core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	72981	73412	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	1	432	GCA_002913525_1_1_64	GCA_002913525_1_1_64	+	140829	.	COG1610	Uncharacterized conserved protein YqeY [Function unknown]. 	MSIREQILADIKEAMKAKDEFKRDTLRTLNAALKQVEVDQRIEMTDEVVLPLLQKEIKKRADSVELYLKGAREDLAKKEQSEIELIKAYLPAQLSDDELKEKIKSIIERVGKNLGAVMKMAKDEIGASAEAKRISMIAKELLA*	mmseqs_cdd	nonviral_gene	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0001	persistent	direct	high	431	0.998	GCA_002913525.1_00064
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	73828	74700	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	848	1720	GCA_002913525_1_1_65	GCA_002913525_1_1_65	-	140829	.	PDB:1Z19_B	Integrase	MCLNELFDNYISYYELILSPSTLRSDIATYNKHFKNSLGLRDITEINFIDIQKFCNGLIKQEYKIKTIKNIVAKLKVIFKLGIKLELINKNPCDFIELPKFDNKRYFDYPISIQKRFIKAICENTDDNSDIFFFLLHGRRKNEVLSLKFSDINFKTRTYTIPFKINKAKRDMIYKMSDELYSRLYKRYIVAKEQKRLNDYVFINPMTDDKFKDLRKSWASLLKRNNLPKIRLHDIRHLIGTYSINYLKIPIEQVSFTLGHTNIITTQKYITANVKKSQETIENLLKSISE*	common_virus_hmm	common_virus	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0002	shell	direct	high	872	0.999	GCA_002913525.1_00067
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	74702	76042	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	1722	3062	GCA_002913525_1_1_66	GCA_002913525_1_1_66	-	140829	.	PFAM:PF05840.12	nicking-at-origin-of-replication	MRARNLYGVSPFDVELCQEKLDSQREYMRSFSFVNSLGQVRNLLDISMSANFSPKYYAEVSNRINVFSSFAIDNFQVPVFLTITLNGCFRGALNGDYSKFKPIDYKYLPDEVKYKAKNLASLSISDLIAVLNHQWRLFCRRFKDKFKKSDISYIRCFEPHKKDGVPHIHALFYVPAYTLDFMKRIYMNIFYAPQNLKTDAITSEQEKNGELNGFQTSINNPSGYVMKYIQKTFINLKETQDFDELSAWYVKHKVRRFLSSRTKVPLWVYRKINFISSMQDFYHLNDLTNDPRALIEWNKKDDYIYINLPFNKEEIIYLNGRLEHYIGGRLMNFYDRLKINNKVDYDASDEIKNFGSTLKQRQILKICDELFKTEKRVKPVSKMRDYELVNYYQSLGGDVNVQHLAYVENLMLDRNLDNFTHYHEKHDLNAPDIDSFVDRFLICNEF*	phrogs_hmm	hypothetical_protein	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0003	shell	direct	high	1340	0.999	GCA_002913525.1_00068
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	76271	77413	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	3291	4433	GCA_002913525_1_1_67	GCA_002913525_1_1_67	-	140829	.	PDB:5WQ8_J	Type-II-secretion-system-protein	MKSLIKFLILPCLLLNSLFSAEIYTDLLDFARLTSKANNIAIVTDESIHQGEYYFIYQDEVKITISMFRKMLEAKNLYLYKKDNFYYVSSQKLPDYDLRRIDLKNYVVEDVNKILSQFDLNATYATASNSVFFRADDYIFDQVKDAIAKIDKSLEQVTFKLTITETNLKDIKDLGTNLQGLLKPLNHGDLAYYINLITSPYITNSNVIKNNDSAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSYEYKDIGLKINLKPIILSDHIDFDLHLILEDILSQSSSLTPIVSKKELKSSYSLKRGDVLVLSGINKKTTAKQRNGVPVLKDIWLLKYLFSVEQDSEINSVLTLTIQIL*	common_virus_hmm	common_virus	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0004	shell	direct	high	1142	0.999	GCA_002913525.1_00069
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	77364	78488	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	4384	5508	GCA_002913525_1_1_68	GCA_002913525_1_1_68	-	140829	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MITYLVGNPGSGKTYYAVFMIYRLFLYEPKKTFLTKFVKPKEKPDYSFCYTNINEFKFELCDKFKKFDFDEFYLGLRNLYALYKTGATDNEVNEKAKELNLYGCVFVLDECHNFFKDKKDEILVWWLTYHRHLYQDIYLITQDLTLVNNEYKRIAEKFYRAVDSSRRLFSKKFRYEVYASFRLYKKDQLEIINIPFLQEVFDLYHSGQSSNKKSFVRFYFFLAVLVFVLLLLYFYFIVMSMFEVEKPDKDVPPIENKIPAPVSEQPKNSSLFFDDKKPKNNNIDIPEIYIYDITCLNNNCHFSDDYHLFPLSLITYISSTHTPLYFYFEPKSHELVKYYYVFDKPVFQNLQKNNKGVSDEKFNQIPNSSVSAIK*	hallmark_hmm	common_virus	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0005	shell	direct	high	1124	0.999	GCA_002913525.1_00070
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	78491	78907	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	5511	5927	GCA_002913525_1_1_69	GCA_002913525_1_1_69	-	140829	.	.	hypothetical protein	MPAIISMIVNLFGFFKWGKVVDFVLRGITFAKMVIINGLLFASILAYVAAVLVILNFIYTKFNYIVDYINNLSVGNDKIITTSMMVLKSLGAWNALCDVFAIFSPVLLSFFVIYATKIGIFVFKNARDTLLSFIIAKL*	.	hypothetical_protein	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0006	cloud	direct	high	416	0.998	GCA_002913525.1_00071
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	78919	80337	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	5939	7357	GCA_002913525_1_1_70	GCA_002913525_1_1_70	-	140829	.	PFAM:PF05616.12	attachment-protein	MKFLIKLFCLLSLVSSFAFSTEVFFFSTKDADNYLKKSNVKFLANNKYVMFDRPDDPGHVYVDRVYSYDTYFYAGSLRGYFWNNQTGDVYYISNDVKTNYFLDKGHWGTFTYAYEYSGTYNSNAVFLTYVSIYEFHKTNVAVCNVGEEFNTETMQCVHGCPAGQLWNVDTNSCVVDCSDEDNHKFFTSDYKCIDCSSALTKSEIAKCYCTGLGSSFNRSSFVFSSNSENPNLITTFCDNETEISFKFDKDKMKDKDNNSTNSSDKDKENPKPDKDKDNPNPDKKDNNENSNNSSGESGNPTNNNSGGSAGNGSSGGGGTGVETKPNPNYNGNGKEDGKGDGKEDSKGEEGKGDDAVAQKLDYGDLEKDSDKFNSDFKDALDSVISQAQDFKNSLNDTISKIKEGGLAKFNQSAIPNTCPLTYNVDFSYFRKDITFDICKVIAPASQTLYYFFYVVFFVLFLIVTIKLFLFTF*	common_virus_hmm	common_virus	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0007	cloud	direct	high	1418	0.999	GCA_002913525.1_00072
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	80885	81103	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	7905	8123	GCA_002913525_1_1_71	GCA_002913525_1_1_71	-	140829	.	.	hypothetical protein	MKFLASAKSKVLAGVAAVSVLSSNALAAGMTMAADGTVSGTPDIGPFMGIAGAIIGVLAIVFAVKKGFSLLR*	.	hypothetical_protein	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0008	cloud	direct	high	218	0.995	GCA_002913525.1_00074
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	81182	81310	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	8202	8330	GCA_002913525_1_1_72	GCA_002913525_1_1_72	-	140829	.	.	hypothetical protein	MDFALLSDLIVVTYIVVSYVLFFALVFTFVKDFEIKRKNKGV*	.	hypothetical_protein	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0009	.	unmatched_CDS	none	0	0	.
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	81315	81692	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	8335	8712	GCA_002913525_1_1_73	GCA_002913525_1_1_73	-	140829	.	.	hypothetical protein	MQIVKSDYDLKYILKGGLVRSSASGKFEGNDYSSSVRISSSNIYDVENEKTGFTDEVEQKVVFKIICPDNNTAGLVASAIKEKFRKGEEIPVEGGFPNDQRIITIANPVEYFLFDTKPAKKTESK*	.	hypothetical_protein	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0010	shell	direct	high	377	0.997	GCA_002913525.1_00075
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	81944	82153	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	8964	9173	GCA_002913525_1_1_74	GCA_002913525_1_1_74	+	140829	.	PFAM:PF10654.8	DNA-binding-protein	MTRQELADKLNITRNTLTNWEKEKPELIRLINQGLALDEQISETKKFLEKLEKIKEKANNGKINIKETK*	phrogs_hmm	hypothetical_protein	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0011	shell	direct	high	209	0.995	GCA_002913525.1_00076
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	82153	82620	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	9173	9640	GCA_002913525_1_1_75	GCA_002913525_1_1_75	+	140829	.	.	hypothetical protein	MQKILIILIFSINAFCYDFGEDVNIMGKWEITTENNQFVNFMTSPGNKWKVEIKDDGFIYDLEDGKFIHEKWSYTREQGVINIEFYNQNNSGEKMFNGRFKNLTNNDIKIIKKIEFNKYLVEIIGTNDKLIMQRLGDSKQVKNTKLKKDIKIEMK*	.	hypothetical_protein	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0012	shell	direct	high	467	0.998	GCA_002913525.1_00077
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	82639	82917	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	9659	9937	GCA_002913525_1_1_76	GCA_002913525_1_1_76	-	140829	.	COG3636	DNA-binding prophage protein  [Mobilome: prophages, transposons]. 	MKEEFTKFNLEDYLTTDELRKEYLNQVLADGDIEEFKRALFYIAKSKGIENVAKKANLNRESFYKMFKENSKPRFESIFKVVNALDIKLVYA*	mmseqs_cdd	nonviral_gene	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0013	shell	direct	high	278	0.996	GCA_002913525.1_00078
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	82914	83207	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	9934	10227	GCA_002913525_1_1_77	GCA_002913525_1_1_77	-	140829	.	COG3657	Putative component of the toxin-antitoxin plasmid stabilization module [Defense mechanisms]. 	MKVLKSSTFDKWLHKLNNPIVKVSILRRLEQIETKDHLGDYKFIDTDLYELRFFNRGGLRIFFTFDGDEIIILLNAGDKDSQSDDIKKAKEILKDYR*	mmseqs_cdd	nonviral_gene	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0014	shell	direct	high	293	0.997	GCA_002913525.1_00079
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	83356	83715	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	10376	10735	GCA_002913525_1_1_78	GCA_002913525_1_1_78	-	140829	.	PDB:1Z19_B	Integrase	MIYKMSDELYSRLYKRYIVAKEQKRLNDYVFINPMTDDKFKDLRKSWASLLKRNNLPKIRLHDIRHLIGTYSINYLKIPIEQVSFTLGHTNIITTQKYITANVKKSQETIENLLKSISE*	common_virus_hmm	common_virus	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0015	shell	direct	high	359	0.997	GCA_002913525.1_00080
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	CDS	84093	85988	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	11113	13008	GCA_002913525_1_1_79	GCA_002913525_1_1_79	-	140829	.	PDB:4KFU_C	Genome-packaging-NTPase	MFQALSTSGANSGVIGGFIVSALKEVIGAIGTAVAILMIFIISLGLAFRENFIIVLRKAFVDKEPNGYEEKSRSVKEVRIRQIPKIERKKPKANEIKEEELIDAQVLNDDEPNLDSEPEFEPEPEMEPAQESRPATIGGVEILNEVAENKKLLDQIERGKVEKPKDFVLPPLKFLNDPPKRSHNINEAEIDQQISNLLDKLRKFKIDGDVVRTYTGPIVTTFEFRPAPHIKVSKILTLQDDLAMALKAQTIRIQAPIPGKDVVGIEVPNQNLETIYLKEILESEVFKNASSPLTMALGKDIVGAPFVTDLKKLPHLLIAGTTGSGKSVGINAMLLSLLYRNSPQTLRLMMIDPKMLEFSIYNDIPHLLTPVITEAKKAITALSNMVAEMERRYKIMSQTRTKNIESYNEKMKSEGGEQFPYIVVIIDELADLMMTSGKDVELYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSRISYRVGQRIDSKVILDQMGAESLLGRGDMLFTPPGSPGVIRLHAPFASEKEIETIVNFLKEQQDVIYDEKFLAEEGSSAGSAAGALGEEELDELYEEAKEIILSEQKTSISYLQRRLKIGYNKAANIIEQMEKMGVLSPVNAKGQREILV*	hallmark_hmm	common_virus	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_CDS_0016	persistent	direct	high	1895	0.999	GCA_002913525.1_00081
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	tRNA	73606	73680	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	626	700	tRNA-Gln	tRNA-Gln	+	140829	.	tRNAscan-SE score: 52.9	Gln	NA	tRNAscan-SE	.	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	tRNA	73707	73781	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	727	801	tRNA-Met	tRNA-Met	+	140829	.	tRNAscan-SE score: 74.7	Met	NA	tRNAscan-SE	.	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote	cenote	tRNA	83227	83309	GCA_002913525.1	PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525.1_PPBQ01000001.1	GCA_002913525.1|PPBQ01000001.1	GCA_002913525_1_1	GCA_002913525_1_1@C6	10247	10329	tRNA-Undet	tRNA-Undet	+	140829	.	tRNAscan-SE score: 22.8	Undet	NA	tRNAscan-SE	.	C6	13008	72981	85989	GCA_002913525.1|PPBQ01000001.1@region_72982_85989@tool_cenote_tRNA_0003	.	.	.	.	.	.