core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	1203	1439	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	1204	1440	GCA_002860865_1_13_1	GCA_002860865_1_13_1	+	216651	.	NF038388	sigma(X)-activator ComW. The pneumococcal DNA-binding protein ComW, critical for natural transformation, interacts with the sigma factor that is a master regulator for competence, sigma(X).	MLQNIYDQMTDFYDSIEEEYATFFGNSWDWEHFHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLIMKQGFVAC*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0001	persistent	direct	high	236	0.996	GCA_002860865.1_01324
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	1628	2956	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	1629	2957	GCA_002860865_1_13_2	GCA_002860865_1_13_2	+	216651	.	PRK01117	adenylosuccinate synthetase; Provisional	MYVRKEEPEGSDKIMTSVVVVGTQWGDEGKGKITDFLSANAEVIARYQGGDNAGHTIVIDGKKFKLHLIPSGIFFPEKISVIGNGMVVNPKSLVKELSYLHEEGVTTDNLRISDRAHVILPYHIELDRLQEEAKGDNKIGTTIKGIGPAYMDKAARVGIRIADLLDKDIFRERLERNLAEKNRLFEKLYDSKAIDFDDIFEEYYEYGQQIKKYVTDTSVILNDALDNGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKIDKVVGVCKAYTSRVGDGPFPTELFDEVGERIREVGHEYGTTTGRPRRVGWFDSVVMRHSRRVSGITNLSLNSIDVLSGLDTVKICVAYDLDGQRIDYYPASLEQLKRCKPIYEELPGWSEDITGVRNLEDLPENARNYVRRVSELVGVRISTFSVGPGREQTNILESVWS*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0002	persistent	direct	high	1328	0.999	GCA_002860865.1_01325
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	3156	3623	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	3157	3624	GCA_002860865_1_13_3	GCA_002860865_1_13_3	+	216651	.	COG0590	tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]. 	MNYTVEEKEVFMREALREAEIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANLTEESWRLLDCTLFVTIEPCVMCSGAIGLARIPNVVYGAKNQKFGAAGSLYDILTDERLNHRVEVETGILEDECAAIMQDFFRNRRKK*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0003	persistent	direct	high	467	0.998	GCA_002860865.1_01327
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	3832	4974	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	3833	4975	GCA_002860865_1_13_4	GCA_002860865_1_13_4	-	216651	.	PDB:1Z19_B	Integrase	MWMEELPNGKYKFFERYKDPYTEKLKKVSVTMEKKTPQARNQAAILLQEKIKQKLGEKQHFVSDITFEKLYEEFEENWKHGVKNSTVYASKNVKKEILKQIEGDYLVRNIDRRLLQKVIDQLLQDGRSHNYVSKIKFKLNQIMKFAIRMNYIDTNEMLFVETPRKVITSDELRKKNTKYLDQKEFKLFIQNLKDEALCDYRITKYIRIAKVLFLTGMRYGELAALNYKEDIDFSKKTIHIKHTYDFRQKERTTPKTIKSDRVITAPQKVLDIIKKQIIENATNGFDTDFIFINTLGEPITNARVICALKRHGQKIGIEKNITTHTFRHSHISLLAELGIPLTAIMDRVGHSDSKTTLEIYSHVTQKMVSDISSKLEKIKL*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0004	cloud	direct	high	1142	0.999	GCA_002860865.1_01329
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	5120	5500	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	5121	5501	GCA_002860865_1_13_5	GCA_002860865_1_13_5	-	216651	.	PDB:3DTE_A	IrrE-protein	MTIEELVDSHGVTLAYFDNELWQRPGVYVKEISIIFINRELSENAKKRVIYHELGHLEHSTALYKNNHTRCENEANRHMIHKLLEEELALSDDHQSFNYIQFMQKHELRTVTDELMVIDEYYELIG*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0005	cloud	direct	high	380	0.997	GCA_002860865.1_01330
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	5521	6021	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	5522	6022	GCA_002860865_1_13_6	GCA_002860865_1_13_6	-	216651	.	PFAM:PF10779.8	hemolysin	MPDTQDNFKALPSNFVSLSSKRASLTTVPIQNRDIMESEMLSEENIMSQDTYSKSEIDLKLDKINSDTQHGFEKIDLKIDQLKQEMRSGFEKIDLKFEQVDLKFEQVDLKFDNFEKRIETMFLTQENKRLEEQAKSKKEFMYWFIGLLVSTLLGILAIIVTILTTK*	phrogs_hmm	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0006	cloud	direct	high	500	0.998	GCA_002860865.1_01331
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	6025	6447	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	6026	6448	GCA_002860865_1_13_7	GCA_002860865_1_13_7	-	216651	.	.	hypothetical protein	MTSIPMKKNPFREKMTAIRIVNPETSQFLGTITNFDMFPGSTSLVAFLDFFNLRPETDYILSLTAHFPNGTSYPVHATRINIARQEFVLLEDGFGMATGNFSFNFTIQNPSDFYFFFVLMDENGQEVDTAYSYHHFGKWG*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0007	cloud	direct	high	422	0.998	GCA_002860865.1_01332
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	6449	6802	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	6450	6803	GCA_002860865_1_13_8	GCA_002860865_1_13_8	-	216651	.	PDB:1PRA_A	Repressor-protein	MFSLFEKIKELCQKRGISINSLEETLGYSRNTIYSMKSKKPNAERLQEIADYFHVSTDYLLGRTDNPTIAKADTIAGYTSDDLRKMAENAKTFDGKPLTEEDIDAIQNIIEIYLRGR*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0008	cloud	direct	high	353	0.997	GCA_002860865.1_01333
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	7099	7290	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	7100	7291	GCA_002860865_1_13_9	GCA_002860865_1_13_9	+	216651	.	PFAM:PF10078.8	DNA-binding-protein	MPDIANGRERVNAFLKEKGIKKATLAVAYGFKRQEVTNILSGTTKGPRANSFILQVIEDYGIE*	phrogs_hmm	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0009	cloud	direct	high	191	0.995	GCA_002860865.1_01334
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	7364	7636	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	7365	7637	GCA_002860865_1_13_10	GCA_002860865_1_13_10	+	216651	.	.	hypothetical protein	MEAVEIVRIKDVIIEKVSANDEELEHIFGCSKRQAGDMRREMKKLPSQQKHLRNDGQLVTIKGFDAYLQYRGTQAWEKEMVKSKKMRSVG*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0010	cloud	direct	high	272	0.996	GCA_002860865.1_01335
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	7633	7806	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	7634	7807	GCA_002860865_1_13_11	GCA_002860865_1_13_11	+	216651	.	.	hypothetical protein	MKLLDRITKWFFNTTKIEVNTDWRLVALDLNRELIAAQEEKQILYQRIADLEKLLEV*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0011	cloud	direct	high	173	0.994	GCA_002860865.1_01336
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	7811	8068	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	7812	8069	GCA_002860865_1_13_12	GCA_002860865_1_13_12	+	216651	.	.	hypothetical protein	MEIKYIYNQTPLGWVWQLVIDGYEFFYPCGDFKALKKFVKSELEVLLDKKESGSNHGLAFHACGYNGQAQQEYISYWDKQGLSVF*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0012	cloud	direct	high	257	0.996	GCA_002860865.1_01337
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	8079	8357	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	8080	8358	GCA_002860865_1_13_13	GCA_002860865_1_13_13	+	216651	.	.	hypothetical protein	MTEPTLMSQLLGFATTFICFFVALMVIENNEQKRKRQVEEQEILDKAIIEVYQQGRNQFNNIARMNLRNSDKQFTYDVQPPVGLAKCVEEGV*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0013	cloud	direct	high	278	0.996	GCA_002860865.1_01338
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	8359	8589	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	8360	8590	GCA_002860865_1_13_14	GCA_002860865_1_13_14	+	216651	.	.	hypothetical protein	MVRNKLTDLTNTLFAQLETLDDRDLTADELKTELQRSKQMVAISGQILQAGQLALDAEKFKDKVGEDNAPIALLEG*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0014	cloud	direct	high	230	0.996	GCA_002860865.1_01339
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	8561	9325	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	8562	9326	GCA_002860865_1_13_15	GCA_002860865_1_13_15	+	216651	.	PFAM:PF05551.10	homing-endonuclease	MPQSLCWKDEYTKYMHEICPGRLTPEVTRLLNEKFGTNYNKSQIGGVRKRLGLLVGEAYQGKLLTKEQHDYLVSIQKNKISRDVANEMNRKFGLSLTEKQIKSYRRNNNLHSGLTGRFEKGQTPHNKGKKYPNMPKNSGQFKKGNRPPNYVPVGTINYTTDGYPKEKIGEPNQWVLKHRKVWEDHHGPIPKGYSIVFLDGDKTNYDISNLACLSKNEIARMNQNHLFTSNADLTKSGIGLTKLINKIREVEKNG*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0015	cloud	direct	high	764	0.999	GCA_002860865.1_01340
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	9318	9800	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	9319	9801	GCA_002860865_1_13_16	GCA_002860865_1_13_16	+	216651	.	PFAM:PF05565.10	resistance-protein	MASLYELTGQFLRIYQMDIDDETKADTLEAIDWQEQFEQKAEGYAHVIKNLEADVDMYKAEEESFKSKKQAAQKKLDYVKDNIMAAMNVTGQTEVKSGALIIKIAKNPESVKVNEDDLPKKYFTKKVTLAPDKKTLKELLKSGKKVKGAELIRTEKLVIK*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0016	cloud	direct	high	482	0.998	GCA_002860865.1_01341
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	9800	10159	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	9801	10160	GCA_002860865_1_13_17	GCA_002860865_1_13_17	+	216651	.	.	hypothetical protein	MELMNKTRVTDSLAVVIGPESIEVLVTEGFLFDVAIRFVKVDETNLDQGNEKPVFTPEYKLVTVAKYKEKPIFESEEDIRRFEKQAKEIKALFAFAKVNKQNWFNTALYPGVLTEKVGV*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0017	cloud	direct	high	359	0.997	GCA_002860865.1_01342
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	10159	10623	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	10160	10624	GCA_002860865_1_13_18	GCA_002860865_1_13_18	+	216651	.	1NU0_A	Structural genomics, hypothetical protein, yqgF	MKILAIDPSSNKIETSTTGIVLLDNAKLVDYWVVPYGAQNFKAWFKEIGRSLEFDIVVVEKFEVRDNDYSRDNSVVETIAAIELCYPDLVLQRNAGYQTDIPNDLLKALGLWNFDKSHHNDVRAAARLGLFYAQRNDIEEVIVDIGNRITQMAS*	hhsuite_tools	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0018	cloud	direct	high	464	0.998	GCA_002860865.1_01343
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	10583	11767	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	10584	11768	GCA_002860865_1_13_19	GCA_002860865_1_13_19	+	216651	.	PDB:1Z3I_X	Recombination-ATPase-helicase	MWTLAIELRKWQAEAVKRSDRNCPGIFLEAYGGRGKTICAFEIAKHKSAKKVLVINNRLAILNGWNSTYQNLGYDTDFELETMTDRRLQNRLASGESIECDVFIIDEWQNMSSDANVKAYRKVKRGYTVGLSATPIRKKGQNFYPLEKTFFGMADPNQRENWQLAHGKMKYSKFSYSKQEWDDFRDYENYVSNLPNFFRWEEVEAIEEAEENNGFEVVFEPIWCLTANPEELEQFRKLNIVGKDGKYAMAKQTFGRKTFERYLIQTGFEVDFPKLKAVNADTPMLLQLDLLLASRTEMLIVSKSKQIVEVIRERHPEIGIWTGDKKDSLEQTNVVATSQVLGVGVDGLQHKFKTIVVLDPVNPSDGDYDDYRQLLWRVTGSRQQHDVRVIEFYF*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0019	cloud	direct	high	1175	0.992	GCA_002860865.1_01344
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	11779	12093	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	11780	12094	GCA_002860865_1_13_20	GCA_002860865_1_13_20	+	216651	.	.	hypothetical protein	MKLSSDYIVMRNKQSGHFLNELKNKRSSLATQAGFVDDIRGALTMPYDCYLEQKTALKSLAKVHGMEIIRVKATFELTYPNGSDVSKIERENTKPGLLDLLRNL*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0020	cloud	direct	high	314	0.997	GCA_002860865.1_01345
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	12106	12816	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	12107	12817	GCA_002860865_1_13_21	GCA_002860865_1_13_21	+	216651	.	pfam04404	ERF superfamily. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.	MVTKQQSPIFVTLQSIQQSLVAPKGQYNSFGKYSYRSAEDILEALKPILQEHDAVLILQDGIVQIGDRYYVEATATLYAVGETIGTTAYAREDDSKKGMDGSQVTGAASSYARKYALNGLFMIDDNKDPDTDEYHNQNSQAGRTSQKPAQKTNSQQKQPANAPAKSNGAKTITGAQAKTIRTELKNMAEATGSPAATIGKWFIDKMGVDKPESIPADRLKEAQKIIADAKKARGIE*	mmseqs_cdd	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0021	cloud	direct	high	710	0.999	GCA_002860865.1_01346
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	12816	13106	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	12817	13107	GCA_002860865_1_13_22	GCA_002860865_1_13_22	+	216651	.	.	hypothetical protein	MGYTELGRKRPIELQIDYYDKILVYQHQGEIWGVCYKHGEIDCVYNYTKNDFFWLEISDMSLKEIVTKIIKPLKRNNHGLYSFHESTFSRILEVIK*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0022	cloud	direct	high	290	0.997	GCA_002860865.1_01347
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	13106	13498	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	13107	13499	GCA_002860865_1_13_23	GCA_002860865_1_13_23	+	216651	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNAVLVGRMTRDAELRYTPQNVAVATFTLAVNRTFKSQNGEREADFINCVMWRQQAENLANWAKKGSLIGVTGRIQTRSYDNQQGQRVYVTEVVAENFQMLESRNQQSSNDTFGNDNPMDIQDDDLPF*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0023	persistent	direct	high	392	0.997	GCA_002860865.1_01348
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	13510	14337	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	13511	14338	GCA_002860865_1_13_24	GCA_002860865_1_13_24	+	216651	.	PFAM:PF09250.10	Bifunctional-DNA-primase-polymerase	MGMKEHALAYQKKGFSVIPISPSNKQPMIKFADKPAMTAQEIEDFWSQYPDSNIAVRTDKFFVIDVDLHGKANGYESLANWEHLNLITPTLQAKTASGGKHIFYFKHPDVSMTQMIGFLPGVDIKAHPNNYVLVAPSKTSKGVYAWDKKKSKEGGTMVTASRSLVMAIKKEYNKKNSGSDLDNIYYQISKGAGKRNRTTELFEMVVLGFGDEGSRNDTLAKFVGGLLSRSVDPNCILTLAETANNNSVEPLGHRELSRTVESMIKKHMRGGGHNS*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0024	cloud	direct	high	827	0.999	GCA_002860865.1_01349
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	14321	15721	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	14322	15722	GCA_002860865_1_13_25	GCA_002860865_1_13_25	+	216651	.	PFAM:PF05272.10	Virulence-associated-protein-	MAIIADVTNISIKQFSRRKKKILNEEGEQIEIESIVADSPRNVLLAMKSDNKLNDFLRHNEFTGEHEIVEDVKLDAIQLRKGQLPSAFESYLSVYLENHFKTVFKAGALRDGIEAFFAEKTYNPVKEYMENAYESWDHKERLAQVFQTWLGAEDSIYVQKIAEMFFVGAVSKVFNPWVKFDYTLDLVGGQGAGKTTFLQKIAVGWYTDSAKDFMDKDNYEIMLKSLIVNDDEMVASRKTTFDELKAFVTKTELSFRRSYGRRAEKFPKNFVIARTSNKIEYLGDKTGERRFLPVLVDAGQQFVKPFDMTDHDVLQLWGEAVAIYKKGFILTFDDEFENELAVYKERFTYKDEAESQVYDYLEMLVPEEWEDFSVTQQHQYTWCYFNDGSYRNESGLIYEGVKLQSSVSAKQILKNVFDIDSARGEKIARKIKLIMDNNQDWEYKIKKVKGKTLRAYFRKNIQTEVM*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0025	cloud	direct	high	1400	0.999	GCA_002860865.1_01350
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	16101	16253	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	16102	16254	GCA_002860865_1_13_26	GCA_002860865_1_13_26	+	216651	.	.	hypothetical protein	MSYTVTLYFDNMVDKTHFFKKVGDATKCKAQLESKYRGERMYKVKMEEME*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0026	cloud	direct	high	152	0.993	GCA_002860865.1_01351
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	16253	16591	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	16254	16592	GCA_002860865_1_13_27	GCA_002860865_1_13_27	+	216651	.	.	hypothetical protein	MSYDLEILAKIESGDYICIAEPRYSSPTYNLGKMFRIAMDWDFDQDTTYNIADILDNIQRGISELERYPEKYVQYEPENRWGTVSGALEVLKSLKECILEQDIDMKYLYMRW*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0027	shell	direct	high	338	0.997	GCA_002860865.1_01352
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	16593	16757	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	16594	16758	GCA_002860865_1_13_28	GCA_002860865_1_13_28	+	216651	.	.	hypothetical protein	MERPERHPSKYFIPELIENEDIIFNKDSNYHKQKKKEKKNPIFKINKSKNRWAL*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0028	cloud	direct	high	164	0.994	GCA_002860865.1_01353
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	16770	17057	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	16771	17058	GCA_002860865_1_13_29	GCA_002860865_1_13_29	+	216651	.	.	hypothetical protein	MTRKNYIIFIRHLKKIKDLADFYEYIADSKVCGSAIYLFLIICSPFIALLFPIAYIEHCFYKKRFIRQCVEYDWCSKEYLEEVVDIKKDDIGEVE*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0029	cloud	direct	high	287	0.997	GCA_002860865.1_01354
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	17057	17395	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	17058	17396	GCA_002860865_1_13_30	GCA_002860865_1_13_30	+	216651	.	.	hypothetical protein	MSYDLEILAKIESGDYIRIAEPRYSSPTYNLGKMFRIAMDWDFDQDTTYNIADILDNIQRGISELERYPEKYTQYEPENKWGTVSGALEVLKSLKECILEQDIDTKYLYMRW*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0030	shell	direct	high	338	0.997	GCA_002860865.1_01355
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	17397	17546	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	17398	17547	GCA_002860865_1_13_31	GCA_002860865_1_13_31	+	216651	.	.	hypothetical protein	MKRPNRYPYTRGQWVEETADYYTYADGIYFTSHVLKNRLTREIKSKEMK*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0031	cloud	direct	high	149	0.993	GCA_002860865.1_01356
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	17546	17806	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	17547	17807	GCA_002860865_1_13_32	GCA_002860865_1_13_32	+	216651	.	.	hypothetical protein	MIIKNYKYDYSSGRICYTIDVDGYESAVEHTKTDQGSVQRNDIDDFLSKVEEYDFQEAEMIETFVDFQNDLLLYGIGFELRNEVTD*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0032	cloud	direct	high	260	0.996	GCA_002860865.1_01357
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	17803	18063	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	17804	18064	GCA_002860865_1_13_33	GCA_002860865_1_13_33	+	216651	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFISIWILLSAGLNIWQMDRIRDLEEKKPMVIYKADNAGGEIFGKVVEKGRHGKLYTLTIRDYGVFVVTKDVYEKVKVGDEVML*	mmseqs_cdd	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0033	shell	direct	high	260	0.996	GCA_002860865.1_01358
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	18060	18248	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	18061	18249	GCA_002860865_1_13_34	GCA_002860865_1_13_34	+	216651	.	.	hypothetical protein	MKVRFNGKYNFFLTQFVHFIVLDYLWKILEIIILGGVRGNLADSIMLSLICVYIAWILDKEE*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0034	cloud	direct	high	188	0.995	GCA_002860865.1_01359
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	18254	18745	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	18255	18746	GCA_002860865_1_13_35	GCA_002860865_1_13_35	+	216651	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MTTLDKVKQWFIDRDLENGGRLDKQSLKLSEEFGELCAGYLKKNEKLTKDSIGDCAVVIVGLALLIKADVQEIFEEVSFIENEDVMDSFKWLSAEISSFQLRQDLIGKKMCRYNLAHSIGYLKSISKSLGYSFEECFELAYQEIKDRKGRWIDGSFVKEEDLG*	phrogs_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0035	cloud	direct	high	491	0.998	GCA_002860865.1_01360
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	18742	19158	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	18743	19159	GCA_002860865_1_13_36	GCA_002860865_1_13_36	+	216651	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPRYRAWIKTENCFADYIESIRFYINEIDLCWGGICESDCFDFKDVILMQSTGLKDKNGKEIFEGDIVKTTRFFGRADEVGGFYEYDKEIIGVVKQLEGAWVIDTGSEAVNLWTEIEENEVIGNVYEQPEYLKKKGN*	mmseqs_cdd	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0036	cloud	direct	high	416	0.998	GCA_002860865.1_01361
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	19160	19582	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	19161	19583	GCA_002860865_1_13_37	GCA_002860865_1_13_37	+	216651	.	.	hypothetical protein	MTETIKLPNYYEPDWGNARYGSLEELKELLLYKRIVKWDKDFLLLEDGTEVTIEMSESDCCASAGGEFQDVSLDAVITDVEIGEPKEIPDHWGTGYKNKVTIFHNQNPVAIANCEAEHNGYYYSVGSLVIGDIHFPVVKA*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0037	cloud	direct	high	422	0.998	GCA_002860865.1_01362
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	19593	19772	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	19594	19773	GCA_002860865_1_13_38	GCA_002860865_1_13_38	+	216651	.	PF09889.9	Uncharacterized protein containing a Zn-ribbon (DUF2116)	MNKRQRKKKILNGLNKEERYRRTHCPVCDSEIGVFDEYFNTYGFCSEYCGYEYYGISRL*	hhsuite_tools	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0038	cloud	direct	high	179	0.994	GCA_002860865.1_01363
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	19794	20108	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	19795	20109	GCA_002860865_1_13_39	GCA_002860865_1_13_39	+	216651	.	.	hypothetical protein	MTLFDEVQQLSSESHSKWFERYFEKYNLEQKLKTSAQKGYTGYLIDVWSVRDEYLRNRLGDERTLEALRELLGAGFTVKYKLYLSKNFFTGQDFVSNKKIHITW*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0039	cloud	direct	high	314	0.997	GCA_002860865.1_01364
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	20182	20616	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	20183	20617	GCA_002860865_1_13_40	GCA_002860865_1_13_40	+	216651	.	pfam07374	Protein of unknown function (DUF1492). This family consists of several hypothetical, highly conserved Streptococcal and related phage proteins of around 100 residues in length. The function of this family is unknown. It appears to be distantly related to pfam08281.	MNKAKELLKELQDLDMDIQSRIDEINELEAGLLSSPKWTDVKAQGGQTRKVDDVYTQLVVMKEAIEQDTKEVINRKLELGRLINKLKNPKYRTVLRMTYINKMYVDDICDSMGGMSSPTYYRLKKQAVNELDVILTELIVNDSK*	mmseqs_cdd	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0040	cloud	direct	high	434	0.998	GCA_002860865.1_01365
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	21129	21515	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	21130	21516	GCA_002860865_1_13_41	GCA_002860865_1_13_41	+	216651	.	PDB:5H0M_A	HNH-endonuclease	MGHTNVWLFVIFEREGMMKPQKLTIFGGRRTSVDYDQRNNEYTEYNRTRWKYDKDVKRFYNSSIWKRTSKQVLLESDYVCAMCGDEATMTDHIISVKQDWSRRLDRNNLQASCKKCNDKKAIKERYSF*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0041	cloud	direct	high	386	0.997	GCA_002860865.1_01368
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	21754	22221	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	21755	22222	GCA_002860865_1_13_42	GCA_002860865_1_13_42	+	216651	.	PFAM:PF05119.11	Small-Terminase	MGRKMKVVESNKKHMTKEEKIARKSIQEKASDGLDALQLTPPKHFDPIAKAEYKRVINDLRKLPLRNLDRAVLESYCTWYAVYKEISRGLQKKGYVYENEKGSVVPNKMLYTLERATTNLMKAASQLGLTVDSRMKLYVPQVEEKKESIFDKFGS*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0042	cloud	direct	high	467	0.998	GCA_002860865.1_01369
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	22233	23948	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	22234	23949	GCA_002860865_1_13_43	GCA_002860865_1_13_43	+	216651	.	PFAM:PF03354.14	Large-Terminase	MEDVAYQYASRVVSGEIIASKKVIKACKRHLRDLKRMDDEDFPYIYLPDKAKNPIDFIEMLPDVKTGKPYPLADFQKFILSSLYGWRRKSDTSIRRFKKALISLARKNGKTILVAGIALYEFLFGRNPSMSRQLFCTANDRSQARIAYDMIRKQLDALRAQDEDIRKATKIVRDELRNLNDESYVRALSRDTGAVDGFEPYVGILDEFAASKTNEMIELLESGQGQLDNPLILIISTAGMNLNAPMHTIEYPYIEKILDGDVIDDSYFAFIAEQDNEEEIADEANWIKSNPILEVEALHEKMMDYLRKRRKTSLETGTVNEVLIKNFNMWRQSSEESYMDKESWSKAKIDKPDTRKRRVWIGVDVGRSSDLFSISPMVMMDDYWYADSFSFVATKYGLIAKEKRDGVSYTNLERMGECEITTLESGVIDDERVLEKIEEMVYENDWELQGIYFDPYQFGSLLTMIEKRHPEWPLTQIPQTTMVLNMPTKQFRDDIRLGKIKHSGNQLLTMAVNNAYTRVDNNGMRIDKNKNSNKIDPLDALLDAYAACYLEPFDGTGYWTNEKILKGDSLF*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0043	cloud	direct	high	1715	0.999	GCA_002860865.1_01370
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	24134	24730	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	24135	24731	GCA_002860865_1_13_44	GCA_002860865_1_13_44	+	216651	.	3K2Y_B	uncharacterized protein lp_0118	MPKSYKTQLLERISDYRNQIEEIDQEVDQLVKESKKGFLAFLFGARDYSFRIQPLLNKKSEIQQWLGKLEEELEKDYIYGRRLFVKGTKYREEGEVPFRKLAGIPEDEDDMFYHEIVKTKNFKLVPEPTNQADENAIKVMVEGYFVGYIDRRYNKGLKKYVNNDDYIIEGEVIGTGGSFDVDTSYPIRYDIELRIRKK*	hhsuite_tools	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0044	cloud	direct	high	596	0.998	GCA_002860865.1_01371
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	24790	26019	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	24791	26020	GCA_002860865_1_13_45	GCA_002860865_1_13_45	+	216651	.	CDD:TIGR01537	Portal-protein	MAFFQSLSSSKLSYDDYISSVVSANSSPEYTGIKALKNSDVLTAVSIIAGDVARFPLLKKDLMGNIEIDENMNYLLNVKSTGNASARQWKFAMTVNTILTGNSFSRILRNPATGKAMEFQFFRPSETTVEETNDHELIYTFRDQLSGKEVRCHSDDVIHWKFFSHDTILGRSPLLSLGDEISLQNGGINTLIKFFRDGFSSGIIKLKGAQLNGEARQKARMDFEKMREGSTGGSPLVFDDTQEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSFKLGVNSPNQSVAQLTEDYVTNDLPFYFDAITSELGLKVLDDDERRKYRVEFDTRSVTGRNVEELVKLVNNQILTPNQALIELGKERSTDPNMDRYLSSLNYVFLDKKEEYQAMKGGETRNAEENQDEGSADLE*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0045	cloud	direct	high	1229	0.999	GCA_002860865.1_01372
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	25976	26650	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	25977	26651	GCA_002860865_1_13_46	GCA_002860865_1_13_46	+	216651	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MPKRIKMKGPLISNNQQEVYDYFGMEAVSAKSVVDAFPEDGSDIVLEVNSNGGLVTVGSEIYTSLRSYPGKVTVEVTGMAASSASVAIMGADSVRISPTAQIMIHKALLPWVSGNSDDLDKASNALKASDQAIVNAYVSKTGLEESVIIDMMKNETFMSAEEAVEKGFADEVMNFEDREAVASFGTGMLPQAVIDDFFANKSNRKNEIEAMKLELEKEELLKGL*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0046	cloud	direct	high	674	0.999	GCA_002860865.1_01373
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	26688	27860	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	26689	27861	GCA_002860865_1_13_47	GCA_002860865_1_13_47	+	216651	.	PFAM:PF06673.10	Major-Capsid-protein	MFKEKMKELKAQIMNIGAEITAKTEELKSVLNNEDLEKAREVRAEIDVLKSQKAEAENNLKAYEIAEVGSDVKTVGQAHKVEEETKSYRESVNEFIRSKGRIRNEDLRFEGQDEVLVPMNEAVNPSTDGLKKTGTEKVTSKEIVTTPIREVKTVLDLKQFVTIHKASKGEGSYPILKQATSKMASVEELEKNPALAKPEFTDVAWKVKTYRGAIPLSQEAIDDADVDLLAIVAEAATQIKVNTTNDAIGGILKTFEAKEAADLDAIKAILNVNLDPAYNVSFVVSQSFYQKLDTMKDKNGRYLLQDSIVSASGKVFLGHPVFVVADTVLGEAGEAKAFVGDIQRGVLFADRVDLGLRWTDNEIYGQYLQAVVRFDVKKADAKAGYFVTMP*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0047	cloud	direct	high	1172	0.999	GCA_002860865.1_01374
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	28028	28342	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	28029	28343	GCA_002860865_1_13_48	GCA_002860865_1_13_48	+	216651	.	CDD:TIGR01560	uncharacterized-phage-protein-(possible-DNA-packaging)	MDNEIFDFLEEVKLYCKIDYDFEDDLLIEMIEAAREQICFAIGNDLQPKDLQGYAKFRLAVKKQVKEEYEHRGMSADTMRYPLANGVLNIIHQLRTRGEVDENS*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0048	cloud	direct	high	314	0.997	GCA_002860865.1_01375
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	28329	28676	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	28330	28677	GCA_002860865_1_13_49	GCA_002860865_1_13_49	+	216651	.	PDB:2KZ4_A	Head-tail-adaptor	MRTRKMNVRITFFKKVGEQNEDGEVLTFKKKCLYKCWAEVSKTSIKDFRENATVTKASGLLEHKDTKTFLIRHLPKLPFDNSCHIDFDGCEYQIVAIERDYANKEFDLIAGVMMS*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0049	cloud	direct	high	347	0.997	GCA_002860865.1_01376
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	28673	29047	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	28674	29048	GCA_002860865_1_13_50	GCA_002860865_1_13_50	+	216651	.	PFAM:PF04883.11	type-I-neck-protein	MTKGLDLCLKNLTILEAKAPRVAREAVTEVAQEFKKELEANTPVYKEETLYRMKEDVKISNFKSGGDAPSKDIGYGRATGWRARFPDDGTIYQKSQGFEEKTINAMTPRAKEIYLQKMKGVLGK*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0050	cloud	direct	high	374	0.997	GCA_002860865.1_01377
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	29044	29490	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	29045	29491	GCA_002860865_1_13_51	GCA_002860865_1_13_51	+	216651	.	PFAM:PF05657.10	tail-component	MIAETEAYKLLIEDEPLNQLFNQFRGKAFPKEYKQGIFTYDIPEKPINMKRKELAPFARIYSTYEIPHEYADDRVIAMEQRITIDFWCKNAKQADNINKRLDTILENNGFERYTANEKPRYMDSDIGLLMNVRKYRFFDWEDLEKERN*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0051	cloud	direct	high	446	0.998	GCA_002860865.1_01378
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	29495	30046	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	29496	30047	GCA_002860865_1_13_52	GCA_002860865_1_13_52	+	216651	.	PFAM:PF06488.10	tail-tube-protein	MSKVKFGLSGFEYGVVTDKNLVPTTKKIPGLKTAKIDITNELKTIAADDGPYVVLSSGITGTTLEVAWLDLPSDVRKDFYGIEVESGIEKYSKKLTPQDIACLFKTTGEDGKKIWIGLLKGKFSLPGMDYETKDGSPDPKNDTVSGSFVARGNEEEGLVLIVGREDNPEFQETKFREMVFPKA*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0052	cloud	direct	high	551	0.998	GCA_002860865.1_01379
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	30155	30493	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	30156	30494	GCA_002860865_1_13_53	GCA_002860865_1_13_53	+	216651	.	.	hypothetical protein	MFEIKFKKAGVLKEFSKDYVNVEDNLLALEHQVRQTALYEAKEDLLNPAKHRELNEAYLDMFVKMYGEQFAAEDLKTASVETLETLNDLYLAALGGKQEEKETTKGKKKKKD*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0053	cloud	direct	high	338	0.997	GCA_002860865.1_01380
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	30697	35064	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	30698	35065	GCA_002860865_1_13_54	GCA_002860865_1_13_54	+	216651	.	PFAM:PF10145.8	minor-tail-protein	MASNIGELVATATLDVAPFQSNVGRLKTYLKGVDNSLKAMENNFKGAGKNVTNLKSLMDQTGSALGNYQKLLSHKSERYNELKASIDDVSTASDEQKKKLLEAGTSMTATAAKVAELKNRYEELAKSMRQAYIDDSAFTKFGKSAQELGNKFKNVGESVSGFGSALTKGVTAPIVAGAGLALKAAIDYESAFAGVKKTVDGTPQQFEKLSASIRNMAKEMPASATEIAAVAEAAGQLGVPIGSIEGFTKTMINLGVSTNLSAEEAATSIAKIGNIMQVSGDDLDSWSAKFGATVVGLGNNFATTESDIVNMANRLAASGKIAGLTTPEILGLSTAMSSVGIEAEAGGTAMTQTLTAISKAVSEGGNDLRLYAETAGTTADQFAEKWRTKPAEALQDFIRGLGKAKEEGKDTNKILDELGLTGIRQSNMLKSLGLAAETMGKAVGLANSEWEKGTALTDEANKRYETMQSKLQMLKNQLTDVAIEFGGPLLDALKDGLEAAKPWISTLADLAKQFSSMSREQQQNIIKWGLALAAIGPFFKILGGGISTIGGLIKAIGGLSRGIGFLSGSLKYLKDFKFAAGAMKAFAGSAGAVETAAAGAASNAGALSGAFGALANPIGLLVGGTALLAAGLVYLGNKKDEARIKTEEFGSQLSDTATKDLRDFQTKVDETSTAVANFGTHAGDAEKVSSAFRKLHEEVAAGAEKANQRMEELAKKLGFSDEEIAKMRAKNEQVVSNTDAMANQVSEIYKRHNGDASKFSQEEKEIVLNNQREMIKARISMMELSGEQQKAAIQALNGEINTLNETQLNHSKDVLKKALEEENQLYKTQKDELKQLLDGKVLDQETYNKKLQALESNHQQTMEALGVKYYQVMQNLDAKLKARTGQSWNYWEEAKKVLEEYGLSYEMIGQKAAEASQKMGDSHSILAKYTSDMSKETREANDAWSLLVGNINENGNFEVKSNVKEVIGEATKSAEGWEQLQFIVKNANLNSNARVTIAEALVESGKWSEMSLEEKQLVVQNQAGLQAIFDSEENLKIWNSMPAEVKQLLLDKTDVMNNVEIASQTLKNYDAQTPKIKELLATDKNFRDAVSRSTETLKTWDATTPFPKDLKLNPNDVLNNGRLSIDKIMEWNLAQANPKSLTATDNTGSGVASAQASVDSAKQTSPIDINATDNTAGASQSASASVNSPTQLSPIGINATDLTGNPSASASAGVNAVKQNFPIDINASNKTQSEASAASNAVNAVKQNSPIGINATNNTGGVISTVWNALTSLPGIKYIDIITRYFTQKHAKGTDNHPGGLAMVNDQRGTLYKELITLPNGTSFIPEGRNVTLPLPPGTKVMKAGDTRTLMNRLGMPNYEKGIGFEDTKLSHLTRRIRDINTTNRSNEQARAVYTVNNTSNQDQAIIRELVELKASIENLLGKLLEKDFNTYLDGKVIAENSYRYQGNIIGREGL*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0054	cloud	direct	high	4367	1.0	GCA_002860865.1_01381
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	35064	35762	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	35065	35763	GCA_002860865_1_13_55	GCA_002860865_1_13_55	+	216651	.	PDB:2X8K_A	Distal-Tail-Protein	MTNYLKVNDFTTANIKHCVVMDFGTIHASPRFSEQIKLYGTNGSYNIIDGTFENYDRTIRIFFERFADLATFVEKFKPVDNKLEFSYQPEAIFYADLLDTEITVRGMYGWELAIKLDMQPFRYQKSVEPIGFTANGTINNPGSIYSEPVIEIEGDGEISLTIGKKTMYLNISRKATIDCRHKKQNIYNAEGVVQNTLRKRGGFFELPVGNSGLVFTGTVRKITIQPNWRYIL*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0055	cloud	direct	high	698	0.999	GCA_002860865.1_01382
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	35759	39454	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	35760	39455	GCA_002860865_1_13_56	GCA_002860865_1_13_56	+	216651	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTNGNTPLNEAYNDEIVQEHNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVFTLLNNYVVNPISLDRQTGSTALSRFAGSITRDNPFSFFSDIEDRHTFNIDSKNAMEAFAKDKHSIIGQWGGDLVRHGYQVQLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGEKPVDKHYKVVVDSPLINKYSQIYEDVVEVNDQDVVDEATLLKYGKQYFRTTLCDMLEDSLELEVVGQSDVPVQMFDIVSIFHEHYNLDVRKKITKYTYSPMAKKLKSIGFGQFQSGLANAIGNAVSDAVKGEAQQLQDDFERQLARELKNADLAFDRQKEELVNQFTDGLNAAKARAEEVKRQLSDTIDQRFSSFNNGPLQEAKRRAEEALRNAGASSLLAQEAKRIGLDSVAKLEEFKRQATSAQTALSGDLDALKRTVTSEVNQASEYRRTTTEVLSRMTGQMNGFATKSEVRQDVAGLTETFAKLKTDTNNLISGAKSEITLAKTEFKKTADALSAKMSAVESYVGQDGQRQDALQRYTREESARQANAIRELVARDYVGKATYQEDVRGLERRFSAISTQTNNDIASKIAQYKQTVDGQFASIRSQVASKANQVDFQRVRETSQLYERILGNTENGIADKVARMAMTNQLFQVEVGKAFAGHQNLFLNSTHTKGFLGNNGIIYVANATQKEVTSDFISVDPNEKIIFQHWVTLPENGMAWTAWQFFDKNKNPIDNRKPGLNAYKTTTGKQHNINQITVPTNAYFIRVSARMYNDGLIKIERGSAPSNYSAAPEDTDEAIRTVQTQLAGSWGVHNKNSVNEIIAGFNLAGRNAGIKAETIRLEGNTLADKLTAIDGYFKRLFVGEGTFATLNADVIRTNSITADKLVFNEALANRMVSNEHITNKLVASRAFVNALKAVTIDASQIVTGTLKGDRIYGGTIRGTEINGTTITGNSRMTIGDNGFLRPTQEGGLQINVPETYSASKGVGVQLLGRELGRIPKGMFIYNSPNWNGGNIIGDNTEDILLTVKGRVSLCNLHNGSPVSGVPIISNFEYQNPIRNLYPIRFIGWDPRSNQLYVDDGTGKSGTWWISVDGSTSDKNLKTNIGDTHYNALDFVQKLMFKEFDWKTDKFGYKKPYTNVGLIAQDVEKIDSSLVYKKGETLALDDFRLLNIALKAIQELALENRKLTHRLENLENERRTA*	hallmark_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0056	cloud	direct	high	3695	1.0	GCA_002860865.1_01383
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	39435	39638	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	39436	39639	GCA_002860865_1_13_57	GCA_002860865_1_13_57	+	216651	.	.	hypothetical protein	MNEEQLNQVLIMTLDDMLVDSKALMLRHNLSKIQLREKEVENQRLQARVEELEALLDEQTKPADKGE*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0057	cloud	direct	high	203	0.995	GCA_002860865.1_01384
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	39641	39991	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	39642	39992	GCA_002860865_1_13_58	GCA_002860865_1_13_58	+	216651	.	.	hypothetical protein	MAETIQNTDNLLDLTKITEPFDLATALRYMKENGEFIRCKNASNDFYMYRDVQKRPVIVNGRRQFKDVETVWAFNQWGGTTTTINVTDLFNQEFYIMKFDEEGNPDWTDPTVEPKE*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0058	cloud	direct	high	350	0.997	GCA_002860865.1_01385
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	40001	40417	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	40002	40418	GCA_002860865_1_13_59	GCA_002860865_1_13_59	+	216651	.	PFAM:PF05105.11	Bacteriophage-holin	MHIEFFNFFRSLIQTEDGLVLYALALIVSMEIIDFVTGTIAAIVNPDIEYKSKIGINGLLRKILGVLLSMILIPMSVLLPEKTGFAFLYSIYLGYIAFTFQSLIENYRKLKGNVTLFQPILKAFQRLLEKDEDKNKGE*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0059	cloud	direct	high	416	0.998	GCA_002860865.1_01386
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	40421	40753	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	40422	40754	GCA_002860865_1_13_60	GCA_002860865_1_13_60	+	216651	.	PFAM:PF09682.9	Phage-holin	MQQITEIIIASATGILTILAGIVVKSIKDFLVKKGGEKTIKIVEILAKNAVNAVEQVATETGYKGEEKLEQARTKIRTELSKYNISMTDKDLDTFVESAVKQMNDAWKEQ*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0060	shell	direct	high	332	0.997	GCA_002860865.1_01387
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	40756	40863	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	40757	40864	GCA_002860865_1_13_61	GCA_002860865_1_13_61	+	216651	.	.	hypothetical protein	MIKIINNTIFNGIAGSRPTEKPKYYIMHNDEGAMA*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0061	cloud	direct	high	107	0.991	GCA_002860865.1_01388
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	40897	41922	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	40898	41923	GCA_002860865_1_13_62	GCA_002860865_1_13_62	+	216651	.	CDD:cd06417	GH25_LysA-like-endolysin	MKKNDLFIDVSSHNGYDITGILSDMGTQNTIIKISEGTTYLNPCLSAQVEQSNPIGFYHFAWFGGDVDEAEREARYFLDNVPKKVQYLVLDYEDHASDDSQANTNACLRFMQVIADAGYKPIYYSYKPFTLNNIDYQQILSQFPNSLWIAGYGLNDGTADFEYFPSMDGIRWWQYSSNPFDKNIVLLDDEEDNSISKNDLKSLNTIANEVIQGLWGNGQERFNNLSNAGYDAQAVQDKVNDLLNAENTSKDLDTLANEVLQGLWGNGQERFNRLTDAGYDAEEVQDKVNSLLGGGNTVDLNTIANEVIQGLWGNGQERFDNLTNAGYNAQAVQDRVNELLS*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0062	cloud	direct	high	1025	0.999	GCA_002860865.1_01389
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	42640	43083	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	42641	43084	GCA_002860865_1_13_63	GCA_002860865_1_13_63	+	216651	.	PRK13956	dUTP diphosphatase. 	MKIRGFELVSSFTDENLLPKRETAHAAGYDLKVAVRTVIAPGEIVLVPTGVKAYMQPTEVLYLYDRSSNPRKKGLVLINSVGVIDGDYYGNPGNEGHIFAQMKNITDQEVVLEVGERVVQAVFAPFLIADGDAANGVRTGGFGSTGH*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0063	persistent	direct	high	443	0.998	GCA_002860865.1_01390
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	43043	43624	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	43044	43625	GCA_002860865_1_13_64	GCA_002860865_1_13_64	+	216651	.	pfam00300	Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	MAFELVDLGQLDTKMKIIFIRHGEPDYSMLDKLENPQLYSGFGRDLAPLTGKGRSLAKEVAKTACFGKAEIIISSSVTRALETAHYIAVETGLDLFVEPFFHEWRPDLDGTNSDLTSVLVAHEYYLKHQGSLPEDSPYRYETALEMRHRFLRTLEKYKNYKTIIIVTHGMLMRQFVPNEKIDFCQVIECELEI*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0064	shell	direct	high	581	0.998	GCA_002860865.1_01391
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	44111	44626	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	44112	44627	GCA_002860865_1_13_65	GCA_002860865_1_13_65	+	216651	.	6HVI_A	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 (E.C.2.7.1.105,3.1.3.46)	MKIIFIRHGEPDYRELEDRSYTGFGIDLAPLSEKGRQQAQKLSKNPLLPSAEIIISSAVTRALETASYVACVTGLPLRVEPLFHEWQVYESGTDNFEKARTMFLENKGELLPNSPIQYETATEMKSRFLECMSKYREHQTVVVVAHRMLMRQFVPNEKIDFCQVIECELEI*	hhsuite_tools	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0065	persistent	direct	high	515	0.998	GCA_002860865.1_01392
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	44739	46001	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	44740	46002	GCA_002860865_1_13_66	GCA_002860865_1_13_66	+	216651	.	PDB:3BH0_A	Helicase-ATPase	MEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDNPTNPQECFVGELGLTGEIRRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIQVIGVTTIQEVLKKVFA*	rep_hall_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0066	persistent	direct	high	1262	0.999	GCA_002860865.1_01393
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	46074	46571	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	46075	46572	GCA_002860865_1_13_67	GCA_002860865_1_13_67	+	216651	.	cd03379	Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity.  Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	MSYFEQFMQANQAYVALHGQLNLPLKPKTRVAIVTCMDSRLHVAQALGLALGDAHILRNAGGRVTEDMIRSLVISQQQMGTREIVVLHHTDCGAQTFENGPFQEYLKEELGVDVSDQDFLPFQDIEESVREDMQALIESPLIPDDVIISGAIYDVDTGSMTVVEL*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0067	persistent	direct	high	497	0.998	GCA_002860865.1_01394
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	46596	47411	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	46597	47412	GCA_002860865_1_13_68	GCA_002860865_1_13_68	+	216651	.	COG2339	Membrane proteinase PrsW, cleaves anti-sigma factor RsiW, M82 family [Signal transduction mechanisms]. 	MKKNSILFIFILLLCIGLQYETIYYTDGSMSGAEYGLMGVSIFLALFYMIPALYFLFRIGKKWELPKKALVLSLLGGMFLSGWLSSFANTYIHDLLGVLFPDSTFLNAFESAIVAPLVEEPLKLLPLVFVLALVPVRKLKSLFLLGIASGLGFQMIEDIGYIRTDLPEGFDFTISRILERIISGIASHWTFSGLAVVGVYLLYRAYKGQKAGKKEGLIFLGLALGTHFLFNSPFVELETELPLAIPVVTAITLYGFYQAYRFVEKNDEIMN*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0068	persistent	direct	high	815	0.999	GCA_002860865.1_01395
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	47556	48524	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	47557	48525	GCA_002860865_1_13_69	GCA_002860865_1_13_69	+	216651	.	PRK02269	ribose-phosphate diphosphokinase. 	MSFSDLKLFALSSNQELAKRVAQEIGIELGKSSVRQFSDGEIQVNIEESIRGKHVFILQSTSSPVNDNLLEILIMVDALKRASAESVNVVMPYYGYARQDRKARAREPITSKLVANMLEVAGVDRLLTIDLHAAQIQGFFDIPVDHLMGAPLIADYFERRGMVGSDYVVVSPDHGGVTRARKLAEFLKTSIAIIDKRRSVDKMNTSEVMNIIGKVEGKTCILIDDMIDTAGTICHAADALAEAGAVEVYASCTHPVLSGPAMDNIQKSAIKKLVVLDTIYLPEERLIDKIEQISIAHLLGDAIVRIHEKRPLSPLFGIEKKI*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0069	persistent	direct	high	968	0.999	GCA_002860865.1_01396
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	48641	49576	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	48642	49577	GCA_002860865_1_13_70	GCA_002860865_1_13_70	+	216651	.	PFAM:PF04754.11	Putative-transposase,-YhgA-like	MTVRHPGISPTNDLVAKKIFSNPEITCQFIRDMLDLPAKNVTILEGSNIHVLPSLPYSAQDFYTSIDVLAELDNGTQVIIEIQVHHQNFFINRLWAYLCSQVNQNLEKIRQREGDTHQSYKHIAPVYAIAIVDSNYFQDDQAFHSFSMREDTTGEVLTITNNGQEHHLIKMAFLELRKYRETSKDSVRKPWLEFFGNKPFTQQPERAISQADQLLDYKSWSEEDRKMFSQLRMREEQALLAQDYALETARAKGIEQGIEQGLERGLERGKVEGREEGKLIAFLDMVRQGLLTAEVASEQLGMTVAEFETLL*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0070	persistent	direct	high	935	0.999	GCA_002860865.1_01397
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	49786	49911	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	49787	49912	GCA_002860865_1_13_71	GCA_002860865_1_13_71	+	216651	.	.	hypothetical protein	MFSQLRMREEQALLAQDYALERAEEKGLERGRPEGIEEGEK*	.	hypothetical_protein	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0071	cloud	direct	high	125	0.992	GCA_002860865.1_01398
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	50166	50633	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	50167	50634	GCA_002860865_1_13_72	GCA_002860865_1_13_72	+	216651	.	NF040525	class B sortase, LPKTxAVK-specific. This branch of the class B sortase family is found in multiple species of Streptococcus and Gemella. It processes target proteins that end with the motif LPKTxAVK-COOH, which differ from most sortase recognition sites in lacking an additional C-terminal transmembrane helix. Substrates of this sortase include the amylase-binding adhesin AbpA, as well of other proteins with similar N-terminal and C-terminal domains but unrelated central regions.	MDTDNKKDFSDRLTWLFGHARGSKVGDHRMFNDVNYYSRQDYFDEHPYVVIETPERKYYYEAVAMIIVPEETAFYRTSFDDDKDFQTQLTTIYETAEVKKPNVKVSAKDKYLVLSTCREEDETIRANLYLRQIPDSEMSEFVKQHKDQLTYKPTR*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0072	cloud	direct	high	467	0.998	GCA_002860865.1_01399
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	50830	53499	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	50831	53500	GCA_002860865_1_13_73	GCA_002860865_1_13_73	+	216651	.	PDB:4XVI_A	DNA-polymerase	MVFFGAFLYNGCMDKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVEPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKLGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLDGIYENIDEMKTSKMKENLINDKEQAFLSKTLATIDTKAPIEIGLEDLVYSGPDVENLGKFYDEMGFKQLKQALNVSSADVAESLDFTIVDQISQDMLSEESIFHFELFGENYHTDDLVGFAWSCGEKLYATDKLELLQEPIFKDFLEKTSLRVYDFKKAKVLLNRFDVDLQAPAFDSRLAKYLLSTVEDNEIATIASLYSQTCLVDDETFYGKGVKKTLPEREKFLEHLARKLAVLVETAPILIEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVKKETLLEMQDENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIDRPEDVTPNDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK*	common_virus_hmm	common_virus	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0073	persistent	direct	high	2669	1.0	GCA_002860865.1_01400
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	53584	54021	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	53585	54022	GCA_002860865_1_13_74	GCA_002860865_1_13_74	+	216651	.	COG1832	Predicted CoA-binding protein [General function prediction only]. 	MSQEFINPSDGVIRQYLATSKTLAVVGLSDREETTSNRVTKEMQARGYKIIPVNPKVAGGEILGEKAYASLAEIPFPVDIVNVYRRSEFLPDVARDFLKADAKIFWAQLGLESLEAEEILRAGGCDDIVMNRCIKREHTRLIEEV*	mmseqs_cdd	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0074	persistent	direct	high	437	0.998	GCA_002860865.1_01401
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	CDS	54202	55212	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	54203	55213	GCA_002860865_1_13_75	GCA_002860865_1_13_75	-	216651	.	PF03601.14	Conserved hypothetical protein 698	MSFLSKNGAGILACLLISILSWYLGGFFPVIGAPVFAIFIGMLLHPFLSPYKQLDAGLTFSSKKLLQYAVILLGFGLNISQVFAVGQSSLPVILSTISIALIVAYLFQRFFALDTKLATLIGVGSSICGGSAIAATAPVIHAKEKEVAQAISVIFFFNVLAALIFPTLGTWLHLSNEGFALFAGTAVNDTSSVTATASAWDSLYQTNTLESATIVKLTRTLAIIPITLFLSYWQSREQKNKQGLQLKKVFPLFILYFILASLLTTLLTSLGVSSNFFTPLKQLSKFLIIMAMSAIGLKTNLVAMVKSSGKSIVLGAICWIAIILTSLGMQTLIGIF*	hhsuite_tools	nonviral_gene	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_CDS_0075	persistent	direct	high	1010	0.999	GCA_002860865.1_01402
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	13460	14011	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	1	552	GCA_002860865_1_17_12	GCA_002860865_1_17_12	+	88297	.	cd01014	Nicotinamidase_ related amidohydrolases.  Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	MVHTALLIIDMQKAFDNPIWGERNNSQAEQQALRVLAYFRKHALPVLHVQHISDNPQSQFHNKQNQEFKSGFEPVASEPVFQKTVNSAFIGTNLETYLRKNQICHLVVVGLTLPHCVSTTTRMAANLGFEVTLLADATASFTLSNKNGQAISPETIHEINLLSLQDEFAQILTTEEFLTQVQV*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0001	shell	direct	high	551	0.998	GCA_002860865.1_01886
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	14082	14813	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	623	1354	GCA_002860865_1_17_13	GCA_002860865_1_17_13	-	88297	.	.	hypothetical protein	MFKMQCYNYITKRFLYISKTLQRSRKMKKKTYIKLMAATVLASTLLLGACGNKKETTQASSSAKTSQSSSSKAASASKESKTQKSSSSVSSEKAKASTDQSAATTTSSPATPAPEQRQGQEVSNQQAPQTQSNQSSYDPTTDRKLQDKQAEQNKRYKGVLTMVDGDFSAAAGNWKGENSETITVSSGGQFTVESADGKKENYSIRGYSYTLDGGKYNAKIGGGKIIQITTGADGKVSSVALSQ*	.	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0002	persistent	direct	moderate	654	0.893	GCA_002860865.1_01887
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	15133	15243	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	1674	1784	GCA_002860865_1_17_14	GCA_002860865_1_17_14	+	88297	.	.	hypothetical protein	MIVDIALLYLHETYLKYKYKDLFIRIMSNSKKNSHP*	.	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0003	.	unmatched_CDS	none	0	0	.
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	15315	17747	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	1856	4288	GCA_002860865_1_17_15	GCA_002860865_1_17_15	-	88297	.	PDB:4M4W_K	Replicative-helicase,-DNA-primase	MNYSKALNECIESAYMVAGHFGARYLESWHLLIAMSNHSYSVAGATLNDYPYEMDRLEEVALELTETDYSKDETYTELPFSHRLRVLFDEAEYVASVVHAKVLGTEHVLYAILHDGNALATRILERAGFSYEDKKDQVKIAALRRNLEERAGWTREDLKALRQRHRTVADKQNSMANMMGMPQTPSGGLEDYTHDLTEQARSGKLEPVIGRDKEISRMIQILSRKTKNNPVLVGDAGVGKTALALGLAQRIASGDVPVEMAKMRVLELDLMNVVAGTRFRGDFEERMNNIIKDIEEDGQVILFIDELHTIMGSGSGIDSTLDAANILKPALARGTLRTVGATTQEEYQKHIEKDAALSRRFAKVTIEEPSVADSMAILQGLKATYEKHHRVQITDEAVETAVKMAHRYLTSRHLPDSAIDLLDEAAATVQNKAKHVKADDSGLSPADKALMDGKWKQAAQLIAKEEKVPVYKDLVTESDILTTLSRLSGIPVQKLTQTDAKKYLNLEAELHKRVIGQDQAVSSISRAIRRNQSGIRSHKRPIGSFMFLGPTGVGKTELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKDIRFDQENMEKRMFEELKKAYRPEFINRIDEKVVFHSLSSDHMQEVVKIMVKPLVASLAEKGIDLKLQASALKLLANQGYDPEMGARPLRRTLQTEVEDKLAELLLKGELEAGSTLKIGVKAGQLKFDIA*	common_virus_hmm	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0004	persistent	direct	high	2432	1.0	GCA_002860865.1_01888
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	17749	18207	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	4290	4748	GCA_002860865_1_17_16	GCA_002860865_1_17_16	-	88297	.	COG4463	Transcriptional regulator CtsR [Transcription]. 	MRFKNTSDHIEAYIKAILDQSGIVELQRSQLADTFQVVPSQINYVIKTRFTESRGYLVESKRGGGGYIRIGRIEFSSHHEMLRELLYSIGERVSQEIYEDILQLLVEQELMTKQEMNLLVSVALDRVLGEEAPVLRANMLRQVIQEVDRKGK*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0005	persistent	direct	high	458	0.998	GCA_002860865.1_01889
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	18698	19033	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	5239	5574	GCA_002860865_1_17_17	GCA_002860865_1_17_17	-	88297	.	pfam09639	YjcQ protein. YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is expressed in bacteria and also in viruses. It appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown. However, it is thought to be a prophage head protein in viruses.	MAKNDYWVVVYKILNYYFQKMKHGEPADENEINSSVLEIPHLYLMDVYRNLFDDGFLTGACVTGDMSGDVYIENLSLVRITTKGIEYLEDNSKMKQAYKILKEIKDWIPGM*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0006	cloud	direct	high	335	0.997	GCA_002860865.1_01890
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	19287	19697	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	5828	6238	GCA_002860865_1_17_18	GCA_002860865_1_17_18	-	88297	.	PFAM:PF05263.10	transcriptional-regulator	MYELSNRDLDGIDIELGRYRTLANRIYLRRQELIHNKKHSTEDYTGGKGKTVSSPTEATIIRIEEDQTLRYLEGFKLVVDTLMENLIESDLVIFKMRYLEAGATWEDVAEKLNKTTRYINSRRKVIAKRFVELKGY*	phrogs_hmm	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0007	shell	direct	high	410	0.998	GCA_002860865.1_01891
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	20075	20623	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	6616	7164	GCA_002860865_1_17_19	GCA_002860865_1_17_19	-	88297	.	.	hypothetical protein	MDINQVFDTLDDLDNKKSKINSAREQLSKKRKSLLGNQAVSFENIDSFLSNNLESLEQLENMEKAINGLQEKFDSDFSEANAVIFEYIFKETKQRMETKKIYKQYRKKLRRILDAYDEIQELKKDVEEIHTGVVREISQRHSLSPYRTEVSPLTVLPFLTPDSSGWMNFSKEYRDIKVYLEK*	.	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0008	shell	direct	high	548	0.998	GCA_002860865.1_01892
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	20633	21493	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	7174	8034	GCA_002860865_1_17_20	GCA_002860865_1_17_20	-	88297	.	PFAM:PF06673.10	Major-Capsid-protein	MTTNLVKQKENLEAYIRSTGYNTRGMNVENNHVLIEKPILDSYENEHQRKELVDLVNVIETRTRGGKYEVTDFESDSLQEVSENSVERTEADKKKTISVDYLVKLFSGKLDFSQEQLDDGQYNLTDFLGKKIIKLKRRTRNREIGKILQTAKVQTATSMDDLKSIVSLINPERNVSMVVSQSLFSVLEKMKDTSGNYLLKVDKETGTSETFFVDNFLIVDDTTLGNKGDKKGFIGDLENFVTLFDRKKDTLSWVNANDYFGKRLILHTRFDVKKVEEDCGYSIQWN*	hallmark_hmm	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0009	shell	direct	high	860	0.999	GCA_002860865.1_01893
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	21519	21878	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	8060	8419	GCA_002860865_1_17_21	GCA_002860865_1_17_21	-	88297	.	PFAM:PF04883.11	putative-tail-component	MSLTSDLANEIAKTLEAYSEEVEEQIDLIAEEVTNEAVNELKQTSPKRYGKYAKNWRFKKNSKGSFVIYNADPTYRLTHLLEHGHVLRNGGRSKAIPHIKPVEEKVKEKFEQRIKNLGK*	hallmark_hmm	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0010	cloud	direct	high	359	0.997	GCA_002860865.1_01894
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	21927	22157	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	8468	8698	GCA_002860865_1_17_22	GCA_002860865_1_17_22	-	88297	.	.	hypothetical protein	MAGDTSLGYVVANKFSMDPDKRQKIFSQCKKEGDSLEQRKQEILEKYANKQDKPKSRKNDSKGSESHKRKTKSKEF*	.	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0011	shell	direct	high	230	0.996	GCA_002860865.1_01895
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	22247	22408	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	8788	8949	GCA_002860865_1_17_23	GCA_002860865_1_17_23	-	88297	.	PF13128.6	Protein of unknown function (DUF3954)	MNDDKMRFATEKGFVVYEKCGIIEIEKVPSFGEITLFYSDGKFTHLVKKETKK*	hhsuite_tools	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0012	shell	direct	high	161	0.994	GCA_002860865.1_01896
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	22405	23250	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	8946	9791	GCA_002860865_1_17_24	GCA_002860865_1_17_24	-	88297	.	PDB:4M4W_K	Replicative-helicase	MKEQFKEFNNRKISDKVCDIHQVNYWEISVPVLGGSERKVQAFCPECVKGEIKQKEKDLLQQFEDRQAYFKTYDVLMRDSTIPNELKGATFDNFFVKTTEERQMLEFVKGQAQKYLAGMTGNTLISGSTGIGKSHLSLALAKEINESFREKNEPKSVLFVSLTEIIKQIKEGWAYGRNANLTEYEAVKKLVDVDFLIIDDLGAKNGTVTPKSDWEQDFLFDIINNRETTIFNTNLDSSELRTVYNARNSSRILKGLEGNTFKAFTIKDKRYTINTVRGEYQ*	rep_hall_hmm	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0013	shell	direct	high	845	0.999	GCA_002860865.1_01897
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	23262	24122	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	9803	10663	GCA_002860865_1_17_25	GCA_002860865_1_17_25	-	88297	.	PFAM:PF07261.10	Replication-initiation-and-membrane-attachment	MMAKTKIYFWLKVDKKFFDNLFIKRLKNMPGGYTMTVIYIRLMLESLEDDCILYYEGYFDSLVQELALKLDVSEDDINMTVAYFTKCGLIQIDDDGHATLSQAKAMVESETNWAKYKRDQRKNSQDLPKLENVQNRRTVSNSCPTEIEIEKESDKELYKEYILSGKPDFTFPNWLTPSMIDEVTKGRPEKYLIRIPLAYLNHTVGKNYKYLDKNLKPIIARFKEGYTLEDFKQVIDIKTAEWKDSPEFSKYLRPETLFGSKFDGYLNQKPKTIKGKSEDNFPDLPF*	rep_hall_hmm	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0014	shell	direct	high	858	0.997	GCA_002860865.1_01898
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	24106	24426	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	10647	10967	GCA_002860865_1_17_26	GCA_002860865_1_17_26	-	88297	.	PFAM:PF12964.6	HTH-DNA-binding-protein	MGDIFSLQRLSHGGTKMFEKMIEDLKSKILEAVERYLKSHEKAPQKRLDLISKVELKEELGIGDKTLTKWEGAGLPQYIPPIEDTRKAYYKVSDVLKFLGVDDGKD*	phrogs_hmm	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0015	shell	direct	moderate	273	0.85	GCA_002860865.1_01899
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	24456	24590	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	10997	11131	GCA_002860865_1_17_27	GCA_002860865_1_17_27	-	88297	.	.	hypothetical protein	MNELDLTNIQALIFIVVAIGLLIYLNHRDRKKKRSNRARKYTDD*	.	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0016	cloud	direct	high	134	0.993	GCA_002860865.1_01900
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	24583	24792	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	11124	11333	GCA_002860865_1_17_28	GCA_002860865_1_17_28	-	88297	.	.	hypothetical protein	MTVNTNDVLVDYEGLCCQLTDTLLVLEMASMEDSKQSSALLNTVIQAMNQLISEHTQQANDYRKGIKHE*	.	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0017	cloud	direct	high	209	0.995	GCA_002860865.1_01901
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	25115	25375	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	11656	11916	GCA_002860865_1_17_29	GCA_002860865_1_17_29	-	88297	.	.	hypothetical protein	MENDFKTVTNAKGLEIPKYPKDFKKLVEKDRQLAEYLCMNYENLDSEDLGAFLETVEQGISWILDLIESKDLLYKPKSGSNHAKRK*	.	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0018	shell	direct	high	260	0.996	GCA_002860865.1_01902
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	25387	26052	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	11928	12593	GCA_002860865_1_17_30	GCA_002860865_1_17_30	-	88297	.	pfam09669	Phage regulatory protein Rha (Phage_pRha). Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that Rha is a phage regulatory protein.	MIYLGTVLGGKHEQQEERSEPMELVYMDGRKEPYTLSSIVAECTGLQHHTITKTIRKHQVRFERFGKVGFKIQAMESGQNTKDYILNEQQATLLVTFLKNTEQVANFKTNLVKAFFEMRDELSKRYLQRELEKPKRKSLTEAIQTWEKAPKHAYSTLTNLLLKGATGKNKAQLMNERESKNGIDGLTSVELTNYQRLEDMAIAMISLNRGYSEIKELIFKV*	mmseqs_cdd	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0019	shell	direct	moderate	603	0.905	GCA_002860865.1_01903
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	26230	26418	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	12771	12959	GCA_002860865_1_17_31	GCA_002860865_1_17_31	-	88297	.	PFAM:PF10078.8	transcriptional-regulator	MLLTIEHAKKVRRKRGELQLGKVQLAKKLKITPPTLAKIEAGNYDAPKRIYESVIEWLLEDY*	phrogs_hmm	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0020	cloud	direct	high	188	0.995	GCA_002860865.1_01904
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	26596	27234	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	13137	13775	GCA_002860865_1_17_32	GCA_002860865_1_17_32	+	88297	.	PFAM:PF10078.8	transcriptional-regulator	MEKQTPKNNLKKLRIEKGFSQKEFYEDIIKKELGLNITLRTYQNWENPNNEIKSKPALLLAEYFGVNVGYLLGEDERRTTYLTSTLEKYSDNMESPVDFAGYGLLALTRGEKVRDTVIENLREITDYYGHRRFAKEEFKNWSQEKKDLMLKGMQDYADSNIGRFLAGLMTFPDKTKITIIDFLTLDNKEREAVSTIISSLADNPVLHKDYDD*	phrogs_hmm	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0021	cloud	direct	high	638	0.998	GCA_002860865.1_01905
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	27311	27907	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	13852	14448	GCA_002860865_1_17_33	GCA_002860865_1_17_33	+	88297	.	.	hypothetical protein	MGYRTKSFIRKTSAYRRLLMKKLLSTSAILLSATLLVACSNNQSTTKDSSEQPKTEQKNTTSTNTKAKVDNSKYDDLISEIKSKLDPESTGAISVKIQNNVIDSDSSEPHDTIMILLTGTAKDSAKETMDAINSNSATTNQQNAITVFRMSISEFAKKLPDDNTTLSLGYEKSADQYDLIAKSAKQKDFIPIGELIVN*	.	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0022	shell	direct	moderate	539	0.903	GCA_002860865.1_01906
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	28097	28861	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	14638	15402	GCA_002860865_1_17_34	GCA_002860865_1_17_34	+	88297	.	PFAM:PF02452.16	antitoxin-mazE-like	MNKENPYFEQTKQNYIEVEKLYKLGKAKHTSSKYRFLAPAVKRQSEQFLFEAKTQKRKYWKFSRGSLVFVEFGVNIGGELSNNHWAIVLDKVDSPYKKTLTVIPLTSKNQIDTVLIDEVIAEYPSILLDEYIEKLHKELFAYLKYLDSNNAVTEAALSDVYQAYTEQFSNEIIQPKIIDDDNLKRTQSEINDVIELTQYYKKYIKRSYAKCNNLQTISKDRILKKNRLDPIGKMKVSDNTLDKINEKLKELYLF*	phrogs_hmm	hypothetical_protein	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0023	shell	direct	high	764	0.999	GCA_002860865.1_01907
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	29174	30340	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	15715	16881	GCA_002860865_1_17_35	GCA_002860865_1_17_35	+	88297	.	PDB:1Z19_B	Integrase	MKITQHTKKDGSAVYRSSIYLGIDSVTGKKVKTTISARTKKELKNKATQAKVEFEKNGSTRKQRSHITSYRELVDLFWQTYQHTIKTNTQIKIKGCLNNYLLPSFGTYKLDKLTPVIIQTQVNKWADEYNQDGTGYKEYNHLHALNKRILQYGVSIQALDNNPARDVVIPRKITRDKQEIKYFQDQELKNFLSYLDNLENTFVNFYDTVLYKTLLATGLRIRECLALEWSDIDLQNGTIDINKTLNILNQVNSPKTKSSYRVLDIDHKTVLMLRLYRARQAENGRNIGLTYEKVFSDSFDNYVNTRKVDYRLHKHLKNANCTDLGFHAFRHTHASILLNAGLPYKEIQTRLGHAKISVTMDTYSHLSKENQKRAISFFETALEKIKSS*	common_virus_hmm	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0024	shell	direct	high	1166	0.999	GCA_002860865.1_01908
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	30497	31225	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	17038	17766	GCA_002860865_1_17_36	GCA_002860865_1_17_36	-	88297	.	COG1116	ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]. 	MTEIRLEHVSYAYGQERILEDINLQVTSGEVVSILGPSGVGKTTLFNLIAGILEVQSGRIVLDGEENPKGRVSYMLQKDLLLEHKTVLGNIILPLLIQKVDKAEAIARADEILATFQLTAVRDKYPHELSGGMRQRVALLRTYLFGHKLFLLDEAFSALDEMTKMELHAWYLEIHKQLQLTTLIITHSIEEALNLSDRIYILKNRPGQIVSEIKLDWSEDEDKEVQKIAYKRQILAELGLDK*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0025	persistent	direct	high	728	0.999	GCA_002860865.1_01909
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	31225	32232	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	17766	18773	GCA_002860865_1_17_37	GCA_002860865_1_17_37	-	88297	.	pfam09084	NMT1/THI5 like. This family contains the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine. They are regulated by thiamine. The protein adopts a fold related to the periplasmic binding protein (PBP) family. Both pyridoxal-5'-phosphate (PLP) and an iron atom are bound to the protein suggesting numerous residues of the active site necessary for HMP-P biosynthesis. The yeast protein is a dimer and, although exceptionally using PLP as a substrate, has notable similarities with enzymes dependent on this molecule as a cofactor.	MKKTWKVFLTVLTALVAVVLVACGQGTASKDNKEAELKKIDFILDWTPNTNHTGLYVAKEKGYFKEAGVDVDLKLPPEESSSDLVINGKAPFAVYFQDYMAKKLEKGAGITAVAAIVEHNTSGIISRKSDNVASPKDLVGKKYGTWNDPTELAMLKTLVESQGGDFEKVEKVPNNDSNSITPIANGVFDTAWIYYGWDGILAKSQGVDANFMYLKDYVKEFDYYSPVIIANNDYLKDNKEEARKVIQAIKKGYQYAMEHPEEAADILIKNAPELQEKRDFVIESQKYLSKEYASDKEKWGQFDAARWNAFYKWDKENGILKEDLTDKGFTNEFVK*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0026	persistent	direct	high	1007	0.999	GCA_002860865.1_01910
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	32271	33029	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	18812	19570	GCA_002860865_1_17_38	GCA_002860865_1_17_38	-	88297	.	COG0600	ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]. 	MRNLKSILRRHISLLGFLGVLSIWQLAGFLKLLPKFILPTPLEILQAFVRDREFLWHHSWATLRVALLGLILGVLIACLMAVLMDSLTWLNDLIYPMMVVVQTIPTIAIAPILVLWLGYGILPKIVLIILTTTFPIIVSILDGFRHCDKDMLTLFSLMRAKPWQILWHFKIPVSLPYFYAGLRVSVSYAFITTVVSEWLGGFEGLGVYMIQSKKLFQYDTMFAIIILVSIISLLGMKLVDISEKYVIKWKRS*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0027	persistent	direct	high	758	0.999	GCA_002860865.1_01911
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	32992	33333	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	19533	19874	GCA_002860865_1_17_39	GCA_002860865_1_17_39	-	88297	.	COG0011	Uncharacterized conserved protein YqgV, UPF0045/DUF77 family [Function unknown]. 	MVKVFLFVKGKREEEVLMKASIALQILPLSQGIDRIAVIDQVIAYLQAQEVTMVVTPFETVLEGEFDELMRILKEALEVAGQEADNVFANVKINVGEILSIDEKLEKYTETTH*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0028	persistent	direct	moderate	291	0.851	GCA_002860865.1_01912
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	33535	34647	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	20076	21188	GCA_002860865_1_17_40	GCA_002860865_1_17_40	-	88297	.	PDB:4OLS_C	Endolysin	MKVLPFKVTETGFSLRKSVKKVVPFLAVGLMLVASDSVYAYSGGNGSIARGDDYPAYYKNGSQEIDKWRMYSRQCTSFAAFRLSNINGFEIPAAYGNANEWGYRARREGYRVDSVPTIGSIAWSTAGGYGHVAWVSNVMGDNIEIEEYNYGYTGSYNKRIIKANTMTGFIHFKDLDRGNVVSSGKVFNSQPSSTGGTHYFKNKAAIKNQPLVSATSIAYYSPGESVHYDQVLEKDGYKWLSYISYSGSRRYIQLEEVVSSQNQTEGSSNDVLTVGWKKINGSWYHFKSNGSKSTGWLKDGSSWYYLKSSGEMQTGWLKENGSWYYLDSSGAMKTGWYQVSGKWYYSYSSGALAVNTTVDGYRVNSDGERV*	common_virus_hmm	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0029	persistent	direct	high	1112	0.999	GCA_002860865.1_01914
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	34736	35002	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	21277	21543	GCA_002860865_1_17_41	GCA_002860865_1_17_41	-	88297	.	3FB9_B	uncharacterized protein	MTDAFTDVAKMKKIKEEIKAHEGHVIEMTLENGRKRQKNRLGKLIEVYPSLFIVEFGNVEGDKQANVYVESFTYSDILTEKNLIHYLD*	hhsuite_tools	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0030	persistent	direct	high	266	0.996	GCA_002860865.1_01915
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	34999	36357	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	21540	22898	GCA_002860865_1_17_42	GCA_002860865_1_17_42	-	88297	.	PDB:3BGW_F	DNAB-Like-Replicative-Helicase	MAEVEELRVQPQDILAEQSVLGAIFIDESKLVFVREYIESRDFFKYAHRLIFQAMVDLSDRGDAIDATTVRTILDNQGDLQNIGGLSYLVEIVNSVPTSANAEYYAKIVAEKAMLRRLISKLTESVNQAYEASQPADEIIAQAEKGLIDVSENANRSGFKNIRDVLNVNFGNLEARSQQTTDITGIATGYRDLDHMTTGLHEEELIILAARPAVGKTAFALNIAQNIGTKLDKTVAIFSLEMGAESLVDRMLAAEGLVESHSIRTGQLTDEEWQKYTIAQGNLANASIYIDDTPGIRITEIRSRSRKLAQETGNLGLILIDYLQLITGTGRENRQQEVSEISRQLKILAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYRDDYYERGGEEEEGIPNNKVEVIIEKNRSGARGTVELIFQKEYNKFSSISKREEIR*	rep_hall_hmm	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0031	persistent	direct	high	1358	0.999	GCA_002860865.1_01916
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	36401	36853	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	22942	23394	GCA_002860865_1_17_43	GCA_002860865_1_17_43	-	88297	.	COG0359	Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]. 	MKVIFLADVKGKGKKGEIKEVPTGYAQNFLIKKNLAKEATAQAVGELRGKQKSEEKAHAEMIAEAKAIKAQLEAEETIVEFVEKVGPDGRTFGSITNKKIAEELQKQFGIKIDKRHIQVQAPIRAVGLIDVPVKIYQDITSVINLRVKEG*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0032	persistent	direct	high	452	0.998	GCA_002860865.1_01917
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	36850	38844	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	23391	25385	GCA_002860865_1_17_44	GCA_002860865_1_17_44	-	88297	.	COG3887	c-di-AMP phosphodiesterase, consists of a GGDEF-like and DHH domains [Signal transduction mechanisms]. 	MGAKRFGMKKFYVSPIFPLILGIVAFGVLSVQLVFVTNTLVTLFLLLLILGSYILLFIHQRDYYSRSEVEQIQYVNHQAEESLTTLLEQMPVGVIKLDLSSGEVEWFNPYAELILTNEVGEIDVALIQTIIKASVGNPGSYATLGETRYSVHMDKMSGVLYFFDVSGEYEATVELVTSRPVIGVVSVDNYDDLEDETSESDISHINSFVANFVSEFAGKHAMFSRRVSMDRFYLFTDYTVLEGLMNDKFSVIDSFREESKQRQLPLTLSMGFSYGDGNHDEIGKVALLNLNLAEVRGGDQVVVKENDETKNPVYFGGGSAASIKRTRTRTRAMMTAISDKIRSVDQVFVVGHKNLDMDALGSAVGMQLFASNVTENSYALYDENQMSPDIERAISFLEQEGVTKLLSVKDAMGMVTNRSLLILVDHSKTALTLSKDFYDLFTQTIVIDHHRRDQDFPDNAVITYIESGASSASELVTELIQFQNSKKNRLSRMQASVLMAGMMLDTKNFTSRVTSRTFDVASYLRTRGSDSIAIQEIAATDFEEYREVNELILQGRKLGSDVLIAEAKDSKCYDTVVISKAADAMLAMSGIEASFVLAKNTQGFISISARSRSKLNVQRIMEELGGGGHFNLAAAQIKDSTLSEAGEKLTEIVLNEIKEKEKEE*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0033	persistent	direct	moderate	1974	0.989	GCA_002860865.1_01918
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	38959	39507	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	25500	26048	GCA_002860865_1_17_45	GCA_002860865_1_17_45	-	88297	.	TIGR00741	ribosomal subunit interface protein. This model includes a small protein encoded by one of two genes, both downstream of the gene rpoN for sigma 54, whose deletion leads to increased expression from sigma 54-dependent promoters. It also includes the N-terminal half of a light-repressed protein LtrA of Synechococcus PCC 7002 and the N-terminal region (after removal of the transit peptide) of a larger plastid-specific ribosomal protein of spinach. The member of this family from E. coli is now recognized as a protein at the interace between ribosomal large and small subunits, with about 1/3 as many copies per cell as the number of ribosomes. [Protein synthesis, Translation factors]	MIKYSIRGENLEVTEAIRDYVVSKLEKIEKYFQAEQELDARVNLKVYREKTAKVEVTIPLGSITLRAEDVSQDMYGSIDLVTDKIERQIRKNKTKIERKNKNKVATSQLFTDALVEDPNVVQSRVVRSKQIDLKPMDLEEAILQMDLLGHDFFIYVDVEDQTTNVIYRREDGEIGLLEVKES*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0034	persistent	direct	high	548	0.998	GCA_002860865.1_01919
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	39587	40249	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	26128	26790	GCA_002860865_1_17_46	GCA_002860865_1_17_46	-	88297	.	COG1040	Predicted amidophosphoribosyltransferases [General function prediction only]. 	MKCLLCGQTMKSVLTFSSLLLLTNDASCLCLDCDSTFERNGEEYCPNCMKTGLSTKCQDCQFWCKEGVEVSHRAIFTYNQAMKDFFSRYKFDGDFLLRKVFASVLSEELKKYKEYQFVVIPLSPERLLERGFNQVEGLVDAAGFAYLDLLEKIEERASSSKSRSERLETEFPFFIKSGVTIPKKILLIDDIYTTGTTINRVKRLLEEAGAEDVKTFSLVR*	mmseqs_cdd	nonviral_gene	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0035	persistent	direct	high	662	0.998	GCA_002860865.1_01920
GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote	cenote	CDS	40246	41544	GCA_002860865.1	PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865.1_PKIE01000007.1	GCA_002860865.1|PKIE01000007.1	GCA_002860865_1_17	GCA_002860865_1_17@C1	26787	28085	GCA_002860865_1_17_47	GCA_002860865_1_17_47	-	88297	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MKVNPNYLGRLFTENELTEEERQLAEKLPAMRKEKGKLFCQRCDSVILEEWYLPIGAYYCRECLLMKRVRSDQALYYFPQENFPKQEILKWRGQLTPFQEKVSEGLIRAVDKQEPTLVHAVTGAGKTEMIYQVVAKVINAGGAVCLASPRIDVCLELYKRLQDDFACEIALLHGESEPYFRTPLVVATTHQLLKFYQAFDLLIVDEVDAFPYVDNPTLYHAVKNSVKENGLRIFLTATSTEELDRKVRIGELKRLSLPRRFHGNPLIIPKPVWLSDFNRYLDKNRLSPKLKSYIEKQRKTGYPLLIFASEIKKGGQLKEILQEQFPNEKIGFVSSITENRLEQVQAFRDRELTILISTTILERGVTFPCVDVFVVEANHRMFTKSSLIQIGGRVGRSMDRPTGDLLFFHDGLNASIKKAIMEIQQMNKETGL*	common_virus_hmm	common_virus	C1	28085	13460	41545	GCA_002860865.1|PKIE01000007.1@region_13461_41545@tool_cenote_CDS_0036	persistent	direct	high	1298	0.999	GCA_002860865.1_01921
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	tRNA	297	370	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	298	371	tRNA-Asn	tRNA-Asn	+	216651	.	tRNAscan-SE score: 70.2	Asn	NA	tRNAscan-SE	.	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	tRNA	20704	20794	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	20705	20795	tRNA-Ser	tRNA-Ser	+	216651	.	tRNAscan-SE score: 68.1	Ser	NA	tRNAscan-SE	.	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote	cenote	tRNA	21042	21114	GCA_002860865.1	PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865.1_PKIE01000003.1	GCA_002860865.1|PKIE01000003.1	GCA_002860865_1_13	GCA_002860865_1_13@C0	21043	21115	tRNA-Lys	tRNA-Lys	+	216651	.	tRNAscan-SE score: 60.3	Lys	NA	tRNAscan-SE	.	C0	55213	0	55213	GCA_002860865.1|PKIE01000003.1@region_1_55213@tool_cenote_tRNA_0003	.	.	.	.	.	.