core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	339737	340600	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	1	864	GCA_003028315_1_1_300	GCA_003028315_1_1_300	+	2688408	.	PDB:4XLN_L	DNA-directed-RNA-polymerase-subunit	MNNAFALPVIHSGNGSLEQYIHTVNSIPMLTPEEESQLAERQQKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRYEPSRGARLFSFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRKNLNALSPKEAQDIADDLGVKLSEVMEMEQRMTGHDIAIMADNNDDEDSFAPIDWLADHDAEPSRQLSKQAHYALQTEGLQNALAQLDDRSRRIVESRWLQDDGGLTLHELAAEYGVSAERIRQIEAKAMQKLRGFLAEEAEAV*	common_virus_hmm	common_virus	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0001	persistent	direct	high	863	0.999	GCA_003028315.1_00320
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	340713	341159	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	977	1423	GCA_003028315_1_1_301	GCA_003028315_1_1_301	-	2688408	.	COG1610	Uncharacterized conserved protein YqeY [Function unknown]. 	MSLKAQLTEDMKTAMRAKDQTTLSTIRLINAAIKQFEVDERTEADDGKVIAIITKMVKQRKDSANIYAEAGRQDLADKENAEIEILHRYLPQMMSAEEIRTAVETVIAMTGASGMADMGKAMGVLKTQLAGKADMGEVNKILKAALTS*	mmseqs_cdd	nonviral_gene	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0002	persistent	direct	high	446	0.998	GCA_003028315.1_00321
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	341327	341539	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	1591	1803	GCA_003028315_1_1_302	GCA_003028315_1_1_302	-	2688408	.	COG0828	Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]. 	MPAIRVKENEPFEVAMRRFKRAVEKTGLLTELRAREAYEKPTTERKRKKAAAVKRLQKRLRSQQLPPKMY*	mmseqs_cdd	nonviral_gene	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0003	persistent	direct	high	212	0.995	GCA_003028315.1_00322
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	341901	342212	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	2165	2476	GCA_003028315_1_1_303	GCA_003028315_1_1_303	+	2688408	.	COG0278	Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]. 	MTSIHDQIKEVVTTHRVVLFMKGTKQFPQCGFSSRAVQILNAAGCTDYVTVNVLENDAVRQGIKEYSDWPTIPQLYVNGEFVGGSDILMEMFEAGELQDLLKA*	mmseqs_cdd	nonviral_gene	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0004	persistent	direct	high	311	0.997	GCA_003028315.1_00323
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	342339	342965	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	2603	3229	GCA_003028315_1_1_304	GCA_003028315_1_1_304	+	2688408	.	TIGR01091	uracil phosphoribosyltransferase. A fairly deep split in phylogenetic and UPGMA trees separates this mostly prokaryotic set of uracil phosphoribosyltransferases from a mostly eukaryotic set that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins. [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]	MNVTVINHPLVRHKLTLMREADCSTYKFRTLTTELARLMAYEASRDFEIEKYIIDGWCGQIEGDRIKGKTLTVVPILRAGLGMLDGVLDLIPTAKISVVGLQRDEETLKPVSYFEKFVDSMDERPALIIDPMLATGGSMVATIDLLKAKGCKNIKALVLVAAPEGVKAVNEAHPDVTIYTAALDSHLNENGYIIPGLGDAGDKIFGTR*	mmseqs_cdd	nonviral_gene	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0005	persistent	direct	high	626	0.998	GCA_003028315.1_00324
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	343104	344039	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	3368	4303	GCA_003028315_1_1_305	GCA_003028315_1_1_305	+	2688408	.	PFAM:PF05840.12	Rep-protein	MFLQQQIEFQQQAAAKRAVLPCLNSNNCIDEKNTNVIKEKQKPASIEKYLPNTAKPEFNEFSTSHKKSAAALEMNVRQFIEVFGIEKVGFLTLTFADEVQDVKEASRRFHSLRTNFLKKHFEHYVCVYERMKSGRIHFHLIVNTREDIRRGLNFQQIQARNYTSANKNLRQLWQVLRENMEKYGFGRSELLPVKTNSKGLARYVGKYIAKHIDSRLPEDKGYRLIRTTIDKKQLWKIANSNFSFVSAGSRQWREKLQKWVICIEPLLQAHAELFYERKPKKITEDNYNAVLSALLSPKWAFYNRETIINMP*	rep_hall_hmm	common_virus	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0006	cloud	direct	high	935	0.999	GCA_003028315.1_00325
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	344060	344329	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	4324	4593	GCA_003028315_1_1_306	GCA_003028315_1_1_306	+	2688408	.	.	hypothetical protein	MSQENERKQGIFVIAAFDRMFTRERKNQDGTFSKTHYVGLIIRSDTETRLCEVRTKHPEKYEQYKPQQIVSMQVFPRAFKDNIYYSDEA*	.	hypothetical_protein	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0007	cloud	direct	high	269	0.996	GCA_003028315.1_00326
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	344417	344638	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	4681	4902	GCA_003028315_1_1_307	GCA_003028315_1_1_307	+	2688408	.	CDD:PHA00979	putative-major-coat-protein	MSIKTKFQKAAAFVTVSALPVMAFAEDSGMVEAAKTELGGLKTGIIAVGAVAVALAVAAVSISVIKSAVKRSA*	hallmark_hmm	common_virus	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0008	cloud	direct	high	221	0.995	GCA_003028315.1_00327
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	344647	344949	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	4911	5213	GCA_003028315_1_1_308	GCA_003028315_1_1_308	+	2688408	.	.	hypothetical protein	MGYQVGRICHETAEQAKNEVMTQVVPTIDKDGVLHHPVFNGQTWTYNEQTVKLQFPQCDSMKYYRLGEQIGIQMMFVMISLFAVVVIVKLVLWQRERNEE*	.	hypothetical_protein	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0009	cloud	direct	high	302	0.997	GCA_003028315.1_00328
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	344939	346720	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	5203	6984	GCA_003028315_1_1_309	GCA_003028315_1_1_309	+	2688408	.	PFAM:PF05616.12	attachment-protein	MKNDTRISVFTGYGKAPNISRLSVCLGSLLVVGQAWADAGLPPPAQHQGAGFPSEQALRQKGYDPKTGVWRVQSQNNGRPTVTKSGDTIKGSQPKTVTVTGNYGEKGTIRTTQTQTVSSSKLQNTINGVWAGGALAASVDKHSGLMGARIRSGDYKGAVESGVLMAGTFGNNLFGGIAESLGNLGRGLGLIDSPSPQDLRQAGERFYQWQMQKEQSGQLGEAVAAAAARKAAEGAAEAAKQQEQWQKAKESQKENGLYPVNVIFREQSPTGKIYYSNKIYYSYLKNFYNNNNGVNQGGSAKIYLRGVQGDYVYYQFKDKNSSTVGVEASSTFKPDPQKTVENMTLNQKDIKDILERMLNNQQTNHAELMNQLSKIGDSVEKSTISNEFTPMTADSAPYTPQGSNTPQQTRFTINRDGSITTTIIPRPDLKPNSTLAPTRSEIIPTPNKGQNTPTTPNSPNTPTTPDSPNVPTTPNIPNTPNNPTGQQNQNQENQKQDFCQQNPNAAQCMPGGDASYEDIVLPENTIDLDFKPLDVFQSDGTCPAPRSVDFGALGQVEFSYDPLCDLARKLRPIFIAICVLTCAYFVYESVKEL*	common_virus_hmm	common_virus	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0010	cloud	direct	high	1781	0.999	GCA_003028315.1_00329
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	346722	347003	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	6986	7267	GCA_003028315_1_1_310	GCA_003028315_1_1_310	+	2688408	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MNWASLITGVLMSVAGRILTAVGLSFISVTGLNSLQSYFINEISRSIGGFPDEALQILYIAGFGVILNWIFGAFSFVISLKGFKKLSTIIQSK*	hallmark_hmm	common_virus	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0011	cloud	direct	high	281	0.996	GCA_003028315.1_00330
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	347013	348188	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	7277	8452	GCA_003028315_1_1_311	GCA_003028315_1_1_311	+	2688408	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MLYLFTGVPGSGKTLQVVSMLAKRKDFKNRPLFIDGIPDLKIPHEEIPEGESIKTWPKWAPDGAIIVVDECQRIFRPRSSSSAVPDYVAELETHRHRGLDFLLITQHPRLIDVHLRSLIEHHTHFGKTNLGLRRKLEWTTGGAKEPESRANIKEALVSVYKLDKSVYGLYKSAEEHTKIRTKRSKVLYLIPVAIAMLGGGLYYFASFWKNLEKPIETAGQTAQAHIAAPAASPEAQAAAAPAADDGAAGRYAAAKVQTPSEPPKPHLTEEDYKPRIEERPETAPIYDGMNKAVKVMPWPAACIKAENRCTCYTDQGTKIKDIGKQTCLNYVKDGLPFNPYKAQTAENAKPTQTAYTPDAPQVLTMGGQIPQNLMYDGYNDKALTNVGGKIN*	hallmark_hmm	common_virus	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0012	cloud	direct	high	1175	0.999	GCA_003028315.1_00331
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	348196	348387	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	8460	8651	GCA_003028315_1_1_312	GCA_003028315_1_1_312	+	2688408	.	.	hypothetical protein	MNALEFVISCLVVYAIIHIHRKHGTAYFKMLIKEFGIFIFGLAIIFLVLCAAGVLMFAAQSHT*	.	hypothetical_protein	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0013	.	unmatched_CDS	none	0	0	.
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	348750	349697	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	9014	9961	GCA_003028315_1_1_313	GCA_003028315_1_1_313	+	2688408	.	PFAM:PF01548.16	Transposase	MYYLGIDVSKKTIDCCLISDSIFYERRFDNTEDGFGRLDDWIQEYTAEAVHCCCESTGIYHEAIAAHLRQKHTVSIVNPSKIKGFREAEQTRTKTDRQDARLIAEYCRRMQPQAWQPPTEEQEYLQAITDYIARLKQQRAAEQTKHQTAPDTIRHHIQTTIDHLNRLIATVQNELKDFYRQNPIYNEKKNRLKTIDGIGESAASALLAKLIRYDFANQNQFAAYLGLDPKIKDSGTSVKGKSRISKQGQKNARKALYMPALVAYRMNAFPAFTARLKARGKPPKLIIVAIMRKLAVIAYQLYKTGKDYDRSRYRN*	common_virus_hmm	common_virus	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0014	cloud	direct	high	947	0.999	GCA_003028315.1_00332
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	349946	350263	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	10210	10527	GCA_003028315_1_1_314	GCA_003028315_1_1_314	+	2688408	.	PF10084.9	Uncharacterized protein conserved in bacteria (DUF2322)	MSFQDNLAAMPDIGHLSGLDILDAQGKAVHHIPNEPGKQGSLKLYNALALNFGGKLDAAAAAQGLDWFAEHVADAQANPGKHPNIDLLLQVKNENLRLLLKPVEA*	hhsuite_tools	nonviral_gene	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0015	persistent	direct	high	317	0.997	GCA_003028315.1_00333
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	350334	351656	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	10598	11920	GCA_003028315_1_1_315	GCA_003028315_1_1_315	-	2688408	.	PRK06814	acyl-[ACP]--phospholipid O-acyltransferase. 	MSLKKDNLNFPTSRRFAPLFGTQFLGAFNDNMFKTALFVMISFYGLGKNNFLPASQMLNLGALLFILPYFLFSALSGQLSTKFDKAVLARWIKVLEIVIMAVAAFGFYIQSAPLLLVCLFCMGAQSTLFGPLKYAILPDYLNDKELIMGNSLIESGTFIAILFGQILGTSVAGLPPSVVGILVLLVAIGGTLTSFFMPNVPAKAPNTKIEWNIVKGTHALLRETAQYDSVFTSIIGISWFWFIGSVYTTQLPTFTQIHLGGNDNVFNLMLALFSIGIAAGSVLCAKLSHERLLLGLVTVGTTGLTVFGLILVWLTQGQRFTELNGITWFLSQGMAYPVMLVMTLIGFFGGFFSVPLYTWLQTASSESFRAHAVAANNIINGVFMVSAAILSAVLLMLFDSISLLYLIVAIGNIPLIVYLIQREPRFLNDMGKIFHNIGKR*	mmseqs_cdd	nonviral_gene	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0016	persistent	direct	high	1322	0.999	GCA_003028315.1_00334
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	351653	351850	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	11917	12114	GCA_003028315_1_1_316	GCA_003028315_1_1_316	-	2688408	.	COG3197	Cytochrome oxidase maturation protein, CcoS/FixS family  [Posttranslational modification, protein turnover, chaperones]. 	MESMFILVPISIILAFAIGYFFWWSGKNGQFDDLEGPAHRILMDDDSTDKLLENEIEKEEQESEK*	mmseqs_cdd	nonviral_gene	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0017	persistent	direct	high	197	0.995	GCA_003028315.1_00335
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	351850	352197	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	12114	12461	GCA_003028315_1_1_317	GCA_003028315_1_1_317	-	2688408	.	.	hypothetical protein	MSSENSGSLLRFFDMHYFSIHTQQGAHVGFFIMLPDDESETQPQSGRFAVKLQSEEGVAAEVLAPFGQTEIPQYWRVVKDRIELFFDDAPVGSLRNEYLTVSGQTFVLTDLTGAM*	.	hypothetical_protein	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0018	persistent	direct	high	347	0.997	GCA_003028315.1_00336
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	352678	353874	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	12942	14138	GCA_003028315_1_1_318	GCA_003028315_1_1_318	+	2688408	.	PRK00180	acetate kinase A/propionate kinase 2; Reviewed	MTQKLILVLNCGSSSLKGAVLDNDSGEVLLSCLAEKLNLPDAYITFKVNGEKHKVDLSAKPDHTGAVEALMEELKAHGLDSRIGAIGHRVVSGGELYSESILVDDEVIAGIEKCIPLAPLHNPAHLLGLRAAQSIFKGLPNVVVFDTAFHQTMPEHAYTYAIPHELYEKYGLRRYGAHGTSYRYVSDETARFLGKDKKDLRMVIAHLGNGASITAVANGESRDTSMGLTPLEGLVMGTRSGDIDPAVFGFLAENANMTITQITDMLNKKSGLLGLSGLSNDCRTIEEESGKGHPGAKLALDVFIYRLAKYIGSMAVAAGGLDVLVFTGGIGENSDIIRERVLGYLGFLGLKADHEANLKARFGNAGVITTADSAAVAVVIPTNEELMIAHDTARLSGL*	mmseqs_cdd	nonviral_gene	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0019	persistent	direct	high	1196	0.999	GCA_003028315.1_00337
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	354119	355780	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	14383	16044	GCA_003028315_1_1_319	GCA_003028315_1_1_319	+	2688408	.	PDB:4UX3_A	Chromosome-Mainenance-protein	MLLALSLRDFVIVENLNLDFQSGFTVLTGETGAGKSITLDAIGLLLGDKADYSQVRSGAKEAQLSALFDISLLPELKAQLQEQGFLDEDAEELSIRRIIDAKGKSRSFINNQAATLAQLKAVGGQLIDIHGQNAHHSLNQESAQRELLDAFAGSKAQAETVRQLYQNWVNAKKALQEAQEHAETIIIERERLEWQFNELNQLDVKQGEWEALSQSHDSLAHSAELLQAAEEVGDYIDGDNGIQRQIYQCQKLLTNLQNIEPRFAESLNMLASIEAELGEISANMRDVAGRSDIDPNELAAQEQRMGELMGMARKYRIEPEALPQKLAEIDERLQSLQAAADLEALAQTVARNLVEYQEAAHVLSAMRHQAAGRLGEETTGHMQHLAMKGARFDIVLLPSSPTAHGLEQVQFQVAANKGNPSRPLNKVASGGELARISLALQVVTSQYTQVPTLIFDEVDTGIGGGVAEMVGKALRALGKKHQVLAVTHLPQVASCGENHWQVRKHSEGEQTVSEISVLDHQQRIEEIARMLGGEIITDTTRSHAAELISLAAA*	common_virus_hmm	common_virus	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0020	persistent	direct	high	1661	0.999	GCA_003028315.1_00338
GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote	cenote	CDS	355931	356887	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C24	16195	17151	GCA_003028315_1_1_320	GCA_003028315_1_1_320	+	2688408	.	TIGR01380	glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]	MKVLFIADPMASFKTYKDTTYAMMREMAKRGWQLFHTLSGELSVQQGLVTAQAAPFEFLGAKSDDDHEWFKAADKVQTTLKDFDAVIMRTDPPFDMQYLYATQFLTLAEQQGAKVFNSGQAMRDFNEKLAILNFSQFTAPTLVTTRSADVRAFLKEHGDIIIKPLDGMGGMGIFRLTEKDPNIGSILETLMQLDSRTIMAQRYIPEIIHGDKRILIIGGEVVPYALARIPQNGETRGNLAAGGRGVAQELSERDREIAETLAPELKRRGILLAGLDVIGRNLTEVNVTSPTGFQEIMKQKNFDVAAMFADAVEAWSKQ*	mmseqs_cdd	nonviral_gene	C24	17151	339737	356888	GCA_003028315.1|CP028150.1@region_339738_356888@tool_cenote_CDS_0021	persistent	direct	high	956	0.999	GCA_003028315.1_00339
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2245627	2246541	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	1	915	GCA_003028315_1_1_2067	GCA_003028315_1_1_2067	+	2688408	.	COG0774	UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell wall/membrane/envelope biogenesis]. 	MLQRTLAKSISVTGVGLHSGERVALTLHPAPENSGISFRRTDLDGEMGETIKLTPYLINDTRLSSTIVTDKGVRVGTIEHIMSALSAYGIDNALIELNAPEIPIMDGSSLPFIYLLQDAGVVDQKAQKRFLKILKPVEVKEAGKWVRFTPYNGFKVTLTIEFDHPVFNRSSPTFEIDFAGKSYIDEIARARTFGFMHEVEMMRAHNLGLGGNLNNAIVIDDMDVLNPEGLRYPDEFVRHKILDAIGDLYIVGHPIIGAFEGYKSGHAINNALLRAVLADETAYEWVEFADDEDLPSAFHELPAA*	mmseqs_cdd	nonviral_gene	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0001	persistent	direct	high	914	0.999	GCA_003028315.1_02133
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2246676	2246768	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	1050	1142	GCA_003028315_1_1_2068	GCA_003028315_1_1_2068	-	2688408	.	.	hypothetical protein	MDKMCIKFEKKYNLFIFHKDRLDSHVDNHV*	.	hypothetical_protein	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0002	.	unmatched_CDS	none	0	0	.
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2246885	2247832	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	1259	2206	GCA_003028315_1_1_2069	GCA_003028315_1_1_2069	-	2688408	.	PFAM:PF01548.16	Transposase	MYYLGIDVSKKTIDCCLISDSIFYERRFDNTEDGFGRLDDWIQEYTAEAVHCCCESTGIYHEAIAAHLRQKHTVSIVNPSKIKGFREAEQTRTKTDRQDARLIAEYCRRMQPQAWQPPTEEQEYLQAITDYIARLKQQRAAEQTKHQTAPDTIRHHIQTTIDHLNRLIATVQNELKDFYRQNPIYNEKKNRLKTIDGIGESAASALLAKLIRYDFANQNQFAAYLGLDPKIKDSGTSVKGKSRISKQGQKNARKALYMPALVAYRMNAFPAFTARLKARGKPPKLIIVAIMRKLAVIAYQLYKTGKDYDRSRYRN*	common_virus_hmm	common_virus	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0003	cloud	direct	high	947	0.999	GCA_003028315.1_02134
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2248195	2248386	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	2569	2760	GCA_003028315_1_1_2070	GCA_003028315_1_1_2070	-	2688408	.	.	hypothetical protein	MNALEFVISCLVVYAIIHIHRKHGTAYFKMLIKEFGIFIFGLAIIFLVLCAAGVLMFAAQSHT*	.	hypothetical_protein	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0004	.	unmatched_CDS	none	0	0	.
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2248394	2249569	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	2768	3943	GCA_003028315_1_1_2071	GCA_003028315_1_1_2071	-	2688408	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MLYLFTGVPGSGKTLQVVSMLAKRKDFKNRPLFIDGIPDLKIPHEEIPEGESIKTWPKWAPDGAIIVVDECQRIFRPRSSSSAVPDYVAELETHRHRGLDFLLITQHPRLIDVHLRSLIEHHTHFGKTNLGLRRKLEWTTGGAKEPESRANIKEALVSVYKLDKSVYGLYKSAEEHTKIRTKRSKVLYLIPVAIAMLGGGLYYFASFWKNLEKPIETAGQTAQAHIAAPAASPEAQAAAAPAADDGAAGRYAAAKVQTPSEPPKPHLTEEDYKPRIEERPETAPIYDGMNKAVKVMPWPAACIKAENRCTCYTDQGTKIKDIGKQTCLNYVKDGLPFNPYKAQTAENAKPTQTAYTPDAPQVLTMGGQIPQNLMYDGYNDKALTNVGGKIN*	hallmark_hmm	common_virus	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0005	cloud	direct	high	1175	0.999	GCA_003028315.1_02135
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2249579	2249860	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	3953	4234	GCA_003028315_1_1_2072	GCA_003028315_1_1_2072	-	2688408	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MNWASLITGVLMSVAGRILTAVGLSFISVTGLNSLQSYFINEISRSIGGFPDEALQILYIAGFGVILNWIFGAFSFVISLKGFKKLSTIIQSK*	hallmark_hmm	common_virus	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0006	cloud	direct	high	281	0.996	GCA_003028315.1_02136
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2249862	2251643	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	4236	6017	GCA_003028315_1_1_2073	GCA_003028315_1_1_2073	-	2688408	.	PFAM:PF05616.12	attachment-protein	MKNDTRISVFTGYGKAPNISRLSVCLGSLLVVGQAWADAGLPPPAQHQGAGFPSEQALRQKGYDPKTGVWRVQSQNNGRPTVTKSGDTIKGSQPKTVTVTGNYGEKGTIRTTQTQTVSSSKLQNTINGVWAGGALAASVDKHSGLMGARIRSGDYKGAVESGVLMAGTFGNNLFGGIAESLGNLGRGLGLIDSPSPQDLRQAGERFYQWQMQKEQSGQLGEAVAAAAARKAAEGAAEAAKQQEQWQKAKESQKENGLYPVNVIFREQSPTGKIYYSNKIYYSYLKNFYNNNNGVNQGGSAKIYLRGVQGDYVYYQFKDKNSSTVGVEASSTFKPDPQKTVENMTLNQKDIKDILERMLNNQQTNHAELMNQLSKIGDSVEKSTISNEFTPMTADSAPYTPQGSNTPQQTRFTINRDGSITTTIIPRPDLKPNSTLAPTRSEIIPTPNKGQNTPTTPNSPNTPTTPDSPNVPTTPNIPNTPNNPTGQQNQNQENQKQDFCQQNPNAAQCMPGGDASYEDIVLPENTIDLDFKPLDVFQSDGTCPAPRSVDFGALGQVEFSYDPLCDLARKLRPIFIAICVLTCAYFVYESVKEL*	common_virus_hmm	common_virus	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0007	cloud	direct	high	1781	0.999	GCA_003028315.1_02137
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2251633	2251935	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	6007	6309	GCA_003028315_1_1_2074	GCA_003028315_1_1_2074	-	2688408	.	.	hypothetical protein	MGYQVGRICHETAEQAKNEVMTQVVPTIDKDGVLHHPVFNGQTWTYNEQTVKLQFPQCDSMKYYRLGEQIGIQMMFVMISLFAVVVIVKLVLWQRERNEE*	.	hypothetical_protein	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0008	cloud	direct	high	302	0.997	GCA_003028315.1_02138
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2251944	2252165	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	6318	6539	GCA_003028315_1_1_2075	GCA_003028315_1_1_2075	-	2688408	.	CDD:PHA00979	putative-major-coat-protein	MSIKTKFQKAAAFVTVSALPVMAFAEDSGMVEAAKTELGGLKTGIIAVGAVAVALAVAAVSISVIKSAVKRSA*	hallmark_hmm	common_virus	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0009	cloud	direct	high	221	0.995	GCA_003028315.1_02139
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2252253	2252522	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	6627	6896	GCA_003028315_1_1_2076	GCA_003028315_1_1_2076	-	2688408	.	.	hypothetical protein	MSQENERKQGIFVIAAFDRMFTRERKNQDGTFSKTHYVGLIIRSDTETRLCEVRTKHPEKYEQYKPQQIVSMQVFPRAFKDNIYYSDEA*	.	hypothetical_protein	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0010	cloud	direct	high	269	0.996	GCA_003028315.1_02140
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2252543	2253478	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	6917	7852	GCA_003028315_1_1_2077	GCA_003028315_1_1_2077	-	2688408	.	PFAM:PF05840.12	Rep-protein	MFLQQQIEFQQQAAAKRAVLPCLNSNNCIDEKNTNVIKEKQKPASIEKYLPNTAKPEFNEFSTSHKKSAAALEMNVRQFIEVFGIEKVGFLTLTFADEVQDVKEASRRFHSLRTNFLKKHFEHYVCVYERMKSGRIHFHLIVNTREDIRRGLNFQQIQARNYTSANKNLRQLWQVLRENMEKYGFGRSELLPVKTNSKGLARYVGKYIAKHIDSRLPEDKGYRLIRTTIDKKQLWKIANSNFSFVSAGSRQWREKLQKWVICIEPLLQAHAELFYERKPKKITEDNYNAVLSALLSPKWAFYNRETIINMP*	rep_hall_hmm	common_virus	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0011	cloud	direct	high	935	0.999	GCA_003028315.1_02141
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2253632	2253814	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	8006	8188	GCA_003028315_1_1_2078	GCA_003028315_1_1_2078	+	2688408	.	PDB:4U7B_B	Mos-transposase	MESFFAVLKTECFYNAGELTVDELMKQIDDYMDYYNRERCSLKLKKLSPVAYRTQLAQSA*	common_virus_hmm	common_virus	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0012	shell	direct	high	183	1.0	GCA_003028315.1_02142
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2253896	2254861	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	8270	9235	GCA_003028315_1_1_2079	GCA_003028315_1_1_2079	-	2688408	.	PDB:3VQ6_A	RNAseH,-DNA-binding,-DNA-cleavage	MSYTQLTQDERYHIQYLSRYCTIAEIAKQLNRHKSTISREIKRHCIQGQQYSAEKAQKQSRLTKQHRRKPYKLDSQLIQHIDTLIRRKLSPEQVCAYLHKHHEITLHHSTVYRYLRQDKSNGGTLWQHLRICSKPYRKRYGSTWTRGKVPDRVGIENRPAIVDRKTRIGDWEADTIVGKNQKSALLTLVERTTRYTIICKLKNLKAEDTARAAIRVLKAYKARVHTITMDNGKEFYQHTKIAKALKAETYFCRPYHSWEKGLNENTNGLIRQYFPKQTDFRNISNREIRRVQDELNHRPRKTRGYETPSVLFLNLFQPLVP*	common_virus_hmm	common_virus	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0013	persistent	direct	high	965	0.999	GCA_003028315.1_02143
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2254965	2256359	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	9339	10733	GCA_003028315_1_1_2080	GCA_003028315_1_1_2080	-	2688408	.	COG0008	Glutamyl- or glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. 	MTVKTRFAPSPTGYLHIGGVRTALFSWAFARHHKGEFLLRIEDTDLARSTAESVNIILDGMKWVGLDYDNADNVVYQTRRFDRYKEVIAELLEKGAAYYCYCSKEELEAMREKAEKEGTATYDRRWRPEAGKTLPEIPADVQPVVRFKTPLDGVTKWTDLVKGEISIPNEALDDLIIARADGTPTYNFCVVVDDYDMGVTHVIRGDDHVNNTPKQINILKAIGANLPEYGHLPMILNEQGKKISKRSGDTVAITDFGAMGILPEAMLNYLARLGWAHGDDEFFTMEQFIEWFDLKDVSPSPSRMDLKKLYWINGEHIKITPNEKLAELVKPRLALRDIYDTAKPALEDVLALVKDRAQDLNTLADECLYFYVKQTPAEADVQKHWDDEAATRMLRFAERLEGLEDWNAEAIHDLFKPFCDEEGIKMGKLGMPLRLAVCGTAKTPSVDAVLALIGKEEVLKRIRS*	mmseqs_cdd	nonviral_gene	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0014	persistent	direct	high	1394	0.999	GCA_003028315.1_02144
GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote	cenote	CDS	2256508	2256837	GCA_003028315.1	CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315.1_CP028150.1	GCA_003028315.1|CP028150.1	GCA_003028315_1_1	GCA_003028315_1_1@C164	10882	11211	GCA_003028315_1_1_2081	GCA_003028315_1_1_2081	-	2688408	.	COG0545	FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]. 	MSGLIIEDLQEGHGKEAVKGKEITVHYTGWLEDGTKFDSSLDRRQPLTITLGVGQVIQGWDEGFGGMKEGGKRKLTIPAEMGYGARGAGGVIPPNATLVFEVELLKVYE*	mmseqs_cdd	nonviral_gene	C164	11211	2245627	2256838	GCA_003028315.1|CP028150.1@region_2245628_2256838@tool_cenote_CDS_0015	persistent	direct	high	329	0.997	GCA_003028315.1_02145