core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	758543	759349	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	1	807	GCA_002205555_1_1_733	GCA_002205555_1_1_733	-	3385620	.	COG3706	Two-component response regulator, PleD family, consists of two REC domains and a diguanylate cyclase (GGDEF) domain [Signal transduction mechanisms, Transcription]. 	MFALDAKTMQRIAPVVRRVLIVDPNPAAARLLMDLLKGFGSREIVVEGDEARVLDLAREMEPGLICTERAGPKLDGEALVRRIRRSSLSCRRAPIIMVTAEATASAIKGARDSGVHEFLRKPFTSGDLQRRIENLATKPRDWVEAVGYVGPDRRRFNSDDYAGPQKRKADKPRSGAEAAVAVKDQAMRILFSALTQFDSDPMQAVRAIKQQAETLKALAIKTGDAPLAIAAAGLDTVLAAGAPTKAALTAPVQAVLKLAPPETLARAG*	mmseqs_cdd	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0001	persistent	direct	high	806	0.999	GCA_002205555.1_00745
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	759427	760722	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	885	2180	GCA_002205555_1_1_734	GCA_002205555_1_1_734	-	3385620	.	PRK01117	adenylosuccinate synthetase; Provisional	MANVAVVGAQWGDEGKGKIVDWLSNRADMVVRFQGGHNAGHTLVVDGKVYKLALLPSGVVQGKPSIIGNGVVVDPWHLVGEIEKIQAQGVAITPDILTIADNACLILPIHPALDVAREAAASAPGAKIGTTGRGIGPAYEDKVGRRAIRVCDLANEDDLKIKIDRLRSHHDPLRAGLGLEPIDPAALLAQLLEIAPKILPYVKPAWRVLDAAQKAGKRVLFEGAQGAFLDVDHGTYPYVTSSNTIAGQAAAGSGVGPRGVGYVLGIVKAYTTRVGEGPFACELNDEVGEHLAVVGREVGVNTGRARRCGWFDAVLVRQSVAINGIDGIALTKLDVLDGLKTLKICVGYRINGEVLDYLPSSLKDQASAEPVFEELEGWTESTGGVRSFKDLNAHALKYVRRIEELIGAPVALLSTSPERDDTILMRDPFQG*	mmseqs_cdd	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0002	persistent	direct	high	1295	0.999	GCA_002205555.1_00746
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	760816	761976	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	2274	3434	GCA_002205555_1_1_735	GCA_002205555_1_1_735	-	3385620	.	PRK03080	phosphoserine transaminase. 	MTPKPAAKPARPWFSAGPTAKRPGWSLAGLPTNLMGRGIRAPEVAERFAHGLKLTREVLSPPDDYVLLYTPGSDTGAVEAALWCMLGERPVQVVAYENFGQVWATDVRDHLKLEPEVLTAPWGELPDLSQVDPKKDVVFPWNGTTSGVRVPDGDWIADDREGLTICDATSAAFAMDLPWDKLDVTTFSFQKALGGEAGIGLMVLSPRAVARLDTYRPDRAVPKVLRIVDKKGFDRTLADGVVMNTFSVLTIEDWIDALDWAKGAGGLPALIARTDANYAALAEWVERTDWIDFLPERPEIRSTTSVCLKFVDPRIAAMDEAGQKAFVKRFKGLLEGEGAVYDMEPHRYAPPGLRLWCGCTVETADVVAATPWLEWAFQAAVHELAG*	mmseqs_cdd	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0003	persistent	direct	high	1160	0.999	GCA_002205555.1_00747
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	762030	762965	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	3488	4423	GCA_002205555_1_1_736	GCA_002205555_1_1_736	-	3385620	.	PDB:1GH6_A	Large-T-antigen	MAGDPYQELGVSKGASADEIKKAFRKLAKELHPDKNPGDKAAEERFKRITAAFDLLGDAEKRAKYDRGEIDADGREQFRGFSGGAQGGRPGGGGFGGFGFGGRGEGGPGGRASFDDIDLEEIFGAFGGGGRGAGRGFGGGRGQDVRATLDISLEDAIAGTTRRIQFSDGRMLDVAIPKGASEGQVIRLKGQGAPGRGGQAGDALIELRIQPHPVFKRDGADLTMDLAVSVPDAVLGGKIQVPTPEGAVMMTIPKGSNSGKVLRLKGRGAYANGKRGDLLAKLVVTLPETPDDELVRFATEWRERRPYKPGR*	rep_hall_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0004	persistent	direct	high	935	0.999	GCA_002205555.1_00748
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	763046	766750	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	4504	8208	GCA_002205555_1_1_737	GCA_002205555_1_1_737	-	3385620	.	PFAM:PF13550.5	tail-protein	MAQVVLGGIGSALGGPIGGFIGGVLGRATDSWLIAGLSPARQVGPRLEGLKLQSSAEGAPMACVFGRARVVGQVIWAARFLERKEKRSGGKGGQKTVDYAYSLSFAVALCEGAIDGIGRVWADGQPMDMAGVTMRLHRGTEDQTPDPLIEAVEGRAPAYRGTAYVVFEDLPLDAYGDRPPQLAFEVFRRPQGAAPQLEDRLEGVCLIPGAGEFCLATEPVMRREGLAKSTPENVHLTAGQTDLEASLDQLMAQAPRLKRVSLVLGWFGDDVRMGHCRIRPGVERRDKPTQPLVWGVAGVTRADAHLISRVDDGEGGEGPAYGGTPSDESVRQAIRALKARGLEVTLYPFVFMDCAGYPWRGRITGTDGAGATAEVAALFGTAGGWGLRRLALHYARMAADEGADGLLIGSEMRGLTWTRDADGGFPAVAQFRALAAECRAVVGSEVKLSYAADWSEYFGWQRDGEVRFHLDPLWADPTIDYVGIDWYPPMGDWRGGDGGRDAEDFKGPSDPAYLAAQVAGGEGYDWFYASAADQAAQRRTPITDGAHGEDWIWRYKDLKGWWSNRHHERVGGVRQAAPTAWVPGMKPIRLTEFGCAAVDRGGNAPNLFQDPKSSENALPPYSTGARDDRMQRRLIEAVLGHYAQPVNNPVSGVYGGPMLQGADVWCWDARPYPAFPALHEVWADAGAWRTGHWLNGRMGGDARGLIEAILKRGGLSETDYTVGAVDGGVTGYVIDRPMATKDALAPLVQALGATTAERDGRVAVLGETAREMTLHQAALALPDKGGSAAADRRLTPRPGAARLRFIDEAADYQLGAVTVRGDGEGGGVDAALPAVVGTGLATAAAQRLLQGEAAERLTLKLGPLEALRLEPGDVTAVEGRAGDWRVERLDWDETPSATLTPMVEVVVVDAPEDWRGDGGGAGTPGAPFLVLLDLPPLPGEEADGRPVVAAAAEPWTPMALHGGVSVDSLTQRVVVKTPATVGTLTAPLRPGVVGRWDETGVLSVRIEGQAPQSRAVEAVLSGANLLAVRSADGWELAQFRRAELVGGDVWRLSGLLRGQQGTEEAAARGAEPGALVVVLERGMARAQVDAVERGLPRIWRAGPVGSPPGGAGTTEVGFVWSNRNAAPWRLAHLKARPEGGGWRLSWLPRVRQDGDGWEGEPVEVDPRRFRVRVLDGAVVRRIWEVEGLAAVYSAVEVAADFPGGVGSIAKVAVAQWGDGYGWGAEAMVPLVLPI*	common_virus_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0005	persistent	direct	high	3704	1.0	GCA_002205555.1_00749
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	766763	767212	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	8221	8670	GCA_002205555_1_1_738	GCA_002205555_1_1_738	-	3385620	.	TIGR02219	putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by pfam00877 and by Anantharaman and Aravind (). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions]	MRDAERRARVVAAARGWLGTPYRHQASVKGEGADCLGLVRGVWREAVGEEPEAPPPYRPDWAEVGGEETLWAAARRRLVEIAPEQAGLGDVLLFRMAAGCPAKHCAVLSAVEGPERRMIHAYWGRSVVESWMGAWWRRRLVAAFRWPEI*	mmseqs_cdd	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0006	persistent	direct	high	449	0.998	GCA_002205555.1_00750
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	767209	767862	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	8667	9320	GCA_002205555_1_1_739	GCA_002205555_1_1_739	-	3385620	.	PFAM:PF05100.11	Minor-tail-protein	MRNVPDELAARIESGAATLCHVWLLRRADGRAMGFTDHDRDLEVEGAACRAASGWTGGAGDGEVGLAAGALSASGGLDDAAITEEDIAAGRYDAAEVELWRVDWMRPDLRVRLWKGRLARIRRENGRFVADLDGPMAALERVVGRTYGRGCDAVLGDGRCGLDAAAVGGRNCDKRWATCTSVFGNGVNFQGFPDIPGEDFLTARPAAGRNDGRSRRR*	hallmark_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0007	persistent	direct	high	653	0.998	GCA_002205555.1_00751
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	767866	768477	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	9324	9935	GCA_002205555_1_1_740	GCA_002205555_1_1_740	-	3385620	.	PFAM:PF09343.9	glycoside-hydrolase	MAFHEVRLPARLAFGSTGGVERRTEITTLASGFERRSTPWADGRRRYLIGAGLRSLDDMAALTAFFEARRGRLHGFRFRDFADFRSGAPGAAVTPLDQAIGTGDGQARVFQLSKAYGDHRRLIAKPVEGSVRVAVAGVETAAFNLETTTGRVTLATPPPQGAAVTAGFAFDVPVRFDADRMEVTLESFGAGRMVAMPLIEVRV*	phrogs_hmm	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0008	persistent	direct	high	611	0.998	GCA_002205555.1_00752
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	768641	769342	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	10099	10800	GCA_002205555_1_1_741	GCA_002205555_1_1_741	+	3385620	.	COG3152	Uncharacterized membrane protein YhaH, DUF805 family [Function unknown]. 	MRGEILSYDDVSGTGLISGDDSIRYGFTRADIQAGGTVAVGARVDFVPEGMEATQIMILASTAPAAAFGQAAASSTGGAPLGAYDFATAMLSFNGRLRRQHFWISWLILLGAGVVLGWIPILGALLSIAMIWPNLAITVKRLHDMGKSGWFAVIPWVANIVGFIMIIGAVGTAVITNPQAFESEDPSVALSMLGSMMGGLSIMLLVGLGFLLWIGISDSQKGDNKFGPNPKGE*	mmseqs_cdd	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0009	persistent	direct	high	701	0.999	GCA_002205555.1_00753
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	769431	769958	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	10889	11416	GCA_002205555_1_1_742	GCA_002205555_1_1_742	-	3385620	.	PFAM:PF10145.8	minor-tail-protein	MTDGFRPDGIDAVPVKAAEAAAALEALKEPAERAAASIEDAFGRAGASLTRSLTRAAADGEVTLAELARAVLNAVNAAAGARGGGGLAGAIAAALGGFGGARADGGPVMGGGAYLVGERGPEVFRPASAGTVEPMGGATGVTVNVTVDGGAEGLLRSETQIARMLARATALGARG*	hallmark_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0010	persistent	direct	high	527	0.998	GCA_002205555.1_00754
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	769951	770136	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	11409	11594	GCA_002205555_1_1_743	GCA_002205555_1_1_743	-	3385620	.	PF09550.10	Phage tail assembly chaperone protein, TAC	MTPQDRQWAEMMQAAARMGVGPEGFWRLSLKEWRMLTAGPAQAAPLGRGELERMQERWPDD*	hhsuite_tools	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0011	persistent	direct	high	185	0.995	GCA_002205555.1_00755
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	770136	770426	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	11594	11884	GCA_002205555_1_1_744	GCA_002205555_1_1_744	-	3385620	.	PFAM:PF12363.7	tail-protein	MVNGVRGEVVARLAGAERKLCLTLGALAEIETGLGVAGMAALAERMKALSARDLMVVLAALLRGGGEAALAEGLATAPVEPREAAEAVAKAFAAAA*	phrogs_hmm	hypothetical_protein	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0012	persistent	direct	high	290	0.997	GCA_002205555.1_00756
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	770426	770836	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	11884	12294	GCA_002205555_1_1_745	GCA_002205555_1_1_745	-	3385620	.	PFAM:PF06199.10	tail-tube-protein	MSAQRGKDILLKIEGAGGAFTTVAGLRARTISLNAKTVDATDSDSAGRWRELLAGAGVKSAAVSGQGIFRDAASDALIREAFFEQAAKTWRLIVPDFGVLEGPFLVAALEYAGEHEGEASFALSLASAGEVTFSAL*	hallmark_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0013	persistent	direct	high	410	0.998	GCA_002205555.1_00757
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	770838	771245	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	12296	12703	GCA_002205555_1_1_746	GCA_002205555_1_1_746	-	3385620	.	PDB:2LFP_A	tail-completion-protein	MKDHEGALVKALVAHLGGDGALQALLGDPVRVWDEAPQGAGFPHLVIGRCESRPLNADGGGVEQRLTLTCASRFRGLEEARAVAAAVRARVADAPLEADGVRAVSVAVTFTDLFRSADLKRAWAVMRLRAVTEEI*	hallmark_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0014	persistent	direct	high	407	0.998	GCA_002205555.1_00758
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	771242	771544	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	12700	13002	GCA_002205555_1_1_747	GCA_002205555_1_1_747	-	3385620	.	CDD:pfam05521	Head-Tail-Connector-protein	MKVVAALVRPVEAQTPYGGQVVSYEPVGSLWLALGARRRRERTEGGVTRGVETLSATVRADPRLEEGLVVRFGGADWGVVGIEADPKAAGRVRLNLERAR*	hallmark_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0015	persistent	direct	high	302	0.997	GCA_002205555.1_00759
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	771556	771822	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	13014	13280	GCA_002205555_1_1_748	GCA_002205555_1_1_748	-	3385620	.	CDD:cd08054	Head-Tail-Connector-Protein	MSAPVSLTEAKLFLRVEHEAEDGLIQTLIDAAKARVEGEVGLSLTSTSPAPLRLAVMMLVMRAYERGDGEMSAAPVEGWIAPYRVVRL*	hallmark_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0016	persistent	direct	high	266	0.996	GCA_002205555.1_00760
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	771987	773228	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	13445	14686	GCA_002205555_1_1_749	GCA_002205555_1_1_749	-	3385620	.	CDD:COG4653	Major-Capsid-protein	MKEIKTVSGHPEARAAMHEMMAAFEAFKGANDARLDEIEKKASADALLEEKVARIDQAVAQAQARMDRALSESRRPILSASGLGAEPPVAVAAPEAKAAWDGYMKSGQAHGLELKAGLSSASNSAGYVVPPETERAIERRLMAGSPMREIATVRTVGSGVFRKPVSTAGVQAGWVAETAARPETDPATLALLEFSSADLYACPAATQSLLDDALIDLDEWLAAEVEDAFAAQETAAFVSGDGVNKPKGFLAYANAAEGTQTWGQIGTVASGAAGAFASASPVDKLIDLIYAPKAQYRPNGRFVMNRRTVSAVRKFKDADGNYVWSPATRPGETASLLGYPVTEIETMPDVAANSLSIAFGDFARGYLIVDRAGVRVLRDPYSAKPYVLFYTTKRVGGGVQNFDAIKLMKFAAS*	hallmark_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0017	persistent	direct	high	1241	0.999	GCA_002205555.1_00761
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	773356	773787	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	14814	15245	GCA_002205555_1_1_750	GCA_002205555_1_1_750	+	3385620	.	.	hypothetical protein	MFKIAVAAVSAAGLMSCTAHDASAQRPSAASSSETPRLSPGQGRLSAYTSINLRMFETLGACEHLNRDSAGDQAFAAHLHRHAPTADQAERRALREAYDRGRSPAVASRQTPETCAIALRGYRQETPELHGRRDDRPLASPKL*	.	hypothetical_protein	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0018	persistent	direct	high	431	0.998	GCA_002205555.1_00762
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	773791	774321	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	15249	15779	GCA_002205555_1_1_751	GCA_002205555_1_1_751	+	3385620	.	COG0703	Shikimate kinase [Amino acid transport and metabolism]. 	MRIVFLYGPVGAGKLTVGRELARLTGLPLFHNHFVVDAVGAVFDFGSEPFIRLRESFWLQTFAEAARAERSLIFTFAPEATVDPGFPVRVQAVIEPFGGVVTFIALAVSPEEQERRIVQPSRAAFGKLQSVDLLRRLRADFDASLAAMPPADLTIDTEACSPSQAAERIAAHLADR*	mmseqs_cdd	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0019	persistent	direct	high	530	0.998	GCA_002205555.1_00763
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	774327	774473	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	15785	15931	GCA_002205555_1_1_752	GCA_002205555_1_1_752	-	3385620	.	.	hypothetical protein	MDKKSGGTFVLGVCGGIILGALIDNMAIGLLLGFAVGFGLVKLNRRKS*	.	hypothetical_protein	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0020	persistent	direct	high	146	0.993	GCA_002205555.1_00764
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	774526	775113	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	15984	16571	GCA_002205555_1_1_753	GCA_002205555_1_1_753	-	3385620	.	CDD:COG3740	head-maturation-protease	MATSDLKTKRFLLTYPPYIPYSGRRWPEGPDEGLRDPSPDRARTTAAPPCAVSLSRKGRGTLFIAGYASLWGVADLNGDVTARGVFADSLAKTGAGGVRMLHQHESRAVVGVWDRMVEDERGLWVEGRIEDWSAEARYAAALTRAGALDGLSIGFRAMKARRDGRLRVLSRAELWEVSLVTFPMLPGARFRAKTD*	hallmark_hmm	common_virus	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0021	persistent	direct	moderate	555	0.944	GCA_002205555.1_00765
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	775247	776074	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	16705	17532	GCA_002205555_1_1_754	GCA_002205555_1_1_754	-	3385620	.	.	hypothetical protein	MFPKAAIVAAMIALAGCASTPPPEVRMIPTADHGVGVRFSRGNALMVSNGPSGAIMLLPVRYNDTQKFFFSIAAFNTSGYPINIGSEDVRLYLDGQPYSVQDFDYLRHSARTTAQREMNLAWADAAVEYFLTLQEMEDHPRRHDIAYRSASGQLQASHDHIQRRLRQTISTLGRTMLETTTIDPGTAHGGAILAEQIVIPEGMVRDMVIEVRFGGFPHRFRLNLAPSGTYAPTPVDIPAVPAQITQELMRTRETWHWTDGPPPSPAIFKGMPVIE*	.	hypothetical_protein	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0022	cloud	direct	high	827	0.999	GCA_002205555.1_00766
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	776105	776623	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	17563	18081	GCA_002205555_1_1_755	GCA_002205555_1_1_755	-	3385620	.	.	hypothetical protein	MKKIVFAVSVLTAVVAFGGAASAQADACSTNGGYPPGSPNAVMARMRNIASGAYAACVEAQRARTPPVNWTPTRIRTAARQAVTDKLRDPSSAQFRNVRRIEHSNGSTMFCGEVNGRNAYGGMSGFQRFEAGVDRTGDASALIDGGEELNAAYFEGAWNQFCGRIAGTPVQF*	.	hypothetical_protein	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0023	cloud	direct	high	518	0.998	GCA_002205555.1_00767
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	777186	777770	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	18644	19228	GCA_002205555_1_1_756	GCA_002205555_1_1_756	-	3385620	.	pfam18731	Swt1-like HEPN. Swt1-like HEPN. This HEPN domain might have a role in binding and sensing unspliced pre-mRNAs that are specifically targeted by the Swt1 nuclease at the nuclear envelope.	MTNASDRIRLFALNNLAIESAIQRVEREHDLDLGHRPAIEGGLDETYYPQFEEKIRREAADMSAHYRVFYCLENSIRSLITEVLQEKHGTGWWTSKVPDTVKNHVAGTQKKERESGIAVRSQEPIDYTTFGELGEIIKSNWHDFTDIFQDIKALEKVIATLNVLRGPIAHCKPLAEDEVVRLHLSVRDWFRSMG*	mmseqs_cdd	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0024	cloud	ambiguous	low	7	0.012	GCA_002205555.1_00768
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	777763	778392	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	19221	19850	GCA_002205555_1_1_757	GCA_002205555_1_1_757	-	3385620	.	pfam17278	Family of unknown function (DUF5343). This is a family of unknown function which is found in Bacteria and Archaea.	MAFPPFMNSTGLIGKIFEKIQQAKVPPRYTQDFQSTVLGFGSGSARPFIPFLKRLNFIQSDGTPTELYTRFRNADSSGAAMAEAMRIGFADIFQKNEFANDLTDDKLKNLVVEVTGKEPGDGTVSAIVGSFKACKQLADFDSADAAKKKNEHEAPDIAKSIVKYEPDRRQSGRDIRIGYTININLPETTNVEVYNAIFASIKQNLLTDD*	mmseqs_cdd	nonviral_gene	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0025	cloud	direct	high	629	0.998	GCA_002205555.1_00768
GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote	cenote	CDS	779015	779278	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C48	20473	20736	GCA_002205555_1_1_758	GCA_002205555_1_1_758	-	3385620	.	.	hypothetical protein	MNDNRLVASGFDADISDLESSNLNYALTETGCRLKMRLHCKRQFDQIQLGKIIVGQANDFSRFVFHAQQDHAAFIIGHTGNRAHDRR*	.	hypothetical_protein	C48	20736	758543	779279	GCA_002205555.1|CP021995.1@region_758544_779279@tool_cenote_CDS_0026	cloud	direct	high	264	1.0	GCA_002205555.1_00769
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	788689	789948	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	1	1260	GCA_002205555_1_1_767	GCA_002205555_1_1_767	-	3385620	.	4KKS_A	Membrane fusion protein	MKTSRTSAAALGCVLAAVALTLAACGGGDKAAKPEGEAAAAADYERGPHNGRLLRDGDFAIEVTIYEEGPEPLFRLYPYLNDKPLDPKQVQANIALSRLGPKVDRFTFTPENDYLASPGVVSEPHSFDVAVSAVRAGKRSAWTYQSYEGRTVISADAAQAGGVTTQQAGPAVLGESLPLSGRVEITPEGQAEVHARYPGRVMSMTVELGQRVSRGQVVARVESSESLQTYSVTAPISGVITAKNVNPGSITGGGAPMLTIGDPTRLHAEFFLYPRDAERVRVGQRIEIKSQAGEHTASGVIEAILPADDVLSQTLVAHVELPYQGGVWRPGLGVSGLVQVGQGEVPLAVRTKALQPFRDFTVVYAKVGDTYEVRMLDLGRRTEEWTEVLGGIEPGTTYVVDGAFLIRADIEKSGASHDH*	hhsuite_tools	hypothetical_protein	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0001	shell	direct	high	1259	0.999	GCA_002205555.1_00777
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	789945	790982	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	1257	2294	GCA_002205555_1_1_768	GCA_002205555_1_1_768	-	3385620	.	5NSW_C	Multidrug efflux outer membrane protein	MVENLPTLGGGDILGRTETTLTYEQKLERGGDRSARTGLAQSEGLLITAQAQIAQLDRLELVQRAWVDAMAAEAQLEIARERLSLAERFQAEVQRRVNAARDPLFAGARAEAELAQAQIDFDQAEIAVRVARIVLAKFWDGAADFRMGASDFEDTSAARVVAGAVAQADLEAFRARQAIADAQVRLEQARAVPDPTVSVGVRHIWDNEVALVFGGSVPLQRYDRNQGAIDRARADGLAAQADQNALRLEREREIARLQVQLLARANEARRIAEETQPQAERAVVLVREGFARGGFTYNDVMSAHAALLQTKARRVAVLQTFHNDRARLDRLTGAHADLLGLETQP*	hhsuite_tools	hypothetical_protein	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0002	shell	direct	high	1037	0.999	GCA_002205555.1_00778
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	791326	791700	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	2638	3012	GCA_002205555_1_1_769	GCA_002205555_1_1_769	-	3385620	.	.	hypothetical protein	MVAVQMHGVQNNQHRIEHGLQFPGVSYEDAADLAHDHDHGHSHDAATNDDGSANAQTMDVADESGKSPLSHHHHNGGDIHVALATPVHPTTVGVVTSLDLGPAPDAVPPGAVLDAPHQPPRQNA*	.	hypothetical_protein	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0003	cloud	direct	moderate	239	0.637	GCA_002205555.1_00779
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	792411	792773	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	3723	4085	GCA_002205555_1_1_770	GCA_002205555_1_1_770	+	3385620	.	PFAM:PF09665.9	endonuclease	MPRRCPVLGLPLTVGTARSASSPSLDRINPAKGYQPGNVRVISDQANRLKSNRSLEEVVRLSQRGAPERRAQYAAVAAYMEREALLAEVKRKAAIDPSPSRPWQVIADFLENRFREYIPR*	phrogs_hmm	hypothetical_protein	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0004	.	unmatched_CDS	none	0	0	.
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	792938	793267	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	4250	4579	GCA_002205555_1_1_771	GCA_002205555_1_1_771	+	3385620	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	MKNDERDAPSLSPLENRWLTAEEAAAYIGVKVETLSKWRLRGHGPRYSAALRRDPRYRLSDLMEHMAAQMVSNTREARTVRISYAADHSPMTLRRPMRPLRSVQSTDRG*	phrogs_hmm	hypothetical_protein	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0005	cloud	direct	high	329	0.997	GCA_002205555.1_00780
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	793579	794907	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	4891	6219	GCA_002205555_1_1_772	GCA_002205555_1_1_772	-	3385620	.	PDB:1Z19_B	Integrase	MTNHENRKGNRARLTRKLIDKAQADHVRGKRVRLWDTDVPQLYVQITPGGSASYYIRYPRADGSKNDFRLCAASIPPEDARRGALQRLAALQLEGIDPAVERRDDIAAAKRGKVETVSALAELFDEAHPHFSEGDKRARSYLLGRFVLPRIGDRPFREISKPEMKDLVRSIQSQIATDARHPRFNGHSTANQIQSIVRRMYNWAISDREWLSENPASFPALFEDNLEQRPEYFDPDSFAKIWHANVARATGKDTRISVALATLLYLVTLQRPVDVARAQREHINLSEATWIVPKHLTKKKRKPYYVPLTPLAMRLIQAQMERSSSTYLFPTCGRGDHLLRGSMGGAFMAMRNQMVEAGELPSKELQLYDGRRYGRTVIEEDLGFPERVAEHVINHYDENQPSRRYNVRTMREKVRAAQNAWSDEIARMVGPHAFSPAPSDKQ*	common_virus_hmm	common_virus	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0006	cloud	direct	high	1328	0.999	GCA_002205555.1_00781
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	795166	795390	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	6478	6702	GCA_002205555_1_1_773	GCA_002205555_1_1_773	-	3385620	.	.	hypothetical protein	MEAMKKIPVALIAALLVQTVGGLVWAGGAAARIATLEQRVGEQRLVAERLARLEAQGEAVRAAVERIERQLEGM*	.	hypothetical_protein	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0007	persistent	direct	high	224	0.996	GCA_002205555.1_00782
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	795390	796556	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	6702	7868	GCA_002205555_1_1_774	GCA_002205555_1_1_774	-	3385620	.	PDB:6TE9_A	Portal-Protein	MDWRRPFGRRRMAAPEIKDSRAGPLIALTSAGRARWTPRDYAHLADEGFGKNAVAYRCVRMIAEAAASTPLMVMVGGVRSAEHPLARLIDKPNPEQSGGELMEALYGALQTAGNAYVEATGDADGDGAPDELWALRPDRVKVVPGRAGWPEAYEYAVGGRAVRIARHGDGWSPVMHLKLFHPTDDHYGFSPLEAAAFAIDVHNASGAWNKALLDNAARPSGALVYGAKDGERLTADQFEALKAELGEAHAGARNAGRPLLLEGGLDWKPMSLTPHDMDFIAGKHAAAREIALAFGVPPQLLGIPGDATYANYREANAAFWRGTVIPLVRKAAGAMTGWLGSRFVDCRIEPDLDAVPALQVERDALWARLNAASFLTDEERRRMAGVEA*	hallmark_hmm	common_virus	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0008	persistent	direct	high	1166	0.999	GCA_002205555.1_00783
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	796741	797985	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	8053	9297	GCA_002205555_1_1_775	GCA_002205555_1_1_775	-	3385620	.	CDD:COG5323	Large-Terminase	MAQQRLEQATREELLRLLKATPRLNDDQVWPPPDTDWRTWVLLGGRGSGKTFAGGFWMNELAKAKDRTFALVGPALHDVREVMVEGPSGLKAQAPGDNRPRWEAGRRRLVWPSGAAAYAFSAEDPDSLRGPQFHAAWADEFCAWRNIEATLSNLRFGLRLGADPKLAITTTPRPIPALRRLLAEPGVVKARLATKDNAAHLAPGFLGHLQALYAGTRLEAQEMEGLVVEADGALFRAEDLARARGGRPAKFERVVVAVDPPASAHGDACGIVAAGRRDRTGYVLADRSARGLSPAGWARRAAETAREFEADLVLAEANQGGEMVRTLLGQADCPAQVRLVHASRSKKARAEPVAALYEQGRVVHCGAFPALEEEMMALGSETPGAKSPDRADALVWALTHLLLAGKTQPRLRAL*	hallmark_hmm	common_virus	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0009	persistent	direct	moderate	1125	0.904	GCA_002205555.1_00784
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	798462	800873	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	9774	12185	GCA_002205555_1_1_776	GCA_002205555_1_1_776	-	3385620	.	TIGR02956	TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems]	MGFVAAQKRAKTGARDAFDRLTAIACAAFRAPHAMITVLDEDRAVFLSGVGLDEISIPRMSSVSHALASLGPEAVVAVEDALEHPVYRDHPMVTGEPRVRFFLGATVCAGDGRPAGAIGVMDVKPRPAPTETELRLIRELAGLAGELMEHAEAMRQEAARLETLRLAEDMVGVGRWRYEITTGAVTWSDEIYRIHAIAPGAFSPKLEDVFSHYHEDDRAEIQRLVERALKTGEGYTFKLRLVGADGVERVVAAEGATEKDATGRVIALFGVLQDVTERERLLRAAQTNERRYRLLAENTGDVITRVKMDGSSKYISPAIQQLLGWTYEEMSGQSTDYVHPEDRHLVLGAIGKAVKTGEPTRLEHRAVHKNGETVWVECTFKALKDEHGQVDDVVVVIRDMTQRKTLEAEVLEAKETAEAAVQAKSEFLANMSHELRTPLTSVIGFSGLLQGSEHLPPEERIYVERIATASEALLGVINDILDYSKLEADAIEMDPEPFDTRALVDGAAAIIESQCSLKGLILRVVVAADTPARLTGDKGRLRQVMLNFLSNAVKFTARGEVTLTLDGRFDESGLWRMRAAVSDTGIGIPPEKISELFHRFTQADASTTRVYGGTGLGLAISRRLVELMGGEIGVDSTPGQGSTFWFEAPLTVAEAENDAVETRQGQTADSAIGGRVLMADDAAANRELVSAILRNLGLEVEAVADGAEAVHAVHSGAYDLVLMDVHMPVMDGLQATREIRRMQAGTGRRTPILALTANVQSEQVVRCLEAGMDGHLAKPIQIAELAAALTRWLSCDQPPAMAV*	mmseqs_cdd	nonviral_gene	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0010	persistent	direct	high	2411	1.0	GCA_002205555.1_00786
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	800904	801383	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	12216	12695	GCA_002205555_1_1_777	GCA_002205555_1_1_777	-	3385620	.	COG2983	Uncharacterized cysteine cluster protein YcgN, CxxCxxCC family [Function unknown]. 	MNSTSPKPFWETKTLAEMSPSEWESLCDGCGLCCVIRFEDEDTGQIIPTRVHCKLFDPDRCTCTDYAQRQAEVPDCVQLTPDNIERLKWMPLSCAYRRLHEGRTLAWWHPLVSGDPETVHAAGVSVRRQTVSELALKEPEDALEFEAPEWMGERGSANE*	mmseqs_cdd	nonviral_gene	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0011	persistent	direct	high	479	0.998	GCA_002205555.1_00787
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	801424	801762	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	12736	13074	GCA_002205555_1_1_778	GCA_002205555_1_1_778	-	3385620	.	COG2076	Multidrug transporter EmrE and related cation transporters [Defense mechanisms]. 	MSPATWLALLGAIGFEVMGTTLLQQSQQFTKPLPTAGLAVCYGIAFYLLTLALKQMPVGLAYAIWSGLGVVLISVIGLFLFKQKLDLPAIIGLALIIGGVVVINLFSKSVSH*	mmseqs_cdd	nonviral_gene	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0012	persistent	direct	high	338	0.997	GCA_002205555.1_00788
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	801759	802349	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	13071	13661	GCA_002205555_1_1_779	GCA_002205555_1_1_779	-	3385620	.	pfam17937	Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in CgmR (C. glutamicum multidrug-responsive transcriptional repressor), previously called CGL2612 protein. CgmR (CGL2612) from Corynebacterium glutamicum is a multidrug-resistance-related transcription factor belonging to the TetR family. It regulates expression of the immediately upstream gene cgmA (cgl2611) by binding to the operator cgmO in the cgmA promoter. The cgmA gene encodes a permease belonging to the major facilitator superfamily, a protein family composed of bacterial multidrug exporters, and the pair of CgmR and CgmA confers multidrug resistance on C. glutamicum.	MDAQPTRRTPEDTRRQIIDMAIEIAADQGAMGVTLDAVVARLPFSKGALLHHFPNKLALLEGVIDHLASEMTAAVLAEAARDPNPYGRNARAYLRTIVYEPATERDFSIGRAVLAACAIEPSLTPRWRAAIGALAVDDPDDPAGKDDALMLRLIADGLWMSDLFGTHEVSPEQRKALLSLLTPGSLLTDAYGESAE*	mmseqs_cdd	nonviral_gene	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0013	persistent	direct	high	590	0.998	GCA_002205555.1_00789
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	802455	804272	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	13767	15584	GCA_002205555_1_1_780	GCA_002205555_1_1_780	+	3385620	.	PDB:1W1W_D	Chromosome-Mainenance-protein	MAARPPLVALKDVRLQDGPRPLFDGVDMAMEPRSRAALVGRNGAGKSTLMKVVMGLIEPDSGDRSVQAGTRFAYVPQEPVITGETLADYAASGEAERWTAESWLETFGLNPNKSTQGLSGGEIRRAALAKAFAEEPDLLLLDEPTNHLDILAIELLENELIQARFALLVVSHDRAFLNRVTDTVHWLEGRRVRTLNKGFVEFDDWAAKVMEEEAESLRRLTKRIEAETYTFYRSITAQRTRNEGRARALQQMRLDRAERVKDLPRELNLGVDSGAVSGKLVADIKGVSKAFGDRTIFRNLTTRIIRGDRLAIVGPNGAGKTTLVKVLLGELAPDEGTVRMGANLEPLYLDQSREGLKSDMTLWDALTPGGGDSILVRGRSMHVAAYAKDFLFQEAQLKQPISTLSGGERNRLLLARALAQPANLLILDEPTNDLDMDTLEKLEELLESYDGTLILVSHDRDFVDRLATSTIALNGRGDVVETPGGWQDFLRQNPGFLAPPPTHADAAPSGARRVEKAEPSDRAPKKQAKLSYKDARRLEEVEKLMETLPVEIARQDAILADPDLYARDPAAFDRAMKAAEKARAELEAAELDWLELEEKKADLAG*	common_virus_hmm	common_virus	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0014	persistent	direct	high	1817	0.999	GCA_002205555.1_00790
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	804460	806007	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	15772	17319	GCA_002205555_1_1_781	GCA_002205555_1_1_781	+	3385620	.	COG2939	Carboxypeptidase C (cathepsin A)  [Amino acid transport and metabolism]. 	MKRLLVVAASALALAGPAMAQSGGQSGPQGAPRVDVAAAANRTEAAIPPPVMSETRHTGVFGGQRIAYRAIAGETYLKDKEGKPLAAMVSYSYIKEGPTDPNRPVTFLWNGGPGSGSLWLHMGAFGPKRVVVPSDARDDGAAPFPIIDNVDSLLDVTDIVFIDPIGTGFSRALGKTDPADYWGVTKDAKSIAEFIRLWLNEHGRWNAPKFIGGESYGTTRSAAVINELEGSYTDVSINGILLISSILDFSLAADAQGNELGFVTTLPSMAAAAWYHDKVPNKPATVEEFVAEARAWAIGPYASALLKGNALPADERATILQQLSRYTGISQTYLSNANLRLSPGRFYKELLRDRGLTIGRLDARYTGVDYDNAGDRPDNDPSFYGIDGAYTAAINAWAREGLKYSPDVVYSSIGGTRNWDWNLPTAGRGGAEYLNVAPYIGRALRENSGLRVWVGQGYYDFATPFFGAEYSLNRPGFPTDGRIEWHYYHSGHMMYVRDDDLKKLSNDIRTFIRAR*	mmseqs_cdd	nonviral_gene	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0015	persistent	direct	high	1547	0.999	GCA_002205555.1_00791
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	806595	807704	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	17907	19016	GCA_002205555_1_1_782	GCA_002205555_1_1_782	+	3385620	.	3IX1_B	N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding protein	MISGLKSRPATPRRLSKRGPSPYTLDVMTRARLHRRGLMAGALGLTALGVLSACGRRPAQTDESGRVRLRVAAGGPAGALHGGFYQAVATGAYERRGLNVEILAGPSGADIPALLAASAVELAVGRDSFLPLRLIADRAPVKAVAAFLQKDPVVLLAHPGQELEDLTVLRGRRILMEPGDQTGFWTWLRARFDLTPDQAQTGAPEDNLKAFREDRQSVLIARLTDGAPSLITREVGFQPLVLTPAEDGYPSYSGLVLAPNAFARDNAQALRDFIAASVEGWRDYVHGDGAKGDALIRRAHPDLPQRVLDAARASLRAQAMVDGGDAALYGLGAMTPERWQAFAEQTQDAYPAAPDWREAFTSQYLPSRG*	hhsuite_tools	hypothetical_protein	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0016	persistent	direct	high	1109	0.999	GCA_002205555.1_00792
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	807785	809179	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	19097	20491	GCA_002205555_1_1_783	GCA_002205555_1_1_783	+	3385620	.	PHA03378	EBNA-3B; Provisional	MPRILTIAVLLPALGASTAALAQAAPWAPPQAQTPYPPAAYDRQLSWPGRAQAHPSSQTAPTYPAAPADGFAPPQEAAYFAPPAAQTVARPAVIPHGGYPWRAGAPGYNRQLTPAQAWGAPSPIPAPPSSANALTPAPDFRPVTNHPDATWGPYVSPPAQQPAPAYTPPAPYQPTYQPAPWTRQPLSVPPQPVAPPPSGEAPAPYVPEAQPQPQPIERAPAPGHVPWTRVQPQAQPAPPPLVQRTPLPEPAPMPMPEPVRPMPTQPAPAQPIPVQPAPRAVAPQPAPQPAPEPVRQPAPVPERIPERVPAPPVQPAPQPTPAPAPIPTPAPVPADPAFDPMAPRRDAPIFQLQRNTPQPPAATPAPAPAQGQAPATPAAPTPPPASNDAPSQGSARYYSVHRQAGRQPDATPLPAPNYLDAMPVELNETPSSDDLAQPPEPPAVMRDAQGRLRAAPLADDPMLP*	mmseqs_cdd	common_virus	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0017	persistent	direct	high	1394	0.999	GCA_002205555.1_00793
GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote	cenote	CDS	809176	810306	GCA_002205555.1	CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555.1_CP021995.1	GCA_002205555.1|CP021995.1	GCA_002205555_1_1	GCA_002205555_1_1@C50	20488	21618	GCA_002205555_1_1_784	GCA_002205555_1_1_784	+	3385620	.	COG5330	Uncharacterized conserved protein, DUF2336 family [Function unknown]. 	MSDGAAPSPSVASPAETGSRLPALIALAQEESSPKRRALLRELTDCFFGAAERTETETALYGAVLSDLTDAMETAVRAELAERFAQSPDAPHQLIRRLANDEAETVAAPVLSASPVLTEADLIGVVRSRGQGHMRAVSRRAAVSEAVSDAIVERGDDETLGVLLGNEGAALSRAATETAVERARANPALHAVTVERASLPPDLLNDLYFDVEARLRQRILEQNARMDPALLESALAAGRTRVAAEDGALPADYAESLAYVEELRAANQLTPQVLARFLRSGGQTAFLIALSQLADVDFHTARQIIERRELDALAVICKAADLDRALFLTYAVVLLNTDDNAMGKARAYAGMYNELTREAALRTLRFWRARKAMQAA*	mmseqs_cdd	nonviral_gene	C50	21618	788689	810307	GCA_002205555.1|CP021995.1@region_788690_810307@tool_cenote_CDS_0018	persistent	direct	high	1130	0.999	GCA_002205555.1_00794