core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1983371	1984018	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	1	648	GCA_002944995_1_1_1834	GCA_002944995_1_1_1834	+	2497739	.	PFAM:PF06152.10	minor-capsid-protein	MKVSREKLLKQQLDLIVKDSALDIHDEIENKLVDREVERQAHILGEHVKIDDTEVKAVVNSNFKGVNWSTRLCQDMAVVQKEVEKTTSNVLLRGRHPNEYVAKFKKQTNTTTYNASRLLVTESACVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHSLNGKVFKVKDMMPGVNAPPMHPWCRSTTVTHVGNWRDRFFTERKGKYQTENKES*	hallmark_hmm	common_virus	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0001	shell	direct	high	647	0.998	GCA_002944995.1_01935
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1984061	1984414	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	691	1044	GCA_002944995_1_1_1835	GCA_002944995_1_1_1835	+	2497739	.	pfam15542	Bacterial toxin 50. A predicted RNase toxin found in bacterial polymorphic toxin systems that is proposed to adopt the BECR (Barnase-EndoU-ColicinE5/D-RelE) fold, and contains two conserved histidine, a serine, two lysine, and a threonine residue and a HxVP motif. In bacterial polymorphic toxin systems, the toxin is usually exported by the type 2, type 6, type 7, and MuF-type secretion systems.	MIRSGKIKLDINPEKQNRHSLNHSLYLKNKNFALKNNERLPSYTTLSINELNRLVQQYSTSGKILINKNGFNHKKVINFERIIGKAFIDGKYIETTFGKVHYSKTDSHIIPFISKEK*	mmseqs_cdd	nonviral_gene	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0002	shell	direct	high	353	0.997	GCA_002944995.1_01936
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1984416	1984610	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	1046	1240	GCA_002944995_1_1_1836	GCA_002944995_1_1_1836	+	2497739	.	4A54_A	EDC3, MRNA DECAPPING COMPLEX SUBUNIT	MLIKDAYRKNVIVTLKNNEKFKGFVFDYENPLESDTGNYSLDLETDLGIYSIDESEIKSIKLIS*	hhsuite_tools	hypothetical_protein	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0003	shell	direct	high	194	0.995	GCA_002944995.1_01937
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1984771	1984938	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	1401	1568	GCA_002944995_1_1_1837	GCA_002944995_1_1_1837	+	2497739	.	PFAM:PF14265.5	head-scaffolding-protein	MENNQSNITEETKHNDNLETTYEQTQQKEKTFSQEEVSQMIKDRLARKKRNLNNV*	phrogs_hmm	hypothetical_protein	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0004	shell	direct	high	167	0.994	GCA_002944995.1_01938
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1984935	1985318	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	1565	1948	GCA_002944995_1_1_1838	GCA_002944995_1_1_1838	+	2497739	.	PDB:6B0X_d	capsid-scaffolding-protein	MKDAIQEAEKLAKMNKDQKNQYELEKLLKENEELKAEKALSQMKNETRSMLNESGLENFDDQIVNILVNTDAEKTRKNVESFTNLLNQMVKSNVEKALRQDSPVCTQSNKMTKDEESDYLVSGRKCL*	hallmark_hmm	common_virus	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0005	shell	direct	high	383	0.997	GCA_002944995.1_01939
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1985569	1986252	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	2199	2882	GCA_002944995_1_1_1839	GCA_002944995_1_1_1839	-	2497739	.	pfam07553	Host cell surface-exposed lipoprotein. This is a family of lipoproteins that is involved in superinfection exclusion. Proteins in this family have been shown to act at the stage of DNA release from the phage head into the cell.	MQQERQSWYQKSWFIILTLLFIFPLGLFLMWRYAHWKNWLKLTVSSVYIISLVLTLLFQVSLLNENKTNQIEHASTMKEKSNINNVKTTKNKNMEKSTQTDKQNSVNLKQNTKDQNNNANDEAASPTSEQNAAIAQAKSYANTLPISKKSLYKQLTSEYGEKYPADIAQYAVDHISVDYKMNALRLAKSYVKNINISNQALYDQLVSENGEGFTPEEAQYAMNHLDR*	mmseqs_cdd	nonviral_gene	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0006	persistent	direct	high	683	0.999	GCA_002944995.1_01940
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1986322	1987347	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	2952	3977	GCA_002944995_1_1_1840	GCA_002944995_1_1_1840	-	2497739	.	COG2008	Threonine aldolase [Amino acid transport and metabolism]. 	MISFENDYLEGAHEKVLNRLVETNRIQAAGYGFDDFSAQAADKIRQRIDCPDATIRFLVGGTQTNQVVINSMLDSYEGVISADTGHVAVHEGGAIEFSGHKVLTIPSQEGKITAQDVENYIETFESDFKKEHMVYPGMVYISHPTEYGTLYTKEELQSLSRVCRRHQIPLFMDGARLGYGLMSNQTNVTIEDVAKYCDVFYIGGTKIGALCGEAIVFTKQNEPKNFTTIIKHHGALLAKGRLTGVQFLELFTDDLYFDISRHAIKMAEKVKKGFIDKGYQVYFDSPTNQQFFILSNDKIEELKQKVKFAVWEKYDNQHRVVRFATSWATTEENVNQLLELI*	mmseqs_cdd	nonviral_gene	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0007	persistent	direct	high	1025	0.999	GCA_002944995.1_01941
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1987661	1987858	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	4291	4488	GCA_002944995_1_1_1841	GCA_002944995_1_1_1841	+	2497739	.	.	hypothetical protein	MQQIKFKTLTEETLESLEKSVNSFLKSQEGNGYKLLNITIKQIEERAFPHNDEDFNAILTLVTEA*	.	hypothetical_protein	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0008	persistent	direct	high	197	0.995	GCA_002944995.1_01942
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1987916	1989388	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	4546	6018	GCA_002944995_1_1_1842	GCA_002944995_1_1_1842	+	2497739	.	PDB:2ZE9_A	Phospholipase-D	MNFGFLGTILTILLVVGFITNVVLAFVIIFLERDRRTASSTWAWLFVLFVLPVIGFILYLFLGRTVSKKKMEKNNGDELHAFEDLVQDQIDSFDKHNYGYINDQVIKHRDLIRMLLMKQDAFLTENNKIDLFTDGHKLYEKVLEDIYNAQDYIHLEYYTFELDGLGKRILDALETKLKEGLEVKLLYDDVGSKKVRLSKFKHFRALGGEVEAFFPSKVPLINFRMNNRNHRKIIIIDGQIGYVGGFNVGDDYLGLGKLGYWRDTHTRVQGECIDALQLRFILDWNSQSHRPQFKFDQKYFPKKNGDKGNAAIQIASSGPAFDLHQIEYGYTKMIMSAKKSIYLQSPYFIPDQSYINALKMAANSGVEVNLMIPCKPDHPFVYWATFSNAADLLDSGVNIYTYQNGFIHSKILMIDDEISSIGSANMDFRSFELNFEVNAFIYDEDIAKQLRQAFEKDIEQSKLLTKEVYDKRPLSIKFKEGLAKLISPIL*	common_virus_hmm	common_virus	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0009	persistent	direct	high	1472	0.999	GCA_002944995.1_01943
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1989566	1990441	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	6196	7071	GCA_002944995_1_1_1843	GCA_002944995_1_1_1843	+	2497739	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MIELRHISKSFKEHKVLEDISIDIKNNYCTALIGKNGAGKSTLIDIIVGNNHYDSGQIADKSNLLNRHKMGILFQKTEFPKYIKVCELLHLYQSFYQTFISFHQFKEITQFSDRQMNQFACNLSGGQQRILDFALALVGKPELLILDEPTSAMDVEMRQHFWNVIDKLKMNNTTILYTSHYIEEVERMADQVMMLDKGKIQLDDSPENIKRNQSYSVIRIPCKYQELINQLKHKYEIELIKNRYEIKTTDVSDVLQLLKQYHVNFNKIEILKKSLLEVMFSNDLSKGGNYQ*	mmseqs_cdd	nonviral_gene	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0010	persistent	direct	high	875	0.999	GCA_002944995.1_01944
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1990438	1991169	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	7068	7799	GCA_002944995_1_1_1844	GCA_002944995_1_1_1844	+	2497739	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MISTYFKIELKIIFRKKLYLVMSIFLPVVFYLLFTSILDMPEEAKLKFYKEYMYSMTVFSLMNFCLLSFPLDLIEERNQGWYKRLMVTPLSSFQYYLVKISKTMCQFLIAITIIFSVAHFYKDVHMTVFQWIFSALTLWIGVSLFLTLGLIIAQLNDIQKASSFANLLNITLAILGGLWFPVYTFPDWLQSISKHMPTYNLKLLAIDLAQNKGVNIEAFGYLVVYCIIFVSIALFMNKKGDVH*	mmseqs_cdd	nonviral_gene	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0011	persistent	direct	high	731	0.999	GCA_002944995.1_01945
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1991169	1992263	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	7799	8893	GCA_002944995_1_1_1845	GCA_002944995_1_1_1845	+	2497739	.	COG4585	Signal transduction histidine kinase  [Signal transduction mechanisms]. 	MESRSWGVRIGELSTLIYLIFPILAIFVDKRGNFLTYLIVCTIFIISYVTMIIFYKYLSDSILYSLLVIHYLGIFYFVYSVNPMNSLFFFYSAFALPFIFNVRVVSKEFITFLIAMISCLILTYIFNPTFVVPLSAFYLVILIVAVGNFKNRDERIMKAKLEEKNKYINVLIAQQERNRISQDLHDTLGHVFASLTLKSELAVKLIDTNPKEAKNEMQAINQLSTEALNKVRLIIDDLKIQSFEDEISSLEHLLQNANLHFKFNNKSAAKSLNPAKQSILSMIFREAINNVIKHAHATEVIGELKVHEHQIILKIKDNGVGIENEDASNLKSIKERVDYLNGKLIVQSNNGTLIIVEIPRGDLL*	mmseqs_cdd	nonviral_gene	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0012	persistent	direct	high	1094	0.999	GCA_002944995.1_01946
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1992260	1992862	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	8890	9492	GCA_002944995_1_1_1846	GCA_002944995_1_1_1846	+	2497739	.	cd19930	phosphoacceptor receiver (REC) domain of DesR and similar proteins. This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MISLVITEDQLMLRKAMVQLIEMHEEMNVIKDFENGVEALEFIENNEPNVAILDIEIPGLTGLEILSYVRKKQLNTRIIIVTTFKRPGYFEKAVANDVDAYVLKERSIDDLIKTIYKVTKGEKEYSPSLMTSLFTESNPLTHKEQVVLREIGNGLSSKEIASKLYLSNGTVRNYTSTIIDKMNSDHRFEAWKKANEKGWI*	mmseqs_cdd	nonviral_gene	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0013	persistent	direct	high	602	0.998	GCA_002944995.1_01947
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1993031	1993240	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	9661	9870	GCA_002944995_1_1_1847	GCA_002944995_1_1_1847	-	2497739	.	.	hypothetical protein	MMLGVKEMDTSNENKITIIAVIVAIIVGVVLQIVFKLPLIVSLVGSVFLGMFVGFIVYLIQSFRRKKKN*	.	hypothetical_protein	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0014	persistent	direct	moderate	189	0.9	GCA_002944995.1_01948
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1993399	1993920	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	10029	10550	GCA_002944995_1_1_1848	GCA_002944995_1_1_1848	+	2497739	.	PDB:1RKN_A	Thermonuclease	MSSLLVVAMIGILVIIFQFVNHSGPFSGSESQHQSDNSNLNGKDKVYVKRVVDGDTFVAQKNGEEIKVRLIGVDTPETVKPNTPVQPYGKQASNYTKKYLTHQNVYLEYDKEKTDRYGRTLAYVWLKNGDMFNESLVKKGLAREKYFSPNGKYRDTFVNAQEEAKKRKLNIWS*	common_virus_hmm	common_virus	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0015	persistent	direct	high	522	1.0	GCA_002944995.1_01949
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1994656	1995528	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	11286	12158	GCA_002944995_1_1_1849	GCA_002944995_1_1_1849	-	2497739	.	.	hypothetical protein	MSLTIILSIIIIILIMAMVLNQKFMKDRVETEEYARNQLISKNSILSEENLSLKNQMLSTNNDVGQHAFKNAKRELRKILNRFKEEGRLRSYTIVPTSNLAVKHPLFEYARSFDFIIITDVGLINVDVKNWNQKTFYHFDVPDQHLEEGQPQYNTEKVVGHYISNRYHSQFKTTRSGVYTFIEILQDNRVIYEFYDHDPYDKAANNAKALKDKIENDYNFKIQSIGVIYFSDGSVNIIEGSDESDKYVDTVSTPISLEKVIEEAIDLSKHPLTDKQIEEISENFKQHMNN*	.	hypothetical_protein	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0016	persistent	direct	high	872	0.999	GCA_002944995.1_01950
GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote	cenote	CDS	1995855	1996454	GCA_002944995.1	CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995.1_CP014119.1	GCA_002944995.1|CP014119.1	GCA_002944995_1_1	GCA_002944995_1_1@C154	12485	13084	GCA_002944995_1_1_1850	GCA_002944995_1_1_1850	+	2497739	.	.	hypothetical protein	MFVKEEKPVNKIVEILRKTSSHLFKFHGEVAMHLFLNDDFILPSKIDICVERKKLLEIIRVIPEEFTIHYYDNQLYERLRESLSLSDVEHVKVFKNDTEVMTIFVYDVVNDEWLFRLDHHIRLPKNNIYFHSLSWNVDYIKPEIVLMYDLMSEQKYHQFSNYKAVIDSLSYYQFYILKLVVGEQRIKKAIVNSSTKKIS*	.	hypothetical_protein	C154	13084	1983371	1996455	GCA_002944995.1|CP014119.1@region_1983372_1996455@tool_cenote_CDS_0017	persistent	direct	high	599	0.998	GCA_002944995.1_01951