAGSVLGRITVNGKYTLSAATGADGAQTAVGVLLYPVNATLADAVGIVVARGPAIVSRAALAYEATVNDAAKITAKLGQLASAGIIARDGV* hallmark_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0018 cloud direct high 380 0.997 GCA_002196965.1_01228 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 104510 105970 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 20720 22180 GCA_002196965_1_69_93 GCA_002196965_1_69_93 + 112614 . PDB:3BQW_A Major-capsid-protein MTLVRNPFDAGGYSLAEMTQAINILPNPYTRLAQLGLFRFEGVSQRSVIIEQYEGVLNLLPSVPLGGPATVGTREGRSMRSFALPWIPHDDVILPADIQGQPALGAFDAADPLVEVMNRKLLLMRRKHAQTREYMEMNALRGIVKDGAGTILYNYFTEFGLTQISVDFVLGTAGTDVQGKVREVLRAVEDNLLGESMTNVHALVSREFFDKLIAHPKTEEAYKFYAATGAQPLRQDMRRNFPFAGIVFEEYAGAVTLSTKATERLVPANEGIAFPLGTMDTFTTYGGPANLLEAANTMGLPLYARQHLDEKGRWIDLMTEASILPWPWIIEARSALGRHEVRDRSWLMGWLKRDGRGLGDPSRNPWCGDFVETCIRIALPDEPLLGALGSNPYWARNWLLFGQEVTPTPGAVLVFSRGSGGHVGFAVGQDDTHFHVLGGNQSDAITIARIARSRLLGARWPATVPPRARPLPTMKPGELLTTTNEA* hallmark_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0019 cloud direct high 1460 0.999 GCA_002196965.1_01229 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 105986 106153 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 22196 22363 GCA_002196965_1_69_94 GCA_002196965_1_69_94 + 112614 . . hypothetical protein MLKPAILALIRQVLTVAGTALVAKGYIQASDVEPVIGAMLTIGSVVWSVADKRVR* . hypothetical_protein C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0020 cloud direct high 167 0.994 GCA_002196965.1_01230 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 106474 107034 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 22684 23244 GCA_002196965_1_69_95 GCA_002196965_1_69_95 + 112614 . COG4186 Calcineurin-like phosphoesterase superfamily protein [General function prediction only]. MAHFFTADTHFADDPVRRFFRRPFASIEAMGAAMIVRAGVVGADDDLWIIGDFAACETEAGRMAAQAAFAALPGRKHLVRGNHDPDWLVRALPWASVHDLVEIRIGERRFVLCHYPLVTWNGARDGAIQLFGHVHTRWRGAEGQVNVGVDQWDFAPVSTDQAELEAMLLPPSQLHEVAEGVGLAAE* mmseqs_cdd common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0021 cloud direct high 560 0.998 GCA_002196965.1_01231 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 107129 107716 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 23339 23926 GCA_002196965_1_69_96 GCA_002196965_1_69_96 - 112614 . . hypothetical protein MTTGETIWQSAQNLLRSSENLDKLCEAFSVIECDEKKLVIEHSDEGSQDNGWIYPVWEAYYKVRQAPNGKKRDVGWITLAIQLTCDVGVEGDWQHGKRAKVLAGYSPSKDFDDAWGFDSEDPNSSGYVDECTTDEYRWLHSDKVSWFFAVPLDALTSTDDVEKYITTPMRRLVQDETPDEVLGAIRNNLCLPPQA* . hypothetical_protein C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0022 cloud direct high 587 0.998 GCA_002196965.1_01232 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 107713 108459 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 23923 24669 GCA_002196965_1_69_97 GCA_002196965_1_69_97 - 112614 . PF14281.6 PD-(D/E)XK nuclease superfamily MLHAINAKKARLDRVIDGVGKQPREDLITSALFGTIQFLSAPAQKLALKALIGQELRGDAEIFLWPYLRHPEENAEPDVVLRIRTDDGPVYWIVEVKWGAPLGDEQVGREVRTLRDGECRRGGLPAENRNVIGYTLLGAEMKHTEAMQVAEGEFPKLTFRSLTWPAVTERLRRLSTKKNDDPGLISWTRTAEDFLRGTPKGSVLGSWPPDVMMPPAASFTFAAGRQFDSGNAVGSVPAAQFNFTERHK* hhsuite_tools hypothetical_protein C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0023 cloud direct high 746 0.999 GCA_002196965.1_01233 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 108492 109442 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 24702 25652 GCA_002196965_1_69_98 GCA_002196965_1_69_98 - 112614 . COG2378 Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains [Transcription]. MRYSRQEDLLRLALMMQGSAEGLSIADIERAFYVSRRTAERMRDAVLRAYPQLEERPGPNGQKYWRFPTGTLGRMEEPTLDELTAGHRAVSIARREGDFATAETLEHLLAKVQAMFRADRRRRVAADLEAQLLADGVAFRPGPRERIAPDILSALREAILAGVMISADHRARASGRLSRGTRLGPIAMLLGEGRQYLLAWSEYQDDLRLFALAGFERIALEDDIYECPEGFDLQDWLAESFGIWREEPQDVEWRFLPEVADEAATYVFHPRQESERLADGSLVVRFRAGGQQEMEWYLARWGENVEVVSKGNLNDM* mmseqs_cdd nonviral_gene C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0024 cloud direct high 950 0.999 GCA_002196965.1_01234 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 109492 111501 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 25702 27711 GCA_002196965_1_69_99 GCA_002196965_1_69_99 - 112614 . PDB:4M4W_K Replicative-helicase,-DNA-primase MTSEKYLALGLVATLAERFGPGSKIAKELPGWIEYLTDAECPERPRTRAGAAWWGRVRDLLDDLCKEAAGGDSNVVRTNATRIGQHFGLTAIEVRVLEFFADYRTFDMFEHVVDQALETREVTLPFLIAQFSGAEQGEIRAALRPDARLKASGLLQNEGRNWSSQRVPYAVSPRLADAMLADVDDIEDLVALLFPPAPLPDAEWQDFEGMSESADLMRKLLTNALANGTPGVNILLYGAPGTGKTEFCKVLAREVGARLRAVGETDDSGDEPSRGERLAELGIAGRMLSARRDAVLLLDEMEDLFGGAVPQSFRPERISKVFANRLLETNPVPILWTTNAIDSCDPAFLRRMTFSVEMRTPSEQVRKRIWQRLADRHQPVAETGALIALAGIHDHPPALVSDAMRVARDCGGGIETFTQVLGASAKLTNGGIAPPPQHHSEVAWEPALANTDTSLALLESQLRRASQPLRISFCLDGPAGTGKSAWARHLARQLGLPVHQKRASDLLSMWVGSSEKAIARAFAEARADGALLIFDEADSLLADRRNAAHQWEVSQVNEMLTWMEGHPLPFVCTTNLVEHLDPATQRRFTFRIRFDWLREDQLPLAWSTHFAAPVHADVMSIDRLAPGDFANVARRMRALGQDDPAAILGELRRESEAKEGKARPIGFGC* common_virus_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0025 cloud direct high 2009 1.0 GCA_002196965.1_01235 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 111684 111950 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 27894 28160 GCA_002196965_1_69_100 GCA_002196965_1_69_100 + 112614 . pfam01527 Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family. MKRSKFTEEQIIAILREQEAGAKTAEVCRRHGISSATFYAWKAKFGGMEPSEAKRLKALEDENAKLKRLLAEAMLDNTALKDLLSKKW* mmseqs_cdd nonviral_gene C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0026 cloud direct high 266 0.996 GCA_002196965.1_01236 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote cenote CDS 111944 112441 GCA_002196965.1 NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965.1_NIPZ01000018.1 GCA_002196965.1|NIPZ01000018.1 GCA_002196965_1_69 GCA_002196965_1_69@C4 28154 28651 GCA_002196965_1_69_101 GCA_002196965_1_69_101 + 112614 . PDB:4U7B_B Mos-transposase MVTPAARREAVAHLEQGYEMSERRACSLIGADRSSVRYLHRRTTDAELRDELRKAAETHRRFGYRRLHVILRRDGHVLNRKRTQRLYREEGLSVRRRRSRKRAIGTRAPLVTEALANARWSVDFVQDQFADGRRFRILNVIDDVTKEAWLPWSTPRFPAAGLPGN* common_virus_hmm common_virus C4 28824 83791 112615 GCA_002196965.1|NIPZ01000018.1@region_83792_112615@tool_cenote_CDS_0027 cloud direct high 497 0.998 GCA_002196965.1_01237 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 6103 7827 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 1 1725 GCA_002196965_1_87_7 GCA_002196965_1_87_7 - 64552 . cd17261 Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli str. K-12 substr. MG1655 S subunit (S.EcoKI) TRD2-CR2, Escherichia coli A58 S subunit (S.EcoEI) TRD2-CR2, and Aminomonas paucivorans S subunit (S.Apa12260I) TRD2-CR2. Escherichia coli str. K-12 substr. MG1655 S subunit (S.EcoKI) recognizes 5'... AACNNNNNNGTGC ... 3', Escherichia coli A58 S subunit (S.EcoEI) recognizes 5'... GAGNNNNNNNATGC ... 3', and Aminomonas paucivorans S subunit (S.Apa12260I) recognizes 5'... GCCNNNNNCTCC ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.EcoKI-TRD1 recognizes AAC/GTT and S.EcoKI-TRD2 recognizes GCAC/GTGC, S.EcoEI TRD1 recognizes GAG/CTC and S.EcoEI TRD2 recognizes GCAT/ATGC, and S.Apa12260I TRD1 recognizes GCC/GGC and S.Apa12260I TRD2 recognizes GGAG/CTCC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. MNAERLLALYEKVAEAPDAVPRLRRFVLDLAVRGKLVPHDTSEGQGAVLLKQIADAWKARLASGEIKKIVKWPKVSAEDVPFDVPSNWALVRLGEAMDLINGRAFKPSDWTQEGLPIVRIQNLNNASAPFNRFDGDVRPRFLIDTGDFLISWSGTPGTSFGAHIWDRGPAVLNQHIFKAVLLGEAFEKAFLKIAINSRLLELIEQAHGGVGLQHITKPKLEAVALTLPPLAEQRRIVAKVEELMALLDRLEAARGQREATRDRLTTASLARLTASDTGPDADPADFPANARFALATLPALTTRPDQIKPLRQTILNLAVHGKLVDQDTTDEPVSSLVERIWSEQEAAKKQRAEPDMTLVDFSIPSHWIWQSLDGVLTDGPQNGLSPRKSERKDAPKAITLTATTSGAFDAQQFKNVDVSLADAARYWLEPGDLLFQRGNTREYVGMAAIYDGPPETFLFPDLIMRVKVSPHVDIRFAHLWCIAPFARHFLSANATGAQQTMPKINQGILRSLPIPLPPLAEQHRIVAKVDALMALCDRLATALATADSTRARLLEALLADALDPASMHEKEAAE* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0001 cloud direct high 1724 0.999 GCA_002196965.1_01850 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 7824 9281 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 1722 3179 GCA_002196965_1_87_8 GCA_002196965_1_87_8 - 64552 . COG0286 Type I restriction-modification system, DNA methylase subunit [Defense mechanisms]. MIVRTTVKSIQDIMRQDVGVDGDAQRISQLTWLFFLKIIDDQDQELEITRDDYRSPIHERFQWRNWAADPEGITGQAMLDFVNDELFPALKGLQVSAKPGDRRRVVRDVFEDAYNYMKSGQLLRQVVNKINQVDFNNLDERRHFGEFYEQLLNDLQSAGNAGEYYTPRAVTAFMVQMVDPHPGETLFDPACGTGGFLTCSIRHMEEKYVRTPAQRETMQGALRAVEKKQLPHMLCVTNMLLHGIEDPSFVRHDNTLARPYISYTASDRVDIVLTNPPFGGREEDGIESNFPQHFRTRETADLFLALIIRLLKTNGRAAVVLPDGSLFGEGVKTRLKEHLMEECNLHTIVRLPNSVFRPYASIGTNLLFFEKGAPTRDIWFWEHRVPEGQKAYSMTRPIRLEHLADCAAWWGGPRREGRVETERAWKVSAEEVKARGYNLDIKNPHTVAEDHGDPETLLEDLTNAEAEVAALRDQLKAILSEALAR* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0002 cloud direct high 1457 0.999 GCA_002196965.1_01851 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 9285 11744 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 3183 5642 GCA_002196965_1_87_9 GCA_002196965_1_87_9 - 64552 . PDB:1RIF_B DNA-helicase MDKRSLTERDICTKFILPAVKRAGWDEMVQVREEVYFTKGRIIVRGKLVTRGKAKKADFVLYYKPNIPIALIEAKDNSHSVGDGMQQALDYAETLKIPFVFSSNGDGFVFHDRTGASSPRELNLGLDAFPSPADLWARYRAWRGLDGESEEIVLQDYHDDGSGKEPRYYQVNAVNAAIEAIAKGQDRVLLVMATGTGKTYTAFQIIWRLWKSRRWNPEGNKRVLFLADRNVLIDQTMVNDFRPFGAAMAKLSTNAKTIERQDGTSVDLTLALDRKRRIDTAFEVYLGLYQAITGPEERQKLFKEFSKDFFDLIVIDECHRGSAAEDSAWREILTHFSGATQIGLTATPKETEYVSNTEYFGEPVFTYSLKQGISDGFLAPYKVIKVHIDRDVEGYRPEKGQLDRDGNEVEDRIYNAKDFDRTLVLDDRTLLTAKKITAFLKESGDRYQKTIVFCVDQEHAARMRQALINENSDLVTENARYVMRITGSDKEGQDQLGNFIDPESKWPVLVTTSRLLSTGVDAQTCRLIVLDREIGSMTEFKQIVGRGTRVHEDTRKFYFTLIDFRGATAHFADPDFDGDPVQIYSPGADDPMTPPDEEPATPEGEDAIPPTPGEDETIVDQPGLPLPPGDPVRKIYVDGVGARIIAERVEYLDENGKLVTESLRDFTKNALRKRFASLDEFLKRWNAAERKQAIVEELEAEGLALDAIADELGKNLDPFDLICHVAFDAKPLTRRERAENVKKRDVFTKYGPQARAVLDALLEKYRDEGVLNLDDANVLKVTPFTDMGSVVQLINAFGGKAGFEKAVHELQDALYQETA* rep_hall_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0003 cloud direct high 2459 1.0 GCA_002196965.1_01852 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 11750 11962 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 5648 5860 GCA_002196965_1_87_10 GCA_002196965_1_87_10 - 64552 . PFAM:PF12910.6 antitoxin-from-a-toxin-antitoxin-system MQTLSAKDAKYGFGRLIDLARAEPVAVAKHGRPVVVVLAVEEYERLKRLDVQEKNFAGEAASSNEEQGGG* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0004 . unmatched_CDS none 0 0 . GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 12053 12442 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 5951 6340 GCA_002196965_1_87_11 GCA_002196965_1_87_11 - 64552 . PFAM:PF07506.10 recombinase MTRGTPIPDSLTIHVPFRIVKRGGRKEMQLPVGTTAPRAPDNTLVKALARAFRWKRMLESGEFTTIAELAEREGIATSYMTRLLRLTQLEPGIIEAVLDGRQGDAVTLARLMDPFPISWIEQKNTFLGT* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0005 cloud direct high 389 0.997 GCA_002196965.1_01853 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 12439 13764 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 6337 7662 GCA_002196965_1_87_12 GCA_002196965_1_87_12 - 64552 . PDB:4BQQ_A Integrase MTKPPEKSKVVRKLRCAVYTRKSSEEGLEQEFNSLHAQREACEAYIASQRSEGWVLVRDQYDDGGISGGTLERPGLRRLLEDIEDGLVDVVVVYKIDRLSRSLADFAKLVEVFDRNGVTFVSVTQSFNTTTSMGRLTLNILLSFAQFEREVTAERIRDKVAASRKKGMWMGGVPPFGYRVENRKLVVDEEHAEHVRWIFARFLEIGSCTDLAREVGARGIRTPRGNRIDKKYIYRMLSNRAYIGEAVHKGDSYPGEHDAIINRETWDRVHAILQDSPRKRAARTRSDTPALLKGLLFGPDGAAFSPTHTRKGDRLYRYYVSQTVLKHGAGSCPVGRVPAGDIEAAVIDQLRAVFRQPEIVAGTLRAGRTQDEEITEADARAALQQLDPLWDELFPAEQARIVALLVERVDIGTGGLNVRLRIDGLGGLTREMLAGHMGAAA* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0006 cloud direct high 1325 0.999 GCA_002196965.1_01854 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 13761 14216 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 7659 8114 GCA_002196965_1_87_13 GCA_002196965_1_87_13 - 64552 . pfam11149 Protein of unknown function (DUF2924). This bacterial family of proteins has no known function. MNKPDPIPARLAALKTTPTPDLKQQWRDLFDSEPPPFNRRYLESRLAYRIQELAYGGLKPETVRRLERLGEELDGGDRTKRSIRSDRDRPITGTRLLREWQGVEQIVTVTADGFEWQGRPYKSLSAIARAITGTRWNGWVFFGLKNHRGRT* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0007 cloud direct high 455 0.998 GCA_002196965.1_01855 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 14562 16733 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 8460 10631 GCA_002196965_1_87_14 GCA_002196965_1_87_14 + 64552 . . hypothetical protein MSRKYQNIGRETLEIVEITPLPLLQEIIDFREAESEPSLGIELPIVEDDDDVRIAALEQLNEGAAEALRPLEDRCRRIRRLSIGKGPTSLEHVAKQRLSHEEYETFVNEPNELCRSIWVYLRYPEEFEDAEAFYAARQYRDHGKMYDSFEADVEGTIADAAGAIDQDALASLLTARLELPSKVSIRTLDLPKTANHPASVMVIVRHAGPLSSVFSHRDNGMRGTIYYRPPNEATLIWTPDDKVMEICGPSPQVRKKVGDGFAEVVLGADLSKKPLNWRHYDLSPFHESLSLTLPPWDDVEISAAQLIEVEMRLGSWSRRLSLRVTIDDDIEDIAKRYLGGSELLKHVEGFSRLIVAVRYSRTGYKKPRSLEISFGDRRSNLQSKSDPDERDLGYRLLQFWGVLNRLRELDHNEVAQLLPHLLELHDSPEDDISGGHLRRIGLDAKRLLDAGIISLRSRQNIILIDDEDDFGDVEVGPGSKPTEATATGSFGEELGAIPLHDMRQYVIKRDWLEETLITALKPMIGRSSFESLDPDLGYLGRWRAEDSDLPLYFARRLGQPRTLQRLDVTLRSRQDAGIGIVLTAGQTPFKHLGPNVVIPLAEALHEGRVDDEAMRKLLDRFQANRWLALGGAEVALPKYGSQSAMLYIPGKAPLPVSGHKQMSILDRLVAAHKAGRADVPTGEVIEGTGVASPADAWPSASRKTVAGVYIENNRRGHWRLKTD* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0008 cloud direct high 2171 1.0 GCA_002196965.1_01856 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 16843 17088 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 10741 10986 GCA_002196965_1_87_15 GCA_002196965_1_87_15 + 64552 . PFAM:PF14205.5 lipoprotein MPTPFPSRQAAPTSWTGAATTKPTTSNAEWRCTRCDKLLGVCRDGRMHLRFARGHEYLVGFPVQATCRGCGTLNNATAPAR* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0009 cloud direct high 245 0.996 GCA_002196965.1_01857 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 17188 17910 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 11086 11808 GCA_002196965_1_87_16 GCA_002196965_1_87_16 + 64552 . PFAM:PF07638.10 RNA-polymerase-sigma-factor MSFAWHEIRDHLMHSSTNLHFQRSFDAVRRAQAALAPFRDPAALLDGLHRTTGDPARKNVILSALVGAAQGDGPASDCALTLLLLALWPGLDAIRRRSIWRRIGTADEVASDVLARTTEAVRGLDLGRVNWIAATVLRNVERDMIRVRRRDQTREHLASGADPDEVADNGDSGIGAAGYARLNGAVRKLLGDDALLVIRVAIEGFSQAEVAVELGLTEAAARKRYQRAMRRLHDALEEIP* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0010 cloud direct high 722 0.999 GCA_002196965.1_01858 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 17995 18189 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 11893 12087 GCA_002196965_1_87_17 GCA_002196965_1_87_17 + 64552 . . hypothetical protein MNRTADLSLEDFRRLPGLYRRWELTEVCEPNRNYQIEDAGAHADGTPLLAIYVAEPAPDVREAA* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0011 cloud direct high 194 0.995 GCA_002196965.1_01859 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 18189 18524 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 12087 12422 GCA_002196965_1_87_18 GCA_002196965_1_87_18 + 64552 . . hypothetical protein MGLLDHIISRRTAMPDQPDAISRLRKASYALEDLPATIAFPQRAGDEPREPLPVVEATVDEIAFAIVEAERESTAAYRRADALKRLYKLAREAGCIGADRAAAAVMKKEGQ* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0012 cloud direct moderate 296 0.881 GCA_002196965.1_01860 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 18524 19399 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 12422 13297 GCA_002196965_1_87_19 GCA_002196965_1_87_19 + 64552 . PFAM:PF13479.5 AAA-domain-protein MALPIIGADERLAQRKGIKGVIFGRSGIGKTSLLWTLNASTTLFLDLEAGDLAVEGLEIDTLRPRTWKECRDFAVFIGGPNPALREDQPYSQAHFDEVCGRYGDPTVIGKYETVFIDSITVAGRLCFQWCRGQPEAFSEKTGKPDIRGAYGLHGREMIGWLTHLQHTRGKHVWFVGILDERLDDFNRKVFQPQIDGSKTGLELPGIVDQVITMADIPDPGGQPQRAFVCQTLNSWGYPAKDRSGRLDMVEAPHLGRLMEKIQRPAAPASERLTWPPVTPADPAPAQEPGHG* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0013 cloud direct high 875 0.999 GCA_002196965.1_01861 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 19501 20124 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 13399 14022 GCA_002196965_1_87_20 GCA_002196965_1_87_20 + 64552 . . hypothetical protein MSGPWNDFNSAQSNTNVIPKGTLAKVRLTLRPGGFDDPSQGWTGGWARRAATGAVYLDAEYTVLEGPYARRKVWSLIGLYSPKGPDWANMGRGLIRGILNSARGVSDKDNSPEAQARRRINGFGDLDGVEFVARIDIGTDTNGEDKNEIRAAVTPDHRDYAALMGTVPPQFTAAPAQGHASQQPTTPTQPSQPASAPGAAGRPSWAQ* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0014 cloud direct high 623 0.998 GCA_002196965.1_01862 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 20139 21827 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 14037 15725 GCA_002196965_1_87_21 GCA_002196965_1_87_21 + 64552 . PDB:5JXR_A Chromatin-remodeling-complex-ATPase MRLRPRQKTFVERSVAALASRGNTLGVAPTGAGKTIMLSAVTGEMIGDGAKACVLAHRDELTAQNRAKFQRVVPGVATSVIDATEKSWNGQVAFAMVPTLARASNLADMPRLDLLVVDEAHHAVADSYRRIIDRVREANPDARIFGVTATPNRGDKKGLREVFDNVADQVRLGELIASGHLVPPRTFVIDVGVQDELRSVRKTMSDFDMAEVAGIMDRAPVTDEVIRHWKEKAGDRQTVVFCSTVAHAEHVTDAFRAAGVSAALIHGDLAAETRKAILADYAAGSIRVVVNVAVLTEGWDHPPTSCVVLLRPSSYKSTMIQMVGRGLRTVDPEEHPGFVKTDCVVLDFGTSSLIHGTLEQDVDLDGKTETGDAPTKTCTACEAEIPLAATECPLCGEAFPREDLDAGEGGAAAPLSGFMMTEIDLLKRSSFAWVDLYGTDDALMATGFAAWGGIFWLDGVWYAIGGAKGERPHLLGVGERTVCLAQADDWLNTHETDESAFKTRSWLRQPPTEKQLQYLPPECRHDFGLTRYRASALMTFGFNKRAIRQLIDTAARPERRAA* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0015 cloud direct high 1688 0.999 GCA_002196965.1_01863 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 21824 22042 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 15722 15940 GCA_002196965_1_87_22 GCA_002196965_1_87_22 + 64552 . . hypothetical protein MTHVHIHPHHGRGPAAALASAWDALCCLPATHPWLWLVRSAPVEAAPALGLVLLDALPVLLDALGAGAFRHG* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0016 cloud direct high 218 0.995 GCA_002196965.1_01864 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 22035 22241 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 15933 16139 GCA_002196965_1_87_23 GCA_002196965_1_87_23 + 64552 . pfam20121 Family of unknown function (DUF6511). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 87 and 141 amino acids in length. MVDLTEEERAAITATMKRVALLMDEIGWATPLADLTEAQVRALIEEAVEGFREAMSDIARAQTPEVPL* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0017 cloud direct high 206 0.995 GCA_002196965.1_01865 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 22238 22639 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 16136 16537 GCA_002196965_1_87_24 GCA_002196965_1_87_24 + 64552 . PFAM:PF02945.14 endonuclease MTKLCTKCGVKKDVCEFGRRRLSPDGRQTWCRDCRREYQRAYAQNFRDPEKHREAQRRYRLRHAEKNKAHSIVRSAVKACRIIVPVWCQRCGCVTDLEAHHHDYNAPLSVEWLCSTCHGLAHRSYEGGQHAGL* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0018 cloud direct high 401 0.998 GCA_002196965.1_01866 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 22626 23393 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 16524 17291 GCA_002196965_1_87_25 GCA_002196965_1_87_25 + 64552 . PDB:3SZ4_A Exonuclease MLDYNRRPSFADRVNAAVDRTLTADQATRPPRDYLGGSRLGHACERALQFEFTATPKDEGQDFSGQSLRIFAIGHALEDLAVAWLRGAGFDLYTRKGNRPDGGQFGFSVAGGRIRGHVDGIVATGPDGFGLAVPALWECKTMNAKNWRACVKDGVSKSKPVYAAQIAVYQAYMETSVPGISAAPAVFTAINKDTAEMHHELVPFDADLAQRMSDRGVRILQATDAGELLPRVATTPDFFECRFCPWSERCWGLPA* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0019 cloud direct high 767 0.999 GCA_002196965.1_01867 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 23345 25711 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 17243 19609 GCA_002196965_1_87_26 GCA_002196965_1_87_26 + 64552 . PDB:1NLF_A Regulatory-protein-rep MPLLPVVRALLGAAGMSDDGILHFNPWMDFNDGPPSENPFGCDPDPEQIAVFLDTVFSWCEGLIPLRGFVDKGQGRDGKPHNIWIPADDTAPEKLATFAAWANREGAAVYVIPGTVAEQGQARAADVLQMQAIVVDLDAGDIPAKLDHVTRHLGTPTLVIESGGRTPEGAAKLHVWWKLTEPAEVDDLVTLCRLRGEIAVKVGGDTHFRSAHQPIRVPGTVYHKHGHQRLVQIREHRTVEVDLADFAERVAEMPPLPGVGFASDVAAPTSKPGIDAVLTTPVREGAVDDWSRFQGASAAIGHYVRLVHEGRLDPFAGWEAICGYNAAMLRPSWPLDRLMAESERLWALHVKRNGPPLLRAAHAHAPATPLPTFSLGALLDDTSPMPEDVIGPRVLTPGGLLVLGGAPKVGKSDFLISWLVHMAAGVPFLGFTPPRPLRVFYLQAEIQYHYLRERMQQIALSAAVIAAARDTFIATPKLKLLLDAEGVARVAEAIRAAFADAPPDIIVIDPIRNLFDGGPEGGGENDNTAMMFFLKDRVELLREAVNPDAGVILAHHTRKASKHQVKDDPFLALSGASALRGFYTSGLLMHRPDEDSSVRRLEIELRNGPALPGKLIDKVKGEWVELNPLNERLVRKEVGAKLDAERLRKHDVILGMLLDEAASERLYTAMQFAETFENRGGLGSKHTIRERLSVLATKGFVKFLRDPSGFGFPITRSRFGYLCVEGMQFGAPVEHVDPDTGEVTTTARPVLPSHFKCPQSGLCLQVENPAVWVYPEGLEDDLTHMSEA* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0020 cloud direct high 2366 1.0 GCA_002196965.1_01868 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 26053 26634 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 19951 20532 GCA_002196965_1_87_27 GCA_002196965_1_87_27 + 64552 . PFAM:PF02075.16 RuvC-like-Holliday-junction-resolvase MAQPTLIPNCDGARFESLPLDAPRNRVEQTYAAPQGPRFCTTLALDLGTSTGWAIRGHDGLITSGTVSLRPGRFDGGGMRYLRFTNWLTEIDRLSGPVAAIWFEEVRRHAGTDASHIYGGLMATLTAWAELRGVPYEGVPVGTIKRHASGKGNADKAAMVAAVRARGFSPADDNEADAIAILLWAIETKGGVA* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0021 cloud direct high 581 0.998 GCA_002196965.1_01869 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 26631 26831 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 20529 20729 GCA_002196965_1_87_28 GCA_002196965_1_87_28 + 64552 . . hypothetical protein MRWHPHGYGGRRRDPEQVKREGWQEQGVLAVSADDDRLTWPERELVRQLGEKLYGPRPSDREARHG* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0022 cloud direct high 200 0.995 GCA_002196965.1_01870 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 26824 27204 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 20722 21102 GCA_002196965_1_87_29 GCA_002196965_1_87_29 + 64552 . PF07638.11 ECF sigma factor MADREWTAECVADHFEEAFRTLRKLPPVKAQGYFNTWPNIVRTSREIAAMEPQPMRVWPSAAAITRLEQTFDWVLWIEEAERKLVLSRAARVPWKQISGELGCDRTTAWRRWQLALTKIAARLNAQ* hhsuite_tools nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0023 cloud direct high 380 0.997 GCA_002196965.1_01871 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 27621 28997 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 21519 22895 GCA_002196965_1_87_30 GCA_002196965_1_87_30 + 64552 . PDB:5HFJ_C Adenine-specific-DNA-methyltransferase MTLSFAPDAIETWPLSRLQPYAKNAKAHGADQVTKIAASMAEFGWTVPCLVADDGELIAGHGRVLAATQLGLTEAPVIVLGHLTEAQRRAYRIADNKLTELGTWDEALLSAELNDLLAEDFDLSLVGFSDGELDKLLAFVPEGDSEEGGAGGSVPPVTIPEPPRNPASRTGDLWILGDHRLLCGDSTSAADVRHLMNGERAILFATDPPYLVDYDGSNHPTRNKDWSASYGTTWDDSSQGAELYDGFISAAVAEAIAEDAAWYCWHASRRQAMLEACWEKAGAFVHQQIIWVKDRGVLTRSHYLWKHEPCFMGWRRPNRPPKVAEETLPSTWEMASFAKDERPDHPTPKPLDAFGIPMRQHVARGGICYEPFSGSGSQIMAGEANGRRVFAMEISPAYIDVAVERWQAETVKDAILDGDGRTFAQVKAERLGDDAEAPADRPDTDAAPEPARKRQTAA* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0024 cloud direct high 1376 0.999 GCA_002196965.1_01872 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 29014 29745 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 22912 23643 GCA_002196965_1_87_31 GCA_002196965_1_87_31 - 64552 . . hypothetical protein MGHIAAVVARFIPCWPASCEGVGFVCRFSLALALGVGQSRSSSVRFPPLDRVPEQARGVGQVVPLADREDEEPLALVGRADFRRREEACRKAVAHADQPAGDFGEAEAEMMGDILEKDEGRLDLSNDPSDMRPEVARVVRTPALARDRERLARIARSNDVHRAAPRAAVKGGNVVPDRRAIQGRVFHPRHESGCGVGFPFDMAHSTISGDGDGEPEVEPARAGAEGEAEEACISGPGSVSGGR* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0025 cloud ambiguous low 34 0.046 GCA_002196965.1_01873 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 29810 30193 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 23708 24091 GCA_002196965_1_87_32 GCA_002196965_1_87_32 + 64552 . PFAM:PF00145.16 DNA-methyltransferase MARDWPTPMANDGCKPSAGNRKTADLTHAVGLWMTPTARDHKDGATTLANTPVNGLLGRQVLVTPMAGSDTSEPRRTLNPLFVEALMGWPTGWTGFASVATAWPPWLRRMRCELSRLNCWPMDEAAA* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0026 cloud direct high 384 1.0 GCA_002196965.1_01873 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 30190 30414 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 24088 24312 GCA_002196965_1_87_33 GCA_002196965_1_87_33 + 64552 . . hypothetical protein MKQTRLMSLVESVANVIVGYGVAVVTQILIFPIFGLHTTLAQNLKMGAIFTVVSIARSFALRRVFEAIRMRSAK* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0027 cloud direct high 224 0.996 GCA_002196965.1_01874 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 30468 31040 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 24366 24938 GCA_002196965_1_87_34 GCA_002196965_1_87_34 - 64552 . pfam11994 Protein of unknown function (DUF3489). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 84 to 211 amino acids in length. This protein has a single completely conserved residue W that may be functionally important. MTKLSDTQAIILSAAAQREDRIALPLPESLRGGAAAKVVGAMLAKNFLQEVDADTRKGELMWRETGDGHGVTLVATDAGLAAIGIETEDANPAPAGATDAPTEEAAPDTPTVAETAPKTRTPREGTKQATLIAMLRAPDGATIEEIMAATGWQSHTVRGAMAGALKKKLGLEVTSEKVEDRGRVYKLPAA* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0028 cloud direct high 572 0.998 GCA_002196965.1_01875 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 31136 31408 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 25034 25306 GCA_002196965_1_87_35 GCA_002196965_1_87_35 - 64552 . . hypothetical protein MTTRLNPITTPRHELRAEKARRNKEAALAAFIGKKAEIDEMLARLQTLSDDHFNAHPDEINWGHVGTLEHYASLLKRITDSAFGEGEHAR* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0029 cloud direct high 272 0.996 GCA_002196965.1_01876 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 31520 32116 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 25418 26014 GCA_002196965_1_87_36 GCA_002196965_1_87_36 + 64552 . PFAM:PF13591.5 terminase-small-subunit MQGMSERQYAAHVGLSRGAIQKAKAAERLVLYPDGSINAAASDARRAETTDPSKTRKPPTPKLKPVPEAAVAAVGDTLREQGLAVPAVGGGTTFLQAKTANEVLKAQERRIRLQKLKGELIERARALALVFRLAREERDAWVNWPARAAALMAAELSASCADVTGQQITVEPAAMQKVLEKHVRAHLDELAEVRPDFR* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0030 cloud direct high 596 0.998 GCA_002196965.1_01877 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 32064 34067 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 25962 27965 GCA_002196965_1_87_37 GCA_002196965_1_87_37 + 64552 . CDD:pfam05876 Large-Terminase MYAPTSTNSPRSGPTSGDDDGLIDFDGAGEILRAWGNGLRPDPDLTVSEWADRHRMLSGRASAEPGRYRTVRTPYMREIMDRLSPGDPTQRIVFMKAAQVGATEAGNNWIGFAIHQAPGPMLAVQPTVELAKRNSRQRIDPLIDESPELRERVKPARSRDAGNTMLSKEFAGGILIMTGANSAVGLRSTPARYIFLDEVDAYPASADEEGDPVTLAEARSLTFAHRRKVLLVSTPTIRGLSRIEREYEASDQRRFFVPCPQCGHAQWLKFDRLRWQKGRPETAEYHCEGCDAAIAEHHKTAMLEGGEWRATATAADPTTVGYHLSALYSPIGWLSWERIVRSWEAAQGSDEAIKAFRNTILGETWVETGEAPDWQRLYDRRERWKSGTVPAGGLFLTAGADVQKDRIEVDVWAWGRGLESWLVDHVVIEGGPDRHDAWSELTALLDRSWPHERGAHLRIARLAIDTGYEAPAVYSWSRAQGFAQVSPVKGVEGFNRASPVSGPTFVDATEGGKRLRRGARLWTVAVSTFKAETYRFLRLARPTEEEMADGAAFPPGSVHLPHWVENEWLKQFVAEQLVTVRTKRGFARLEWQKLRERNEALDCRVYARAAAWIAGADRWPDEKWRDLEDQLGAAPTDTDPAGQINRPGQAPQGKRRSDWLGRREGWF* hallmark_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0031 cloud direct high 2003 1.0 GCA_002196965.1_01878 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 34070 34279 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 27968 28177 GCA_002196965_1_87_38 GCA_002196965_1_87_38 + 64552 . PFAM:PF02831.14 head-tail-adaptor-Ad1 MIDWTETELSALRRAYASGTTRVSYDGKSVDYGSAEDLLARIRTIERAIAGFSRPLPVAGLAGFSRGDR* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0032 cloud direct high 210 1.0 GCA_002196965.1_01879 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 34279 35835 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 28177 29733 GCA_002196965_1_87_39 GCA_002196965_1_87_39 + 64552 . PFAM:PF05136.13 Portal-Protein MSATWFDHAIATVAPRMAARRVMARQAFETLTRGYDGAARGRRTDGWRAPGSSADTEIGVAGALLRDRMRDLVRNNPHAAKAVAVLVNNIIGAGIMPRAASGDDKLDRKVDALFERWTADCDADGQLDFYGLQTLICREMVEAGEVLVRRRLRRASDGLPVPLQLQVLEADFLDATKSGAIGAGRLVQGIEFDPVGKRRAYWLHAEHPGDAYGALQNGLQSRPVPATEIAHVYEKQRTQARGVPWGAPVIRSLRDLDDYEVAELVRKKTEACVTAIVFGDDEAQQGIAPSVVDADGNRVEQFEPGLIAYARGGKDIRFNQPSATGGYGEYKRASLHTISAGFRVPYELLTGDLSQVNYSSIRAGLVEFRRQIDAVQWQLFIPMFCAPVWRWFTEAAWAAGQIPSPTVPVEWSPPKFEAVDPQKDAMANLLSIRSGTMTLAEVIAKQGRNPDAVLEEIAATNAKLDALGLVLDSDPRRVTKTGSAQTGDPATDPATDAPDTDDPAAEAETDPAQADQQD* hallmark_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0033 cloud direct high 1556 0.999 GCA_002196965.1_01880 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 35841 37895 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 29739 31793 GCA_002196965_1_87_40 GCA_002196965_1_87_40 + 64552 . PDB:6WKK_D Major-Capsid-Protein MDTMIELPAMRRSAELAPNTADAETRTVEVVWSAGARVRRATFFGEPYDEELSLDPAHVRLDRLNAGAPFLKVHELDTLDAVIGSVVPGSARIENGRGIALVRISERADVEPVWRDIQAGHIRAVSIGYQVHRFEVSKPEAARELWRAVDWTPFEVSAVAVGADPAAGFRAQHPLHDCVLQRRDAPTEQGASPMTDKTQTPSSDAATPATPQPTEPVETEDNPMTEPNAAAPDSKVAASETRAQPKTQATPAPDTEAVATRAREAERDRVSTIYDLAGRLNLERGFAEDLVKRGVSVDESRRLILDQVAAKSDETRTFPHVSVPLGGRDERITRRDAVANALLHRYSPTLFQLEDAARQYRGMTLLELARESLGNAGVNTRGLSRDEVATRALHSTSDFPEILSAVTNKTLRQAYEAYPRTFMLFCRQVLATDFKAMHRVQLGEAPQLLEVGESGEFKRGALGESKESYKVKTYGRVVAITRQTLINDDLDAFTRIPAMYGNSIAQLESDVVWGIITANPAMADGNALFHTTHKNLAGTGAALDVGSVGAARAAMAKQTGLDKKTVLNVRPAFLIVPASLELKAEQLVAQNLVPAATSSVVPQSIRTLAPISEPRLDAASETAWYLAASPNQIDTIEYAYLEGQQGAYIETRNGFDVDGVEIKCRLDFGAKAIDWRGLYKNPGA* hallmark_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0034 cloud direct high 2054 1.0 GCA_002196965.1_01881 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 37970 38305 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 31868 32203 GCA_002196965_1_87_41 GCA_002196965_1_87_41 + 64552 . COG5471 Predicted phage recombinase, RecA/RadA family [Mobilome: prophages, transposons]. MKNFVQPGNTITLTAPYAVASGDGLLVGSIFGVASGTAALGESVETALTGVFDITKIGSQAWTAGARIYWDDTNKRTTNVATSNTLIGVATEAVAGGAGDTVGRVRLNGAF* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0035 cloud direct high 335 0.997 GCA_002196965.1_01882 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 38305 38616 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 32203 32514 GCA_002196965_1_87_42 GCA_002196965_1_87_42 + 64552 . PF13856.6 ATP-binding sugar transporter from pro-phage MSAFADAVSALFADPNIGRDAVYIVDGGSPVLVRVVARRADAISDFGDARLWSETTLIDLRVAEVANPRPGDRIEIDDDAFLIQGEPVRDRERLVWTVDLRPA* hhsuite_tools hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0036 cloud direct high 311 0.997 GCA_002196965.1_01883 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 38622 39248 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 32520 33146 GCA_002196965_1_87_43 GCA_002196965_1_87_43 + 64552 . pfam20039 Family of unknown function (DUF6441). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 210 amino acids in length. MKLKLDIDPDIVAMMAAEVAAGERAVTAAMREAGSGLKSAWRLQITGAGLGPRLANSIRSQNFPRSGESLDAAALVWSKAPVIVGAHDTGPLIRSKNGFWLAIPLPAAGKSLRGGRITPGEWERRRGLRLRFVYRRTGPSLLVAEGRLNTKGQAVVSRSKTGRGKVTAPIFLLVPQVKLPKRLDLARDADRALDSVPGLIVANWVERR* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0037 cloud direct high 626 0.998 GCA_002196965.1_01884 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 39280 39984 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 33178 33882 GCA_002196965_1_87_44 GCA_002196965_1_87_44 - 64552 . . hypothetical protein MISDRFEDFAQSLRVFIEQKSKFQQLFLIDSGEAIGNVELACKSMLDTFASLYDAARDSPEVNFDFYASPLCCCVLAYRNAKHHNHAHGIRSVHRFAQRTERQDLLLVDFPAGEGEEGGGFIDHYASWGDFCTLLDMPRDQSRLRANARNLIRDRLSAEAFEHFAAHDRVPTNRVFINMVPVIIGAGSEFIHDLKPHIYPHSTEAEHFLWHFEHVEQAKFDQPEYLELTSAVFG* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0038 cloud direct high 704 0.999 GCA_002196965.1_01885 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 40063 40479 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 33961 34377 GCA_002196965_1_87_45 GCA_002196965_1_87_45 + 64552 . PFAM:PF06141.10 tail-terminator MTPRETILAALHARLSALAATALRGDVLPERVPAEGLLILRDGEPGEPEVTLSPLQYHYQHRAEIEAVVQGSDRDAAFDALTASIGTALAADRTLGGLCDWVEAEAPRPVDLPVEGAASMKAAVIPVLLHYSTADQLA* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0039 cloud direct high 416 0.998 GCA_002196965.1_01886 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 40504 41880 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 34402 35778 GCA_002196965_1_87_46 GCA_002196965_1_87_46 + 64552 . PDB:5NGJ_B Tail-tube-protein MARAQGARALMALAFETTYGTPPASGFTRVPFASTSLGAEQPLLNSELLGYGRDPLAPIKDAVTADGDVVVPLDAEALGFWLKAAFGAPTTTGVEAPYSHEFQSGSWTLPSMSIETGMPEVPRYAMYSGCVLDQITWQMQRSGLLTATARLVAQGETVGTTTSAGTPAALELKRFGHFNGAITRNGTALGNVVSAEITYANNLDRIETIRSDGRIDGADPSIAALTGRIEVRFADQTLVTQAINGEACEMEFAYVLPSGESFTFTVHAVYLPRPRIEISGPQGVQATFDWQAARDSVFGRMCTATLVNDVETLMLTLDLTNAPRWHDLAPGVRVQLRPLTTALMVATRSDPAVEAVPEEASDEERAVAFAKALARRAVLAWDGIGDAEGKPIDPGPEAIDALLDIWPIFEAFQLTYVSKGLLLEQEKNASALSPNGPSAGASATAKPAKGRARTARRG* hallmark_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0040 cloud direct high 1376 0.999 GCA_002196965.1_01887 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 41949 42122 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 35847 36020 GCA_002196965_1_87_47 GCA_002196965_1_87_47 + 64552 . . hypothetical protein MLPGAVIGWDMSAALALGDALGVPPLAMAELLPVIEAVMVRKLNEELSANGGAGVRP* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0041 cloud direct high 173 0.994 GCA_002196965.1_01888 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 42112 42492 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 36010 36390 GCA_002196965_1_87_48 GCA_002196965_1_87_48 - 64552 . cd18686 uncharacterized subfamily of the VapC (virulence-associated protein C)-like family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons. MILVDTSAWIEWLIDSATGAKVAEHLPEQAEWILPTMVQLELAKWLTREVGEDKADQVIAFTQVCHVVPLDTEIALAAAEACREHKLATADAIIFATARAQGATLLTCDAHFEGLPGVTLIEKIKA* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0042 cloud direct high 380 0.997 GCA_002196965.1_01889 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 42492 42704 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 36390 36602 GCA_002196965_1_87_49 GCA_002196965_1_87_49 - 64552 . COG2002 Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module [Transcription, Defense mechanisms]. MAETAILSSKFQISIPKAIRAAQHWEAGLTFAFIPKGTGVLLVPVPKREALKGLARGASATDYRDRTDRF* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0043 cloud direct high 212 0.995 GCA_002196965.1_01890 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 42775 45192 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 36673 39090 GCA_002196965_1_87_50 GCA_002196965_1_87_50 + 64552 . Uniprot:Q52PL2_9CAUD tail-tape-measure-protein- MAEKRVSVRLAAVGGRQVRAELEGVGEAGARGFGRLSREMEAANARLAAFSRRVRVAASAAVAAATAAGVAMIRSGLQTVDAQAKLAQSLGTTVASIQTLERAGELAGVSMSGIEQATKDLTRRLSQAAAGTGPAADALDRIGLSATELIALPLDQRVGAINAAIESFVPAAERAAVAGQLFGEEGSIAMSRIDTATLRQATEDVRAFGVVVSEQDADQIERTNDAISRLGLIWRGLSNQLAVAAAPALEAVADAMAAVASRTGPLGIAIRGLFDNIGRLTAYAATFAAFLAGRWVAGMAAAALSVRGLATALVVLRGALIRTGIGALIVGAGELVYQFTRLVSGAGGFGEAMSLLNDLAVEVWERIRMGAAAAGAAATAMFFDLKADAASGMQSAIESVVAFGNTAANTFEGAYEAIKAIWGLLPAAIGDLAFQAANSLVDGVEAMLNGVVSRINGFIGGINQGLEALGSERRISLVPDLDLGEIENRFAGAATAATTAAQAAFDRAFEDNPLATPDLGLTDAAARALESANLYRGAARDLAEGARAPLESWQALRDAVRGTDEASADVLTEATGAAERLETALGDAGRAATDAGAAAGAAAAAAEPATEAAVTGWQAVTAALSDYASKAREIGGDIGQSLVGAFQSAENAVGQFVRTGKLNFRDLVTSLLADLAQLAARRFILGPIANALSGVFSGAGGIFANVLHAGGMVGSAGPSRMVPAMAFAAAPRMHGGGMAGLRHDEVPAILQRGERVLSRREAQSYGAGGGVDVTIMARDAESFRQSRTQVAADIARAVSLGRRGM* hallmark_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0044 cloud direct high 2417 1.0 GCA_002196965.1_01891 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 45192 45818 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 39090 39716 GCA_002196965_1_87_51 GCA_002196965_1_87_51 + 64552 . PFAM:PF09343.9 glycoside-hydrolase MAFHEVRFPDNISRGARGGPERRTQIVELASGDEERNASWANSRRRYDVAYGIRRADDLAAVVAFFEARNGRLHGFRFKDWGDHKSCLPSGTPSPTDQSIGTGDGTTTVFQLVKRYASGAQSWTRAIAKPVAGTVRIALDGSEQPSGWSVDNATGVVTFSAAPGAGAAITAGFEFDVPVRFDTDVLDVTLDLERLGSITSIPLLEIRR* phrogs_hmm nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0045 cloud direct high 626 0.998 GCA_002196965.1_01892 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 45815 46165 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 39713 40063 GCA_002196965_1_87_52 GCA_002196965_1_87_52 + 64552 . . hypothetical protein MNDTGSFVAAVLRELAASTAVILAAWGALGGATNALTTKMRLRDALRHILLGGLIAAGMGSLSMAVITAWLSLPPEAIPAGGAAGSAAYLVGVFGPAFIEMLLARLRRANEGAGDE* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0046 cloud direct high 350 0.997 GCA_002196965.1_01893 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 46158 46289 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 40056 40187 GCA_002196965_1_87_53 GCA_002196965_1_87_53 + 64552 . . hypothetical protein MNELLRLARSLRCDPADARQAFAHRVRIGLAVAALILVLSLLR* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0047 cloud direct high 131 0.992 GCA_002196965.1_01894 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 46294 46953 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 40192 40851 GCA_002196965_1_87_54 GCA_002196965_1_87_54 + 64552 . PDB:3HDF_A Lysozyme MHMTDRGLLALVRHEGIVPGPYLDVKQVWTFGIGHTAAAGPPDPATMARGMPGDLDAGIREAFRVFRADLARYEAAVLRAVKVPLAPHEFDALVSFHYNTGGIAKAALTRHLNAGNRVAAASAFLSWRRPASIIPRREAERDLFRHGRYPGGTIPVWSVDRTGRVDFSRPVRRLTEDEALALLRRSPSPTTPVLKPVPDAPTGWLGRLAAFFSTLLRRA* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0048 cloud direct high 659 0.998 GCA_002196965.1_01895 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 46958 47188 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 40856 41086 GCA_002196965_1_87_55 GCA_002196965_1_87_55 + 64552 . . hypothetical protein MRYVRPNSLTWWAGCLAMLTGIASLALPATGPLGELSRLVALLAGSGDASPAGLMFLGLGLIGLRDRIERGFRGDA* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0049 cloud direct high 230 0.996 GCA_002196965.1_01896 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 47275 47505 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 41173 41403 GCA_002196965_1_87_56 GCA_002196965_1_87_56 + 64552 . PFAM:PF10883.7 Rz-like-spanin MADLLIWLVAAFGAVGGVVLGRVWGRVEGEHAGEREAERDAMEETIEKVERGRDAVSDGRGAGDPADRLRRNDGRW* phrogs_hmm hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0050 cloud direct high 230 0.996 GCA_002196965.1_01897 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 47447 47635 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 41345 41533 GCA_002196965_1_87_57 GCA_002196965_1_87_57 + 64552 . . hypothetical protein MAAALAILLTGCAATMGAGDAGCASYAEARLARPPAETVAEVPPDWADWIADLDDRMTGTCR* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0051 cloud direct high 188 0.995 GCA_002196965.1_01898 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 47632 48516 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 41530 42414 GCA_002196965_1_87_58 GCA_002196965_1_87_58 + 64552 . PFAM:PF05100.11 Minor-tail-protein MKSLSPALQSHLDEGTTTLAWCWWIARADGVTFGFTDHDRTLSFNGTDFEPESGLTASEVRSGSDLSVDAQDAEGVLTSDRITETDILDGRWDNAAVEVWRVNWADTAQRVLMRRGAVGQIRRGRLAFVAEVRSLAHVLGQTVGRTFQATCDAALGDARCRVDLEDPAYKGTGAVIDLLRDRTFTASGLGGFEAGWFTFGTVDWTSGANAGRRTEVLGHNVTDGIAVLTLLEAPVRAIAEGDSFTIRAGCDKRMETCGAKFANTVNFRGFPHIPGQDAVLRYATKDGGHEGSVL* hallmark_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0052 cloud direct high 884 0.999 GCA_002196965.1_01899 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 48513 48947 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 42411 42845 GCA_002196965_1_87_59 GCA_002196965_1_87_59 + 64552 . TIGR02219 putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by pfam00877 and by Anantharaman and Aravind (). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions] MTSADPMRVIAIARSWLGTPYHDQASLRGVGCDCLGLARGVWREVVGPEPFPIPPYSRDWGETGPREVLAEGARRMMTEVEPAAAGPGALVLFRMKPRAIAKHVGILTGPDTFLHAYERLGVIEEPLTQSWRRRIAFAFLFPQR* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0053 cloud direct high 434 0.998 GCA_002196965.1_01900 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 48958 52923 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 42856 46821 GCA_002196965_1_87_60 GCA_002196965_1_87_60 + 64552 . PFAM:PF13550.5 tail-protein MATLVLGAAGAAIGGSIGGAILGVSAATIGGFIGSTIGSVVDSWIISSLAPTQRIEGARLDTLRITSATEGAVIPRLYGRMRLGGNIIWATDFREETKTTTQGGGKGGGGGKVKTTEYLYYASFAVALCEGPITGIGRIWADGKPMDLSGVTWRWYPGDEAQAADPFIAAKMGAANTPAYRGTAYVVFEELALSTFGNRLPQLSFEVFRPLADPDTAEGLTRAVTMIPASGEFTYATQAIRKTDGGATVPENLNALADSTDMVEALDRLQAMAPAVESVSLVVAWFGDDLRAGSCKVRPGVEVSAKSTTPASWSVNGVSRANAFLVSRDDQDRPVYGGTPSDFAVVQAIREMKARGLRVTFYPFILMDVPPGNGLPNPYSDNAAETGQPAFPWRGRITCSPAAGFAGSVDKTATAATQVAALFGTATPANFSLSGQSVSWTGPSGDWGLRRMVLHYAHLCAAAGGVDAFLIGTEMPGLTTIRSGASTYPAVQAYRNLLADVRSILGSGTKIGYAADWSEYFGHQPGDGSGDVFFHLDPLWADPDIDFVGIDNYMPLSDWRDGFEHADAAEGWPAIYDRAYLQGNIAGGEGYDWFYASAADRSAQVRTPITDGAAAKPWVFRYKDLRAWWSNAHYNRPGGVESGTPTAWVPQSKPIWFTELGCPAIDRGTNQPNVFFDPKSSESFTPHFSRGWRDDAIQRAYLEATYLWWGEAANNPVSSVYGGRMVHVPECAAWTWDARPYPFFPALTDVWTDVANWRLGHWLTGRLGAVSLAALVRHLCLRAGLPESRIDVTGLWGAVEGYAITALESPRASITTLSRHFGFDAVETEGVIRFIMRGRASVTTLAPDDLVAPREGDVLELTRGQETELPQALKWQVARADEDYEAALVEARRITVDTTRIASESFPIAVPPEEAERRCRRTLMETWVGRETAAFRLPPSRLALDPADAIRLAHDGRLVDLRLVSIADAEARGIEAVRQDRATYDLPPGDPRAASLTRAVVFGAPDAVLMDLPQLTEDQPAHRPLVAAHAVPWPGEMAVFRSPSTDGFELLTTFGSRARIGALVSDLYAGPTSRFDFGNVLLVDLLTGTLESITDLTLFAGANALAIESAPGVWEIVQAGTAELLAPGRYQLTRLLRGQRGTEGAMGNPAPAGARVVVLDSALASLPIAEADLGIPWNWRIGPASRPVSDETYVAQAFPPEGVGLRPFSVAHVEQPWRRPRTPGDLTIRWTRRSRALSADSWGGLEVPLGEELEAYEVEILNGTIVKRVLSTTTTSALYTAAQQTADWGALLATGDTLDIRIYQLSALVGRGAPKTVALTF* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0054 cloud direct high 3965 1.0 GCA_002196965.1_01901 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 52934 54010 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 46832 47908 GCA_002196965_1_87_61 GCA_002196965_1_87_61 + 64552 . pfam10983 Protein of unknown function (DUF2793). This is a bacterial family of proteins with unknown function. MSDATTHLLLPYILAAQAQKHVTHNEALRILDGLVQLSVLDRDLTAPPGSLADGDRYIVGSGATGDWAGWDLNVALWTDGAWLRLPPRTGWRAWVEDEGLLLVYDGATWIGTTPAVLQNIALLGVGTTADASNPFSAKLNAALWTAKTVAEGGTGDLFYTMNKEAAGDDLGLTLQTGFVTKALVGLFGSDRFRLAVSADGSTFFDGLSVNNATGIVDQPRLPRFKAYTNYDNYVGVGTWTKIGLNNTDYNDQGAFDAANNNFVAPSDGTYLFGATLLYKVNASTTARMSGRLVLNGTTEIRGSLGEISATHVSLATAIWLQTMVPLTAGDTVELQGYFRVADGYFAADHTSFWGCKVG* mmseqs_cdd common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0055 cloud direct high 1076 0.999 GCA_002196965.1_01902 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 54030 54317 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 47928 48215 GCA_002196965_1_87_62 GCA_002196965_1_87_62 + 64552 . pfam19622 Family of unknown function (DUF6127). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 100 amino acids in length. MNPPRSEGFVRMPDAEFEAILTRAAEEGAKRALADVGLDGDEAALDIRDLRSLVDCIRLVRRTAMQTAVRMITTAVMLALLAGIAIKLKIFGGGP* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0056 cloud direct high 287 0.997 GCA_002196965.1_01903 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 54478 54984 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 48376 48882 GCA_002196965_1_87_63 GCA_002196965_1_87_63 + 64552 . PFAM:PF08291.10 Peptidase-M15 MTTTFHRHWRDVPESTWRWPNFSPAEIACRGTGKLLINEPALDKLQALRDRLGKPLIVRSAYRSPEHNRAVGGATRSKHLDGAAFDIAMANHDPVAFEAAAREVGFLGFGFYPRSGFIHVDLGPARQWGERFPVRAVPFVAETPPAREVLAVNGGVKPGHAAAQKSAS* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0057 cloud direct high 506 0.998 GCA_002196965.1_01904 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 55064 55819 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 48962 49717 GCA_002196965_1_87_64 GCA_002196965_1_87_64 - 64552 . PDB:4M4W_K Replicative-helicase MSDAPEILLAHHLKTLKLPTFLREHQKLARQCAAEGVDHVRYLARLVELELIDRERRMVERRIKAARFPAVKSLDSFDFTAIPKLNKMQVLELARCEWIERRQNIIALGPSGTGKTHISLGLGLAACQKGLSVGFTTAAALVSEMMEARDERRLLRLQKQMAGYKLLIIDELGFVPLSKTGAELLFELISQRYERGSTLITSNLPFDEWTETFGSERLTGALLDRLTHHVSILEMNGQSYRLAQSRARKAG* rep_hall_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0058 cloud direct high 755 0.999 GCA_002196965.1_01905 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 55816 57315 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 49714 51213 GCA_002196965_1_87_65 GCA_002196965_1_87_65 - 64552 . PDB:1BCO_A Mu-Transposase MELYLKVRQACAAGMSQRQAATEFNISPRDTVAKMMTFSVPPGYRRTAEVKRPKLDPFIPIIEDWLEADRTMPRKQRHTAKRVFDRLREECGFTGGYTIIKDYIRERKRRGQEVFVPLAHPPGHAQADFGEAMVRIGGVEQKAHFFVLDLPHSDACYVRAYPAAVAEAWVDGHVHAFAFFGAVPQSIVYDNDRCLVAKILPDDTRKRAALFSGFLSHYLIRDRYGRPGKGNDKGNVEGLVGYCRRNFLVPMPEFASWEEFNLWLEERCKRRQHDVLRGESETIGERLQRDLAAMRPLPAAPFDACDQATGRVSSQSLVRYKTNDYSVPVAYGHQDVWIRGYIHEVVIGCRGEVIARHPRCWDRDEIVFDPLHYLPLIEQKINALDQAAPLQDWDLPEEFATLRRLMEARMNRHGRREYVQVLRLLETFDLADLHAAVRQALQMGAIGFDAVKHLLLCRVERRPPRLDLDCYPYLPRARVEKTEARSYMRLLSVNAEGVA* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0059 cloud direct high 1499 0.999 GCA_002196965.1_01906 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 57361 58059 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 51259 51957 GCA_002196965_1_87_66 GCA_002196965_1_87_66 + 64552 . . hypothetical protein MDDFYAARSSTMPPLTWTNFAPPFSRDLAYLAENGLLKVSVRLYGALLEQGSYEVEDDRQWFTIPEDRSPFHGLQDLRTHDVYRLFHEGSIRVSHFDAPKDRYCVVLKPEDGILVHKEELVVRREERHRAEARHGLGGRRRTSETVFQQRHEFSEIILGERTFLLGPIQARVVRILHDAASSELPWRHGKMVLAEAGSSCTRMSDLFKTQPEWRKLIQSDRRGRYRLNIRFS* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0060 cloud direct high 698 0.999 GCA_002196965.1_01907 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 58159 58263 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 52057 52161 GCA_002196965_1_87_67 GCA_002196965_1_87_67 + 64552 . . hypothetical protein MQFLGQMRTTDSININWQALIGLAVSDNAAVAIR* . hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0061 . unmatched_CDS none 0 0 . GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 58347 58811 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 52245 52709 GCA_002196965_1_87_68 GCA_002196965_1_87_68 - 64552 . COG1846 DNA-binding transcriptional regulator, MarR family [Transcription]. MQRHDMTRAADSRLEKEQQLRRDLRSVLRKVLRLDATVARRLGIHGTDLASLELLETADEPVTPTMLSDYLGISTGSATAAIDRLERAGFVRRVPNSHDRRGIIIEPVEGQQERLLSAYHQLRSRYAELIEGISDDELDVINRFLKGIERIELS* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0062 cloud direct high 464 0.998 GCA_002196965.1_01908 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 58890 60128 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 52788 54026 GCA_002196965_1_87_69 GCA_002196965_1_87_69 + 64552 . COG1566 Multidrug resistance efflux pump [Defense mechanisms]. MTTERTPQPGDDAGDVEHAPATPLVTRQDASEPEPESAPVTLEDEAAPNAEPLPGNRGNPAKKIAALLVVVLAVFVSWYAVSDRLAPYSSRGTVSAYVAQIAPRVAGQVTEVFVEDNTIVDQDEPLFQLDRRPFELAVRQAEVGLAQAVQATDASAAAIASSQARVSQARASLENARTAANRTASLFERGVVAQAQVDNARAELRVAEAQLEAAEADLQSALLQLGKDGGASNPQIMAAQLQLEQAQLNLLYSTVTAPTRGVVTNLQLAIGQFAAAGSPVMTFFDSRGAWITADLRENQIGNIEPGDEVEILFDAMPGQTFRGRVHSIAWGIDPGRTSAGGLMQNRPENQWFEPARRMPVHIELEGGMQAWPLTVKAGAKVSVVVYAGGTGTPISGVASTLLKIQSWLSYLY* mmseqs_cdd nonviral_gene C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0063 cloud direct high 1238 0.999 GCA_002196965.1_01909 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 60138 61175 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 54036 55073 GCA_002196965_1_87_70 GCA_002196965_1_87_70 + 64552 . 7VOJ_B ALMT1, Aluminum Resistance, malate transport MYVAPRPHVDDDPLFAVRLSSAAVVGFGLAILLQSPMPMLPPALIVGLMAGMRKAFDPKKAVGGPVAMIIMVILISGLVELARPMPLVLITLTGALCVLSYYIILSTGNPIGMLVAIVAVLMSVMRMSSAVMMDYMRDGFIEASLCALVAIPLLYAVFPPRAKEMMVEIYQPASEGHHVLRAFIRGGVLLLLSFWLYAVLDAANLMLAVAAVFVLVFPTREQLYAEAWERTLATMIGAAISFAILYSFDYMAHFPVLLILVFLGGLFLASRMMNGSHPPMVYQFAFSVMISLVAGALSTQNPVSASTLRIVLTLVGAVGAAFLTALLERLLIGDEAHDRLIVPEP* hhsuite_tools hypothetical_protein C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0064 cloud direct high 1037 0.999 GCA_002196965.1_01910 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 61480 62361 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 55378 56259 GCA_002196965_1_87_71 GCA_002196965_1_87_71 - 64552 . PFAM:PF13701.5 Transposase-DDE-domain-protein MGFRKTPHILRKKSHVRRLQCDVRPGGAHSDTHIGASQGRCVIDAIADEGDLAAGSQFASHPDLVLRKHVGVDFLGPQAKLFAYARAPSLEKVIAAGADFIVRSGWRTIRIVIMDGHPVDWNAVYAPMRIGQVREIDVFIEHSGHKQKGRGKPLFQARLIIKRKDAEAAERSLKSAISRHQRRRSSQVMLPTTVAATGFVMLLTSIPAADMTAKAVLDVYRLRWQIELAFKRLKSGLGIHKLPARDVRLARTWLTAHLILALMIEEAVTDVLDSPPCDDETVVNQAHVAVAAA* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0065 cloud direct high 881 0.999 GCA_002196965.1_01911 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote cenote CDS 62780 63808 GCA_002196965.1 NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965.1_NIPZ01000003.1 GCA_002196965.1|NIPZ01000003.1 GCA_002196965_1_87 GCA_002196965_1_87@C1 56678 57706 GCA_002196965_1_87_72 GCA_002196965_1_87_72 + 64552 . PFAM:PF01548.16 Transposase MEEVSIIGVDLAKNVFQLHGAAADGVVVFRKKLSRLQFARFMTDHPACDVAMEACPSAHHWARELSAYGHSVRLIAPHYVKPFIKRQKNDAADAEAIVEAAMRPTMRFVEPKTEAQQARAVAFRAREQIVKQRTEAINALRAHLYEFGHVAPEGVGYIPRLAKVVEDPGSGLPDLARDICRMVLEQIELLTSRLTAVSAKLAAASRAAAMPRQLQTMPGVGPITALAVETFAPPMDQFRRGRDFAAWLGLVPRQHSSGGKQRLGKTSKMGQRDIRRLLVTGAMAVVRWALRRGAPQNPWLERMLERKPPMVAAFALANKMARGIWAMLTRGEDYRDPVMATA* common_virus_hmm common_virus C1 58450 6103 64553 GCA_002196965.1|NIPZ01000003.1@region_6104_64553@tool_cenote_CDS_0066 cloud direct high 1028 0.999 GCA_002196965.1_01912 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 22059 23234 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 1 1176 GCA_002196965_1_94_18 GCA_002196965_1_94_18 + 118596 . COG1559 Cell division protein YceG, involved in septum cleavage [Cell cycle control, cell division, chromosome partitioning]. MIWRHVASNFLTLLIVILIAVAAAVAWAKHQYTAPGPSAVASCVRVPPGASLSAVSESLAAQGVVSNAYIFRAGADYAGKSRDLKYGSYLMPPGASMADVVAAITAGGPSTCGTEIVFRIGVRENSVILRDTDAATGQMAEQAKYIPGEPVPAPIQAAEARPDARLRIAVAEGVTSWQVVEGLKQAGFLAGEVADLPEEGSLAPDTYDVQKGADRATLLAEMARRQANFLAQAWEARETGLPYRTPQEALIMASIIEKETAVPDERRLVASVFVNRLRQGMRLETDPTVIYGITQGKGVLDRGIRGSELRRRTPYNTYQIAGLPPTPIANPGRASIEAALDPDDSDYVFFVADGSGGHAFARTLEEHNQNVRRWREIERQRGQAMSPVQGD* mmseqs_cdd nonviral_gene C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0001 persistent direct high 1175 0.999 GCA_002196965.1_02199 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 23494 23856 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 1436 1798 GCA_002196965_1_94_19 GCA_002196965_1_94_19 + 118596 . . hypothetical protein MTVNFDPGQEPPEGPFASVAEEATEMDVLDIADGLFRSYAADLTRLREKIEAGDAGDLKESGNLVRSLREATKMVLEERGKVDKLRKDAAGQVGAGALDLVAARDEIGRRLACLRRTGGG* . hypothetical_protein C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0002 persistent direct high 362 0.997 GCA_002196965.1_02200 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 23807 25147 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 1749 3089 GCA_002196965_1_94_20 GCA_002196965_1_94_20 + 118596 . CDD:COG5323 Large-Terminase MKSGAAWLACAEPEEVDAFLEGLSSNALAALPWLFEFWALPHQLPPEGDWKTWVIMGGRGAGKTRAGSEWVRSQVEGATPDAPGRAHRVALVSETFDQARDVMVFGESGILACSPPDRRPVWEAGRRRLVWPNGATAQVYSAHEPEALRGPQFDAAWVDELAKWKKAEDSWDMLQFALRLGEHPQQVVTTTPRNVGVLKRILGNASTVTTHAPTDANRAYLAESFLAEVESRYAGTRLGRQELEGLLLEDVEGALWTTAMVERCRVDRAPKLSRVVVAVDPAVTAGAASDECGIVVAGVLAEGPVTEWRAYVLEDATVRGGPTDWARAAIAAMDRHGAERLVAEVNQGGDLVESVIRQIDPLVPFRALRAGRGKGLRAEPVAALYEQGRVHHLRGLGALEDQMCRMSVAGYEGKGSPDRLDALVWAIHELMIEPAASYRRPSVRGL* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0003 persistent direct high 1340 0.999 GCA_002196965.1_02201 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 25266 26450 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 3208 4392 GCA_002196965_1_94_21 GCA_002196965_1_94_21 + 118596 . PDB:6TE9_A Portal-Protein MAFPWFGRAAAPAVEVEKKASAAGKVVALAAGSGRVVWSPRDTVSLTNAGFAGNPVGFRAVRLIAEAAAAVPLLCQDRERRYDTHPVLDLLRRPNIGQGRAELFEALYGQILLSGNGYLEAVGEGAKGLPGELHVLRSDRMAVVPGPDGWPSAYEYSVGGRKFRFDMVGSPDPICHIKSFHPLDDHYGLSPMQAAAVAVDVHNSASSWSKALLDNAARPSGAIVYKGADGQGSLSPDQYDRLVSEMEMHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFHETKLAAAREIAQAFGVPPMLMGIPGEATYANYAEAHRAFYRLTVLPLVSRVASAVAWWLSEHLGAEIDLRADPDQVPALAEERDGQWKRIGEALFLTDAEKRAALGLPPVAEE* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0004 persistent direct high 1184 0.999 GCA_002196965.1_02202 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 26451 26684 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 4393 4626 GCA_002196965_1_94_22 GCA_002196965_1_94_22 + 118596 . . hypothetical protein MEGSRFVKEPFGWHDQRFDTQERIMALQFGQVERRLERIESLIEGLERRLWMTVYGVVAVILTQAVQSILTFTPKGG* . hypothetical_protein C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0005 persistent direct high 233 0.996 GCA_002196965.1_02203 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 26686 27222 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 4628 5164 GCA_002196965_1_94_23 GCA_002196965_1_94_23 + 118596 . PFAM:PF04586.16 prohead-serine-protease MNSKDYGLELKFAPGSALVSDGTRLEGYASLFGLTDQGGDIVQKGAYAASLKRLAARGDKVRMLWQHDPAKPIGVWDEIREDEKGLWVKGRLLPEIGQAREAAALIAAGAIDGLSIGYRTISAERDAKGRRLLTEVELWEVSLVTFPMLAEAKVGRKSDGALELAAAFRAAAQALRAE* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0006 persistent direct high 536 0.998 GCA_002196965.1_02204 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 27245 28411 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 5187 6353 GCA_002196965_1_94_24 GCA_002196965_1_94_24 + 118596 . CDD:TIGR01554 phage-major-capsid-protein,-HK97-family MTEVKAAAGADMPGDLGAEMLGFVNELKAFRSDIQKRLEAQEDRMTMLDRKTLSRARAPLSVEADAGAPHQKAFDAYVRHGDDGALRGLPLEGKAMTSTSDAGFLAAPTVALQVQEALNSMASLRRVANVVTVESANFEMLVDMGDIASGWATEAAAQAETGTGAVTRVVIPVHELSAMPKASQRLLDDAAFDVESWLAGRIADKFIRAEATAFISGDGTNKPKGFLTHARAANATATNVQIGTIASGATGDFAATNPANALIDLVYALGAQYRANATFVMNSKTAAAVRKMRDTDGRFLWADSLAMGQPPQLLGYPVLLCEDMPDIANGSASIAFGDFKSGYTIVERPDLRVLRDPFSAKPHVLFYATKRVGGGVTDARAIKLMVFG* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0007 persistent direct high 1166 0.999 GCA_002196965.1_02205 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 28548 29165 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 6490 7107 GCA_002196965_1_94_25 GCA_002196965_1_94_25 + 118596 . CDD:cd08054 Head-Tail-Connector-Protein MMLVELTAPALAALPVAGLREHLRLGSGFEMAQDEAETLALAGFLRAAIATIEARTGKVLLARQFRLRLEDWRDPAGQPLPLAPVNGIERVEMDDGAGEVTLVDPGVYRLAPDMQRPMLLPRGGWLPVVPEAGFVTVTFAAGFGPAWDSVPADLAQAVLMLAARYHEDRVFEGTQAAMPFSVGALIERWRSVRVLGGRGASRGRA* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0008 persistent direct high 617 0.998 GCA_002196965.1_02206 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 29162 29512 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 7104 7454 GCA_002196965_1_94_26 GCA_002196965_1_94_26 + 118596 . CDD:pfam05521 Head-Tail-Connector-protein MSLPRLTVPLILESPVRAADGMGGFALSWQPIGRIWAEMRSGAGAERFAEVGAQSVVNWRITVRAAAAGDPRRPRPEQRLRLGAGPAERRFRIEAVAESDRSGRYLVCIAKEESLA* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0009 persistent direct high 350 0.997 GCA_002196965.1_02207 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 29509 29928 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 7451 7870 GCA_002196965_1_94_27 GCA_002196965_1_94_27 + 118596 . PDB:2LFP_A tail-completion-protein MSYAATAALQAAVYQVLREDDALHALVGDAIYDAMPVAAPAGTYVSLGPEEVRDAGDMTAAGSQHDFVVSVLSGSDDANGFSAVKAAAVAVSDALETARIGLARGRLAGLWFLRAKARRAENGAGRRVDLTFRARIDLG* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0010 persistent direct high 419 0.998 GCA_002196965.1_02208 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 29940 30353 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 7882 8295 GCA_002196965_1_94_28 GCA_002196965_1_94_28 + 118596 . PFAM:PF06199.10 tail-tube-protein MAVQNGRDLLIKMDMTGDGLFETIAGLRASRISFNAETVDVTSIESEGRWRELLGGAGVRSATISGSGVFRDGTTDERARQVFFDGEVPEFQVVIPDFGTVQGPFQITSLEYSGSYNGEATYEVSMASAGVLSFNTL* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0011 persistent direct high 413 0.998 GCA_002196965.1_02209 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 30304 30672 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 8246 8614 GCA_002196965_1_94_29 GCA_002196965_1_94_29 + 118596 . pfam11836 Phage tail tube protein, GTA-gp10. This is a family of phage tail tube proteins. MKFPWQARACSASTRSDMANPLAGEVEVVLDGVPHVGKLTLGALSELEAELGAESMIALVERFESGRFSTRDVMAVLVAGLRGAGWSGDIAALGACDIRGGPVAAAHTAAAMLARAFRIEGA* mmseqs_cdd nonviral_gene C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0012 persistent direct high 368 0.997 GCA_002196965.1_02210 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 30669 30890 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 8611 8832 GCA_002196965_1_94_30 GCA_002196965_1_94_30 + 118596 . pfam09550 Phage tail assembly chaperone protein, TAC. This is a family of phage tail assembly chaperone proteins largely derived from the Rhodobacter species viral agent GTA (gene transfer agent) gp10. MRPRGLDWPGLMKVGMGPARLGGLGLTPAAFWALTPAELALMLGIEGGGGAMTRDRLAELVARYPDRPAPKQN* mmseqs_cdd nonviral_gene C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0013 persistent direct high 221 0.995 GCA_002196965.1_02211 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 30913 31581 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 8855 9523 GCA_002196965_1_94_31 GCA_002196965_1_94_31 + 118596 . UniProtKB:I0K2M4_9BACT tail-tape-measure-protein- MASKDGFGGLADAGDGTLGRSLDDSGRVTAAFEQELSRLRESMLYTNREVGSLTSGIGSGLRRAFNGLVFDGMKLSDALSTVARSMADSAFSVAMRPIQQALAGAISQGVTGLVSGAMPFADGGSFSQGRVMPFAKGGVVSQPTYFPMRGATGLMGEAGPEAIMPLRRGADGKLGVAAAGGGGRAVNVTFNVSTPDVGGFARSQSQIAARFGRMLARGDRNG* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0014 persistent direct high 668 0.999 GCA_002196965.1_02212 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 31588 32220 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 9530 10162 GCA_002196965_1_94_32 GCA_002196965_1_94_32 + 118596 . PFAM:PF09343.9 glycoside-hydrolase MAFHEIRFPASLSFGSVGGPERRTEIVALTNGHEERSSPWAHSRRRYDAGMGLRSLDDVSLLIAFFEARAGQLHGFRWKDWSDYKSSAPSVAPAFGDQVLGRGDGVRTAFELRKAYRSGPAGYWRPIAKPVEGTVLAGIGDVELAAGRDFTVDTVTGTVHFAVPPEAGAAVSAGFEFDVPVRFDTDRISVSVASFHAGDLPDVPVIEVRL* phrogs_hmm nonviral_gene C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0015 persistent direct high 632 0.998 GCA_002196965.1_02213 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 32217 33038 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 10159 10980 GCA_002196965_1_94_33 GCA_002196965_1_94_33 + 118596 . PFAM:PF05100.11 Minor-tail-protein MKGETIARAWAVTRRDGLVLGFTDHDRMLAFGGITFRPDTGLSAAAVVQGAGLSVDNTEASGALSDDAITEVDIMAGRWDAAEVRLWEVDWANTANRVLVFRGHLGEVSRSGRSFRAELRGLSEPLNRTQGRVYHPRCSAQLGDGQCRFDLGAEGYSAQGVVRAHEEGERLTLGGIANHEAGWFERGRLIVLSGAAAGLEGLVKSDLAGPGGREIALWAALGIAPAAGDQVKLVAGCDKRAATCRLKFLNYANFRGFPHLPPEDWLIAPQVGS* hallmark_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0016 persistent direct high 821 0.999 GCA_002196965.1_02214 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 33035 33463 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 10977 11405 GCA_002196965_1_94_34 GCA_002196965_1_94_34 + 118596 . TIGR02219 putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by pfam00877 and by Anantharaman and Aravind (). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions] MSQRIVAAARGWIGTPYVHQASVKGAGTDCLGLVRGIWRELYGPEPEALPAYTPDWGEAGAQELLLGGAGRLLLPAGPEAAGDVLIFRMRSGAIAKHMGILAETGAGASFVHAYDRHGVVESPLSAPWRAKIAGRFRFPPLT* mmseqs_cdd nonviral_gene C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0017 persistent direct high 428 0.998 GCA_002196965.1_02215 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 33479 37372 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 11421 15314 GCA_002196965_1_94_35 GCA_002196965_1_94_35 + 118596 . PFAM:PF13550.5 tail-protein MATILLAAAGASIGAGFGGTVLGLSGAVIGRAVGATLGRVIDQKLLGSGSKAVETGRVDRMRIQTAGEGTPIPRIWGQMRVPGHAIWAGPLVEVRRTQGGGGKGSSPSVTEISYRLSFALALCEGPILGVGRVWADGEEISPDDLNMRVYLGDEAQLPDHAIVAQEGDEAPAYRGIAYVVLEDLGLERWGNRVPQLSFEVTRRAKEGRGLSREVRAVAMIPGTGEYSLATTPVSYDLGLGETQVINRNTPIAGTDFRASLRILGRELPNVGSVSLVVSWFGDDLRVNHCTVRPKVEDKSRDGQGMAWRAGGIGRDAAVEVARVGGRPIYGGTPADGSVIEALRALAASGRKAVFYPFILMEQLAGNGRADPWTGAADQPVMPWRGRITTSIAADRAGSPAGTAAAEDEVAAFFGTARASDFSREGDEIRYSGPDEWSYRRFILHYAHLCAAAGGIDAFLIGSEMVGLTQIQGADHRFPAVEQLIRLAADVRAILGDAVKIGYASDWSEYFGYHPGNGDVFFHLDPLWGDDNIDFVGIDNYMPLSDWREGENHLDAAWGRIDNPAYLRANVAGGEGFDWYYARDVDREMQIRTPISDGLYHEHWIWRYKDIRGWWANEHRNRVGGQRSARPTAWVPRSKPVWFTEMGCAALDKGTNQPNKFLDAMSSESRLPWFSDGRRDDLVQAAYVRAMTEYWGDPANNPLREAGERIGAGRMIDMSRAHVWCWDSRPFPAFPARTDLWSDGPAWERGHWLNGRAGAVPLADVVAEICAAAGVAAYDTQGLAGLVRGYALTGSETGRAALQPLMLAYAFDALERDGVLRFVMRDARVDASLGPDDMATTDELAQVEIGRAAEAEVPGRVRLTHVEAGGDYAVRTAETTMPGGEFLAVSDSELPMALTRAEGLAMAERWISESVIARDTARFALPPSLGHLGPGDVVALVEPRAGARRWRIDRVERAGAMTVDAVRVEPGVYRPARVIEGQSVARAFSPPIPVWPVFLDLPLLRGDEVPHAPHLAVTATPWPGAAAVWVSAQQAGGYALNTTVPAASIMGVTLAPLAAARPGVWDRGPALRIRVKGGALESATETALMSGANLLALGDGSAEGWELLQFRDARLVSPGVWDIATRLRGQAGTDAFMPEVWPAGSTVVLVDGSARQVDLAPSALNQMRHWRIGPATRAVDDASYRHVALAFRGAGLRPLSPCHLSVRGSTVTWVRRTRVQGDGWEGADVPLGEAQERYSASVVRDGAVLAQALVGEPRWAVPADVWSSAKAGGAFEIRIAQLSDTFGAGPQARMRIDG* common_virus_hmm common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0018 persistent direct high 3893 1.0 GCA_002196965.1_02216 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 37365 38078 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 15307 16020 GCA_002196965_1_94_36 GCA_002196965_1_94_36 + 118596 . pfam10983 Protein of unknown function (DUF2793). This is a bacterial family of proteins with unknown function. MAENATANMDLPLLMPAQAQKHVTVNDALLRLDGQVDLVLQSLTRTTPPEVVADGLCWAVPQGAVNAWEGQAGKVAIGANGGWVFFRPRFGKRALVADTGVPAIHNGTTWVEGAVSLGQHGSGLIVRQMAEDVTLGVGNTFTTTMVVPAGAMVVGVTARVLTAITGSLTSWTLGDTAVPNRFNENLGKAANSWVRGMLGSPVTYWQPTALRLGAAGGQFAGGRVRVVLHWWELRVPD* mmseqs_cdd common_virus C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0019 persistent direct high 713 0.999 GCA_002196965.1_02217 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote cenote CDS 38147 38989 GCA_002196965.1 NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965.1_NIPZ01000036.1 GCA_002196965.1|NIPZ01000036.1 GCA_002196965_1_94 GCA_002196965_1_94@C1 16089 16931 GCA_002196965_1_94_37 GCA_002196965_1_94_37 + 118596 . PRK11132 serine acetyltransferase; Provisional MNLQKDLIEKLPEDARADSMGAVWTRIQREARIAVRDEPLLGALIHAGLLHHATFAAALAYRFSLKLASREMSEQILREIADDAFGRAPELAQAAMADLLAVYERDPATHRLMQPILFFKGFQALQAYRIGHWLWQQGRSDMAYFVQMRCSEVFGVDIHPAARIGTGVMIDHAHSIVIGETAVVGNDVSMLHSVTLGGTGKEDGDRHPKIGNGVMIGAGAKVLGNIHVGHHSRIAAGSVVLSDVPPCKTVAGVPARIVGDAGCTDPSNTMNQLLGHEGLF* mmseqs_cdd nonviral_gene C1 16931 22059 38990 GCA_002196965.1|NIPZ01000036.1@region_22060_38990@tool_cenote_CDS_0020 persistent direct high 842 0.999 GCA_002196965.1_02218 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote cenote tRNA 440 525 GCA_002196965.1 NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965.1_NIPZ01000054.1 GCA_002196965.1|NIPZ01000054.1 GCA_002196965_1_114 GCA_002196965_1_114@C0 441 526 tRNA-Met tRNA-Met - 51323 . tRNAscan-SE score: 26.2 Met NA tRNAscan-SE . C0 51324 0 51324 GCA_002196965.1|NIPZ01000054.1@region_1_51324@tool_cenote_tRNA_0001 . . . . . . GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote cenote tRNA 13199 13270 GCA_002196965.1 NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965.1_NIPZ01000087.1 GCA_002196965.1|NIPZ01000087.1 GCA_002196965_1_149 GCA_002196965_1_149@C0 13200 13271 tRNA-Asn tRNA-Asn - 57248 . tRNAscan-SE score: 78.9 Asn NA tRNAscan-SE . C0 14235 0 14235 GCA_002196965.1|NIPZ01000087.1@region_1_14235@tool_cenote_tRNA_0001 . . . . . . GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote cenote tRNA 8272 8347 GCA_002196965.1 NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965.1_NIPZ01000015.1 GCA_002196965.1|NIPZ01000015.1 GCA_002196965_1_52 GCA_002196965_1_52@C0 8273 8348 tRNA-Met tRNA-Met + 39181 . tRNAscan-SE score: 73.7 Met NA tRNAscan-SE . C0 21336 0 21336 GCA_002196965.1|NIPZ01000015.1@region_1_21336@tool_cenote_tRNA_0001 . . . . . .