core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	42745	43344	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	1	600	GCA_002901875_1_4_37	GCA_002901875_1_4_37	-	252785	.	.	hypothetical protein	MFVKEEKPVNKIVEILRKTSSHLFKFHGEVAMHLFLNDDFILPSKIDICVERKKLLEIIRVIPEEFTIHYYDNQLYERLRESLSLSDVEHVKVFKNDTEVMTIFVYDVVNDEWLFRLDHHIRLPKNNIYFHSLSWNVDYIKPEIVLMYDLMSEQKYHQFSNYKAVIDSLSYYQFYILKLVVGEQRIKKAIVNSSTKKIS*	.	hypothetical_protein	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0001	persistent	direct	high	599	0.998	GCA_002901875.1_00101
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	43671	44543	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	927	1799	GCA_002901875_1_4_38	GCA_002901875_1_4_38	+	252785	.	.	hypothetical protein	MSLTIILSIIIIILIMAMVLNQKFMKDRVETEEYARNQLISKNSILSEENLSLKNQMLSTNNDVGQHAFKNAKRELRKILNRFKEEGRLRSYTIVPTSNLAVKHPLFEYARSFDFIIITDVGLINVDVKNWNQKTFYHFDVPDQHLEEGQPQYNTEKVVGHYISNRYHSQFKTTRSGVYTFIEILQDNRVIYEFYDHDPYDKAANNAKALKDKIENDYNFKIQSIGVIYFSDGSVNIIEGSDESDKYVDTVSTPISLEKVIEEAIDLSKHPLTDKQIEEISENFKQHMNN*	.	hypothetical_protein	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0002	persistent	direct	high	872	0.999	GCA_002901875.1_00102
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	45279	45800	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	2535	3056	GCA_002901875_1_4_39	GCA_002901875_1_4_39	-	252785	.	PDB:1RKN_A	Thermonuclease	MSSLLVVAMIGILVIIFQFVNHSGPFSGSESQHQSDNSNLNGKDKVYVKRVVDGDTFVAQKNGEEIKVRLIGVDTPETVKPNTPVQPYGKQASNYTKKYLTHQNVYLEYDKEKTDRYGRTLAYVWLKNGDMFNESLVKKGLAREKYFSPNGKYRDTFVNAQEEAKKRKLNIWS*	common_virus_hmm	common_virus	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0003	persistent	direct	high	521	0.998	GCA_002901875.1_00103
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	45980	46168	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	3236	3424	GCA_002901875_1_4_40	GCA_002901875_1_4_40	+	252785	.	.	hypothetical protein	MDTSNENKITIIAVIVAIIVGVVLQIVFKLPLIVSLVGSVFLGMFVGFIVYLIQSFRRKKKN*	.	hypothetical_protein	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0004	persistent	direct	high	188	0.995	GCA_002901875.1_00104
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	46337	46939	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	3593	4195	GCA_002901875_1_4_41	GCA_002901875_1_4_41	-	252785	.	cd19930	phosphoacceptor receiver (REC) domain of DesR and similar proteins. This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MISLVITEDQLMLRKAMVQLIEMHEEMNVIKDFENGVEALEFIENNEPNVAILDIEIPGLTGLEILSYVRKKQLNTRIIIVTTFKRPGYFEKAVANDVDAYVLKERSIDDLIKTIYKVTKGEKEYSPSLMTSLFTESNPLTHKEQVVLREIGNGLSSKEIASKLYLSNGTVRNYTSTIIDKMNSDHRFEAWKKANEKGWI*	mmseqs_cdd	nonviral_gene	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0005	persistent	direct	high	602	0.998	GCA_002901875.1_00105
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	46936	48030	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	4192	5286	GCA_002901875_1_4_42	GCA_002901875_1_4_42	-	252785	.	COG4585	Signal transduction histidine kinase  [Signal transduction mechanisms]. 	MESRSWGVRIGELSTLIYLIFPILAIFVDKRGNFLTYLIVCTIFIISYVTMIIFYKYLSDSILYSLLVIHYLGIFYFVYSVNPMNSLFFFYSAFALPFIFNVRVVSKEFITFLIAMISCLILTYIFNPTFVVPLSAFYLVILIVAVGNFKNRDERIMKAKLEEKNKYINVLIAQQERNRISQDLHDTLGHVFASLTLKSELAVKLIDTNPKEAKNEMQAINQLSTEALNKVRLIIDDLKIQSFEDEISSLEHLLQNANLHFKFNNKSAAKSLNPAKQSILSMIFREAINNVIKHAHATEVIGELKVHEHQIILKIKDNGVGIENEDASNLKSIKERVDYLNGKLIVQSNNGTLIIVEIPRGDLL*	mmseqs_cdd	nonviral_gene	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0006	persistent	direct	high	1094	0.999	GCA_002901875.1_00106
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	48030	48761	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	5286	6017	GCA_002901875_1_4_43	GCA_002901875_1_4_43	-	252785	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MISTYFKIELKIIFRKKLYLVMSIFLPVVFYLLFTSILDMPEEAKLKFYKEYMYSMTVFSLMNFCLLSFPLDLIEERNQGWYKRLMVTPLSSFQYYLVKISKTMCQFLIAITIIFSVAHFYKDVHMTVFQWIFSALTLWIGVSLFLTLGLIIAQLNDIQKASSFANLLNITLAILGGLWFPVYTFPDWLQSISKHMPTYNLKLLAIDLAQNKGVNIEAFGYLVVYCIIFVSIALFMNKKGDVH*	mmseqs_cdd	nonviral_gene	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0007	persistent	direct	high	731	0.999	GCA_002901875.1_00107
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	48758	49633	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	6014	6889	GCA_002901875_1_4_44	GCA_002901875_1_4_44	-	252785	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MIELRHISKSFKEHKVLEDISIDIKNNCCTALIGKNGAGKSTLIDIIVGNNHYDSGQIADKSNLLNRHKMGILFQKTEFPKYIKVCELLHLYQSFYQTFISFHQFKEITQFSDRQMNQFACNLSGGQQRILDFALALVGKPELLILDEPTSAMDVEMRQHFWNVIDKLKMNNTTILYTSHYIEEVERMADQVMMLDKGKIQLDDSPENIKRNQSYSVIRIPCKYQELINQLKHKYEIELIKNRYEIKTTDVSDVLQLLKQYHVNFNKIEILKKSLLEVMFSNDLSKGGNYQ*	mmseqs_cdd	nonviral_gene	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0008	persistent	direct	high	875	0.999	GCA_002901875.1_00108
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	49811	51283	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	7067	8539	GCA_002901875_1_4_45	GCA_002901875_1_4_45	-	252785	.	PDB:2ZE9_A	Phospholipase-D	MNFGFLGTILTILLVVGFITNVVLAFVIIFLERDRRTASSTWAWLFVLFVLPVIGFILYLFLGRTVSKKKMEKNNGDELHAFEDLVQDQIDSFDKHNYGYINDQVIKHRDLIRMLLMKQDAFLTENNKIDLFTDGHKLYEKVLEDIYNAQDYIHLEYYTFELDGLGKRILDALETKLKEGLEVKLLYDDVGSKKVRLSKFKHFRALGGEVEAFFPSKVPLINFRMNNRNHRKIIIIDGQIGYVGGFNVGDDYLGLGKLGYWRDTHTRVQGECIDALQLRFILDWNSQSHRPQFKFDQKYFPKKNGDKGNAAIQIASSGPAFDLHQIEYGYTKMIMSAKKSIYLQSPYFIPDQSYINALKMAANSGVEVNLMIPCKPDHPFVYWATFSNAADLLDSGVNIYTYQNGFIHSKILMIDDEISSIGSANMDFRSFELNFEVNAFIYDEDIAKQLRQAFEKDIEQSKLLTKEVYDKRPLSIKFKEGLAKLISPIL*	common_virus_hmm	common_virus	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0009	persistent	direct	high	1472	0.999	GCA_002901875.1_00109
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	51341	51538	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	8597	8794	GCA_002901875_1_4_46	GCA_002901875_1_4_46	-	252785	.	.	hypothetical protein	MQQIKFKTLTEETLESLEKSVNSFLKSQEGNGYKLLNITIKQIEERAFPHNDEDFNAILTLVTEA*	.	hypothetical_protein	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0010	persistent	direct	high	197	0.995	GCA_002901875.1_00110
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	51852	52877	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	9108	10133	GCA_002901875_1_4_47	GCA_002901875_1_4_47	+	252785	.	COG2008	Threonine aldolase [Amino acid transport and metabolism]. 	MISFENDYLEGAHEKVLNRLVETNRIQAAGYGFDDFSAQAADKIRQRIDCPDATIRFLVGGTQTNQVVINSMLDSYEGVISADTGHVAVHEGGAIEFSGHKVLTIPSQEGKITAQDVENYIETFESDFKKEHMVYPGMVYISHPTEYGTLYTKEELQSLSRVCRRHQIPLFMDGARLGYGLMSNQTNVTIEDVAKYCDVFYIGGTKIGALCGEAIVFTKQNEPKNFTTIIKHHGALLAKGRLTGVQFLELFTDDLYFDISRHAIKMAEKVKKGFIDKGYQVYFDSPTNQQFFILSNDKIEELKQKVKFAVWEKYDNQHRVVRFATSWATTEENVNQLLELI*	mmseqs_cdd	nonviral_gene	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0011	persistent	direct	high	1025	0.999	GCA_002901875.1_00111
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	52947	53630	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	10203	10886	GCA_002901875_1_4_48	GCA_002901875_1_4_48	+	252785	.	pfam07553	Host cell surface-exposed lipoprotein. This is a family of lipoproteins that is involved in superinfection exclusion. Proteins in this family have been shown to act at the stage of DNA release from the phage head into the cell.	MQQERQSWYQKSWFIILTLLFIFPLGLFLMWRYAHWKNWLKLTVSSVYIISLVLTLLFQVSLLNENKTNQIEHASTMKEKSNINNVKTTKNKNMEKSTQTDKQNSVNLKQNTKDQNNNANDEAASPTSEQNAAIAQAKSYANTLPISKKSLYKQLTSEYGEKYPADIAQYAVDHISVDYKMNALRLAKSYVKNINISNQALYDQLVSENGEGFTPEEAQYAMNHLDR*	mmseqs_cdd	nonviral_gene	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0012	persistent	direct	high	683	0.999	GCA_002901875.1_00112
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	53881	54264	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	11137	11520	GCA_002901875_1_4_49	GCA_002901875_1_4_49	-	252785	.	PDB:6B0X_d	capsid-scaffolding-protein	MKDAIQEAEKLAKMNKDQKNQYELEKLLKENEELKAEKALSQMKNETRSMLNESGLENFDDQIVNILVNTDAEKTRKNVESFTNLLNQMVKSNVEKALRQDSPVSTQSNKMTKDEESDYLVSGRKCL*	hallmark_hmm	common_virus	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0013	shell	direct	high	383	0.997	GCA_002901875.1_00113
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	54261	54428	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	11517	11684	GCA_002901875_1_4_50	GCA_002901875_1_4_50	-	252785	.	PFAM:PF14265.5	head-scaffolding-protein	MENNQSNITEETKHNDNLETTYEQTQQKEKTFSQEEVSQMIKDRLARKKRNLNNV*	phrogs_hmm	hypothetical_protein	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0014	shell	direct	high	167	0.994	GCA_002901875.1_00114
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	54589	54783	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	11845	12039	GCA_002901875_1_4_51	GCA_002901875_1_4_51	-	252785	.	4A54_A	EDC3, MRNA DECAPPING COMPLEX SUBUNIT	MLIKDAYRKNVIVTLKNNEKFKGFVFDYENPLESDTGNYSLDLETDLGIYSIDESEIKSIKLIS*	hhsuite_tools	hypothetical_protein	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0015	shell	direct	high	194	0.995	GCA_002901875.1_00115
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	54785	55138	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	12041	12394	GCA_002901875_1_4_52	GCA_002901875_1_4_52	-	252785	.	pfam15542	Bacterial toxin 50. A predicted RNase toxin found in bacterial polymorphic toxin systems that is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, and contains two conserved histidine, a serine, two lysine, and a threonine residue and a HxVP motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7, and MuF-type secretion systems.	MIRSGKIKLDINPEKQNRHSLNHSLYLKNKNFALKNNERLPSYTTLSINELNRLVQQYSTSGKILINKNGFNHKKVINFERIIGKAFIDGKYIETTFGKVHYSKTDSHIIPFISKEK*	mmseqs_cdd	nonviral_gene	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0016	shell	direct	high	353	0.997	GCA_002901875.1_00116
GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote	cenote	CDS	55181	55828	GCA_002901875.1	PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875.1_PPQG01000012.1	GCA_002901875.1|PPQG01000012.1	GCA_002901875_1_4	GCA_002901875_1_4@C5	12437	13084	GCA_002901875_1_4_53	GCA_002901875_1_4_53	-	252785	.	PFAM:PF06152.10	minor-capsid-protein	MKVSREKLLKQQLDLIVKDSALDIHDEIENKLVDREVERQAHILGEHVKIDDTEVKAVVNSNFKGVNWSTRLCQDMAVVQKEVEKTTSNVLLRGRHPNEYVAKFKKQTNTTTYNASRLLVTESACVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHSLNGKVFKVKDMMPGVNAPPMHPWCRSTTVTHVGNWRDRFFTERKGKYQTENKES*	hallmark_hmm	common_virus	C5	13084	42745	55829	GCA_002901875.1|PPQG01000012.1@region_42746_55829@tool_cenote_CDS_0017	shell	direct	high	647	0.998	GCA_002901875.1_00117