core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	197655	198215	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	1	561	GCA_003044785_1_2_202	GCA_003044785_1_2_202	-	308996	.	CDD:PHA02536	portal-vertex-protein	MDVPRYFIDAARAGVPYYLAALSSIELNSAATKFRVRYYRNGSHAGFILYATDDKIDEAGWALVKQELRKAKGGGNFNNLLLRAPNGNPEGVKLIPIAEVGAKDEFLNIKGVSAEDMMTAHRVPPALMGIVPKATSGLGDAITAAKVFARNEVASLQQTFLDVNDRLGIEVFRFDEYVVERSDAAA*	hallmark_hmm	common_virus	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0001	cloud	direct	high	560	0.998	GCA_003044785.1_00570
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	198270	198557	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	616	903	GCA_003044785_1_2_203	GCA_003044785_1_2_203	+	308996	.	.	hypothetical protein	MVDALRNGRIGAGLLGRVKGVLSGRPAAGTARRPAPAAMPAFQTAAAAPSFGGITININAGGQSAEYVAQAVRRELEKWQAAAARRTRSSMKDRD*	.	hypothetical_protein	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0002	cloud	direct	high	287	0.997	GCA_003044785.1_00571
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	198559	199014	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	905	1360	GCA_003044785_1_2_204	GCA_003044785_1_2_204	+	308996	.	COG3499	Phage protein U  [Mobilome: prophages, transposons]. 	MVLQGILGQFVFINATVPFQEFSRSQSWKHPSQGIVGGGLPPVQYTGRDNDEITISAELRPEITGGANSIEYLRRMADTGKPHPLILGNGRLMGSFVITAVSENGSEINRDGTARAISFSMTLKKVSDSALGVKGVALQLAVTLARGLTGI*	mmseqs_cdd	nonviral_gene	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0003	cloud	direct	high	455	0.998	GCA_003044785.1_00572
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	199017	200288	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	1363	2634	GCA_003044785_1_2_205	GCA_003044785_1_2_205	+	308996	.	PDB:1WRU_A	Tail-protein	MDVIGKLGGLIEQAEQKAVGIVEKYLPPPVAGSHLTPQALLKINGREFGTETQSRILGISLTDKRGFEADELTIELSDHDGALAIPDIGDKIQLWLGFKESGLVYKGEYLFAEFTHSGSPDTLSITARAADLAETLAEQKEKSWHKTTLYEIVETVAKTHGYPYSISAGYKNEKIAHIDQTNESDAAFLTRLAEQYDAVATVKNGRLLFIRTGQAETAGGQPIEEQPISRASGDGHSFTYSAANAYAAVRACYTDKKTGQKKEVLVNEENLYPEKVKVAQTKPYKRPRKDKATGKTVTGKTTVKTVEKKKNIDVAGKKVKTLRHLYATEAAALAGARAAFARIRRGLAEFSISLATGRPDLYPETPVTVQGFKAEIDAESWLIVEVAHRLGDSGYTCSLKLEARLKEERAGEEAEGKGKNGQA*	hallmark_hmm	common_virus	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0004	cloud	direct	high	1271	0.999	GCA_003044785.1_00573
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	200336	200548	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	2682	2894	GCA_003044785_1_2_206	GCA_003044785_1_2_206	-	308996	.	3ZBE_A	PAAA2	MTNDKIGFRLSLHSSKARIALFEAEREDARYTEWLNRKVDRNLSDSRPAVPHDEVMARLDAAIAAARKGS*	hhsuite_tools	hypothetical_protein	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0005	cloud	direct	high	212	0.995	GCA_003044785.1_00574
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	200538	200978	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	2884	3324	GCA_003044785_1_2_207	GCA_003044785_1_2_207	-	308996	.	.	hypothetical protein	MNQPDNWFYVYILPLTPAALTIAGWAFLSRREKTKRISERKSKRIETAAALTEKITAAAVAYYLSQAAGSEAAAQEILFDLHRLGRLCGKISQDLNSSLIRLRTAVSGGSFQSASRVPASPADPLVYAVKKAGADLIMALDDYHDE*	.	hypothetical_protein	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0006	cloud	direct	high	440	0.998	GCA_003044785.1_00575
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	200975	201301	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	3321	3647	GCA_003044785_1_2_208	GCA_003044785_1_2_208	-	308996	.	pfam14213	STAS-like domain of unknown function (DUF4325). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 99 and 341 amino acids in length. This domain is distantly related to the STAS domain.	MKDNIMIVNVARDFSAFPAGRYLTDGPYSGEHFLKGNLLPALRQADKVRIVLDGAMGYGSSFLEEAFGGLVRLQEWPLSDLLKRIELVSDEEPALVDEIKGYMREAAK*	mmseqs_cdd	nonviral_gene	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0007	cloud	direct	high	326	0.997	GCA_003044785.1_00576
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	201298	202389	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	3644	4735	GCA_003044785_1_2_209	GCA_003044785_1_2_209	-	308996	.	.	hypothetical protein	MKKPTDRYRLRLRRLAYYRLCCDRHRRLLRMRRKRQLGQYGGRLVRLSAPECFSLSGKDAARLVEFVRKLRQAVLPGFGRVEIKFSHTEKMAADGTLYFLANLEQMRLLYPKVSFSMRPPSDAVAAQVLQHVGIARILGGHRPQKKPLHPSVRHWYKASGNNVDASEAQNVFGSFEGRITPELSKSVYKGVSEAMTNCCHHAYADHALPPHLRKWWLFSREDKGELHVVFCDLGIGIPRSLFREDEKVARDWMERLKDWLAERVTDWRQADDALKIKAAVEIGQTRTGLPHRGKGLKQMVGFLDEIGNNSAKVTIYSGGGVYRRMPKKGRPQEFTHALSDKKNAISGTMISWSIPLPDKEAIL*	.	hypothetical_protein	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0008	cloud	direct	high	1091	0.999	GCA_003044785.1_00577
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	202392	203090	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	4738	5436	GCA_003044785_1_2_210	GCA_003044785_1_2_210	-	308996	.	PDB:2FJR_A	Repressor-protein-CI	MSSPVLRAKKALGVETDTALAKALGVAQSVIGGYNRRNTVPLEQCIKIAERTGVSLDWLILGKGEMKGGSAAPERKKSVMEEVWAALEENRSPFPDVAFVPLFDAEVGAGNGIEVYGENIIQLIPFSQSWLAAEGLYIRDLACLPVNGDSMIPSLTSGDIVLVNHAKRDGDGVFVVRMGNALRVKRLQWLANGDLRISSDNPIYQTEQITPADLAGGFDILGACHTRISRVG*	common_virus_hmm	common_virus	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0009	cloud	direct	high	698	0.999	GCA_003044785.1_00578
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	203236	203430	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	5582	5776	GCA_003044785_1_2_211	GCA_003044785_1_2_211	+	308996	.	2K1O_B	Putative	MSSENINTAGVPARPNIINVRFSAAEKAVIVEAANQQHLHISTFIRQAAMKTAERIGVETVQPS*	hhsuite_tools	hypothetical_protein	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0010	cloud	direct	high	194	0.995	GCA_003044785.1_00579
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	203440	204081	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	5786	6427	GCA_003044785_1_2_212	GCA_003044785_1_2_212	+	308996	.	PDB:1Z19_B	Integrase	MRNITNMGVKKFKETGRDVYVSDDLFWRVFRCADYHIRQLMLVAYLCSQRVSDTLNLKVSDFREGALWVRQAKSGQRLRVALVGEFAEVVEQIMAEREDAKHDFLFSRNGRRISYNQLRYGLDKARRLAGVEKDEFQFRDLRAKAGTDKDEEAGLSAAKDLLGHKNSSMTVHYVRHRKGKLVNPTRMGKFRDYVEQDGKCRTNEQACGNEKTT*	common_virus_hmm	common_virus	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0011	cloud	direct	high	641	0.998	GCA_003044785.1_00580
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	CDS	204357	205460	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	6703	7806	GCA_003044785_1_2_213	GCA_003044785_1_2_213	+	308996	.	COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]. 	MNIDHTQQNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDEYCSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYAIEQGADAIATGHYARKEVRNGTHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGDLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTNNGKMVTPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLSFTLPERPREGRYTCKTRYRMVDAPCELRYLDDETVELVFDEPQWAVTPGQSAVLYDGDVCLGGGIIMSTDKPVIITR*	mmseqs_cdd	nonviral_gene	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_CDS_0012	persistent	direct	high	1103	0.999	GCA_003044785.1_00582
GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote	cenote	CDS	61473	62654	GCA_003044785.1	POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785.1_POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785_1_4	GCA_003044785_1_4@C8	1	1182	GCA_003044785_1_4_61	GCA_003044785_1_4_61	+	236817	.	PRK10378	inactive ferrous ion transporter periplasmic protein EfeO; Provisional	MKMNHIALSVLLAMGLAACQPPEADKPAAPASGDTASAGKPAAPNADGSVNIAVNDSACEPMELTVPSGKTTFNIKNNSGRKLEWEILEGVMVVDERENIAPGLSDKMTVTLLPGTYEMTCGLLTNPRGKLIVTDSGFKAEAAQADMNKLAQPLADYKVYVQGEATALSEKTEKFVAAVKAGKIDEAKAMFADVRTHYERIEPIAELFNELDPAIDAREDDFKEQAKDPNFTGFHRIEYALWVEKSTDGVKDIADKLEKDVKALKAEIDTLNFPPSKVVGGAAVLIEEVAGSKISGEEDRYSHTDLSDFQANIEGAQKIVDLFRNVIAEKDKALLDTVDANFKQINEILAKYKKGDGFESYDKLSEEDRKKLQAPINTLAEELGKLRGTLGLN*	mmseqs_cdd	nonviral_gene	C8	5160	61473	66633	GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote_CDS_0001	persistent	direct	high	1181	0.999	GCA_003044785.1_01003
GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote	cenote	CDS	62955	63467	GCA_003044785.1	POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785.1_POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785_1_4	GCA_003044785_1_4@C8	1483	1995	GCA_003044785_1_4_62	GCA_003044785_1_4_62	-	236817	.	PDB:2G1P_A	Adenine-specific-DNA-methyltransferase	MAGRNPQTIKRLRGGVVRTVLRASLSSDSLHQPFLPSPAGEADFTTSKAWDASQIRAKLTAARNRLSGVFIENEPWERCFKRYDREHTFFYADPPYWQTAGYDRAFDWAQYQLLAKVMSESKGKIMLSINDHPDIRNLFKDFRIAQFELAYSIGRSKTGKTSGELAICNW*	common_virus_hmm	common_virus	C8	5160	61473	66633	GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote_CDS_0002	shell	direct	high	512	0.998	GCA_003044785.1_01004
GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote	cenote	CDS	63754	64224	GCA_003044785.1	POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785.1_POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785_1_4	GCA_003044785_1_4@C8	2282	2752	GCA_003044785_1_4_63	GCA_003044785_1_4_63	-	236817	.	PDB:1OCY_A	Tail-fiber	MHFAMQSAPTGWLKADGSAVLRTQYPALFAAIGTTFGVGDGRTTFNLPDLRGEFVRGWDGGRNIDPGRAFGSAQGDAIRNITGSIDTGINSGHQLFDEATATGALAISQRRWKAWTSDTQDGRNNPSAFDFDASRVVPTAAENRPRNIALLACIKI*	hallmark_hmm	common_virus	C8	5160	61473	66633	GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote_CDS_0003	shell	direct	high	470	0.998	GCA_003044785.1_01005
GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote	cenote	CDS	64388	64543	GCA_003044785.1	POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785.1_POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785_1_4	GCA_003044785_1_4@C8	2916	3071	GCA_003044785_1_4_64	GCA_003044785_1_4_64	-	236817	.	PDB:3J9Q_Q	tail-sheath-tube	MAAAYHHGTETIRIDGGSNPVYTVDGAITAIVGTAPVGAVNELTVCQTKKD*	common_virus_hmm	common_virus	C8	5160	61473	66633	GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote_CDS_0004	shell	direct	high	155	0.994	GCA_003044785.1_01006
GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote	cenote	CDS	64555	64992	GCA_003044785.1	POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785.1_POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785_1_4	GCA_003044785_1_4@C8	3083	3520	GCA_003044785_1_4_65	GCA_003044785_1_4_65	-	236817	.	PDB:2GJV_C	tail-completion-protein	MPTIRGFPERPSEYQFIHPVGAILVGYGGSKFGDIEQLGRIAQQRDLRLMLTVFGSSLNADDGTLAILDETRLAMVGFAPPSCQPCHLISEEFLAEDAGAWQYQLILQTETQQVEVCREEKRPLFTAAHYRRPNQDLNPDLKPKK*	hallmark_hmm	common_virus	C8	5160	61473	66633	GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote_CDS_0005	shell	direct	high	437	0.998	GCA_003044785.1_01007
GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote	cenote	CDS	65021	65332	GCA_003044785.1	POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785.1_POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785_1_4	GCA_003044785_1_4@C8	3549	3860	GCA_003044785_1_4_66	GCA_003044785_1_4_66	+	236817	.	PFAM:PF05069.12	virion-morphogenesis-protein	MLEIKLDADQLDHGLNTLLKNATNTRAIMRGIATELLSMTEENFESEGWGGQRWKQSRRAADEGGKTLQKSGQLAARLTTQVGSNYARIGSNKKYAAIHHLGG*	hallmark_hmm	common_virus	C8	5160	61473	66633	GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote_CDS_0006	shell	direct	high	311	0.997	GCA_003044785.1_01008
GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote	cenote	CDS	65652	66632	GCA_003044785.1	POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785.1_POXY01000004.1	GCA_003044785.1|POXY01000004.1	GCA_003044785_1_4	GCA_003044785_1_4@C8	4180	5160	GCA_003044785_1_4_67	GCA_003044785_1_4_67	-	236817	.	PRK10892	arabinose-5-phosphate isomerase KdsD. 	MQTNDAEQYIEWAREVLQIEADGLKEISDGLNGTFAAAADTILSCMGRLVVMGIGKSGHVGHKIAATLASTGTPAFFVHPTEAAHGDLGMIVDGDVVLAISNSGESDEISAILPALKRKNICLICITAHPESTMARHADIHLTAAVSQEACPLGLAPTSSTTAVMALGDALAITLLRARSFTREDFALSHPAGRLGKRLLLRVADLMHSGDNSPAVTEDTPLKDAVVIMSEKGLGMLAVTDQGGRLKGILTDGDLRRLFQKCETFAGLTVNDVMHPNPKSIAPDRLATEALKEMQQNYVNGLLVVEGDGILVGALNMHDLLAARIL*	mmseqs_cdd	nonviral_gene	C8	5160	61473	66633	GCA_003044785.1|POXY01000004.1@region_61474_66633@tool_cenote_CDS_0007	persistent	direct	high	980	0.999	GCA_003044785.1_01009
GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote	cenote	tRNA	204111	204183	GCA_003044785.1	POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785.1_POXY01000002.1	GCA_003044785.1|POXY01000002.1	GCA_003044785_1_2	GCA_003044785_1_2@C15	6457	6529	tRNA-Met	tRNA-Met	-	308996	.	tRNAscan-SE score: 80.7	Met	NA	tRNAscan-SE	.	C15	7806	197655	205461	GCA_003044785.1|POXY01000002.1@region_197656_205461@tool_cenote_tRNA_0001	.	.	.	.	.	.