core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1323875	1324774	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	1	900	GCA_002847685_2_1_1158	GCA_002847685_2_1_1158	-	2302060	.	PDB:4U7B_B	Mos-transposase	MQQEKANYSIKRMARLLKVSRSGYYKWAHTQQKRLSGEDDRAAFYDDVDRKIHRIWKDSDEVYGAPRITAELAERYHIALNRKTVAKRMCMMGIEGISPRAFVPVTTIQAKRKSTLPDLVKRMFDTGELNRVWMSDITYLRTGEGWLYLCAVRDGHSRRVLGWAMDSVQDTSLVERALRMAHTLRGDVPDGLVFHADRGAQFTSEQLWEVCRSLSIAQSVGRTGVCFDNAMAESFWSTLKTEFYDRKRWTTRDAARKAVAYWIEVVYNRRRRHSALGMVSPVDFENQIGLITSRKGIAA*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0001	shell	direct	high	899	0.999	GCA_002847685.2_01197
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1325133	1327154	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	1259	3280	GCA_002847685_2_1_1159	GCA_002847685_2_1_1159	-	2302060	.	PDB:4UX3_A	Chromosome-Mainenance-protein	MIQVQKLRIKEFRGIRDLDLDMGSKSFVVVGPNGSGKSGVVDAIDFALTGNVARLSGPGTGGISIAKHAPHVHQRDNPAAASVTLTFTHLASGQTGTLTRSVKTAGQFTLEPKTPEFVAAVEWAARHPELILTRREVIKYVNAEPGKRAQEVQALLKLDRIDEIRRLFNTARNKTNAAARSAGDAVKSAEDAVKRSLDITDLLSSEVTVAVNKRREVLGVGALPAVNLETDLSAGAKTEDSQSAFNRASAIRDIEAITRYMAEHEELDNAANDLGAALSDLDADPAILESLKHRQLVETGLPLVISNVCPLCDLEWPDVASLRQHLNDKLVRSETAAKLQQRIQTAAGKVTGQLRGVRFLIHAAQPHAVTLGQSALQTSLLDWSNDLAAFEAKLATIESIRDESERITTDPLAAPSPIADGLKTLQATIEAQPDQTATEAARTFLTVAQDRWTQLRQARAKATKATAAHKVANEVYEKYNSVADAALTTLYKTVETDFSNFYRQINSDDESSFKAGLSPTAGKLDLEVDFYGLGMFPPMAYHSEGHQDGMGVCLYLALIRQLLKSDFRLAVLDDVVTSVDANHRRQFCKLLKDVFPDVQFIMTTHDEVWARQMQSSGLIARRSLARFHGWTVDGGPFYGQGGDFWSQIETDLASDDVPGAAHKLRRNLEVTLV*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0002	cloud	direct	high	2021	1.0	GCA_002847685.2_01199
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1327824	1329323	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	3950	5449	GCA_002847685_2_1_1160	GCA_002847685_2_1_1160	+	2302060	.	7CUX_F	pseudo-dimeric architecture, CCCH-type zinc finger	MIVVDGRTDREKLIELLQAPEQTHLEFKSELDLMTTRDELNFVKDAVSMGNRPPGGYILVGVNDDGTLALSAGTIADRSRFDSARLGDTIRKYIEGEVHVISQIHEIDGHEVVMIYLPHHRDGLPVPMGKLGQFQSQNGKQVVVFREGDVLVREGAKNTPLRHAHWNDLLSFRDQQLREETRIHVDSLIANLATAMRAGGSKPVLAPLSVGMADDAFGEAVVSHLESANDLQLRKFLTQAAALVSNPVEHRAALAKITILAADAMYFERDDIAGKAVDSLFDAYAKLAQGEAAVRLDIITRVYVLGSLAVRLRQWTVVHNLVLRPYPTNGDAYIYSSWIRHGQVGASRADLFPKDRGGMMISAARVLMSEHQAMRPDIPDSAVPDSSDLTHNDALFNSLCQFDILYCLIVVAEGQHHGSAYPAASAMNQKRADPAFEVVASDPDARAAMFPTSDARKIAETMTQVFTSAERESFGFGGFWWSLPPRAQRFIDNQLGECT*	hhsuite_tools	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0003	cloud	direct	high	1499	0.999	GCA_002847685.2_01201
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1331317	1332093	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	7443	8219	GCA_002847685_2_1_1161	GCA_002847685_2_1_1161	-	2302060	.	PF12686.7	Protein of unknown function (DUF3800)	MLIAYLDESYNRDFYFIGAAIAADEQWSALDAEYEATRATTRAHHDIPAGAEFHGHQIMDGKGEWRALRGKHREAAGVYTAVLTANHAAGVQYIFRGVDVARLNARYSYPYPPHTVVLSQLLERINDYTRLNSPTAETIIVADEIATQDQHQAQFRVHQELGTGGYRTSQLEHISPPINFANARLSTGLQAVDMATYIHRRTATPGQTQHPKAQAVTDRLAQLIYSSTSERSIWYPQNNEGPTIVGPSAGNVPVAGPL*	hhsuite_tools	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0004	cloud	direct	high	776	0.999	GCA_002847685.2_01205
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1332245	1332424	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	8371	8550	GCA_002847685_2_1_1162	GCA_002847685_2_1_1162	-	2302060	.	.	hypothetical protein	MTKIGRGYRGCPVPAGQQIAAEFEPMVDAVVPVPFDPALKDGAKVDFTQLALATRRAYR*	.	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0005	cloud	direct	moderate	105	0.583	GCA_002847685.2_01206
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1332408	1332620	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	8534	8746	GCA_002847685_2_1_1163	GCA_002847685_2_1_1163	-	2302060	.	.	hypothetical protein	MKNSETLLGRLFRVAIVLVVYSIIVGLLIAGYAIVAGKAADEVLVNLWIAVLLMGLYVAVVAYREDDKDR*	.	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0006	cloud	direct	moderate	165	0.775	GCA_002847685.2_01207
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1332987	1333349	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	9113	9475	GCA_002847685_2_1_1164	GCA_002847685_2_1_1164	-	2302060	.	pfam01510	N-acetylmuramoyl-L-alanine amidase. This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.	MKNWATLEADENWLMNKHDTKGRNDRKINKIMINHNAGNLTIKSIWDVWQTPQASAHYQVDSQGRMDQLDWDRDTAWHAGDWGAGTTSIGIEHADIPFKPWRIPEVCLDNGAHLVAAIPR*	mmseqs_cdd	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0007	cloud	direct	high	362	0.997	GCA_002847685.2_01208
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1333349	1333819	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	9475	9945	GCA_002847685_2_1_1165	GCA_002847685_2_1_1165	-	2302060	.	PFAM:PF05105.11	Bacteriophage-holin	MSFKAIWVTIQTGLAGVGAVIGAFLGGLDGLVYALIAFVVVDYITGVLAAIAERRVSSAIGFRGISRKILIFTLIGLAHLLDVHVIGTPGALRTATIVFYLSNKGISLIENATRLGVPVPAHIRRALDLVTRDVTGKPDLEHHPNQTNTPAEKENL*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0008	cloud	direct	high	470	0.998	GCA_002847685.2_01209
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1333905	1334108	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	10031	10234	GCA_002847685_2_1_1166	GCA_002847685_2_1_1166	-	2302060	.	.	hypothetical protein	MSTSTITPVTSENAEEGIVEVIGSGPKALYAVSATPAAAQPSAAPTEHTGTINLYEPILDILTSPEL*	.	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0009	cloud	direct	high	203	0.995	GCA_002847685.2_01210
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1334105	1334545	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	10231	10671	GCA_002847685_2_1_1167	GCA_002847685_2_1_1167	-	2302060	.	PF07761.12	Protein of unknown function (DUF1617)	MRFLLPAHQIRPSIALLNDMPLTGGASRARSKLVRLLEQAYASFAEDEYELVRAHAVCDEDGQPVIDDDGTVTLADPDHATGFHAQHQALLSQRVEVEGPTYEHHGHDVVSILDALEMELSGSAAAAYDALYDAITESLAGGEQHP*	hhsuite_tools	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0010	cloud	direct	high	440	0.998	GCA_002847685.2_01211
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1334566	1335132	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	10692	11258	GCA_002847685_2_1_1168	GCA_002847685_2_1_1168	-	2302060	.	.	hypothetical protein	MRFYYGSHYIGWTGQQSKAGAADIRGISNSLEYTGDYISWSYKTTSTSTTYTTMLALDPRGKFYGRSGVHLGASLRTHGHDFYTQGNRIIIPQDCTLKGVGTYPGWAGSSGRAKVVFHTNDLYVISGNTFYNMTSVFNRVKDLMSRMNSLISLLNQGWVKNINSGASGNITWNYFSNTGRSSMSTTLR*	.	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0011	cloud	direct	high	566	0.998	GCA_002847685.2_01212
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1335235	1335570	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	11361	11696	GCA_002847685_2_1_1169	GCA_002847685_2_1_1169	+	2302060	.	.	hypothetical protein	MALVASLSAVIDHAPIRAALSTPVVILPVSSAPIFAEVIAASAIIAVLMNPLEIVILSEVIDPAAIRAADRVPVVIFDAGRLVIYASVIAALAIIAVAHPVIDPKRAGECF*	.	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0012	cloud	direct	moderate	266	0.792	GCA_002847685.2_01213
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1336225	1337226	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	12351	13352	GCA_002847685_2_1_1170	GCA_002847685_2_1_1170	-	2302060	.	PDB:4U7B_B	Mos-transposase	MTHRNAPMTIEGRRRLVCLVVDHGWPQRRVAERFQVSPATVSRWVSRHRAGTGLADRSSRPHYSPNRLSARTERRIIALRFNRRWGPHRIGYHLRVPRSTVGRVLARYRMPKLDCIDQATGLPVRRPAPHRYEVDQPGKLVHVDIKKLGRIPDGGGWRAHGRGSGQDRKVQSSRGKAARAGQPSSRGYRYLHHAVDDYSRLVYSEILNDEKKHTAAGFWKRANRFFTSIGVAIEAVMTDNGACYRSGDFQQALGDGVRHKRTRPRRPQTNGKVERFNRTLMNEWAYARPYASESAREDSYAAFLHDYNHHRAHTAIGGLSPADRVHNLTGKYT*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0013	cloud	direct	high	1001	0.999	GCA_002847685.2_01215
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1337660	1341931	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	13786	18057	GCA_002847685_2_1_1171	GCA_002847685_2_1_1171	+	2302060	.	.	hypothetical protein	MRIRESRLRPLSVFSVIAIVLSFVGMGLPALPKPLPASAEPNPAVCAPNTSYGVLENGQLRKINTGAAPGAANHGNVDLATSFPLTDDYLGYDPAYARKVQVNGLGVAPDGQGFYAFRGWSIGSYDQNGAWNNGIRNNFELFRYDANGNNPQRIQLTEDGQNKFSFFRLTQSTQNMDLIAGAVNPADGRYYFGGYHQAQNSAGGYNLYFNLRSIDPKDGRLRHVAQIPVESKNNRYSLNDANGDIVFDEAGNFHLLFAKAPSNGSSQVKLVSLSTDALPTENSGGLQQVQANSIASRMIKSGDGVANSLATDSDGSLIVATTTSVFTYDPTSFAFDRVATGINGTSGMINTDLASCNYPPTLEVRKNVVDRAAESDQFKLTADDQSESGVFATAETRGSNKGVQDDQIGPAIVRSGEEYLIREQMTSGSASTLDKYTTSVECRAHYRNGDSVQLSLAEKSAHEYGVTIPETTERGAPNVVCTYTNDPKDASFKVKKESGSAGAEAAGGQWSSEYLVTVENDGEVAGTSKPVTDVPSVPAGFTLEGVEVDGASVDLQDGSFVIAPEGVKLAAGEKKQFTVVLSGSYEAGKADWAAAGKCEVTGEGDPTKGFFNKVVMNEDSDGPENNDACNPVTKDASFKVKKESGSAGAEAAGGQWSSEYLVTVENDGEVAGTSKPVTDVPSVPAGFTLEGVEVDGASVDLQDGSFVIAPEGVKLAAGEKKQFTVVLSGSYEAGKADWAAAGKCEVTGEGDPTKGFFNKVVMNEDSDGPENNDACNPVTKDASFKVKKESGSAGAEAAGGQWSSEYLVTVENDGEVAGTSKPVTDVPSVPAGFTLEGVEVDGASVDLQDGSFVIAPEGVKLAAGEKKQFTVVLSGSYEAGKADWAAAGKCEVTGEGDPTKGFFNKVVMNEDSDGPENNDACNPVTKDASFKVKKESGSAGAEAAGGQWSSEYLVTVENDGEVAGTSKPVTDVPSVPAGFTLEGVEVDGASVDLQDGSFVIAPEGVKLAAGEKKQFTVVLSGSYEAGKADWAAAGKCEVTGEGDPTKGFFNKVVMNEDSDGPENNDACNPVTKDASFKVKKESGSAGAEAAGGQWSSEYLVTVENDGEVAGTSKPVTDVPSVPAGFTLEGVEVDGASVDLQDGSFVIAPEGVKLAAGEKKQFTVVLSGSYEAGKADWAAAGKCEVTGEGDPTKGFFNKVVMNEDSDGPENNDACNPVTKDASFKVKKESGSAGAEAAGGQWSSEYLVTVENDGEVAGTSKPVTDVPSVPAGFTLEGVEVDGASVDLQDGSFVIAPEGVKLAAGEKKQFTVVLSGSYEAGKADWAAAGKCEVTGEGDPTKGFFNKVVMNEDSDGPENNDACNPVEKPTPTPESEPSDTPSVPGDNGSSTAPLPRTGVEIAGALAAAAGLLAAGVLVVTRSRRKNN*	.	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0014	cloud	direct	high	4271	1.0	GCA_002847685.2_01216
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1341994	1342452	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	18120	18578	GCA_002847685_2_1_1172	GCA_002847685_2_1_1172	-	2302060	.	PF07902.11	gp58-like protein	MMASDLNLRVRPGEIISQINISPETILIDGKRIHITGQTNIDNATITTRLMNGLPTFYAGEESTAWGIETLGGGGDHPGLDKAHIRIFTHFLCHPPQRALIRQPSIVVEKNRNSSSTSGTPALRPVGIPTFSGSGMVGKRLWAVPLKRNRPQ*	hhsuite_tools	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0015	cloud	direct	high	458	0.998	GCA_002847685.2_01217
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1342829	1343686	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	18955	19812	GCA_002847685_2_1_1173	GCA_002847685_2_1_1173	-	2302060	.	PDB:3GS9_A	tail-protein	MNLAAAIMDQGSDNTFASRWAGELTRDNWHIHHAATRGQDRGVVIRDRKNLTGYTSTIDLTSVVSQIVPVGFDGITLPELYVDSPRVDHYAIPHIKVIRYPDIKAIADAENPRDDEVPLPQAHALLRQAAKTEFTTNHVDTPAASYTVSFADLASTTEYADLAELETVLLGDTVTVQHADLGVSLSARVVGYEYDPLRGAYVSVELGSVAGKFTSITRTITTAQTAAQMAADLAGVALASADGKSTNHYGPKQPAAARVGDTWFKDNGENIEIWIYQLTDTGEPG*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0016	cloud	direct	high	857	0.999	GCA_002847685.2_01218
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1343683	1344120	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	19809	20246	GCA_002847685_2_1_1174	GCA_002847685_2_1_1174	-	2302060	.	PDB:3GS9_A	tail-protein	MLTVHAPTATTFTAIGEGVLDPELIDAGVVKELGGAYQLTFTYPADGPPASQLAVEAISAAPVPGTTIRQGFRIHEVTTSLDGLLEVTAFHLFYDLAGNFIADTFVVNKTPRQPSISSLVPRPRSTGSPRPAPMRPPGRLRVWCG*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0017	cloud	direct	high	437	0.998	GCA_002847685.2_01219
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1344205	1344777	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	20331	20903	GCA_002847685_2_1_1175	GCA_002847685_2_1_1175	-	2302060	.	PDB:2X8K_A	Distal-Tail-Protein	MRGFTLDKTVSSTSLGLRLTGPVDLTVAERAADDIEVAGRAGTLTRLGGWHDTSITLPLAITGGLAAYHKATLALGQATTIHLSHQPGAFHKVKHASISPLRTDMSSWEFFEAHLVCEPFSYLDSGLTTYTLTASGQITLDSARLVAHVAVRVQTDAVTGTFPILTPGVNRVSLGSGISRVEITGNWRNP*	hallmark_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0018	cloud	direct	high	572	0.998	GCA_002847685.2_01220
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1344777	1345082	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	20903	21208	GCA_002847685_2_1_1176	GCA_002847685_2_1_1176	-	2302060	.	.	hypothetical protein	MSELTSGIDVPITTSLDPVDLTPTHLQKPPATTTSSVVGQEAGHAGEVAGIVDQTARTLLEAMDIKVVLNDGTLVGKLAPGINRQLARINSHHTVLTTGGA*	.	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0019	cloud	direct	high	305	0.997	GCA_002847685.2_01221
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1345079	1345477	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	21205	21603	GCA_002847685_2_1_1177	GCA_002847685_2_1_1177	-	2302060	.	COG5412	Phage-related protein  [Mobilome: prophages, transposons]. 	MTLEAALQLILGLAQGLLEAIPVLIETLPQIIIGIVGAVGQGVGQMAPAGSDLVRGLWNGIQSLADWLWDRVTSWCSDIWDGITGFFGINSPSKEMACVGDMLTRGLAGGIEDTGDRAIDAAQDVAAEPWRP*	mmseqs_cdd	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0020	cloud	direct	high	398	0.997	GCA_002847685.2_01222
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1345467	1345805	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	21593	21931	GCA_002847685_2_1_1178	GCA_002847685_2_1_1178	-	2302060	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MPMVNGWIDELTAAFEDGGAPALIGKLGEILQEALAFIAEQLPMVVETGMSILTALLEGIIEVLPSLLEAALQIITTLVTGIGEALPELIPAAVEMIVALVQGAGKCVADDP*	hallmark_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0021	cloud	direct	high	338	0.997	GCA_002847685.2_01223
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1345777	1347012	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	21903	23138	GCA_002847685_2_1_1179	GCA_002847685_2_1_1179	-	2302060	.	UniProtKB:E2ZNP7_9FIRM	tail-tape-measure-protein	MTFTVADSSFGLKIGLEGEREFKRAITDINREMRVLGSEMKLVVSQFGKNATSADALTARNQVLAKEIETQKSKIETLKAALENSAASFGENDSRTKNWQIQLNNAGAELNELEKELKANNDALGEFGDEADGAGDDAKDAAKDAGRLEDAVDDLGDEMDDTGDKTRVFGDVLKANLAAEAIIAGVKGIGKAIASIGRGMADALKDGVEYNARMEQYTTSFTTMLGDQAKAQQLVNDLKTQAAKTPFGMGDLAGSMQTLLAFGISLEDAKKHLMQIGDISQGDAQKMESLTLAFAQMSSTGKLTGQDLNQMINAGFNPLEEISRTTGKSIGELKEEMAKGAISADMVADAFASATEEGGRFHGGDGSPVENLHRPAIDHARRHRQPQGPARPRFDRRAGWHGHADGQRVDR*	hallmark_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0022	cloud	direct	high	1224	0.99	GCA_002847685.2_01224
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1347650	1348060	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	23776	24186	GCA_002847685_2_1_1180	GCA_002847685_2_1_1180	-	2302060	.	PFAM:PF12363.7	tail-protein	MTDTTSRDIAARSATVTIGGSEYELVLTTKAIRLIAQRYGGLDNLGAALETSEDLDQTLTEVIWLITLLANQSVQIHNLPHRGHLRPQSTEGEVELLTVPADIADSRGAIAEALQRGTRRDILTEPAPKVSPAADG*	phrogs_hmm	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0023	cloud	direct	high	410	0.998	GCA_002847685.2_01226
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1348073	1348372	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	24199	24498	GCA_002847685_2_1_1181	GCA_002847685_2_1_1181	-	2302060	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MRNEPRDYQRHATRFVEDHPQAAILLGMGLGKTVVTLTAIWNLLLDSFQARRVLIVASLRIARDPWPAEATEGAPKVKDEIITGWYQSVYEPAATSLGK*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0024	cloud	direct	high	299	0.997	GCA_002847685.2_01227
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1348353	1348631	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	24479	24757	GCA_002847685_2_1_1182	GCA_002847685_2_1_1182	-	2302060	.	PDB:4QBL_E	Nuclease	MNEHAIEQHLKQAVEAIGGLCWKFTSPGTAGVPDRICIHHGRIILVELKAPGRLPRPIQRRRIRQLQDHGVGAVVVDSIEGIKEVADAQRAA*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0025	cloud	direct	high	278	0.996	GCA_002847685.2_01228
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1348768	1349034	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	24894	25160	GCA_002847685_2_1_1183	GCA_002847685_2_1_1183	-	2302060	.	PFAM:PF04735.11	dsDNA-helicase	MVEASAAYREENNWFAQFLDANCDLDPGLSERAGDLYQSYRTWAMSTSGWARPMVGFNATVEHYGFTRKKTMHGMFVHGLALKNEFDN*	rep_hall_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0026	cloud	direct	moderate	264	0.989	GCA_002847685.2_01229
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1348976	1349743	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	25102	25869	GCA_002847685_2_1_1184	GCA_002847685_2_1_1184	-	2302060	.	PFAM:PF04735.11	dsDNA-helicase	MSRRDHDPTDLVTKLTTPDPGTDGAHLWQEALEVFFQGDAELIAYVQRIVGLAAIGQIFVEAFVIAYGDGRNGKSTFWNTIARKVGIYPGNMSADVLTIGGIRNVKPELAEAKGKRLIISAEAEEGVRMSTSVVKQLASTDQIYAEKKYKAPFAFTPSHTLTLYTNHLPRVGAMEAGIWRMLIVIPFEAKIEGTSDIKNYADYLYTQAGGAILTWIMEGARLIHAEDYHLKAPARVSGGGISGVSGREQLVRPVP*	rep_hall_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0027	cloud	direct	high	767	0.999	GCA_002847685.2_01230
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1349811	1349990	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	25937	26116	GCA_002847685_2_1_1185	GCA_002847685_2_1_1185	-	2302060	.	.	hypothetical protein	MLLASMSKAKAQAMFNTAQQEAFAAFEDVKTYAAYALKRGESRGMTNCLKEARPMLLTP*	.	hypothetical_protein	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0028	cloud	direct	high	180	1.0	GCA_002847685.2_01231
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1350415	1351215	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	26541	27341	GCA_002847685_2_1_1186	GCA_002847685_2_1_1186	-	2302060	.	pfam12089	Transmembrane domain of unknown function (DUF3566). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C-terminus of the proteins.	MSEENTVSSTSDDKTQPIAKQGGPEQSAESRTTALSEGVTSRIDAIKSGEGDAPKSTSRTKKNAQAPGAQEANVGGGQTSDHAAGPRGGQSYGGKYAGQNRGVHPGQPNGAPMGAQPAPRSRTTHQPAARPMPGSHDTAPVQDAPRQGSRRVKLTLSQLDPWSVMKLSFLVAIAFGIALVVAVALLWQVVNSIGLWDQVNQIASDLNSGKPLPFMEYLEFSKMLSYSVIVAVLNVILITALGTLFAFLYNIVASLLGGLKVTLTDN*	mmseqs_cdd	nonviral_gene	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0029	persistent	direct	moderate	783	0.978	GCA_002847685.2_01232
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1351220	1353850	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	27346	29976	GCA_002847685_2_1_1187	GCA_002847685_2_1_1187	-	2302060	.	PDB:4FM9_A	DNA-topoisomerase-2-alpha	MSDENIEDQGPKSAEDLEHAIPQGLTTTVDAIDEDEGDQIFQVDLNKEMQKSYLDYAMSVIVGRALPDVRDGLKPVHRRIVYGMYDGGYRPERSFSKCAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWNMRYPLILGQGNFGSAGDDGAAASRYTECKMSPLALELVRDINEDTVDMTGNYDNTVDEPVILPARFPNLLVNGSAGIAVGMATNIPPHNLREVASAVQWLLTNPEATKEELLEACIERIQGPDFPNGATITGRKGIEEAYRTGRGSITQRAVVKTEEINGRLALVVTELPYQVNPDNLARKIAELVKAGRLQGIADITDETSGKTGQRLVLTLKRDAVAKVVLNNLYKQTQLQENFSANMLAIVNDVPRTLSIDSFVREWTKHQIDVIVRRTRFRLRKAEEQIHIYRGYLKALDALDEVIATIRRSPDVDEARTALIALLDIDEIQANAILALQLRRLAALERQKITEEHDRLAALILEYEEILGSEQRQREIVSEELEAIVEKYGDERRTQIVPFDGDVSVEDLIPEEDMVVTITRGGWVKRTKTDEYRAQKRGGKGVRGASLRENDVVDHFFTTTTHKWLLFFTNFGRVYRIKGYELPEAPRDSKGQHIANLLEFQPDETIRSVLVIGGYDEAEYLVLATKHGIVKKTAMSAFDSNRSAGLIAINLREFEGPDGSLVTDELVAARAVNGDDHLLLVSKNGQSVRFPASDDVLRPMGRVTGGVTGMKFRGDDELLAMDVAHPDTFVFTVTDSGFAKRSSIDEYRVQGRGGLGIKVAKLPNDRGHLVGAAIVEETDEVFVLMEKGKVVRSSVAGVPSKGRDTMGVVFAKPDQKDSIILVNVFKESEPDDDEADEAGSDDAGDAVVSD*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0030	persistent	direct	high	2630	1.0	GCA_002847685.2_01233
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	CDS	1353922	1356099	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	30048	32225	GCA_002847685_2_1_1188	GCA_002847685_2_1_1188	-	2302060	.	PDB:4URL_A	DNA-topoisomerase-IV	MGPVPYTGVVVVYGPSILTPGLNRPGVDHQGDSFVSEAQENAPHYDASDITVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSVDEALAGYASEITVDVLEDGGVRVIDDGRGIPVAMHPTEKKPAVELVLTVLHAGGKFGGGGYAVSGGLHGVGSSVVNALSKRLEVEIKRDGYVWRQQYTHGVPNAPLEKGEETTETGTSVTFWADGDIFETTEYEFETLRKRFQQMAFLNKGLKITLTDHRPVEDPVDDDLPDLDNLDQDVDENDGINDAARPTDAGADTAEKPKTKSVTFLYEQGLEDFVKYINKQKRAEVIHPEIISFESEDTDHMISVEIAMQWTSAYSESVHTYANTINTHEGGTHEEGFRSALTGVINRYARANNLMKEKDANLTGEDIREGLTAVVSVKLGEPQFEGQTKTKLGNTIARTFVSKVMTDKLADWASAHPNEMKTIVTKAQSAAAAREAARKARDATRRKSPLETGGMPGKLRDCSSRNPAISEIFIVEGDSAGGSAVSGRDPKTQAILPIRGKILNVEKARLDRALDNAEVRSLITAFGTGIGEDFDPTKLRYHKIILMADADVDGQHICTLLLTLLFRYMRPLIELGHVFIAMPPLYRLKWTNAPHEYVFSDAERDRKLEEGRAAGKRIPKDNGIQRYKGLGEMDWRELQTTTMDRDLRTLKQVTMAEAADADAVFSVLMGDDVDARRRFIQENAKDVRFLDI*	common_virus_hmm	common_virus	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_CDS_0031	persistent	direct	moderate	2076	0.953	GCA_002847685.2_01234
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1816344	1817027	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	1	684	GCA_002847685_2_1_1569	GCA_002847685_2_1_1569	-	2302060	.	.	hypothetical protein	MSTPQPREALAIVDAASPLGDALVSEAYLALRNGGDVVALSAQPERLTHFSRAITYAAIPDDLEEFAARLHGATTVFLVLEAHADVEKLAASTIRAMRRAGIRRLIATAPLDALRCTVHGTREAEAPRRERSFAERATRAWATVGTPDPSLLAARRALELVRLSGLDTTLLLHPPILVAPGPASVQRTPAAYAPTVSADITAANAARAILASRYEDGIGREDVLSEG*	.	hypothetical_protein	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0001	persistent	direct	high	683	0.999	GCA_002847685.2_01633
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1817568	1818458	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	1225	2115	GCA_002847685_2_1_1570	GCA_002847685_2_1_1570	+	2302060	.	PDB:3EZ9_B	ParA;-dna-binding,-winged-hth-protein	MKTIAIVNTKGGCGRTTTAMYLATALSRSYPDLTGAVIDGDPQGTATDWALLAHEREMPLPFEVKSANHRNLQRTISGYDWVVIDTESGKGGAGFSDAALEVADVVILPTRPLGADTARTWLSEAVARHYAPAFVLITQSLTAASGDRRATFEVLSEARVSHFETYIPLHAEIGRAHGTVPGPDFHNYDKVLAELQEVMQWGEAPSEAASEPIADLSDVPELEIGATNKAISGGALEKRTQLSIVIDPDLRDRLAIAVDLSGASQREYVTAAIEHYIAHSGDADRIQAIYDIRKGN*	common_virus_hmm	common_virus	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0002	cloud	direct	high	890	0.999	GCA_002847685.2_01634
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1818677	1819144	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	2334	2801	GCA_002847685_2_1_1571	GCA_002847685_2_1_1571	+	2302060	.	PF14198.6	Transposon-encoded protein TnpV	MNRYATMLKDQWTQADPEMVASLEDPETYFSQLGEQAAEQVADLSLNLAGPDKSGEEYLEKVGRLNMARRQAEEIVLSELQPPSYLDADEPEEPEDFESRSPEEQEAWIREAYKHDPEGMEVQLRMLRDMHRYLELMAPPLSTGVVEEMDEDETL*	hhsuite_tools	hypothetical_protein	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0003	cloud	direct	high	467	0.998	GCA_002847685.2_01635
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1819151	1819858	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	2808	3515	GCA_002847685_2_1_1572	GCA_002847685_2_1_1572	-	2302060	.	.	hypothetical protein	MKRLNPQLSAVRDARLGLKLAELTFKRALIGAASGGESQRAIGHAASISQPAVAQHLANSGHIRPVPEGFSGADPLEICQRYYLGQITEDRLFDELTRWEYTPDPAPEHPLDEGASIPGTWIDVLVATNMEYISEEQYARLFQMMNDDSPHQGAQALRLRARHTGRSRKLGAAFLPGPPLRRGSPHHTAKNHRFKGQRPLPAMQRRYECNTLHPPGSPRGLRAFLTAPVRLARWV*	.	hypothetical_protein	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0004	cloud	direct	high	707	0.999	GCA_002847685.2_01636
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1820681	1820938	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	4338	4595	GCA_002847685_2_1_1573	GCA_002847685_2_1_1573	-	2302060	.	.	hypothetical protein	MGAMHHYLLAYDHANGQLVINEDFGTDVDTALDAYSALEKKYKDNLSMDIVLVGSDSIESVKVTHSTYFGRSALDRIRERGMTPA*	.	hypothetical_protein	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0005	cloud	direct	high	257	0.996	GCA_002847685.2_01637
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1820949	1821677	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	4606	5334	GCA_002847685_2_1_1574	GCA_002847685_2_1_1574	-	2302060	.	cd05399	Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydrolase domain (TGS). Some Rel-Spo proteins also have a C-terminal regulatory ACT domain. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition.Two of the three catalytic carboxylates are found in Rel-Spo enzymes, with the second carboxylate of the DXD motif missing. Evidence supports a single-cation synthetase mechanism.	MPDTPSKTAVRRAGSTVRKAHRNEPITAEQLQHAHTIIEQYRAAHQLPLNRISASLRQLVANEQVPAAVSQRIKRFPTIIDKLTRGGQSGVDDLSRMGDIGGCRIVTENRADLYKLQQRLLDLWSQNTHSPNNITKVRDYITQPRESGYRAIHLQIERDNLKFEVQLRDSRLHAWAETVEAFSGDLGLNYKQEGHSAVQELMKLLSEFDALDEAGRKPTPDQLDNMHRLYSEVQALYPEASD*	mmseqs_cdd	nonviral_gene	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0006	cloud	direct	high	728	0.999	GCA_002847685.2_01638
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1822344	1822973	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	6001	6630	GCA_002847685_2_1_1575	GCA_002847685_2_1_1575	-	2302060	.	PDB:4U7B_B	Mos-transposase	MMGIEGISPRAFVPVTTIQAKRKSTLPDLVKRMFDTGELNRVWMSDITYLRTGEGWLYLCAVRDGHSRRVLGWAMDSVQDTSLVERALRMAHTLRGDVPDGLVFHADRGAQFTSEQLWEVCRSLSIAQSVGRTGVCFDNAMAESFWSTLKTEFYDRKRWTTRDAARKAVAYWIEVVYNRRRRHSALGMVSPVDFENQIGLITSRKEIAA*	common_virus_hmm	common_virus	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0007	shell	direct	high	629	0.998	GCA_002847685.2_01640
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1823370	1824269	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	7027	7926	GCA_002847685_2_1_1576	GCA_002847685_2_1_1576	+	2302060	.	PDB:4U7B_B	Mos-transposase	MQQEKANYSIKRMARLLKVSRSGYYKWAHTQQKRLSGEDDRAAFYDDVDRKIHRIWKDSDEVYGAPRITAELAERYHIALNRKTVAKRMCMMGIEGISPRAFVPVTTIQAKRKSTLPDLVKRMFDTGELNRVWMSDITYLRTGEGWLYLCAVRDGHSRRVLGWAMDSVQDTSLVERALRMAHTLRGDVPDGLVFHADRGAQFTSEQLWEVCRSLSIAQSVGRTGVCFDNAMAESFWSTLKTEFYDRKRWTTRDAARKAVAYWIEVVYNRRRRHSALGMVSPVDFENQIGLITSRKGIAA*	common_virus_hmm	common_virus	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0008	shell	direct	high	899	0.999	GCA_002847685.2_01642
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1824286	1824570	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	7943	8227	GCA_002847685_2_1_1577	GCA_002847685_2_1_1577	-	2302060	.	PDB:4U7B_B	Mos-transposase	MQQEKANYSIKRMARLLKVSRSGYYKWAHTQQKRLSGEDDRAAFYDDVDRKIHRIWKDSDEVYGAPRITAELAERYHIALNRKTVWGYPQIVDT*	common_virus_hmm	common_virus	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0009	shell	direct	high	284	0.996	GCA_002847685.2_01643
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1824949	1825596	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	8606	9253	GCA_002847685_2_1_1578	GCA_002847685_2_1_1578	+	2302060	.	PDB:6Z6D_A	Large-Terminase	MKILSSQKRIIYKPTNSFYQVLSAEAYSKHGFNIAGVVFDELHTQPNRALYAVMTKGSCDARTQPLYFLITTAGTDTHSICYEQHQKARDILAGKKHDPTFYSVIYGAELDDDWTDESVWHKANPSLGGTVLVEKVRAACNSARQNPAEENSLRQLRLNQWAKQSVRWMPMHIWDAGADPVELEELEGRPCYGGLDFGRHDGYHRVRAGIPALRG*	hallmark_hmm	common_virus	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0010	cloud	direct	high	647	0.998	GCA_002847685.2_01645
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1825659	1826156	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	9316	9813	GCA_002847685_2_1_1579	GCA_002847685_2_1_1579	+	2302060	.	PDB:6Z6D_A	Large-Terminase	MARDHVPYDLWHSQGFLETTEGNVGHYVHIEHHIEALGERFDIREIAFDRWGAILMSQNLEGMGFTVVPFGQGFKDMSSLSKELMKLALEDRLAHGGHPVLSWMVDNIHVRTDPAGNIKPDKQKSTEKIDGVVATIMTLDRAIRKGSGQIGGSVYDERGLLLFEV*	hallmark_hmm	common_virus	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0011	cloud	direct	moderate	482	0.968	GCA_002847685.2_01646
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1826207	1827418	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	9864	11075	GCA_002847685_2_1_1580	GCA_002847685_2_1_1580	-	2302060	.	PFAM:PF05099.12	tellurite-resistance	MKPTDTSAEYVTSEEFVDDEFAPSEKEKNYVEREVTRIRQFVSDLSMDDLKSGDWFAKLLAFSLNQYVTQVDAEYFKKKYPNLPPDAVVDARIKMAARYAAIEGLLSSSAYTGAVAATIGSGGGASPLTLPAGGASFVIDLSYLSYLQLRMAYDISVLYGIPLDLNDPDYTWKLVRLAFGIKAGEAAGGLAMKGLPAFIRPVIKKVFSGSTLAALKSLPVVGKHLLRRNIVKFTIPGVTIPVTTAINRWTTMAAGTRAKILLRREAQIIEASQRIVAQAEQVEAVLSALWWIINVDKTVQDEELLLLHYLTVSAEQSTENGEEYRQYIEAFKSQIEVDEDDLWSRISEISEDGAPKLYQAAVIASAVDGKISKQELELLKLLAERLGLEHDEKLIGEIKRQWK*	phrogs_hmm	hypothetical_protein	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0012	cloud	direct	high	1211	0.999	GCA_002847685.2_01647
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1828407	1829909	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	12064	13566	GCA_002847685_2_1_1581	GCA_002847685_2_1_1581	+	2302060	.	COG0544	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]. 	MKTAVEKLSATRVKLNVEVPFEELKPAIDQAAKKIAKDVQLPGFRKGKVPTSLIEKRFGKPAIIQEAVNDALPGYYQQAAAEAELKPAGRPEVEVKEVPGLDGSEEGNLVFVIEQDVRPEIELPTFSDLEVEIEEPVVDDDAVEMRLTALRERFGTLKGVDRPAEDGDFVSIDMVAKIEDEQIDTVEGVSYNIGEGNMLDGLDEALIGLSAGETTTFTSKLAGGERAGEEAQITVTAQSVKVRELPEADDEFAELASEFDTLDELKADLKVQAEKDAEGNRVALARNALLEKLLEDIEIEVPEQLVKDEIEAHLENEGKTADDPHGEEIKDDTVKAIRAQFLLDAILETREVEVGQEDLMNFMSQMAAQYGMDPNTFLQAVAQGGQLEQIFGEVQRSKALDDALAEVTVKTEGGKVLDLGLSKGEESDDSSADDDAKAEGEKKAPAKKAAAKKPAAKKPAAKKPAAKKTAEKATAEKKPAAKKTTTKKAAEKSEDKGEDK*	mmseqs_cdd	nonviral_gene	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0013	persistent	direct	high	1502	0.999	GCA_002847685.2_01650
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1830009	1831256	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	13666	14913	GCA_002847685_2_1_1582	GCA_002847685_2_1_1582	+	2302060	.	cd11354	Alpha amylase catalytic domain found in bacterial cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). This group of CMDs is bacterial. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	MAWIDHALWWHVYPLGFTDAPIRAEDSRTGRGFDHLTSWLDYVQELGLNGIALGPIFESKTHGYDTLDYLKIDPRLGDDAAFDRFLAACKKRGIRVLLDGVFSHVSIDFEPLRRELENPSANASEREFDIDMEADGGPAPRVWEGHGELARFHHESAAARERIAHVMRSWLERGIDGWRLDAAYSVSTSFWSAIIPDLRRDFPEAFFFAEIIHGDYAEFVREAGVDSATEYELWKAIYSSIEQKNLFELEWTLGRHNTFLEHFVPYTFVGNHDTSRIASVLGADGALTAHAILYTLGGTPALYYGDEQAFRGIKEERLGGDDDVRQAFPDSPGDFFGEGPAMRDAIAGLIGVRRAEPWLVTARTEVLAIANERMTYRAHEHGGERFIDVDIALEDMPRATIRDAHGTVLWSQPQL*	mmseqs_cdd	nonviral_gene	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0014	persistent	direct	high	1247	0.999	GCA_002847685.2_01651
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1831360	1831977	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	15017	15634	GCA_002847685_2_1_1583	GCA_002847685_2_1_1583	+	2302060	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MTQHSVNAAGEMPLGLDDNVYQRLLRERIVWLGSDVRDDNANAICAKLLLLAAEDPDKDIFLYINSPGGSITAGMAIYDTMQYIKPDVVTVAMGMAASMGQFLLSSGTPGKRFATPHTRILMHQPLGGLGGTASEIKIQADLILSMKQQMAEITAEQTGKSVEQIIADGDRDHWFTAPEALEYGFIDRIVSAAGDVTGDGGMDEN*	common_virus_hmm	common_virus	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0015	persistent	direct	high	617	0.998	GCA_002847685.2_01652
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	CDS	1832004	1832660	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	15661	16317	GCA_002847685_2_1_1584	GCA_002847685_2_1_1584	+	2302060	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MTFEPSMKAGHMPSSRYVLPTYEERTAYGFKRQDPYAKLFEDRIIFLGVQVDDASADDVMAQLLVLESQDPDRDITLYINSPGGSFTALTAIYDTMQYIKPDVTTVCLGQAASAAAVLLAAGAPGKRLALPNARILIHQPAMGGQGGGQASDIEIQANEILRMREWLEDTLAHHSGRDREEVHRDIERDKILTAQGALEYGLIDQVLQRRSEQAQLGQ*	common_virus_hmm	common_virus	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_CDS_0016	persistent	direct	high	656	0.998	GCA_002847685.2_01653
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	tRNA	1330632	1330705	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	6758	6831	tRNA-Ile	tRNA-Ile	-	2302060	.	tRNAscan-SE score: 81.4	Ile	NA	tRNAscan-SE	.	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote	cenote	tRNA	1330404	1330476	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C89	6530	6602	tRNA-Ala	tRNA-Ala	-	2302060	.	tRNAscan-SE score: 79.0	Ala	NA	tRNAscan-SE	.	C89	32225	1323875	1356100	GCA_002847685.2|CP126968.1@region_1323876_1356100@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	tRNA	1828256	1828329	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	11913	11986	tRNA-Pro	tRNA-Pro	+	2302060	.	tRNAscan-SE score: 82.5	Pro	NA	tRNAscan-SE	.	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote	cenote	tRNA	1827984	1828057	GCA_002847685.2	CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685.2_CP126968.1	GCA_002847685.2|CP126968.1	GCA_002847685_2_1	GCA_002847685_2_1@C127	11641	11714	tRNA-Gly	tRNA-Gly	-	2302060	.	tRNAscan-SE score: 74.9	Gly	NA	tRNAscan-SE	.	C127	16317	1816344	1832661	GCA_002847685.2|CP126968.1@region_1816345_1832661@tool_cenote_tRNA_0001	.	.	.	.	.	.