core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote	cenote	CDS	2	1609	GCA_002529125.1	NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125.1_NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125_1_40	GCA_002529125_1_40	3	1610	GCA_002529125_1_40_1	GCA_002529125_1_40_1	-	7459	.	PF10412.9	Type IV secretion-system coupling protein DNA-binding domain	MQNEDDLRGLAKTMDFMRAIAILFTVINGYWFCYEALHEWKITISVADTILMNFHRTTGLFSSILWTKLFAVVFLGLSCLGTKGVKEERITRRRIGVVLSAGAALYLLNGWILSLPVGIDLRAVCYLLTLATGFICLLMAGSWISRLLKHNLMDDVFNVENESFMQETRLMTNEYSVNLPTRFYYRKKWRDGWINVVNPFRASMVLGTPGSGKSYAIVNNYIKQQIEKGFAMYIYDYKFPDLSEIAYNHLLRHRKAYEVQPKFYVINFDDPRRSHRCNPINPDFMSDISDAYESAYTIMLNLNRTWIQKQGDFFVESPIILLAAIIWFLKIYENGRYCTFPHAIEFLNRPYAQIFPILTSYDELANYLSPFMDAWEGGAQDQLQGQIASAKIPLSRMISPALYWVMTGDDFSLDINNPKEPKILVVGNNPDRQNIYSAALGLYNSRIVKLINKKKQLKSSVIIDELPTIYFRGLDNLIATARSNKVAVCLGFQDFSQLTRDYGDKESKVIQNTVGNVFSGQVVGETAKTLSERFGK	hhsuite_tools	nonviral_gene	NaN	.	0	7459	GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote_CDS_0001	cloud	direct	moderate	918	0.571	GCA_002529125.1_01456
GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote	cenote	CDS	1611	2891	GCA_002529125.1	NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125.1_NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125_1_40	GCA_002529125_1_40	1612	2892	GCA_002529125_1_40_2	GCA_002529125_1_40_2	-	7459	.	PFAM:PF03432.13	Relaxase-Mobilisation-nuclease-protein	MVAEITAPKSMGKVLGYNFSKVTAGNASVILTSSMSVDANGETNFERALSDMEMRIPSGIRTKKTVFHCSLNPHPDDRLTTDQLQDIAREYMEKMGYGKQPYIVFKHNDIAREHIHIVSLRVDSYGKKLPYKFEARRSKRITDELERKYGLIPSGNRRSRHETHAENVLKTADVKQGDVRRQIAAVVRAVLKRYAFRSLGEMNLLLARYRIVAEEVRKEYKGKRYDGLVYAITDDAGEKRMIPLHAGKTGRGAGYAALARHFEKSKALIKEKAPMLRNAIVEVMQSSPDKERFSEEMKKRGIDVHIRPNEQGRIYGITFISDEAGIAANGSRLGKGYSAHVFNDYFLGGENPFLDYSRQEIRELPTVRSAPEMLPEAETGGDCYDEPVGTDELGIVVHGIDYKELAFQRKLRNRRHKQDITGKRRT*	common_virus_hmm	common_virus	NaN	.	0	7459	GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote_CDS_0002	shell	direct	high	1280	0.999	GCA_002529125.1_01457
GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote	cenote	CDS	2876	3277	GCA_002529125.1	NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125.1_NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125_1_40	GCA_002529125_1_40	2877	3278	GCA_002529125_1_40_3	GCA_002529125_1_40_3	-	7459	.	pfam19514	MobC-like protein. This family consists of several bacterial MobC-like, mobilisation proteins. MobC proteins belong to the group of relaxases. Together with MobA and MobB they bind to a single cis-active site of a mobilising plasmid, the origin of transfer (oriT) region.	MRNENRHGGSPSYRYYVRLNEKDNSRFLDLYEKSGIGNKSEFIRRRLFLTPFRVITHDKSAADYYTRLTHIHAQIRKVGVLYNQAVRSINTYHSVKTAAVLLQKLEQYTGELLALLEETNRLTVAFEERWLPR*	mmseqs_cdd	nonviral_gene	NaN	.	0	7459	GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote_CDS_0003	shell	direct	high	401	0.998	GCA_002529125.1_01458
GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote	cenote	CDS	3820	4713	GCA_002529125.1	NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125.1_NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125_1_40	GCA_002529125_1_40	3821	4714	GCA_002529125_1_40_4	GCA_002529125_1_40_4	+	7459	.	cd02042	partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	MYPFIGRQTDAAIQSYDHNITNPFIIQQMQKQKTLSERPVHIGFGSLKGGVGKSSIAEILASYLYYREGVNLFVVDCDFSQYSFANLRERDKETVQNGRPALLSRMKKHFEAFGKPAYRIIKSTSGQAMQDVQTFMEAHSEETFDLVLFDLPGRADDPDLVSLTVDMDYLISPIEPDRQSLVACMSYALAVRDLGVSITSGNIKQIYMLWNKIDRRVHPAVIEFYDREIEKEGLGLFDTRLPRSSRFKKEITTDNREVFRSTYLPPDKSLLEGSGIAALAGEIIEKCLLKPKRHAHD*	mmseqs_cdd	common_virus	NaN	.	0	7459	GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote_CDS_0004	shell	direct	high	893	0.999	GCA_002529125.1_01459
GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote	cenote	CDS	4700	5086	GCA_002529125.1	NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125.1_NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125_1_40	GCA_002529125_1_40	4701	5087	GCA_002529125_1_40_5	GCA_002529125_1_40_5	+	7459	.	pfam11888	Protein of unknown function (DUF3408). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.	MLTIEEQRQKLIAEQIQKMAGTDAPQVLPRSDVKNGENSSPADDPVSRQEITMDEYRSLFLSSRTVENRMTFSCDRELLECLRHILNDLRAKTTLSAYIGNILSEHIERHRELLSKAIEKNRRKTLIP*	mmseqs_cdd	nonviral_gene	NaN	.	0	7459	GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote_CDS_0005	shell	direct	high	386	0.997	GCA_002529125.1_01460
GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote	cenote	CDS	5091	5795	GCA_002529125.1	NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125.1_NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125_1_40	GCA_002529125_1_40	5092	5796	GCA_002529125_1_40_6	GCA_002529125_1_40_6	+	7459	.	PF13498.6	Domain of unknown function (DUF4122)	MKILLLTSWFLVLLLLYLRFQSKWNIRRSMREAEKKKESDTGNYSSDDDDILGKTRTEFPSRGMGGNAKEPDQNCKEKGDSFAVGKSSEPPEKEGVRAAENEDSEFYPSLPENETDEMLEEQEALSLLLEREIEVSTDSLTVKELQRLRTAAEEPEQLTETDKALVRETAGKLRGTEFLEKLRAHERLQRERGRELLGLLSHPPEEMAEKGRKAKKTDSAAPTATGAQDWMAYL*	hhsuite_tools	hypothetical_protein	NaN	.	0	7459	GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote_CDS_0006	shell	direct	high	704	0.999	GCA_002529125.1_01461
GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote	cenote	CDS	5985	6287	GCA_002529125.1	NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125.1_NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125_1_40	GCA_002529125_1_40	5986	6288	GCA_002529125_1_40_7	GCA_002529125_1_40_7	+	7459	.	CDD:PHA00025	major-coat-protein	MKTRKTMCIALLLTTLATGAFAQGNGMAGINEATKMVTSYFDPATKLIYAIGAVVGLIGGVKVYQKFSSGDPDTSKTAASWFGACIFLIVAATILRSFFL*	hallmark_hmm	common_virus	NaN	.	0	7459	GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote_CDS_0007	shell	direct	moderate	284	0.937	GCA_002529125.1_01462
GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote	cenote	CDS	6291	6626	GCA_002529125.1	NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125.1_NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125_1_40	GCA_002529125_1_40	6292	6627	GCA_002529125_1_40_8	GCA_002529125_1_40_8	+	7459	.	PF13571.6	Domain of unknown function (DUF4133)	MWEINKGIGRTVEFKGLKSQYLFIFAGGLLATFILVVICYMCGMNQYLCLGMGVSGATLVVWQTFAMNRKYGEHGLMKRGAARRHPRYLLSRRPVRRILSVRAVTTNQSTP*	hhsuite_tools	nonviral_gene	NaN	.	0	7459	GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote_CDS_0008	shell	direct	high	335	0.997	GCA_002529125.1_01463
GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote	cenote	CDS	6623	7456	GCA_002529125.1	NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125.1_NSLL01000045.1	GCA_002529125.1|NSLL01000045.1	GCA_002529125_1_40	GCA_002529125_1_40	6624	7457	GCA_002529125_1_40_9	GCA_002529125_1_40_9	+	7459	.	TIGR03783	Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4. [Cellular processes, DNA transformation]	MRNIRKKCELEEKFPLLAIENGCIVSKDADITVAFSLELPELFTETSPEYAAMHAAWHKAVKVLPVYSILHKQDWFIRESYRPELEKDDLSFLDRSYERHFNERPFLHHSVYLCLTKTTKQRMAQRSDFSTLCRGTLLPKEVRDREAVLKFLEAVDQFERIINDSGCMRLRRLSADEIAGTNDKRGLLDRYLSLRDDAAGTLEDLRLGADEVRIGDQILCLHTLSDTDDLPAAVATDGRYERLSTDRSDCRLSFAAPVGLMLPCNHIYNQYLFIDDSE	mmseqs_cdd	nonviral_gene	NaN	.	0	7459	GCA_002529125.1|NSLL01000045.1@region_1_7459@tool_cenote_CDS_0009	cloud	ambiguous	low	219	0.263	GCA_002529125.1_01464