core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	40897	41448	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	1	552	GCA_002860825_1_19_26	GCA_002860825_1_19_26	+	115118	.	cd01014	Nicotinamidase_ related amidohydrolases.  Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	MVHTALLVIDMQKAFDSPIWGERNNPQAEHQALRLLAYFRKHSLPVLHVQHISDNPQSQFHNKQNQVFKSGFEPVTSEPVFQKTVNSAFIGTNLETYLRKKQIGHLVLVGLTLPHCVSTTTRMAANLGFEVTLLADATASFTLSNKNGQAISPDTIHEINLLSLQDEFAQILTTEEFLTQIQV*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0001	shell	direct	high	551	0.998	GCA_002860825.1_01701
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	41518	42294	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	622	1398	GCA_002860825_1_19_27	GCA_002860825_1_19_27	-	115118	.	.	hypothetical protein	MFKMQCYNYITKRFLYISKTLQRSRKMKKKTYIKLMAATVLASTLLLGACGNKKETTQASSSVKTSQSSSSKAASSSKESKTQKPSSSASSEKAKTSTDQSAATATPSEATPAPEQRQGQGVSNQQAASQQTPAQAPSTQQASQVQSNQSNYDPTTDRKLQDKQAEQNKRYKGVLTMVDGDFSAAAGNWKGANGETITVSSGGQFTVESADGKKENYSIRGYSYTLDDGKYNAKIGGGKVIQITTGADGKVSSVALNQ*	.	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0002	persistent	direct	moderate	699	0.9	GCA_002860825.1_01702
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	42614	42724	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	1718	1828	GCA_002860825_1_19_28	GCA_002860825_1_19_28	+	115118	.	.	hypothetical protein	MIVDIALLYLHETYLKYKYKDLFIRIMSNSKKNSHP*	.	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0003	.	unmatched_CDS	none	0	0	.
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	42796	45228	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	1900	4332	GCA_002860825_1_19_29	GCA_002860825_1_19_29	-	115118	.	PDB:4M4W_K	Replicative-helicase,-DNA-primase	MNYSKALNECIESAYMVAGHFGARYLESWHLLIAMSNHSYSVAGATLNDYPYEMDRLEEVALELTETDYSKDETYTELPFSHRLRVLFDEAEYVASVVHAKVLGTEHVLYAILHDGNALATRILERAGFSYEDKKDQVKIAALRRNLEERAGWTREDLKALRQRHRTVADKQNSMANMMGMPQTPSGGLEDYTHDLTEQARSGKLEPVIGRDKEISRMIQILSRKTKNNPVLVGDAGVGKTALALGLAQRIASGDVPVEMAKMRVLELDLMNVVAGTRFRGDFEERMNNIIKDIEEDGQVILFIDELHTIMGSGSGIDSTLDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVTIEEPSVADSMAILQGLKATYEKHHRVQITDEAVETAVKMAHRYLTSRHLPDSAIDLLDEAAATVQNKAKHVKADDSGLSPADKALMDGKWKQAAQLIAKEEKVPVYKDLVTESDILTTLSRLSGIPVQKLTQTDAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFMFLGPTGVGKTELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQENMEKRMFEELKKAYRPEFINRIDEKVVFHSLSSDHMQEVVKIMVKPLVASLAEKGIDLKLQASALKLLANQGYDPEMGARPLRRTLQTEVEDKLAELLLKGELEAGSTLKIGVKAGQLKFDIA*	common_virus_hmm	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0004	persistent	direct	high	2432	1.0	GCA_002860825.1_01703
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	45230	45688	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	4334	4792	GCA_002860825_1_19_30	GCA_002860825_1_19_30	-	115118	.	COG4463	Transcriptional regulator CtsR [Transcription]. 	MRFKNTSDHIEAYIKAILDQSGIVELQRSQLADTFQVVPSQINYVIKTRFTESRGYLVESKRGGGGYIRIGRIEFSSHHEMLRELLYSIGERVSQEIYEDILQLLVEQELMTKQEMNLLVSVALDRVLGEEAPVLRANMLRQVIQEVDRKGK*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0005	persistent	direct	high	458	0.998	GCA_002860825.1_01704
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	46179	46514	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	5283	5618	GCA_002860825_1_19_31	GCA_002860825_1_19_31	-	115118	.	pfam09639	YjcQ protein. YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is expressed in bacteria and also in viruses. It appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown. However, it is thought to be a prophage head protein in viruses.	MAKNDYWVVVYKILNYYFQKMKHGEPADENEINSSVLEIPHLYLMDVYRNLFDDGFLTGACVTGDMSGDVYIENLSLVRITTKGIEYLEDNSKMKQAYKILKEIKDWIPGM*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0006	cloud	direct	high	335	0.997	GCA_002860825.1_01705
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	46768	47178	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	5872	6282	GCA_002860825_1_19_32	GCA_002860825_1_19_32	-	115118	.	PFAM:PF05263.10	transcriptional-regulator	MYELSNRDLDGIDIELGRYRTLANRIYLRRQELIHNKKHSTEDYTGGKGKTVSSPTEATIIRIEEDQTLRYLEGFKLVVDTLMENLIESDLVIFKMRYLEAGATWEDVAEKLNKTTRYINSRRKVIAKRFVELKGY*	phrogs_hmm	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0007	shell	direct	high	410	0.998	GCA_002860825.1_01706
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	47556	48104	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	6660	7208	GCA_002860825_1_19_33	GCA_002860825_1_19_33	-	115118	.	.	hypothetical protein	MDINQVFDTLDDLDNKKSKINSAREQLSKKRKSLLGNQAVSFENIDSFLSNNLESLEQLENMEKAINGLQEKFDSDFSEANAVIFEYIFKETKQRMETKKIYKQYRKKLRRILDAYDEIQELKKDVEEIHTGVVREISQRHSLSPYRTEVSPLTVLPFLTPDSSGWMNFSKEYRDIKVYLEK*	.	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0008	shell	direct	high	548	0.998	GCA_002860825.1_01707
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	48114	48974	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	7218	8078	GCA_002860825_1_19_34	GCA_002860825_1_19_34	-	115118	.	PFAM:PF06673.10	Major-Capsid-protein	MTTNLVKQKENLEAYIRSTGYNTRGMNIENNHVLIEKPILDSYENEHQRKELVDLVNVIETRTRGGKYEVTDFESDSLQEVSENSVERTEADKKKTISVDYLVKLFSGKLDFSQEQLDDGQYNLTDFLGKKIIKLKRRTRNREIGKILQTAKVQTATSMDDLKSIVSLINPERNVSMVVSQSLFSVLEKMKDTSGNYLLKVDKETGTSETFFVDNFLIVDDTTLGNKGDKKGFIGDLENFVTLFDRKKDTLSWVNANDYFGKRLILHTRFDVKKVEEDCGYSIQWN*	hallmark_hmm	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0009	shell	direct	high	860	0.999	GCA_002860825.1_01708
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	49000	49359	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	8104	8463	GCA_002860825_1_19_35	GCA_002860825_1_19_35	-	115118	.	PFAM:PF04883.11	putative-tail-component	MSLTSDLANEIAKTLEAYSEEVEEQIDLIAEEVTNEAVNELKRTSPKRSGKYAKNWRFKKNSKGSFVIYNADPTYRLTHLLEHGHVLRNGGRSKAIPHIKPVEEKIKEKFEQRIKNIGK*	hallmark_hmm	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0010	cloud	direct	high	359	0.997	GCA_002860825.1_01709
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	49407	49637	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	8511	8741	GCA_002860825_1_19_36	GCA_002860825_1_19_36	-	115118	.	.	hypothetical protein	MSGDTSLGYVVANKFSMDPDKRKKIFSQCKKEDDSLEQRKQEILEKYANKQDKSKSRKNDSKGSESHKRKAKSKEF*	.	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0011	shell	direct	high	230	0.996	GCA_002860825.1_01710
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	49727	49888	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	8831	8992	GCA_002860825_1_19_37	GCA_002860825_1_19_37	-	115118	.	PF13128.6	Protein of unknown function (DUF3954)	MNDDKMRFATEKGFVVYEKCGIIEIEKVPSFGEVTLFYSDGKFTHLVKKETKK*	hhsuite_tools	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0012	shell	direct	high	161	0.994	GCA_002860825.1_01711
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	49885	50730	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	8989	9834	GCA_002860825_1_19_38	GCA_002860825_1_19_38	-	115118	.	PDB:4M4W_K	Replicative-helicase	MKEQFKEFNNRKITDTVCDIHQVNYWEISVPVLGSSERKVQAFYPECVKGEIKQKEKDLLQQFEDRQAYFKTYDVLMRDSTIPNELKGATFDNFFVKTTEERQMLEFVKGQAQKYLGGMTGNTLISGSTGIGKSHLSLALAKEINESFREKHEPKSVLFVSLTEIIKQIKEGWAYGRNANLTEYKAVKKLVDVDFLIIDDLGAKNGTVTPKSDWEQDFLFDIINNRETTIFNTNLDSSELRTVYNARNSSRILKGLEGNTFKAFTIKDKRYTINTVRGEYQ*	rep_hall_hmm	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0013	shell	direct	high	845	0.999	GCA_002860825.1_01712
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	50742	51602	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	9846	10706	GCA_002860825_1_19_39	GCA_002860825_1_19_39	-	115118	.	PFAM:PF07261.10	Replication-initiation-and-membrane-attachment	MMAKTKIYFWLKVDKKFFDNLFIKRLKNMPGGYTMTVIYIRLMLESLEDDCILYYEGYFDSLVQELALKLDVSEDDINMTVAYFTKCGLIQIDDDGHATLSQAKAMVESETNWAKYKRDQRKNSQDLPKLENVQNRRTVSNSCPTEIEIEKESDKELYKEYILSGKPDFTFPNWLTPSMIDEVTKGRPEKYLIRIPLAYLNHTVGKNYKYLDKNLKPIIARFKEGYTLEDFKQVIDIKTAEWKDSPEFSKYLRPETLFGSKFDGYLNQKPKTIKGKSEDNFPDLPF*	rep_hall_hmm	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0014	shell	direct	high	858	0.997	GCA_002860825.1_01713
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	51586	51906	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	10690	11010	GCA_002860825_1_19_40	GCA_002860825_1_19_40	-	115118	.	PFAM:PF12964.6	HTH-DNA-binding-protein	MGDIFSLQRLSHGGTKMFEKMIEDLKSKILEAVERYLKSHEKAPQKRLDLISKVELKEELGIGDKTLTKWEGAGLPQYIPPIEDTRKAYYKVSDVLKFLGVDDGKD*	phrogs_hmm	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0015	shell	direct	moderate	273	0.85	GCA_002860825.1_01714
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	51936	52070	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	11040	11174	GCA_002860825_1_19_41	GCA_002860825_1_19_41	-	115118	.	.	hypothetical protein	MNELDLTNIQALIFIVVAIGLLIYLNHRDRKKKRSNRARKYTDD*	.	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0016	cloud	direct	high	134	0.993	GCA_002860825.1_01715
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	52063	52272	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	11167	11376	GCA_002860825_1_19_42	GCA_002860825_1_19_42	-	115118	.	.	hypothetical protein	MTVNTNDVLVDYEGLCCQLTDTLLVLEMASMEDSKQSSALLNTVIQAMNQLISEHTQQANDYRKGIKHE*	.	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0017	cloud	direct	high	209	0.995	GCA_002860825.1_01716
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	52595	52855	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	11699	11959	GCA_002860825_1_19_43	GCA_002860825_1_19_43	-	115118	.	.	hypothetical protein	MENDFKTVTNAKGLEIPKYPKDFKKLVEKDRQLAEYLCMNYENLDSEDLGAFLETVEQGISWILDLIESKDLLYKPKSGSNHAKRK*	.	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0018	shell	direct	high	260	0.996	GCA_002860825.1_01717
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	52867	53532	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	11971	12636	GCA_002860825_1_19_44	GCA_002860825_1_19_44	-	115118	.	pfam09669	Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	MIYLGTVLGGKHEQQEERSEPMELVYMDGRKEPYTLSSIVAECTGLQHHTITKTIRKHQVRFERFGKVGFKIQAMESGQNTKDYILNEQQATLLVTFLKNTEQVANFKTNLVKAFFEMRDELSKRYLQRELEKPKRKSLTEAIQTWEKAPKHAYSTLTNLLLKGATGKNKAQLMNERESKNGIDGLTSVELTNYQRLEDMAIAMISLNRGYSEIKELIFKV*	mmseqs_cdd	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0019	shell	direct	moderate	603	0.905	GCA_002860825.1_01718
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	53710	53898	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	12814	13002	GCA_002860825_1_19_45	GCA_002860825_1_19_45	-	115118	.	PFAM:PF10078.8	transcriptional-regulator	MLLTIEHAKKVRRKRGELQLGKVQLAKKLKITPPTLAKIEAGNYDAPKRIYESVIEWLLEDY*	phrogs_hmm	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0020	cloud	direct	high	188	0.995	GCA_002860825.1_01719
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	54076	54714	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	13180	13818	GCA_002860825_1_19_46	GCA_002860825_1_19_46	+	115118	.	PFAM:PF10078.8	transcriptional-regulator	MEKQTPKNNLKKLRIEKGFSQKEFYEDIIKKELGLNITLRTYQNWENPNNEIKSKPALLLAEYFGVNVGYLLGEDERRTTYLTSTLEKYSDNMESPVDFAGYGLLALTRGEKVRDTVIENLREITDYYGHRRFAKEEFKNWSQEKKDLMLKGMQDYADSNIGRFLAGLMTFPDKTKITIIDFLTLDNKEREAVSTIISSLADNPVLHKDYDD*	phrogs_hmm	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0021	cloud	direct	high	638	0.998	GCA_002860825.1_01720
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	54791	55387	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	13895	14491	GCA_002860825_1_19_47	GCA_002860825_1_19_47	+	115118	.	.	hypothetical protein	MGYRTKSFIRKTSAYRRLLMKKLLSTSAILLSATLLVACSNNQSTTKDSSEQPKTEQKNTTSTNTKAKVDNSKYDDLISEIKSKLDPESTGAISVKIQNNVIDSDSSEPHDTIMILLTGTAKDSAKETMDAINSNSATTNQQNAITVFRMSISEFAKKLPDDNTTLSLGYEKSADQYDLIAKSAKQKDFIPIGELIVN*	.	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0022	shell	direct	moderate	539	0.903	GCA_002860825.1_01721
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	55577	56341	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	14681	15445	GCA_002860825_1_19_48	GCA_002860825_1_19_48	+	115118	.	PFAM:PF02452.16	antitoxin-mazE-like	MNKENPYFEQTKQNYIEVEKLYKLGKAKHTSSKYRFLAPAVKRQSEQFLFEAKTQKRKYWKFSRGSLVFVEFGVNIGGELSNNHWAIVLDKVDSPYKKTLTVIPLTSKNQIDTVLIDEVIAEYPSILLDEYIEKLHKELFAYLKYLDSNNAVTEAALSDVYQAYTEQFSNEIIQPKIIDDDNLKRTQSEINDVIELTQYYKKYIKRSYAKCNNLQTISKDRILKKNRLDPIGKMKVSDNTLDKINEKLKELYLF*	phrogs_hmm	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0023	shell	direct	high	764	0.999	GCA_002860825.1_01722
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	56654	57820	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	15758	16924	GCA_002860825_1_19_49	GCA_002860825_1_19_49	+	115118	.	PDB:1Z19_B	Integrase	MKITQHTKKDGSAVYRSSIYLGIDSVTGKKVKTTISARTKKELKNKATQVKVEFEKNGSTRKQRSHITTYSELVDLFWQTYQYTVKTNTQIKIKGCLNNYLLPSFGTYKLDKLTPVIIQTQVNKWANEYNQDGTGYKEYNHLHALNKRILQYGVSIQALDNNPARDVVIPRKITRDKQEIKYFQDQELKNFLSYLDNLENTFVNFYDTVLYKTLLATGLRIRECLALEWSDIDLQNGTIDINKTLNILNQVNTPKTKSSYRVLDIDHKTVLMLRLYRARQAENGRNIGLTYEKVFSDSFDNYVNTRKVDYRLHKHLKNANCTDLGFHAFRHTHASILLNAGLPYKEIQTRLGHAKISVTMDTYSHLSKENQKRAVSFFETALEKIKSS*	common_virus_hmm	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0024	shell	direct	high	1166	0.999	GCA_002860825.1_01723
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	57981	58706	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	17085	17810	GCA_002860825_1_19_50	GCA_002860825_1_19_50	-	115118	.	COG1116	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. 	MTEIRLEHVSYAYGQERILEDINLQVTSGEVVSILGPSGVGKTTLFNLIAGILEVQSGRIVLNGEENPKGRVSYMLQKDLLLEHKTVLGNIILPLLIQKVNKAEAIARADEILATFQLTAVRDKYPHELSGGMRQRVALLRTYLFGHKLFLLDEAFSALDEMTKMELHAWYLEIHKQLQLTTLIITHSIEEALNLSDRIYILKNRPGQIVSEINLDWSEDEDKEVQKIAYKRQILAELGLE*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0025	persistent	direct	high	725	0.999	GCA_002860825.1_01724
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	58706	59713	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	17810	18817	GCA_002860825_1_19_51	GCA_002860825_1_19_51	-	115118	.	pfam09084	NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	MKKTWKVFLTVLTALVAVVLVACGQGTASKDNKEAELKKIDFILDWTPNTNHTGLYVAKEKGYFKEAGVDVDLKLPPEESSSDLVINGKAPFAVYFQDYMAKKLEKGAGITAVAAIVEHNTSGIISRKSDNVASPKDLVGKKYGTWNDPTELAMLKTLVESQGGDFEKVEKVPNNDSNSITPIANGVFDTAWIYYGWDGILAKSQGVDANFMYLKDYVKEFDYYSPVIIANNDYLKDNKEEARKVIQAIKKGYQYAMEHPEEAADILIKNAPELQEKRDFVIESQKYLSKEYASDKEKWGQFDAARWNAFYKWDKENGILKEDLTDKGFTNEFVK*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0026	persistent	direct	high	1007	0.999	GCA_002860825.1_01725
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	59752	60510	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	18856	19614	GCA_002860825_1_19_52	GCA_002860825_1_19_52	-	115118	.	COG0600	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]. 	MRNLKSILRRHISLLGFLGVLSIWQLAGFLKLLPKFILPTPLEILLSFVRDREFLWHHSWATLRVALLGLILGVLIACLMAVLMDSLTWLNDLIYPMMVVVQTIPTIAIAPILVLWLGYGILPKIVLIILTTTFPIIVSILDGFRHCDKDMLTLFNLMRAKPWQILWHFKIPVSLPYFYAGLRVSVSYAFITTVVSEWLGGFEGLGVYMIQSKKLFQYDTMFAIIILVSIISLLGMKLVDISEKYVIKWKRS*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0027	persistent	direct	high	758	0.999	GCA_002860825.1_01726
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	60473	60763	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	19577	19867	GCA_002860825_1_19_53	GCA_002860825_1_19_53	-	115118	.	COG0011	Uncharacterized conserved protein YqgV, UPF0045/DUF77 family [Function unknown]. 	MKASIALQVLPLSQGIDRIAVIDHVITYLQAQEVTMVVTPFETVLEGEFDELMRILKEALEVAGQEADNVFANVKINVGEILSIDEKLEKYTETTH*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0028	persistent	direct	high	290	0.997	GCA_002860825.1_01727
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	60817	61050	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	19921	20154	GCA_002860825_1_19_54	GCA_002860825_1_19_54	+	115118	.	.	hypothetical protein	MEKVQNRLSIVPYAGITQIRCGRSLTLPLRLYTDSHILYGHMIAQNKKNVKETAYRKEQEKFPTPIFYTRSPSLFTL*	.	hypothetical_protein	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0029	persistent	ambiguous	low	33	0.141	GCA_002860825.1_01729
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	61017	62135	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	20121	21239	GCA_002860825_1_19_55	GCA_002860825_1_19_55	-	115118	.	PDB:4OLS_C	Endolysin	MKILPFKVTETGFSLRKSVKKVVPFLAVGLMLAASDSVYAYSYSGGNGSIARGDDYPTYYKNGSQEIDKWRMYSRQCTSFAAFRLSSVNGFEIPGAYGNANEWGYRARREGYRVDSVPTIGSIAWSTAGGYGHVAWVSNVMGDNIEIEEYNYGYTGSYNKRIIKANTMTGFIHFKDLDGGNVVSSGKVFNSQPSSTGGTHYFKNKAAIKNQPLVSATSIAYYSPGESVHYDQVLEKDGYKWLSYISYSGSRRYIQLEEVVSSQNQTEGSSNDVLIVGWKKINGSWYHFKSNGSKSTGWLKDGSSWYYLKSSGEMQTGWLKENGLWYYLDSSGAMKTGWYQVYGKWYYSYSSGALAVNTTVDGYRVNSDGERV*	common_virus_hmm	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0030	persistent	direct	high	1118	0.999	GCA_002860825.1_01729
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	62224	62490	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	21328	21594	GCA_002860825_1_19_56	GCA_002860825_1_19_56	-	115118	.	3FB9_A	uncharacterized protein	MTDAFTDVAKMKKIKEEIKAHEGHVIEMTLENGRKRQKNRLGKLIEVYPSLFIVEFGNVEGDKQANVYVESFTYSDILTEKNLIHYLD*	hhsuite_tools	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0031	persistent	direct	high	266	0.996	GCA_002860825.1_01730
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	62487	63845	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	21591	22949	GCA_002860825_1_19_57	GCA_002860825_1_19_57	-	115118	.	PDB:3BGW_F	DNAB-Like-Replicative-Helicase	MAEVEELRVQPQDILAEQSVLGAIFIDESKLVFVREYIESRDFFKYAHRLIFQAMVDLSDRGDAIDATTVRTILDNQGDLQNIGGLSYLVEIVNSVPTSANAEYYAKIVAEKAMLRRLISKLTESVNQAYEASQPADEIIAQAEKGLIDVSENANRSGFKNIRDVLNINFGNLETRSQQTTDITGIATGYRDLDHMTTGLHEEELIILAARPAVGKTAFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLAAEGLVESHSIRTGQLTDEEWQKYTIAQGNLANASIYIDDTPGIRITEIRSRSRKLAQETGNLGLILIDYLQLITGTGRENRQQEVSEISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYERGGEEEEGIPNNKVEVIIEKNRSGARGTVELIFQKEYNKFSSISKREEIR*	rep_hall_hmm	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0032	persistent	direct	high	1358	0.999	GCA_002860825.1_01731
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	63889	64341	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	22993	23445	GCA_002860825_1_19_58	GCA_002860825_1_19_58	-	115118	.	COG0359	Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]. 	MKVIFLADVKGKGKKGEIKEVPTGYAQNFLIKKNLAKEATAQAVGELRGKQKSEEKAHAEMIAEAKAIKDQLEAEETVVEFVEKVGPDGRTFGSITNKKIAEELQKQFGIKIDKRHIQVQAPIRAVGLIDVPVKIYQDITGVINLRVKEG*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0033	persistent	direct	high	452	0.998	GCA_002860825.1_01732
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	64338	66332	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	23442	25436	GCA_002860825_1_19_59	GCA_002860825_1_19_59	-	115118	.	COG3887	c-di-AMP phosphodiesterase, consists of a GGDEF-like and DHH domains [Signal transduction mechanisms]. 	MGAKRFGMKKFYVSPIFPLILGIVAFGVLSVQLVFVTNTLVTLFLLLLILGSYSLLFIHQRDYYSKSEVEQIQYVNHQAEESLTTLLEQMPVGVIKLDLSSGEVEWFNPYAELILTNEVGEIDVALIQTIIKASVGNPGSYATLGETRYSVHMDKVSGVLYFFDVSGEYEATVELVTSRPVIGIVSVDNYDDLEDETSESDISHINSFVANFVSEFAGKHAMFSRRVSMDRFYLFTDYTVLEGLMNDRFSVIDAFREESKQRQLPLTLSMGFSYGDGNHDEIGKVALLNLNLAEVRGGDQVVVKENDETKNPVYFGGGSAASIKRTRTRTRAMMTAISDKIRSVDQVFVVGHKNLDMDALGSAVGMQLFASNVTENSYAIYDEEQMSSDIERAVSFLEKEGVTKLLSVKEAMGLVTNRSLLILVDHSKTALTLSKDFYDLFTQTIVIDHHRRDQDFPDNAVITYIESGASSASELVTELIQFQNSKKNRLSRMQASVLMAGMMLDTKNFTSRVTSRTFDVASYLRTRGSDSIAIQEMAATDFEEYREVNELILQGRKLGSDVLIAEATDSKCYDTVVISKAADAMLAMSGIEASFVLAKNTQGFISISARSRSKLNVQRIMEELGGGGHFNLAAAQIKDLTLSEAGEKLTEIVLNEIKEKEKEE*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0034	persistent	direct	moderate	1974	0.989	GCA_002860825.1_01733
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	66447	66995	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	25551	26099	GCA_002860825_1_19_60	GCA_002860825_1_19_60	-	115118	.	TIGR00741	ribosomal subunit interface protein. This model includes a small protein encoded by one of two genes, both downstream of the gene rpoN for sigma 54, whose deletion leads to increased expression from sigma 54-dependent promoters. It also includes the N-terminal half of a light-repressed protein LtrA of Synechococcus PCC 7002 and the N-terminal region (after removal of the transit peptide) of a larger plastid-specific ribosomal protein of spinach. The member of this family from E. coli is now recognized as a protein at the interace between ribosomal large and small subunits, with about 1/3 as many copies per cell as the number of ribosomes. [Protein synthesis, Translation factors]	MIKYSIRGENLEVTEAIRDYVVSKLEKIEKYFQAEQELDARVNLKVYREKTAKVEVTIPLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIERKNKNKVATSQLFTDALVEDTNVVQSRVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQTTNVIYRREDGEIGLLEVKES*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0035	persistent	direct	high	548	0.998	GCA_002860825.1_01734
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	67075	67740	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	26179	26844	GCA_002860825_1_19_61	GCA_002860825_1_19_61	-	115118	.	COG1040	Predicted amidophosphoribosyltransferases [General function prediction only]. 	MKCLLCEQTMKTVLTFSSLLLLKNDASCLCLDCDSTFERIGEEYCPNCMKIGLSTKCQDCQFWCKEGVEVSHRAIFTYNQAMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKRREERASFSKSRSERLGTELPFFIKSGVRIPKKILLIDDIYTTGTTINRVKKLLEEAGAEDVKTFSLVR*	mmseqs_cdd	nonviral_gene	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0036	persistent	direct	high	665	0.998	GCA_002860825.1_01735
GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote	cenote	CDS	67737	69035	GCA_002860825.1	PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825.1_PKID01000007.1	GCA_002860825.1|PKID01000007.1	GCA_002860825_1_19	GCA_002860825_1_19@C1	26841	28139	GCA_002860825_1_19_62	GCA_002860825_1_19_62	-	115118	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MKVNPNYLGRLFTENELTEEERQLAEKLPAMRKEKGKLFCQRCNSTILEEWYLPIGTYYCRECLLMKRVRSDQSLYYFPQEDFPKQDVLKWRGQLTPFQDKVSQGLLQAVDKQEPSLVHAVTGAGKTEMIYQVVAKVINAGGAVCLASPRIDVCLELYKRLQKDFACEIALLHGESEPYFRTPLVVATTHQLLKFYQAFDLLIVDEVDAFPYVDNPMLYHAVKNSVKENGLRIFLTATSTDELDRKVRIGELKRLSLPRRFHGNPLIIPKPVWLSDFNHCLEKSRLSPKLKSYIEKQRKTGYPLLIFASEIKKGEQLKEIIQEQFPNEKIGFVSSVTEDRLEQVQAFRDGELTILISTTILERGVTFPCVDVFVVEANHRLFTKSSLIQIGGRVGRSMDRPTGDLLFFHDGLNTSIKKAIKEIQQMNKEAGL*	common_virus_hmm	common_virus	C1	28139	40897	69036	GCA_002860825.1|PKID01000007.1@region_40898_69036@tool_cenote_CDS_0037	persistent	direct	high	1298	0.999	GCA_002860825.1_01736