core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	100824	101360	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	1	537	GCA_002879755_1_6_87	GCA_002879755_1_6_87	+	284306	.	COG0250	Transcription antitermination factor NusG [Transcription]. 	MDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQEFDIHVKVGDTVRIIDGAFADYTGKITEIDNSKVKMIISMFGNDTVAEVNLSQIAEL*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0001	persistent	direct	high	536	0.998	GCA_002879755.1_01242
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	101568	102353	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	745	1530	GCA_002879755_1_6_88	GCA_002879755_1_6_88	+	284306	.	.	hypothetical protein	MKTIFENQEVKLNRKNGSTVIVRNDGFSYLDAKSEKKNLNISFDKVSTILSLRYCNSNSSYNLIFRDQNGKNMAEFDTDTTIYNNGHNILETKAILLAFAASKLTKDFPNNLRDLDIILAFSMKEKEIRIASGIIYGSKHKISIEDIRRVQCVTNGTISNLALYKSDKKTFWDIPDMKVPCNEITLPLFEAIVTENIGKGIDFSRGNGFDQKTSEFMIIRYMDANFFVNSDGTLDKEWQKQIYDRMSAYKYDLATLLEGVL*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0002	persistent	direct	high	785	0.999	GCA_002879755.1_01243
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	102695	103765	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	1872	2942	GCA_002879755_1_6_89	GCA_002879755_1_6_89	-	284306	.	PDB:1Z19_B	Integrase	MASIRKRGKYFEYRVVYHDSLGERHEASCGGFKTKAQARAAGQKREVELRNSPMSNNEVTMLDYYKAWAQLYKKPYIKKKTWNSYKQTKNHIIKYFGQIKLKDMTPVRYQEFLNEFGAKYAQDTIERTHYHIKSAVKIAVRDQLIPSNFTEGAVVKSQKEKKPESESYLEEDEYFYVISKTQENPQYISHMTLYILAISGMRFAEAMGLTWDDIDFKNQVFRVENTWDYSDTEDFSETKNEQSIREIPFNDNVAKVLKNYKENYWRENKQGRVLFGASNRATNTALKRMVKREVHPHTLRHTYASYLIFKEVPVASISKLLGHKSILITLKVYAHQFEKMKEKHHSEVRNILSEIH*	common_virus_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0003	shell	direct	high	1070	0.999	GCA_002879755.1_01244
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	104097	105338	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	3274	4515	GCA_002879755_1_6_90	GCA_002879755_1_6_90	-	284306	.	COG3177	Fic family protein  [Transcription]. 	MEYRSLKKIYYSDRNTYEIEYLQRLNGYGTTKTAMFPYLMKKNTFSTSQYPLFVVPLLDIQFLSQKIIELSVEITKLANALPDVAHQQFYNEQLFNAIISTNEIEGIGTTRKDVAAAIEALNKNKKGVLKHRSTVRMYLDILSEDYLHITELSHIREIYDGLTNGEIDTEDQLDGELFRKDSVSIVNNKTGKIEHIAPHSESKIKDMLLSWIDFINSPSIPFLIKASLAHYFFENIHPFYDGNGRTGRYILSKYLSRRLDKFSGLIISKKINEDKDKYYKAFSETGDSLNRADGTQFVHTILSFIIKGQSEIIETLSDKQDMLYYYHDKLKNSDFTEVERTILFLLVQSQLFVSDFEASITDNELLELLSHTEYSQRSIKQTIKNLEKKAVLIKVAKRPLKHSIVEEFFDYEK*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0004	cloud	direct	high	1241	0.999	GCA_002879755.1_01245
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	105484	106224	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	4661	5401	GCA_002879755_1_6_91	GCA_002879755_1_6_91	-	284306	.	PDB:2FJR_A	Repressor-protein-CI	MELNIYIGQKIKEFRTKEKMTQSDLAKVLDTTKQTISRYEKGDRKAGQDTLFTLCDIFNVSIDDFFPPIQSPDASNELVQAINDTVIQLTPPNQKIVLRTSEDLLEGQKTRGEKITEISEPLTEYHVFEKLAAGNGYNYMEDRNYDVVFFNKDIDHDFASWVYGDSMEPKFLDGSVALIKDTGFDYDGAIYAVDWDGQSYIKKVYKEKDGLRLVSINDKYDDKFAKWEEEPRIIGKVVGNFMPMER*	common_virus_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0005	cloud	direct	high	740	0.999	GCA_002879755.1_01246
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	106393	106506	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	5570	5683	GCA_002879755_1_6_92	GCA_002879755_1_6_92	+	284306	.	.	hypothetical protein	MLKRRRKRKDPWLTQPRATVIAAIIALIAVILQLLFK*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	106690	106857	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	5867	6034	GCA_002879755_1_6_93	GCA_002879755_1_6_93	+	284306	.	.	hypothetical protein	MFFVLIIITNILITFIILRIYSYYLAKELDKMENRILYLQLKTILQKDSPSVVKE*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0007	cloud	direct	high	167	0.994	GCA_002879755.1_01247
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	106806	107597	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	5983	6774	GCA_002879755_1_6_94	GCA_002879755_1_6_94	-	284306	.	PF14337.6	Domain of unknown function (DUF4393)	MTEDNSKNDLLNPLPISKDTGDALFKPAATSIGEASKTLLDGVFHLAFDPIRKFNIQRESDLERFRLEIQASAQAIPNEFYDNSKIGLVLKSIEDSKYQLNNDEIRAMFTRLIITAMDSRSNSNISPKYSSIVSEMTPEEARLLKEIYSNTASLVPFASLKMENKDGSSRDLDQYFLLFDNYSDNNKMLELSLLESSNLINFHKDTKLVHPHFTNIITSFRKSFPENLNTLFPNFSDDEEVIFEHSYYSLTTLGESFCKIVFS*	hhsuite_tools	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0008	cloud	direct	high	791	0.999	GCA_002879755.1_01248
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	107770	107955	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	6947	7132	GCA_002879755_1_6_95	GCA_002879755_1_6_95	+	284306	.	PFAM:PF13744.5	transcriptional-repressor	MWKKIKAVMERKGMTMYAVSKKAGIDQNVLINLKTGRTKRVYFDNMQKIADALNVSLDEFR*	phrogs_hmm	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0009	cloud	direct	high	185	0.995	GCA_002879755.1_01249
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	107967	108107	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	7144	7284	GCA_002879755_1_6_96	GCA_002879755_1_6_96	+	284306	.	.	hypothetical protein	MDTIAIRENSIRINNQKINGVQAIKIKSTAEKGYAEVYIKLLAKLV*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0010	cloud	direct	high	140	0.993	GCA_002879755.1_01250
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	108087	108461	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	7264	7638	GCA_002879755_1_6_97	GCA_002879755_1_6_97	-	284306	.	pfam10711	Hypothetical protein (DUF2513). This family is found in bacteria. The function is not known.	MRLNPDCIRDILLIVEKYATYSNDVEQEIVFQELEDTYNHEEILYHIRQCEASGLFLKVQYFFGGFSIVDLSPEGHQFVNDIRQDTNWNRTKEVAKNVGSTSLDVLKEISVQVISNLISNQFSK*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0011	cloud	direct	high	374	0.997	GCA_002879755.1_01251
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	108520	108738	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	7697	7915	GCA_002879755_1_6_98	GCA_002879755_1_6_98	+	284306	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MQIKLYELRKKAGLNQADLAKKIGISVSQYGKKERGQQEFTQDEMFLLSNFFNKSISDIFLPRKSPKREHKI*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0012	cloud	direct	high	218	0.995	GCA_002879755.1_01252
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	108885	109082	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	8062	8259	GCA_002879755_1_6_99	GCA_002879755_1_6_99	+	284306	.	.	hypothetical protein	MNNVAVNVVRIEPDAYDAAVKFANANDLKISKVISMFVRYGVENVELKEVDVRTEKFCIGDQVIN*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0013	cloud	direct	high	197	0.995	GCA_002879755.1_01253
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	109091	109453	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	8268	8630	GCA_002879755_1_6_100	GCA_002879755_1_6_100	+	284306	.	.	hypothetical protein	MVVSRDMTELEIKVLNGIKNGASFDLPIQASELRISLGLSKRMLEEVIESLRVNFRQPIIAKRIQPSGYYLPRNEEERQAGLAPYKRQIATEQKNLAAVMAVNLDEFWQRKKPDGNQAQK*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0014	shell	direct	high	362	0.997	GCA_002879755.1_01254
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	109475	109759	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	8652	8936	GCA_002879755_1_6_101	GCA_002879755_1_6_101	+	284306	.	PFAM:PF09035.9	Excisionase	MNDLMNQMLDQFEAGLMDRALKVMHVVTDEKRRYPMELNKSQCSEMLLGTKDTGTFDARFNCHKDFPRIEGKRDKFPRDEVIDWYHRNWMKTGG*	common_virus_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0015	shell	direct	high	284	0.996	GCA_002879755.1_01255
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	109763	110209	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	8940	9386	GCA_002879755_1_6_102	GCA_002879755_1_6_102	+	284306	.	.	hypothetical protein	MPNWAKGTLKLRGRRENITSALKDMLLNANVSFEGGCDDDLLVFNRTAHYFYINNTRRAFIETNQVEVWLEEDFCIVELDKFKQAWAVIPENFKEISKKHDVDIKIFAFEMGMEFTQEIEICKGKIIKNNCNEFDNYQWDVPFSNLGG*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0016	cloud	direct	high	446	0.998	GCA_002879755.1_01256
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	110212	110436	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	9389	9613	GCA_002879755_1_6_103	GCA_002879755_1_6_103	+	284306	.	.	hypothetical protein	MQNQEQMRLIMNWERDHYRLGTNYKNKLAKRSVEAVKLELADLSREWDSVTFSVEPKGAMKIEGDKVTIFRKRG*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0017	shell	direct	high	224	0.996	GCA_002879755.1_01257
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	110438	111169	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	9615	10346	GCA_002879755_1_6_104	GCA_002879755_1_6_104	+	284306	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MTEFKIGDKVWVKGVINQIDKGNVWDLYISTRENGVWIDSCLDECIPQNDTDEKPRYLRNVLARLRELPEHDRKVWMDEIMHEFANDYGSVKYTLGYEQGKFDGAVEAGKSKVVIPQFVADWIDYCKENHFTITGAFDPVSEYGIGIAGTFKGSVYKCTRWALDNQNLFARAWLDGYEVEQEKRYVVTDGNHLYFKECQKDVEIVILADKMPGTMNYVKKFDSKDEAQKVADVLGWKVQEVKI*	mmseqs_cdd	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0018	cloud	direct	high	731	0.999	GCA_002879755.1_01258
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	111166	111609	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	10343	10786	GCA_002879755_1_6_105	GCA_002879755_1_6_105	+	284306	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPKFRGRSTVEDDKGKWVYGHLLIDDNRALIINGIIEANDEYVSLEDWCDIDMKTIGQSTGLKDKNGVEIFEGDIIDTTDYEGGLASVGNPFVTIERDVYGFIVTGDFPNSPITIKDFEDGRKFAGVKVSIVGNIYENPELVEGNV*	mmseqs_cdd	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0019	cloud	direct	high	443	0.998	GCA_002879755.1_01259
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	111606	111914	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	10783	11091	GCA_002879755_1_6_106	GCA_002879755_1_6_106	+	284306	.	.	hypothetical protein	MTLKDKIENLEALHAVQKRNLANTQLWLVFVSFIMFLLVIGMIAGYGKQQTQIKDLQTELERMTNEQKNVNQRQDVMINKFNQMYYEYQHKRITEKDNFLGG*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0020	shell	direct	high	308	0.997	GCA_002879755.1_01260
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	111917	112183	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	11094	11360	GCA_002879755_1_6_107	GCA_002879755_1_6_107	+	284306	.	.	hypothetical protein	MSKIIDRKPFRINFKNKDQTIFAVIEGVLCIFFRNDWGWLNVPDEVYNKYWSYIKNKGITYISDEELQRLSQKITNGVELINIRESEK*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0021	cloud	direct	high	266	0.996	GCA_002879755.1_01261
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	112183	112416	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	11360	11593	GCA_002879755_1_6_108	GCA_002879755_1_6_108	+	284306	.	.	hypothetical protein	MSEILGAVLTLVLVFFLGAFINHLDWRKERKRLDQQAKENERIELEAMYVVCAIEHDRRERMRKLAEARKKSPGWNY*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0022	shell	direct	high	233	0.996	GCA_002879755.1_01262
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	112431	112799	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	11608	11976	GCA_002879755_1_6_109	GCA_002879755_1_6_109	+	284306	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGTLIGITGRIQTRTYENQQGQHVYVMEVVADNFQILQNRNKAANADSLYGEEPTY*	common_virus_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0023	persistent	direct	high	368	0.997	GCA_002879755.1_01263
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	112817	113065	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	11994	12242	GCA_002879755_1_6_110	GCA_002879755_1_6_110	+	284306	.	.	hypothetical protein	MRENGKTYNRFITGLKAMIEHLEFLEDEVRRCYHDMEEYEAKIDLLETQKMDLVETLANKTWQDMRQTAFKRRQARKWRAKA*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0024	cloud	direct	high	248	0.996	GCA_002879755.1_01264
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	113062	113811	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	12239	12988	GCA_002879755_1_6_111	GCA_002879755_1_6_111	+	284306	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MKCELFHDNFQNYKRYGIPKAQLVIADIPYNLGENAYASSPEWYVDGDNKNGESDKAKSTFFNTDVNFNIAEFMHFCSKMLIKEPKEKGKAPCMIVFCAHQQQQMVIDLAKRYGFQKYIPIVFIKKSSPQVLKANMKIVGAVEYALVLYRDKLPKFNNDGQMVLNHFPWIVDQSYPKIHKTQKPVPVLKRLIEIYTDKGDVVIDPCAGSGATLRAALELERQAYGFEIDRFFYKDAKEKMLTSFQASLF*	common_virus_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0025	cloud	direct	high	749	0.999	GCA_002879755.1_01265
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	113884	114819	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	13061	13996	GCA_002879755_1_6_112	GCA_002879755_1_6_112	+	284306	.	PFAM:PF09681.9	replisome-organiser	MSEIKWIKITTDIFDDEKIRLIDALPEHDAILVIWFKILTLAGRQGGNGLLMMNNKVHYTDEMLAAIFNRPITTIRLALQTFEQFGMIEIINGIISLPNWEKHQNVDGMEKAKEQTRKRVARYREKQKQLLENGNVTCNVTVTPCNATDIDIEIDRDREKDKDKDNIVVIDKQNFIQEIEANLGRGLVKFEFDMINDYLLNQKVSTELFLEAVKIAVANNVRKFNYIARILDNWINQGIRTPEQAYQAQRDFQAKKNNKVMVKNQKAGNNPDWSNPDYKNETSPEKQAELEKQKQELLKRLEKKDGNSKKV*	rep_hall_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0026	cloud	direct	high	935	0.999	GCA_002879755.1_01266
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	114797	114988	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	13974	14165	GCA_002879755_1_6_113	GCA_002879755_1_6_113	+	284306	.	.	hypothetical protein	MAIAKKCDRCGKFHEIYNKNDDSSNINSLVTANADEYNKRYTQKLINLCPDCKDSFFNWLKKR*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0027	cloud	direct	high	191	0.995	GCA_002879755.1_01267
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	114993	115430	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	14170	14607	GCA_002879755_1_6_114	GCA_002879755_1_6_114	+	284306	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MPFFPEINEVKTKENARKILRGYPRWRRVANDMNGQRVTTIYSFTPRNPNFTNNSQVEKLAIRKVDAEIELDAIEQAVSNLHNPFYRRILFEKYLKSTPEKDFSIYQNLAISESSYYDLLDKALIAFAEIYRNGEQVAMSGENPE*	mmseqs_cdd	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0028	cloud	direct	high	437	0.998	GCA_002879755.1_01268
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	115538	116104	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	14715	15281	GCA_002879755_1_6_115	GCA_002879755_1_6_115	+	284306	.	CDD:cd01192	site-specific-tyrosine-recombinase	MRRVEPIRDVDDIQRLKDYLKDRNERDYMLIVTGLYSGMRISDIIPLQVKQVTGEHIEIKERKTGKTKRFAINPELRRALNNYIKNNDLKGYDFLFQSRKRKRVDGVRITHIGRVAAYQIIKSAAESIGLQNIGTHSLRKTFGYHHYKKNQNVAILMEIFNHSSPDITLRYIGYKQDELDSSMIDFSY*	common_virus_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0029	cloud	direct	high	566	0.998	GCA_002879755.1_01269
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	116282	116617	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	15459	15794	GCA_002879755_1_6_116	GCA_002879755_1_6_116	+	284306	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MEMRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKSLRYPHPLSPVIDHIIPVNKNGHPSDIANLQLAHWQCNRQKSDKLYAEERAAGSVVIGNRNLPQSINWTSYRS*	mmseqs_cdd	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0030	cloud	direct	high	335	0.997	GCA_002879755.1_01270
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	116721	117992	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	15898	17169	GCA_002879755_1_6_117	GCA_002879755_1_6_117	+	284306	.	PDB:2JES_G	Portal-Protein	MSLKGMSYLRKKLLNYKLRVDMRYKQYAMKYNDISVGITIPAEVRMKYRSVLGWAAKGVDSLADRLVFREFANDDFEANEIFNQNNPDVFFDSAVLSALIGSCCFVYISQGATEIPRLQVIEASNATGVLDPITGLLTEGYAVLQRDDYGNPLLEAYFTEDMTWYYPKNEKPYSIHNPAGVPLLVPVIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERADVTAEFYSYPQKYILGMDPSADAMDKWKATVSSLLRIDKDEDGDKPTVGQFTTSSMTPFTEQLKTAAAGFAGEMGLTMDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVAVCLRDEFHYLRSQFVNTNIKWEPLFEADASTLTMIGDGAIKLNQAIPGFLDGEAIRDLTGVKGSGNVAPALPSEKEAVDG*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0031	cloud	direct	moderate	1208	0.95	GCA_002879755.1_01271
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	117985	119379	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	17162	18556	GCA_002879755_1_6_118	GCA_002879755_1_6_118	+	284306	.	PFAM:PF06152.10	minor-head-protein	MDKDIFPELIKSIQDYFERAYGKSELVRKSFEALKSKKATYTTVNDFAIEIGEILSKALGASLSADKLPDGKLYYNIAKRLLEDTLGRNYGLVSSYASDVQKQLNERANIHLKTQIPALNQDRIDGIVNRVSSEQDFDDIKWILQEPIVNFTQSIVDDSIEKNAEFHHKAGLQPEIVRKSVAKCCDWCQEVQGIYKYPRVPKDIYRRHQRCRCIVDYDPKNGKVQDVWSKIWRKQKDSDKIKERKGLNKKENISVVRKSALQHGIKVNPIKRSKVKKTEEAIIKAVGGGDQTKGSCSSLALAYIGNKAGFDVLDYRDGKSRTFFASMLNIKNISELPNVHSHVVADTNDFTAVKKLIGQMQDDKEYYLATGKHAAIVRKKERRFQYLELQAPFEGNGFKPITNAVLKERFGCQRSHSVYGQKLQVPNVLIDSDSLGENEEFQKILGFINTKKGQQNKGDKGYVK*	phrogs_hmm	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0032	cloud	direct	high	1394	0.999	GCA_002879755.1_01272
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	119369	119668	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	18546	18845	GCA_002879755_1_6_119	GCA_002879755_1_6_119	+	284306	.	.	hypothetical protein	MSNNDDFLEELSELANQEDDRIWSESHLDGYSDFYKENEASKVWWIDKLDVIGEHLFSFDQKKIYNLFVDYPHNMMDKEVEIFDKENPYWKEFLSNRKK*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0033	cloud	direct	high	299	0.997	GCA_002879755.1_01273
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	119776	121194	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	18953	20371	GCA_002879755_1_6_120	GCA_002879755_1_6_120	+	284306	.	PFAM:PF03354.14	Large-Terminase	MARTKKKLGNQNPTQSVILPYTKKKSLYKEAIDIYERTGLSSYPWQQNLLKAIMAVDKTGVWVHQKFGYSIPRRNGKSEILYILELWGLEHGLNMLHTAHRISTSHSSFEKVKRYLEKMGYEDGEDFNSIRAKGQERIELYKSGGVVQFRTRTSNGGLGEGFDLLIIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTPVSSGTVFTKYREACLFGKGKYSGWAEWSVNEEKEIDDVEAWYNSNPSMGFHLNERKIEAELGEDKLDHNVQRLGFWPTYNQKSAISETEWNALKVEEIPKLSGRLFVGIKYGQDGTNVSMSIAVRTADKRIFIETIDCQSVRNGNHWIVAFLKQADVSQIVVDGASGQKVLDDELKDYKIKNVILPTVKEIITANSLWEQGIYQHTICHNGQPSLAKVATNCDKRNIGSNGGFGYRSHFSDMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0034	cloud	direct	high	1418	0.999	GCA_002879755.1_01274
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	121270	121734	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	20447	20911	GCA_002879755_1_6_121	GCA_002879755_1_6_121	+	284306	.	PDB:6B0X_d	Major-Capsid-protein	MRMSEFKAITTQEEFDAAIKSRLVREKEKYSDYEQLKSRVAELETENGGLKSSIEASNQSKADADKQVADLQSQIAGFETEKLRTRVALEHGLPLDLAARLQGDDEEALKADAEKLAGFMKIKKPVPPLKNNEPNLGNDEDAALKGMLRNMRGE*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0035	cloud	direct	moderate	458	0.985	GCA_002879755.1_01275
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	121739	122629	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	20916	21806	GCA_002879755_1_6_122	GCA_002879755_1_6_122	+	284306	.	PDB:3JB5_B	Major-Capsid-protein	MATLQSGDMFPVQTVQDIFSKVKGHSTLAKLTTQEPIPFTGTETFVFNLEGNAEIIGEGNPSSAGNATMKQKVIKPVLITYQARISEEFVHCSEEKQLSYLKSFIDGLAKKVAQAIDIASFHGLEPKSMTDASFKATNSFDGLITGNVVTFEADKIDENIDAAVATITANDCEVNGIALSPAAGAALGKIKVNGVVQYPEYRFGQNPDSFYGMKSDVNKTLTTVASTAKKDHVIVGDFENAVKWGYAENIPLEIIEYGDPDGAGRDLKRYREVCLRTEVYAGWGILDEQAFARVEA*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0036	cloud	direct	high	890	0.999	GCA_002879755.1_01276
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	122631	122837	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	21808	22014	GCA_002879755_1_6_123	GCA_002879755_1_6_123	+	284306	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MEYINKETLASIETDCELGGDWVPASELKEDYKLTVPEIKSKLDELGIEYDSKAVKSDLIALLEQHEG*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0037	cloud	direct	high	206	0.995	GCA_002879755.1_01277
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	122843	123238	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	22020	22415	GCA_002879755_1_6_124	GCA_002879755_1_6_124	+	284306	.	PFAM:PF09355.9	head-to-tail-adaptor	MKNFATVDELQELWRPLKLDEQKRAEALLKVVSASLRVEAEKVGKDLDKLFVANESYACVVKSVVVDVVARTLMTSTDQEPMTQVSEGALGYTWSGSYLVPGGGLFIKDSELKRLGLKKQRYGVIDIYGTD*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0038	cloud	direct	high	395	0.997	GCA_002879755.1_01278
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	123225	123566	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	22402	22743	GCA_002879755_1_6_125	GCA_002879755_1_6_125	+	284306	.	PFAM:PF10665.8	Minor-capsid-protein	MARIKGIPVVLIDKVKTGQDDFGHSIFEDKEIEVENVLVSPATSEDITTQLNLTGRKADYTLAIPKGDTHDWENKEVRFFGKRWQVFGLPLEGIEDLIPLDWNKKVTVERYEI*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0039	cloud	direct	high	341	0.997	GCA_002879755.1_01279
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	123556	123783	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	22733	22960	GCA_002879755_1_6_126	GCA_002879755_1_6_126	+	284306	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MKFKLNRAGVADLMKSGAMQTVLNKHASNIKNRCGDGYEQDVYVGRNRANAMVSAKTVKAKKDNLKNNTLLKAVR*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0040	cloud	direct	high	227	0.996	GCA_002879755.1_01280
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	123784	124119	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	22961	23296	GCA_002879755_1_6_127	GCA_002879755_1_6_127	+	284306	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGHLDVPSFFEHETKMPDSFILIEKTSGSERDHSKSATFAFQSYASSMQKAAELNEKVKEVVKEMAKLNSISGVHLNSDYNYTDTETKRYRYQAVFDINYF*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0041	cloud	direct	high	335	0.997	GCA_002879755.1_01281
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	124135	124686	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	23312	23863	GCA_002879755_1_6_128	GCA_002879755_1_6_128	+	284306	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MSKSSNVTTAKPKVGGAIYSAPLGTELPTDATTALNAAFKSLGYISEDGMTNTNSPESEDIKAWGGDVVNSSQTEKKDTFGFTLIEALNVEVLKEVYGSENVSGDLSTGIEVKANSKELKDHCLVAEIVMKNGVLKRIVVPQGKVTEIGEISYKDGETVGYQTTVTAFPDKDQNTHYEYIKGA*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0042	cloud	direct	high	551	0.998	GCA_002879755.1_01282
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	124689	125027	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	23866	24204	GCA_002879755_1_6_129	GCA_002879755_1_6_129	+	284306	.	.	hypothetical protein	MSKSKKNKVKTPSKQVTKMNLPELNSNVIKGTTSTGFKFEVLKERLANYELVEAIAEVDENPLVLPKVVKNLLGPQAEDLKEHVRDENGLVPLNRLMAEIEEIFNSKTSLKN*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0043	cloud	direct	high	338	0.997	GCA_002879755.1_01283
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	125042	125416	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	24219	24593	GCA_002879755_1_6_130	GCA_002879755_1_6_130	+	284306	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIKADENALICDLAETYHIYDYRQLPALKVAVFSIGLRDDSRIKMKLSNQKVSTETLLLAGIFDRLSILAWFKTADGQKGTNRPESIVEQLTAEPKERKEMVFTSGEEFERARKEILEKIGGEH*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0044	cloud	direct	high	374	0.997	GCA_002879755.1_01284
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	125416	128490	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	24593	27667	GCA_002879755_1_6_131	GCA_002879755_1_6_131	+	284306	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGQAYVQIMPSAKGISGSIQSALAPEATAAGNSAGSSIGSTLVKAATGIIAAAGIGRAFSAAINEGAALQQSLGGIETLFKGSADKVKAYANEAYRTTGLSANTYMENVTGFSASLLQSLGGDTNKAAEIANMAMVDMSDNANKMGTSMDRIQDAYQGFAKQNYTMLDNLKLGYGGTKTEMERLLADATKLTGVKYDINNLSDVYQAIHAIQGKLDITGTTAKEAATTFSGSFASMKAAAQNVLGKLALGEDIMPSLKALAETTSTFLFKNFIPMVGNILRGLPTVIGAVLKEGIAAIFGDGIAKSITDKIYDIYTNVSGVLNALSDMIFGSGDKADNKDFLKSYLGIDEKTASSIVNIGENIRVTFENIGSTIGNIAGIVSNFVSDLLGIAGSKKGVNAIGSAFESVTDFIKSASEKIKEFTGWLKNSPAALDSLKGAVVGITTAWTAYKAVTSLLRGVEAVRNATLAVTNGLMLAQFVRTGALTAAEAANAAATTGASGAFGIFNAVLSANPIGIVVTAIGALVAGLTWFFTKTKTGQKVWAGFVSWIKNAWQGIADFFVGIWSGISDGAKNLWNGVTDTWNAVVDTIKNAWNGIVEFFSNLWSGITSGVSAAWTAITQTIMTIVQPFIDGFINIWNGIKDGLSQMWEGVKMIFQGAWDFIKSIVLGAVLIVLDIITGNFGKLGEDLGLIWQGISDAVSTIWEGIKTYFMGVVSAIVGYGQSVFENFSNALAAIWEFIKSAASVAWEWIKTTISNLITGLVQGAQNILNGFMSFLSSLWNAITSVAVGAWNGLKSSVQAIINGIVQGAQNAWNSMKQGVSNLVSGIANIFNGLRNINLWSAGRAILDGFLGGLKSAWQGVTDFVSGIAGWIRDHKGPIEYDRKLLIPAGRAIMNGLDEGLRNQFKSVKSTVGNMAGEITDSLEDQPLSIGLSGFESVNPQMDVSNAILTTKMANVAQTQSREIELLSIIAKLANRPTIVSQELDKREISRIIAEPVAEEQARKQAILNAVDGLGWQMN*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0045	cloud	direct	high	3074	1.0	GCA_002879755.1_01285
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	128475	129998	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	27652	29175	GCA_002879755_1_6_132	GCA_002879755_1_6_132	+	284306	.	PDB:5LY8_A	Distal-Tail-protein	MANELIKVYFNDVELTKWITVLDGFTALGGADYDPTFHNYPILNGSEFIKTRKKLKKIPVPFYVKYEGVADYDALQTSLNVDEPKKLTFSHLPDRVFYAIPSGDLDFKEIKFSGKGTINFSIVDGLAHSKNPRYFEFKKNEQGILEAEIENNGSEEIPVNYRIKLKRESGFVGITSRYGAMQFGKIEETDSVEDKKNVLLSANGTGDFSNWTDGTVFYENQNKKVVTKMTADTNLGGRLGVLSADFTNTADGAYFGAVKELNLSQQAKDWYIWARAWFETGYVSQTGAWCLSVVDSDNHFIAGMAIEKSERTRNKALVVFLMGDGAGGSRVVKSIEFSPTLWVKDNPYSLEGKDQNRNMFDLRKEGDKITYFWYGSYHSFFESKIKDKQAAKVQFFVGQYKGRNSTINELVTHHYLNDFAIYKLNVPYWRDVPNRYPTGAELFIDSTGEVNPEEKGRLYVNNLLAPDDEILGTDYFKVPPGKTKVQLLVSSFAEVESARAEIEEAWI*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0046	cloud	direct	high	1523	0.999	GCA_002879755.1_01286
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	129998	134338	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	29175	33515	GCA_002879755_1_6_133	GCA_002879755_1_6_133	+	284306	.	PDB:3GUD_A	Neck-appendage-protein	MKRNVRIAIRDTTDTHVVGFFDNKSGIKYNAANLTQFLKGSCSVLVLAYHSKKMVAQSGQKLAFRFKDKDFWLNINSVKKTGYNIELTAYSLSLEANKEKRGPHKPASAMTIKQYIDYYDSENSFVIGINEVADKSLKLEWSGTDTILARLYSVANGFGAELEFVTELNNDYSLKRHIINIYREGNLGKDKTGLPVRVGEKLKVINYSDNMDDFYTGIRRTGKDGLTIAGLNKKIYDDKGNLLFYSSGDTLYAPQARDKYPSIARKTNDGYIVNEDSGTEYANKEALFGYMLSELKKHCELKVDYEVEGAVDGNIGDKKTLIDAQHFDPPLYVQARISEQTESLLETSAVKTSLSNYVRKSSQIANELLQKVEQLALEATPYTIKLATNNGIIFKNNQGQSTVYPTLKKGNKTVECTWQWLVDNQSFGTSATFEVRAAGMSNKLVLTAIALIDGKEVAREQVTFSNVNDGKNGSNGEKGEDGKSLRLFTTQYKYAQKFINQYSADGYTGDWSVIENTAGLKAGDSVQIRVFNTDKQCDSWIVASVSAIMSENRIKTVSKGLIEKGDQGERGPKGATGEKGDKGDPGKPADPAPINQLKQDMELTKKDLSAVKSDLLREKSESSAKIDQVKQDVGAIRNQQTAYEQSNTQNLARITGQLGDKASKSEVKQTADGIREEISHLSTASRNYILNSDMTTATDRTTGTGLPLSSDLIRTLNAERSFTLSVDVVAQNMVAKNDKKRFGISYELKFSDGSNLWTEVFQTSDTALKRISQNFVLPAGKQIVSIAGGLYFQATGQIKLSRPKWGIGHNNKEWIKAVEDTDEQITATRTTFEKTAEGLKTDMAAVKSYVADDGKRREQLEQYTRTETARSAEALRKQASESYVAKSQYSEDVRGVARRFEELNLNGTNLLPNTDFKNLVDVGNQFTVGGKTYKVKTLDKWYSSYNDGIPNPKTNYHGYFNETKFSETVFEFNESNGVREWKGLPIFITNDSRYTVGKYIFSVDVNATGLGTHLEVGFYYYNKAGVRYFHGGLVKKAVTSVNVWSRISLELKINDDVDFSKEMGFYIYGYGFTSNSVLYFKRPKLTNTNWTPSVEDNKKYTETKIAEYKQTVDGQLAAVKQDVNGKVSQAIFEQRANQITQTVQELNDNVVKKNQIRVNENGIVSTAEKVVNGQTLASMIAQHPEWVEIIAKLLKVKADMIVNGAITADKLNVKELSALASDLGKITAGEIEFTARFRNSPSHDTWGTVPGEYNYDATVLINSSGIYSNGKIGRENKEDKTPTITPVSYFKNGELFFANLEAGHSLKYMEMNGIHPFVRGGSSLMYFGKKEDGKDALYITCRNAELYLKSDNYTDWKQSEVNNKVRWKVQGSLVLVDFNLQFDRDGDYHLVDIPKQYVPSNKMFPVQAWSLDRNKDRTAQLNVGGDLHIIGAERGVPYLGQIIWTY*	hallmark_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0047	cloud	direct	high	4340	1.0	GCA_002879755.1_01287
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	134359	134907	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	33536	34084	GCA_002879755_1_6_134	GCA_002879755_1_6_134	+	284306	.	PF07104.11	Protein of unknown function (DUF1366)	MKFRVANKYLREANKTFVAIRCDEPYTAYDRVLEGDRMNDSDEILTDAVLKMVATELDPTGAIAEMQQKLDKTSDATSKNKDSVERTSKLTDVLILLAISIEGGMQQDLYKKVASLLPTLTDGVRYSFGDIVSAPYPYDTNPKYPQGTPVILKFLDNWTHKGQPLQELLQKGACTTIMPKLN*	hhsuite_tools	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0048	shell	direct	high	548	0.998	GCA_002879755.1_01288
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	134919	135332	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	34096	34509	GCA_002879755_1_6_135	GCA_002879755_1_6_135	+	284306	.	PFAM:PF05105.11	Bacteriophage-holin	MPIIDFEWSRVLRGAVDTQDKLIVFTLTLIMGAMVIDFLTGTLAAKINPKIEFKSKEGINGILRKISSIALLAFCIPLSVLLPEGIGLGTLQVLYMGYLFFEMKSILENFEKLGIDTVLFKDFIEALKKYLKEKGEK*	common_virus_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0049	cloud	direct	high	413	0.998	GCA_002879755.1_01289
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	135332	135535	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	34509	34712	GCA_002879755_1_6_136	GCA_002879755_1_6_136	+	284306	.	PFAM:PF16938.4	phage-holin-Dp-1	MNLTNKQYDIAKKVVTVVAPAAITLITGLGALYKFDTTAITGTIALLTTFAGTVLGISSKNYQDKGE*	common_virus_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0050	cloud	direct	high	203	0.995	GCA_002879755.1_01290
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	135538	136353	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	34715	35530	GCA_002879755_1_6_137	GCA_002879755_1_6_137	+	284306	.	PDB:5T1Q_D	Adenosylhomocysteinase	MSRIESSIAEMRRLQAIPVHYDMGDRYGNDADGDGRIEYDCSSSVSQALGLSLSNNTETLKSNLPKINYNCVYDGVDGSIDFEYGDVAIWSPRDGSSSLGAFGHVVIMTGPTTMIHCSYGYDGIVESDYNQIWELNGRPRETVFRENGQAAAPQPAPLANKTQNLKIYRVDDLQFVNGIWQVRCNDLVPVEFDWTDNGIACEDIDLVDENGNLLADQETRVGGLFVINPSKVVSDGEGAYGSGNYYWRNIELVASGRVWLSVWSVDHLLHG*	common_virus_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0051	cloud	direct	high	815	0.999	GCA_002879755.1_01291
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	136535	137497	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	35712	36674	GCA_002879755_1_6_138	GCA_002879755_1_6_138	+	284306	.	COG4823	Abortive infection bacteriophage resistance protein  [Defense mechanisms]. 	MKSKFIHKTFEEQIDLLESRSMLFSNKKSKEKAAHSLSIISYYRIKEFAKPFAVTKKINNKRIIDYQNTKFEIVISRYYQDKNLRLHLLHAIEDIEVALKTRVAYILGKNGLGSYGYLDFSKWCNKEEYCKHYLLYRQNDFKKKLLSTINNSESFEIKEKQKIDKTKFPPVWLMINSLTFGQVVALLELMSVKNLTKISQQFSCSNSELLSWLRCINLVRNICAHNSNIIDLKLTTTPSIKKEWKNFLFEYKSGVYSNRIALPFLIILEMMDQINPKYQFKEIIGSLDKLIRDEATANYYGFKALNTLEKIKQDKKIKKK*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0052	cloud	direct	high	962	0.999	GCA_002879755.1_01292
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	138160	138942	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	37337	38119	GCA_002879755_1_6_139	GCA_002879755_1_6_139	+	284306	.	PRK05299	30S ribosomal protein S2; Provisional	MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKFADQAYDFMRDAAANDAVILFVGTKKQAADAVKDEAERAGQYYINHRWLGGTLTNWETIQKRVARLKEIKRMEEDGIFDVLPKKEVALLNKQRARLEKFLGGIEEMPRIPDVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMADAIIEGRQGEDNVESVEAELAATDTQANSIEEIVEVVEGTNE*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0053	persistent	direct	high	782	0.999	GCA_002879755.1_01294
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	139025	140068	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	38202	39245	GCA_002879755_1_6_140	GCA_002879755_1_6_140	+	284306	.	COG0264	Translation elongation factor EF-Ts [Translation, ribosomal structure and biogenesis]. 	MAEITAKLVKELREKSGAGVMDAKKALVEVDGDIEKAIELLREKGMAKAAKKADRVAAEGLTGVYVSGNIAAIVEVNSETDFVAKNAQFVELVNETAKVIAEGKPANNEEALALIMPSGETLEAAYVSATATIGEKISFRRFAVVEKADDQVFGAYQHNGGRIGVITVLSGSDEDLAKHVAMHVAAMKPSVLSYKELSEEFIHDELAQMNHKIDQDNESRAMVGKPALPHYKFGSKLQLTDEVIAQAEEDIKAGLAAEGKPEKIWDKIIPGKMDRFMLDNTKVDQQYTLLAQVYIMDDSKTVEAFLESQGVTIAGFTRFEVGDGIEKAANDFESEVAATMAAALGQN*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0054	persistent	direct	high	1043	0.999	GCA_002879755.1_01295
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	140145	140495	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	39322	39672	GCA_002879755_1_6_141	GCA_002879755_1_6_141	-	284306	.	.	hypothetical protein	MKMDWFKYTRHVLVWWFSTLFFFTIISANYVDVQVATLVACLFAPFLFEPSSIKPKTKWIIDLAIIVISVFAVLFTQTYRIAFTYSEITYLLISLIILILIDLVISHKGFTKRIVK*	.	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0055	persistent	direct	high	350	0.997	GCA_002879755.1_01296
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	140754	141215	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	39931	40392	GCA_002879755_1_6_142	GCA_002879755_1_6_142	+	284306	.	COG4463	Transcriptional regulator CtsR [Transcription]. 	MSSKNTSDSIEEYIKTLLAQAGIAELKRSEIADVFQVVPSQINYVIKTRFTESRGYIVESKRGGGGYIRIGRIEFSNHHELLCDLLHSVGEQISHQVFTDIIQLLFDEQIMTEREGNLLLATTTDRVLGTNAAQIRARMLKKILQQVDRKGKN*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0056	persistent	direct	high	461	0.998	GCA_002879755.1_01297
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	141219	143648	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	40396	42825	GCA_002879755_1_6_143	GCA_002879755_1_6_143	+	284306	.	PDB:4M4W_K	Replicative-helicase	MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKVYQQEGDFTIWPFSYRMKVLFLTAEQIAGAVHANNLGTEHILLAMLFDQGSLAARILEFIGFSYEDKEGVLRMTDLRKNLEHKASWNKEDLKAIRHLNKSAAATRQTMANMMGMPPATSGGLEDYTRDLTEMAHMGLLEPVIGRDKEISRILQILSRKTKNNPVLVGDAGVGKTALALGLAQRVADGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDSTLDAANILKPALAKGTLRTIGATTQEEYQKYIEKDAALSRRFAKVTIEEPTVADSIAILQGLKKSYEDHHKVVITDSAIETAVKYAHRYLTSKHLPDSAIDLLDEAAARVQNKSPQNHVKAELSAADEALMAGDWNKVDTLLEKESQPIVYKLRVKDEDVLATLSSLSGIPVQKLTQTDAKKYLNLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFLFLGPTGVGKTELAKALAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSEDMQEVVKIMVQPLISSLAEKGIKLKFQPSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLAGELKTGQSLKVGVKAGKLKFEVL*	rep_hall_hmm	common_virus	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0057	persistent	direct	high	2429	1.0	GCA_002879755.1_01298
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	143695	144135	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	42872	43312	GCA_002879755_1_6_144	GCA_002879755_1_6_144	+	284306	.	PRK03624	putative acetyltransferase; Provisional	MNIREMVEADYDQVYQLWLSCAGMGLNHLDDSKEGIAQFLKRNPQTCLVAVENQIIIGAILVGFDGRRAYIYHTAVHPNYRRRGIARQLVETVLTVLDELKIHKVALVVFKRNTEGNRFWETLGFSTREDLIYRNQARTEMVRLDT*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0058	persistent	direct	high	440	0.998	GCA_002879755.1_01299
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	144206	145177	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	43383	44354	GCA_002879755_1_6_145	GCA_002879755_1_6_145	-	284306	.	TIGR00737	putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General]	MTNLNTPFLIGDVKIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNKKTLHMLHIDEEEHPVSIQLFGSDEDSLARAAEFIQENTQTDIVDINMGCPVNKIVKNEAGAKWLKDPEKIYSIINKVRSVLDIPLTVKMRTGWADASLAVENALAAEAAGVAALAMHGRTREQMYTGHADLETLHNVAQALTKIPFIANGDIRTVQDAQQRIEEVGADAVMIGRAAMGNPYLFHQINHYFETGEILPDLSFEDKMQVAYDHLKRLIDLKGEHIAVREFRGLAPHYLRGTAGAAKLRGAIAQANSLVEIEALLQV*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0059	persistent	direct	high	971	0.999	GCA_002879755.1_01300
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	145164	146126	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	44341	45303	GCA_002879755_1_6_146	GCA_002879755_1_6_146	-	284306	.	PRK00114	Hsp33 family molecular chaperone HslO. 	MVRGRTTKSLSYEILIFVPLPFLFYVTIKGMDKIIKTISENGAFRAYVLDSTKTVRTAQEKHQTLASSTVALGRTLIASQILAANEKGDTKITVKVLGTSSLGAIITVADTKGTVKGYVQNSGVDIKKTATGEVLVGPFVGNGEFLVITDYGTGNPYHSMTPLVSGEIGEDLAFYLTESQQTPSAVGLNVLLDTNDKVKVAGGFLLQVLPGAKEEEITHFEKRIQEMPAISTLLESENHIEALLSAIYGNEPYKRLSEEELRFQCDCSKERFLNALSSLPKSDLEEMRDEDHGAEITCQFCQSTYHFDEKDLEELIRDKS*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0060	persistent	direct	high	962	0.999	GCA_002879755.1_01301
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	146245	147516	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	45422	46693	GCA_002879755_1_6_147	GCA_002879755_1_6_147	-	284306	.	PFAM:PF05816.10	tellurite-resistance	MSQEFNFDIDKIANNAISKTDRTTEIIESTETQANGQMNFLEKLTPEQQDAIIAKAPQLVDNFISDQNTLLDFGQAAVEEVNNTVNRILAEQKKLQIPQVDELLKNTNKELNGFVAKYKDTQIAELDKKPNFLEKLFKQSKNTLQEFYFDSQNIEQKMDSMAATVVKQEDLLARNIVSAEMLIEDNTKSIENLVGVISFIEATQKEAGARASTLQNEVAQLDTATLDYQTKSQELARLTEVVNTLEQQHTEYISRLYVAWATTPQMRNLVKVSSDMRQKLGMLRRNTIPTMKLSIAQLGILQQSMKSGQVADAISNANNAALQMLAETSKEVIPQMERISQNPTIAVESVTKLAESLVAQNQGIISAIDKGREKRALLEATVIKSAETINDSVKLRDQKIIQALLDQGKEIQKEVDKPTTSET*	phrogs_hmm	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0061	persistent	direct	high	1271	0.999	GCA_002879755.1_01302
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	147535	148353	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	46712	47530	GCA_002879755_1_6_148	GCA_002879755_1_6_148	-	284306	.	PF10112.9	5-bromo-4-chloroindolyl phosphate hydrolysis protein	MPRRNYNNVRSRRWIGILLILIAVGIIIQYLIPILLSIGIGYGIYYYATHKPKKITEPSASQQIEDLKKEIRAADSRIKQLDNYLKEKSYANYQQLADQLLPQLSYIQGRADTLKKYISPEIYQRIQRKVQNVTTDIHEQLHNLRAQTSESLKPNLEELAPELLETIHNIQIDHEAILKKISQSESNNKEELTAIHQSQMEHYEDILEGYLKIKTSPKDFYNAEERLSSAKAAIEQFDLDLDETLRQLNEADLRDFDISLRILSKKEPNTEL*	hhsuite_tools	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0062	persistent	direct	high	818	0.999	GCA_002879755.1_01303
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	148718	148912	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	47895	48089	GCA_002879755_1_6_149	GCA_002879755_1_6_149	+	284306	.	cd08287	formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family.  The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones.  FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	MANLAMADGPASCTTYDKEVLLKAVLDGQINPGKVFTQSYTLDDIDQAYKDMADRKMIKAMIVM*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0063	shell	direct	high	194	0.995	GCA_002879755.1_01304
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	149073	149630	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	48250	48807	GCA_002879755_1_6_150	GCA_002879755_1_6_150	+	284306	.	PFAM:PF06852.11	acetyltransferase	MSLTSQIITAEFPDLEKVEQLNTEAFPEEERAPLSELLRYGDGEYSHFFAFYDGNEFVGFAFSVYNERAFYISFFAIMPHLRSHGYGGKIIDKLVDFYQRTMVLEVERLDEPCDNLEQRKARMDFYKRNGFRSSHAYLEYDGLSFEILYKGPFFDEEAYQDIFKKIQEDGYFEFEIKHGHGRDWE*	phrogs_hmm	hypothetical_protein	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0064	persistent	direct	high	557	0.998	GCA_002879755.1_01305
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	CDS	149900	150484	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	49077	49661	GCA_002879755_1_6_151	GCA_002879755_1_6_151	-	284306	.	PRK02471	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB. 	MNINHLLEKIAVDVPILQATFGKDKSIVIKPKSTNFGLGISIFQEPTNLDSSQKALEIAFSEDSSVLGEEFIAGTEYCFFVLDGKCEAVLLRLPANVRGDGRHTIRELVATKNANPLRSRDHRSPLERIKLGEIELLMLAQQGYKADDILPKGVQVFLRCNSNISTGGDSVDVTEIMHTSYKELAAEMATAMGA*	mmseqs_cdd	nonviral_gene	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_CDS_0065	persistent	direct	high	584	0.998	GCA_002879755.1_01306
GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote	cenote	tRNA	137792	137863	GCA_002879755.1	PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755.1_PNRP01000003.1	GCA_002879755.1|PNRP01000003.1	GCA_002879755_1_6	GCA_002879755_1_6@C1	36969	37040	tRNA-Cys	tRNA-Cys	-	284306	.	tRNAscan-SE score: 55.6	Cys	NA	tRNAscan-SE	.	C1	49661	100824	150485	GCA_002879755.1|PNRP01000003.1@region_100825_150485@tool_cenote_tRNA_0001	.	.	.	.	.	.