core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	2	1474	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	3	1475	GCA_002916785_1_67_1	GCA_002916785_1_67_1	-	155799	.	.	hypothetical protein	MQSNLAIAEELLRIGRYLEPQLPTCPNEDCELFRKAEPEHSGRHTRFGTNAHGTPRFKCGACRKIFVFGGRSTKRQQKTHPNIGIFEHLMNSMPLRRIIKVLGISPAILYDRIDFIHEQCQIFAGERERGLLDREDLGKRYISTDRQKLIVNWSDRKSRKNTVLLSIASADQITGYLYAANVNFDGEMDSEKVKEEMTKFGDQRLAKPFRRFARVWLPQDWDDAAVRAAASRKGTRRASEEPTELPGELLAAVKDTYDAAQEREDIESGDDPSTATRAPAKGMLLHEQTVMAAHIQFVTRLLQKAEKLRFFVDQESGIRAAILVSVPERVLNRTADAFYVKVLKEFTVDQKKGIVGAAKRRLRKVMSDAGVDEEEASLILALEELSSPTLIGKWGDPWFRHPIADMREPQKGVSWLTDIDEPETDPEKRSDQLRHFARLHLKASLTAVDRFFMQVRRALTVAERGVISASADRRLWFGKNAYNPAVLVKLV	.	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	1811	2236	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	1812	2237	GCA_002916785_1_67_2	GCA_002916785_1_67_2	-	155799	.	PDB:1ZR4_E	gamma-delta-Resolvase,-site-specific-recombination	MTVWGYARVSTLEQNTAAQMAAFRRAGIDRVIQEKRSAVKDRPELEKLLARLQAGDVLVVYKLDRLARSVSHFVKVFDALKAKGVGFRSLTEAIETDTAQGRMFVHLLTAFAEFERELIRERCLAGQRAARAAGKTWGRKH*	common_virus_hmm	common_virus	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0002	cloud	direct	high	425	0.998	GCA_002916785.1_03901
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	2551	2793	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	2552	2794	GCA_002916785_1_67_3	GCA_002916785_1_67_3	+	155799	.	.	hypothetical protein	MNYQQLEQMAMRAMIFEAVVGLIILILLFWATYWVIKAGVRDGIREAGGNRRTHERPPAPAGYRWALVKETVDDQDLRAD*	.	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0003	cloud	direct	high	242	0.996	GCA_002916785.1_03902
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	2790	3968	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	2791	3969	GCA_002916785_1_67_4	GCA_002916785_1_67_4	-	155799	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MPINFVTGLPRQGKTLFTFIQVQERAKKEGRPVFYCNIPEVTLDGWQEIDHPDKWMECPNDSIIVVDELQDFWGMAPPGAKVPLPILELSKHGKRGIDFYFITQDPTLVHATPRKLCETHWHVVRAFGSENAVAHKFNRMQTDPERVKAKSEKYPWRYPKEAFGKKDKAGNWISKPWYKSADVHNIKRQIPLKLWAIPGGLVMAGLAVWAGIHLFGGVLERAKGANAQLPGVAVAPGAGARAVDAPGPGASPPSGRALAVAEYVDQRKPRLPGFPNTAPVYDQATQPVEAPYPAACVKMGQRCDCYTQQATLLQVAHDVCIQIVQRGYFMDWKRPTTEVVRQPRRDEPMRQAAPVQPPVVINMPTQAQPVQPVSEWSQGLAARNAEVRSMVR*	hallmark_hmm	common_virus	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0004	cloud	direct	high	1178	0.999	GCA_002916785.1_03903
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	3972	4274	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	3973	4275	GCA_002916785_1_67_5	GCA_002916785_1_67_5	-	155799	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MPWIISVLLGGLLRLVSSFVGRVLVALGFGFVEYTGISALVDSVKAQATGLLSSVGASSLAEWAGFFRIDQHLSIVISAIGVKVLLNSLGGDKVRRLVQR*	hallmark_hmm	common_virus	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0005	cloud	direct	high	302	0.997	GCA_002916785.1_03904
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	4278	5642	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	4279	5643	GCA_002916785_1_67_6	GCA_002916785_1_67_6	-	155799	.	PFAM:PF05616.12	attachment-protein	MAYILRLILLACVAFFSAQSNAATLYQNCKGQGYDYGDLKTSLLPAGHYWAYYDEFFLPTNTNCKQVNGWHCPNNQSYKAVDQCVAAPKCADNEVLKDGVCVARSDPVAEFCAALPGAQYSNQEVVTGSSAPPSVGCTPTMYVDQTTRGCGGTFQREFSAQHDGKWYHYGTLTLTGGTCNLVEGATGENPDGTTPTDAAPPADDRKCPNGFPGTVNGIETCVPYSGQNGVGVSGGTTTTTNPDGSTTTTTTQGQTSCTGASCTTTTTTTTTTGGGTPSTTTTSTTTTRNEFCRKNPTDPVCTGSATGGDGGGDGNGDEEASSFGGSCGAWTCEGDAIQCAIAREQHQRNCKLLDEPPDSVYAAAADGSDGISADKLKSEAQQVSVGSFDSSGFGWGSSCPADPSIPLNFGGISAEFSIPFSRICGPLGVLSMAGVGITLLGSMVWVLGGRNNRG*	common_virus_hmm	common_virus	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0006	cloud	direct	high	1364	0.999	GCA_002916785.1_03905
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	5780	6061	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	5781	6062	GCA_002916785_1_67_7	GCA_002916785_1_67_7	-	155799	.	CDD:pfam10389	filamentous-major-capsid-protein-B	MNLVNVEKRRALSAVNAAVDLARKAGDALARPAVVGLTGLVVAGGARAQAVTIDTTEIVGTISGGVTAVSAIGVAVISLIVVIKLYKWVQRVL*	hallmark_hmm	common_virus	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0007	cloud	direct	high	281	0.996	GCA_002916785.1_03906
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	6067	6279	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	6068	6280	GCA_002916785_1_67_8	GCA_002916785_1_67_8	-	155799	.	.	hypothetical protein	MYCLRNDVQGYLEVSCDTPDALIVVTRLELAQLSPFYLDPQSAVEIGGALLMVMTVAWLLRQARKYLESE*	.	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0008	cloud	direct	high	212	0.995	GCA_002916785.1_03907
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	6285	6422	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	6286	6423	GCA_002916785_1_67_9	GCA_002916785_1_67_9	-	155799	.	.	hypothetical protein	MDDYEDFDDDAERCEERGSEDIEDSPEELSGVFLYRCCSCGHVAM*	.	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0009	cloud	direct	high	137	0.993	GCA_002916785.1_03908
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	6425	6688	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	6426	6689	GCA_002916785_1_67_10	GCA_002916785_1_67_10	-	155799	.	.	hypothetical protein	MTSLDLEHFAKAVAEIGFIAGVVGGIFGLACARVLQDLTDMFLAWEERRSRIGQARQRSFDRACASAQADQARACEREGGMRPMHEE*	.	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0010	cloud	direct	high	263	0.996	GCA_002916785.1_03909
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	6685	7008	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	6686	7009	GCA_002916785_1_67_11	GCA_002916785_1_67_11	-	155799	.	.	hypothetical protein	MNAPATASPSQGIKLVPMQVLIRGRIDAVRRHDKTTYTRIVTPAPDPYSRPQTVEVRSRQRLGQTGDEITVLAQLGGYTRKPFRSIDKETGETTMVTPVDHTVDAVE*	.	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0011	cloud	direct	high	323	0.997	GCA_002916785.1_03910
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	7005	8081	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	7006	8082	GCA_002916785_1_67_12	GCA_002916785_1_67_12	-	155799	.	PFAM:PF02486.18	Replication-initiation-factor	MTAAQLHDSPPSAWGGSRFSWRLRPVPAVGATAPSARAVTRVESSSATAQDSPRAKIDWLNATFEKPAMTVHGLVRFLNGLMPGRLDATLDGGLFGFTERYRLQLRLDDGAKVEVGAIALGGESQVGKWLLQLNGKGCGMVTDWESVQELLEGLGAAISRVDLAVDFLEGEYSVDDALTLYDTGAFINRGRNPELDTQGSWHESGHKGRTMYVGKLKHGKTLCVYEKGRQLGMPDSDWTRFEVRLGNRDRVIPLSVLTNPDEAFVGAYPALRDLLQAAALEIPTQREETKGTLAHALYHMRRCFGAHAHQAMEATGCTAGDLIEEVRVHRMPRKLDPSGVVAGLAWPELQAQIERLKT*	rep_hall_hmm	common_virus	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0012	cloud	direct	high	1076	0.999	GCA_002916785.1_03911
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	8078	8359	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	8079	8360	GCA_002916785_1_67_13	GCA_002916785_1_67_13	-	155799	.	.	hypothetical protein	MKPINGGQSALIHMQGRPAPVRTWLVKHPPGVLVPGSTVEVHPTHSIKKFYTVDSFDGYVRQLRAFGYTVQFTSPFTATVVTSPFTANVEAKQ*	.	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0013	cloud	direct	high	281	0.996	GCA_002916785.1_03912
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	8356	8826	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	8357	8827	GCA_002916785_1_67_14	GCA_002916785_1_67_14	-	155799	.	.	hypothetical protein	MRLVSKHAQVGYQTPGDRPGCRNCAHFEVTRHDSPVIAPRTACTLHDLEVTSGGICNSHKLQRKAGEAELAFLARQCDLFKRQVQELQPRLVDTRVFPSVGELYEGKPMTVAKHRRLTVEQLVTNEEASGDPELVAIAAKRRRWAGMPPQARERRA*	.	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0014	cloud	direct	high	470	0.998	GCA_002916785.1_03913
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	8823	9197	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	8824	9198	GCA_002916785_1_67_15	GCA_002916785_1_67_15	-	155799	.	.	hypothetical protein	MPHSPITAGTQVVYQDGIYTVRAVDGNVLELAYHTGDFFRLVHASSVLVCPPPAAPTVPASLPAPADAGQGAGTHQGRTVDVELAHCTECDWEGPLCNAEFFCHRPPDVVIGCRFCGSALRLMR*	.	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0015	cloud	direct	high	374	0.997	GCA_002916785.1_03914
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	9330	9593	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	9331	9594	GCA_002916785_1_67_16	GCA_002916785_1_67_16	+	155799	.	PFAM:PF10078.8	DNA-binding-protein	MHSTMNLLADAEQVKDLSAWAESLGLTKRALYTAKYRGSLSPAIAGALAEELGKDPKDWIVVAALESERDSACKERMLKRVRKMTSL*	phrogs_hmm	hypothetical_protein	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0016	cloud	direct	high	263	0.996	GCA_002916785.1_03915
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	9609	10505	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	9610	10506	GCA_002916785_1_67_17	GCA_002916785_1_67_17	+	155799	.	PRK02155	NAD kinase. 	MKPIFRRVAVIGKYPGPGAVSASDSARQIIESIAQFVTQQDCELTLEAETAAHTGLTQYHTLDVEGIGRQCDLCLVVGGDGTMLGVGRRLAGYGTPLVGINQGRLGFITDIPLEGYQDALTPILHGDYEEDVRPLMQACVMRGGECVFEALALNDVVVNRGSTSGMVELRVEVDGVFVSNQRADGLIVASPTGSTAYALSAGGPMLHPSIPGWVLVPIAPHTLSNRPIVLSDATEVAIEVAGGRDISANFDMQSLASLQHGDRILVRRSAHRVCFLHPRGWSYFATLRKKLGWYEGGS*	mmseqs_cdd	nonviral_gene	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0017	persistent	direct	high	896	0.999	GCA_002916785.1_03916
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	10508	12172	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	10509	12173	GCA_002916785_1_67_18	GCA_002916785_1_67_18	+	155799	.	PDB:4UX3_A	Chromosome-Mainenance-protein	MALRRIALSDFVIVRSLELDLHAGFTVLTGETGAGKSILIDALQLVLGARADSGVIREGAQRTDVCAEFDGGTIALAAWLDEAGFPRDDTLLLRRTVDVQGKSRAWINGIPATAAQMRAVGEHLLDIHGQHAWQSLTRPDAVRGLLDAYAGAQVQPLAALWTSWRDAQQALTHARAAQDTLQQERERLQWQIGEVDKLAPRDGEWEELNAEHARLSNAQSLLDNAQAALTVLEDEDAGGALRALAQAQHLLQDYEHVDPSFRTMNEVLTSCIAQAGDVAHSLQSYLRHAEPDPDRLQQLDARVSQWMQLARRYKRTPPELPALLQDWKDTLHRLDSATDLAALQAAEQAHGAAYQKAARALSQKRAKAAPLLAQAITRAMQGLGMAGGRFEVQLDKAEPGPHGIDQVAFLVSSHPGMTPRPIGKVASGGELSRMALAISVTTSELGEAPTLIFDEVDSGVGGAVAETVGRLMQQLGTARQVLAVTHLPQVAACADHHLVVAKHKHAKGTTSSVAAANEEARVAEIARMLGGERLSPTTLAHAREMLQGAAKPTP*	common_virus_hmm	common_virus	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0018	persistent	direct	high	1664	0.999	GCA_002916785.1_03917
GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote	cenote	CDS	12176	13039	GCA_002916785.1	MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785.1_MTBE01000007.1	GCA_002916785.1|MTBE01000007.1	GCA_002916785_1_67	GCA_002916785_1_67@C0	12177	13040	GCA_002916785_1_67_19	GCA_002916785_1_67_19	+	155799	.	PRK05416	RNase adapter RapZ. 	MDLEVVVITGMSGSGKSVALHALEDAGYYCVDNLPPELLTSFVELEHAHHGHRVAVAMDVRSATALPLVPQQLAGLREQGVQVRQLFLDATDDVLVRRFSETRRRHPLSQAEMREGPRPLLHTMRLERELLAPLREQAHVIDTSTLRSAQLLSYVKDLLSVPPSRLTLVFQSFAFKRGISMDADYVFDVRMLPNPHYEPLLRALTGKDAPVIDYLRQQPEVALMLAHIGDFLDHWLDALAHNHRSYVTVAIGCTGGQHRSVYLVEQLAARFEGRWNTLRRHRELDGI*	mmseqs_cdd	nonviral_gene	C0	13040	0	13040	GCA_002916785.1|MTBE01000007.1@region_1_13040@tool_cenote_CDS_0019	persistent	direct	high	863	0.999	GCA_002916785.1_03918