core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	13433	13756	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	1	324	GCA_003044665_1_7_13	GCA_003044665_1_7_13	-	95461	.	PF06305.11	Lipopolysaccharide assembly protein A domain	MKLISTIIKILILLVFLLLAITNTHTVSFFYLPGQNINLPLIVVLFGAFIIGIVFGMFALFGRLLTLRSENNRLRAEVKKYAHLSEKDLTPVKTEIPATASDTAPKA*	hhsuite_tools	hypothetical_protein	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0001	persistent	direct	high	323	0.997	GCA_003044665.1_01495
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	13877	14968	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	445	1536	GCA_003044665_1_7_14	GCA_003044665_1_7_14	+	95461	.	TIGR01123	branched-chain amino acid aminotransferase, group II. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family less similar to the DAAT family. [Amino acid biosynthesis, Pyruvate family]	MLTGTCQTHIERRIVQSLVIILQIRIRKAIIMSRPVPAVFGSVFHAEMPVIAYREGKWQPVEWQSSKDLTLAPGAHALHYGSECFEGLKAFRQANGKIVMFRPTANIARMQQSADILHLPRPETEAYLDALIELVKRSAEEIPDAPAALYLRPTLIGTDPVIGKAGSPSETALLYILASPVGDYFKAGSPVKILVETEHIRCAPHMGRVKCGGNYASAMPWVLKAKAEYGANQVLFCPNGDVQETGASNFILINGDEIITKPLTDEFLHGVTRDSVLTVAKDLGYTVTERNFTVDELKAAVENGAEAILTGTAAVISPVTSFVIDGEEIEVKSQERGYAIRKAITDIQYGLAEDKHGWLVEVC*	mmseqs_cdd	nonviral_gene	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0002	persistent	direct	moderate	998	0.914	GCA_003044665.1_01496
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	15102	16445	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	1670	3013	GCA_003044665_1_7_15	GCA_003044665_1_7_15	+	95461	.	PFAM:PF02486.18	Replication-initiation-factor	MKKEILEREAATDGLAAAPADGGTDGVASYSPPSSNRGGTESEDAGTFQEAFECYETYILDGKGNLLGVPLRRGVSDSAFIDQISFSFHEKTFFDKYGVRVSLLEDEDFIRAASMLAEEVFGFGIYKESKGSGGRFYERCWLMGSEDALYGRVHFGGQQNTILFELTGTGCGVAKEGWESRLFALLTNAIRPKITRVDVAKDFFNGEYSPNQAREDRNKGLFTCHHVKPKGECLGSDWEEDDEAKMTKGKTYGIGSRESSKYVRVYEKGKQLGDKTSTWTRFEIEFKAKDIVIPFEVLQNPGEYFGGAYPICERFAQKATRIHAVKEDKVISADRYLEWVKKQFGRAANGLKFIFPELDKAKLFELIEPNHHKLPKSLAPEAYDCAFLKAQAIHDQPAFKPYKDPYGMYEYYERLEKQLEQQKHVTNEESYNNFMYDKFARQPISWA*	rep_hall_hmm	common_virus	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0003	shell	direct	high	1343	0.999	GCA_003044665.1_01497
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	16491	16781	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	3059	3349	GCA_003044665_1_7_16	GCA_003044665_1_7_16	+	95461	.	PFAM:PF07459.10	RstB-protein	MNIQLQGHIVGVKKFNGQIEGKNFDYCRLIVATPLDSSQGNALGSSTTEYDFGGSANFEQFRNAQFPIEANLNVEIVTTGKTQKLKVIGFQPVKKG*	common_virus_hmm	common_virus	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0004	shell	direct	high	290	0.997	GCA_003044665.1_01498
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	16786	16983	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	3354	3551	GCA_003044665_1_7_17	GCA_003044665_1_7_17	+	95461	.	.	hypothetical protein	MQKVYVVQSVSTGDFLYLSPETGDIGHTKLITNADYFYDFEEAINAGLEEIGNQYEFVVFGFLKD*	.	hypothetical_protein	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0005	shell	direct	high	197	0.995	GCA_003044665.1_01499
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	17056	17286	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	3624	3854	GCA_003044665_1_7_18	GCA_003044665_1_7_18	+	95461	.	CDD:PHA00979	putative-major-coat-protein	MKLMNTCRKYGAKLAVVAAAPLALANQALADTNLLDTASTEIGALKTGIVAFGVVVVGIAIAIVSIGLVKRVINKA*	hallmark_hmm	common_virus	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0006	cloud	direct	high	230	0.996	GCA_003044665.1_01500
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	17295	17597	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	3863	4165	GCA_003044665_1_7_19	GCA_003044665_1_7_19	+	95461	.	.	hypothetical protein	MGYRVGQICYGTQIEAQNHVMSQVIPTIDKDGVLNHPVFIGSAWEYHGNQVKLNFPQCNNQDFYDQGRELGQSMLLAFIGLFIVVVCLKVVKLANMQNEE*	.	hypothetical_protein	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0007	cloud	direct	high	302	0.997	GCA_003044665.1_01501
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	17613	19433	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	4181	6001	GCA_003044665_1_7_20	GCA_003044665_1_7_20	+	95461	.	pfam05616	Neisseria meningitidis TspB protein. This family consists of several Neisseria meningitidis TspB virulence factor proteins.	MNDTRSLFYSRRFALRSRLLVLVCFGAQVLSPLTAFAEVGLPPPVQHQNAGFPSDQALQRRGYDPKTGIWKVDVQNNGKPTVTKNGGNINGSQGKTVTVTGRYGETGTMNTNVNQRVNVGKVETVLGGTLAGATAMGGAIGSDYAAWTYRDIKNGDWAMAARNGVGAILTGLSKLDITGLGSGINTFLDKTGLRDGASQEQISNAIQKAAQAQKQAEAEGNYQKAVAEAAAKKAAEAAQKAQQQDQKKKEEQKKDEEAKKKGLLKYQLIVEVDGSYQNYVFYAPDGYRLSGSDDNTLDHAPSYLGKFVSSYNIDIGKSASPSQIKVSTPSDKHVFVRWNSYKEGTVPKSEEKKIAQNQSQVKPEDFMLTQKEMLDILKRMLENNQTNHAELMNQLAKMGVMNQSSESSTFSPDTALSAPYTPEGSSTPQQTRFKMNQDGTVGVDYVPRPDLKPNSPEAPNKPEKTTPSRQESPDTPNAPNSPNSPNTPNEPNSPNSPNNQQTPRQQENGLCSLFPNIAACADMGNAEEKDLNIPQNDQDIGTLKPLEHFQTDGVCPKPQSFDFGLFGRFEMGYDTICDIARKIRPILILICMISCSWAAWSAVKEL*	mmseqs_cdd	nonviral_gene	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0008	cloud	direct	high	1820	0.999	GCA_003044665.1_01502
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	19435	19713	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	6003	6281	GCA_003044665_1_7_21	GCA_003044665_1_7_21	+	95461	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MWSKLLTAVLTTVAGKIMAAFGLSFVTYVGANELQQQLLSYVTNQIGGISDDALQILYITGMGVCLNWIFGTFAFIASLKSFAKLSAVMSKK*	hallmark_hmm	common_virus	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0009	cloud	direct	high	278	0.996	GCA_003044665.1_01503
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	19741	20904	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	6309	7472	GCA_003044665_1_7_22	GCA_003044665_1_7_22	+	95461	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MLYLITGVPGSGKTLKMISDLMTRDDLKNRPLYLDGIPEVDGQIIPNLPIPEGETMQTWHKWAPTGAILVIDECQRVFRPRPSGSKVPDYVAELETHRHKGIDIFLLTQHPRLIDANVRSLIGHHCHIGKTSLGVRRMVEWERCANPEANGDIANGVKSVYKLDKKAFGVYKSAEEHTKIKTKRSKVIFILPLVLIVIIFSMFIAYGSYKDISKPIEVKKTIETDSNQTPQNTQTAQPQIEQSGQYPQQEPKTTEKEEEKPYITQQDYEPRIAERPETAPIYDSMNKAFKAMPWPSACIKSEKGCNCYTDQGTKIKEISKKTCVQYVNDGLPFNPYKTKQPESAATEALKAQHETPQVLTMGGKSPQNLMYDGYEEKALSNEGGKVN*	hallmark_hmm	common_virus	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0010	cloud	direct	high	1163	0.999	GCA_003044665.1_01504
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	21443	22393	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	8011	8961	GCA_003044665_1_7_23	GCA_003044665_1_7_23	+	95461	.	PFAM:PF01548.16	Transposase	MYLGIDVSKLTIDCCLISDGQNHEKRFSNNPKGFQLLTDWLKFHQMTSELHCCCEATGIYYEPLAHYLHQHYTVTVENPRRIKGYAIAELQRSKTDKQDARLIAQYCQDRKHKLKAWIPPSQEQKQLQELARYLDHLKQQRATETTKLHEAPDYIAPHIKTTIENLSSQIRDIKKQLLQFYKSHPDYNTKRKRLKTITGIGEQSAAVLLSAYKRHPFSNQKQFTAYLGLDPRKNQSGSSVNGKSRISKIGNADIRKSLYMPAVVAYRCNVFSSFVNRLKVKGKPIKLILIAIMRKLAVIAFNLLNNGQDFEPERYK*	common_virus_hmm	common_virus	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0011	cloud	direct	high	950	0.999	GCA_003044665.1_01505
GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote	cenote	CDS	23210	25828	GCA_003044665.1	POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665.1_POXO01000007.1	GCA_003044665.1|POXO01000007.1	GCA_003044665_1_7	GCA_003044665_1_7@C2	9778	12396	GCA_003044665_1_7_24	GCA_003044665_1_7_24	+	95461	.	2PYH_B	Poly(beta-D-mannuronate) C5 epimerase 4 (E.C.5.1.3.-)	MSHKLAPLGRTHIRQGSSTPETTSESSSPLKEWIHTQNFGGSPSVFPEPKQLSGKNTVTRDAVHVAEAARLNSTSSSSDGVVTKMRVVRASVASASNVSGKNTIASKVTDKQVVSKEPVNKPVNQSMEKILAEKQKKYEEAKAKKIAEAATAKANAVEHAKEAHKAAVEKAIAERKAKQDAARKEKEAEDRIAEGKKTVEIVHKKILNDSDGHNKVVSVSSGKKTAMSHDSHLSSVKENKIDDHTENRAGVSGKYRVYQSKEYGNYVRVNDFGADAQGKKDSLQAFKAALEAAHKEKAMVFLDGTYYISNQIVMDKTVSGARGLFGSGMGKTKVTFDKAQTGVFNPNTNHDDIRQFAGILIDGQNNKTIANLSVQYTNPDFYRKGLSYFGKVNGILVNDADNTLISKVEVSGANRAGVMFTSTASLEKEKGQKLTFKERVQSGEIDEKYEALPLGENNRIVDSYLHHNRVAGALIGFQQNFIGEGNRLDWNGHEADGGTGYGMAVVAGSYNYGVTYRKNTTNHNYRKGLDVHDGTGIVIEDNVLTGDRLYGIAAYNRQFSMDKVKITGNTIIQDPSFRLNVDDDLGKYYHMYSGIQVQTNTQYKDLYSANKGYFDISNNVIKNLTVYQNNIQTYAIEFRNHESKMDYTLNMANNKISGESTKYLIAVINDTYDRVLSKNGIGSGTITISGNDADIGKIMKGAVPVYVEEHHGNVAMHGAVTIHNNKISVREKSDGYVEFAYLKSNAKEYNITNNTLKLGGALDDVLVDVHSTSPKGKASLNVANNKIMTDIKDELYDSWLRFENNIKTYSEGNSHNGEALTKVNTTGSKVVLSDILSEASYIVATTKDTVYHHTKNVYTSGVEEHHTTTGIL*	hhsuite_tools	hypothetical_protein	C2	12396	13433	25829	GCA_003044665.1|POXO01000007.1@region_13434_25829@tool_cenote_CDS_0012	persistent	direct	high	2619	1.0	GCA_003044665.1_01506