core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	82096	82527	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	1	432	GCA_003048765_1_11_83	GCA_003048765_1_11_83	+	309927	.	COG1610	Uncharacterized conserved protein YqeY [Function unknown]. 	MSIREQILADIKEAMKAKDEFKRDTLRTLNAALKQVEVDQRIEMTDEVVLPLLQKEIKKRADSVELYLKGAREDLAKKEQSEIELIKAYLPAQLSDDELKEKIKSIIEKVGKNLGAVMKMAKDEIGASAEAKRISMIAKELLG*	mmseqs_cdd	nonviral_gene	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0001	persistent	direct	high	431	0.998	GCA_003048765.1_00363
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	82946	83818	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	851	1723	GCA_003048765_1_11_84	GCA_003048765_1_11_84	-	309927	.	PDB:1Z19_B	Integrase	MCLNDLFDNYISYYELILSPSTLRSDIATYNKHFKNSLGLRDIKEINFIDIQKFCNDLIKQDYKIKTIKNIVAKLKVIFKLGIKLELINKNPCDFIELPKFDNKRYFDYSIAIQKRFIKAICENTDDNSDIFFFLLHGRRKNEVLSLKFSDINFKTRTYTIPFKINKAKRDMIYKMSDELYTRLYKRYIVAKEQKRLNDYVFINPMTDDKFKDLRKSWASLLKRNNLPKIRLHDIRHLIGTYSINYLKIPIEQVSFTLGHTNIITTQKYITANVKKSQETIEILLNSISV*	common_virus_hmm	common_virus	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0002	shell	direct	high	872	0.999	GCA_003048765.1_00366
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	83821	85161	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	1726	3066	GCA_003048765_1_11_85	GCA_003048765_1_11_85	-	309927	.	PFAM:PF05840.12	nicking-at-origin-of-replication	MRAKNLYGVSPFDVELCQEKLDSQREYMRSFSFVNSLGQVKNLLDISMSANFSPKYYAEVSNRVNVFSSFAIDNFQVPVFLTITLNGCFRGALSGDYSKFKPIDYKYLPNEVKYKAKNAVALSISDLVAVLNYQWHLFIMRYSRRFKKIDRSYIRCFEPHKKDGVPHIHALFYVPAYTLDFMKRIYTNIFYAPQNLKTNAITSEQEKNGELNGFQTSINNPSGYVMKYIQKTFINLKETQDFDELSAWYVKHKVRRFLSSRTKVPLWVYRKINFISSMQDFYHLNDLTNDHRALIEWNKKDDYIYINLPFNKEEIIYLNGRLEHYIGGRLMNFYDRLKINNKVDEDASDDIKNFGSTLKQRQILKICDELFKTEKRVKPVSKMRDYELLNYYQSLGGDVNVQHLAYVENLMFDRNLDNFTRYHEKHDLNAPDIDSFVDRFLICNEF*	phrogs_hmm	hypothetical_protein	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0003	shell	direct	high	1340	0.999	GCA_003048765.1_00367
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	85393	86535	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	3298	4440	GCA_003048765_1_11_86	GCA_003048765_1_11_86	-	309927	.	PDB:5WQ8_J	Type-II-secretion-system-protein	MKSLIKFLILPCLLLNSLFSAEIYTDLLDFARLTSKANNIAIVTDESIHQGEYYFIYQDEVKITISMFRKMLEAKNLYLYKKDNFYYVSSQKLPDYDLRRIDLKNYVVEDVNKILSQFDLNATYATASNSVFFRADDYIFDQVKYAIAKIDKSLEQVTFKLTITETNLKDIKDLGTNLQGLLKPLNHGDLAYYINLITSPYITNSNVIKNDDSAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSYEYKDIGLKINLKPIILSDHIDFDLHLILEDILSQSSSLTPIVSKKELKSSYSLKRGDVLVLSGINKKTIAKQRNGVPILKDIWLLKYLFSVEQDSEINSVLTLTIQIL*	common_virus_hmm	common_virus	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0004	shell	direct	high	1142	0.999	GCA_003048765.1_00368
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	86486	87610	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	4391	5515	GCA_003048765_1_11_87	GCA_003048765_1_11_87	-	309927	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MITYLVGNPGSGKTYYAVFMIYRLFLYEPKKTFLTKFVKPKEKPNYSYCYTNINEFKFELSDKFKKFDFDEFYLGLRNLYALYKTGATDNEVNEKAKELNLFGCVFVLDECHNFFKDKKDEILVWWLTYHRHLYQDIYLITQDLTLVNNEYKRIAEKFYRAVDSSRRLFSKKFRYEVYASFRLYKKDQLEIINIPFLQEVFNLYHSGQSSNKKSFVRFYFFLAVLVLVLLLLYFYFIVMSMFEVEKPVDENIPAFEKIHVPASQTPASSSLFYDNKKPKNNNIELPEIYIYDITCLNNNCHFSDDYHLYPLSLISYISSTHTPLYFYFEPKSHELVKYYYVFDKPVFQNLQKNNKGVSDEKFNQISNSSVSAIK*	hallmark_hmm	common_virus	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0005	shell	direct	high	1124	0.999	GCA_003048765.1_00369
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	87613	88029	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	5518	5934	GCA_003048765_1_11_88	GCA_003048765_1_11_88	-	309927	.	.	hypothetical protein	MPAIIAMIVNLFGFFKWGKVVDFVLRGITFAKMVIINGLLFASILAYVAAVLVILNFIYTKFNYIVDYINNLSIGNDKIVTTSMMVLKSLGAWNALCDVFAIFSPVLLSFFVIYATKIGIFVFKNARDTLLSFIIAKL*	.	hypothetical_protein	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0006	cloud	direct	high	416	0.998	GCA_003048765.1_00370
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	88041	89474	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	5946	7379	GCA_003048765_1_11_89	GCA_003048765_1_11_89	-	309927	.	.	hypothetical protein	MKFLLKLFCLLSLLSSFGFSENTGRGLSGFRNTSLDFYAGSLPSVNASFLSNNFIKIDNDVFQTTSPTYFGFNYSLGISWSGFRADFKNDYLFFYNPSFQKQYTYCQFDKDDNLGCSDEYEKYVGQGDFRKITFSYLERYFLSKFTTCNAGENFNTSLKQCVPACPAGQSWDTENNLCYVDCSDKDLNKFGYPNGTAQGGCVDCSNALSVDQIMRCACSGFGSTYDPGVLLYDHDSPGFVLGSCKSGRQIYFKQRDDKNPDKDKDKKNDNNSTNSSDKDKDNPKPDKDKDNSNPDKKDNNENSNNSSGESGNSSNNNSGGSAGNGSSGGGGTGVETKPNPNYNGNGKEDGKGEEGKGDDAVAQKLDYVDLKKDSDKFNSNFKDALDSVISQAQDFKNSLNDTISKIKDGGLMKFNQSAIPNTCPLTYNVDFSYFRKDITFDICKVIAPASQTLYYFFYVVFFVLFLIVTIKLFLFIF*	.	hypothetical_protein	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0007	cloud	direct	high	1433	0.999	GCA_003048765.1_00371
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	90019	90237	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	7924	8142	GCA_003048765_1_11_90	GCA_003048765_1_11_90	-	309927	.	.	hypothetical protein	MKFLASAKSKVLAGVAAVSVLSSNALAAGMTMAADGTVSGTPDIGPFMGIAGAIIGVLAVVFAVKKGFSLLR*	.	hypothetical_protein	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0008	cloud	direct	high	218	0.995	GCA_003048765.1_00374
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	90333	90812	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	8238	8717	GCA_003048765_1_11_91	GCA_003048765_1_11_91	-	309927	.	.	hypothetical protein	MALNYSSPVWTKHLFGAMLNGVSKINKLKKVLKMQIVKSDYDLKYILKGGLVRSSASGKFEGNDYSSSVRISSSNIYDVVNEKTGFTDEVEQKVIFKIICPDNNTAGLVASAIKEKFRKGEEIPVEGGFPNDQRIITIANPVEYFLFDTKPANKADKKQ*	.	hypothetical_protein	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0009	shell	direct	moderate	381	0.794	GCA_003048765.1_00375
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	90943	91194	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	8848	9099	GCA_003048765_1_11_92	GCA_003048765_1_11_92	+	309927	.	PFAM:PF07141.10	terminase-small-subunit	MTNAEIAKKLKIAEKTIYNWRKNRKELFEVIEDGLNLKENKESIYVNDTYKELIDLLEKLSQQEIQYYISDIKTRILKKEIDK*	phrogs_hmm	hypothetical_protein	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0010	shell	direct	high	251	0.996	GCA_003048765.1_00376
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	91191	91619	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	9096	9524	GCA_003048765_1_11_93	GCA_003048765_1_11_93	+	309927	.	.	hypothetical protein	MRKLLILIIAIINLNAINIRPVQEQKYCKENKDRSKTEQEKIIYEIRCKETLSEKFMKEINNKVKEVKEELNKKGLDTSEKFEISLNEKEAVKSIIEAEIQKIYLQYKERYKNSPEVMEINFWKIQIDEQKDQKKKLEIIMK*	.	hypothetical_protein	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0011	cloud	direct	high	428	0.998	GCA_003048765.1_00377
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	91621	91899	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	9526	9804	GCA_003048765_1_11_94	GCA_003048765_1_11_94	-	309927	.	COG3636	DNA-binding prophage protein  [Mobilome: prophages, transposons]. 	MKEEFTKFNLEDYLTTDELRKEYLNQVLADGDIEEFKRALFYIAKSKGIENVAKKANLNRESFYKMFKENSKPRFESIFKVVNALDIKLVYA*	mmseqs_cdd	nonviral_gene	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0012	shell	direct	high	278	0.996	GCA_003048765.1_00378
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	91896	92189	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	9801	10094	GCA_003048765_1_11_95	GCA_003048765_1_11_95	-	309927	.	COG3657	Putative component of the toxin-antitoxin plasmid stabilization module [Defense mechanisms]. 	MKVLKSSTFDKWLHKLNNPIVKVSILRRLEQIETKDHLGDYKFIDTDLYELRFFNRGGLRIFFTFNGNEIVILLNAGDKDSQSDDIKKAKEILKDYK*	mmseqs_cdd	nonviral_gene	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0013	shell	direct	high	293	0.997	GCA_003048765.1_00379
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	92319	92540	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	10224	10445	GCA_003048765_1_11_96	GCA_003048765_1_11_96	-	309927	.	PDB:1Z19_B	Integrase	MWWAVRNHLGYLGTSNTHGLYVLRHTVASRLVSLKGFNAHKLMAFMGHTDIKSSLHYVHLNVDDIRDGMGVGV*	common_virus_hmm	common_virus	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0014	.	unmatched_CDS	none	0	0	.
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	92867	93865	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	10772	11770	GCA_003048765_1_11_97	GCA_003048765_1_11_97	-	309927	.	.	hypothetical protein	MFKFGVLVCIPFLMLNFTFAQDISTSNVEKNSTFMLKTLKQMNIPFSGDEYEIENLSKLDDKMLAAVKASLPKQTALYDAIKGDLNKDDIEDAVVVTQETFKDKFLTFSDSCDGSTKDDKWCQIVNKNRRGIVILLSNGDKYEAVVTKRDIFESPNEDGGAYFPPELAVEIKNSELKFFYSYGKYGYWEYVFALDGKDFRLVKYLSNVNNGPVPEYIVQMDFVNHRLDKSANLLYPGNEEHKRYKECIEKYKSLNDAQEDDGYDGVFIRKSYELKTQEILLSEVKKVDYIDGRWLDYLQNLKELGKILKIDFWSEYPGDSEDELARCVADKI*	.	hypothetical_protein	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0015	shell	direct	high	998	0.999	GCA_003048765.1_00380
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	CDS	93890	95878	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	11795	13783	GCA_003048765_1_11_98	GCA_003048765_1_11_98	-	309927	.	PDB:4KFU_C	Genome-packaging-NTPase	MLIVLGYFVYKNFKKFDFDFAQFVVGIFLFFVAFLMFQALTTSGANSGVIGGFIVSALKEVIGAIGTAVAILMIFIISLGLAFRENFIIVLRKAFVDKEPNSYEEKSRGVKEVRARQIPKIESKKPKAEEIREEELIDAQVLNDDEPNLESEPEPEMEPAQESRPATISGVEILNEVAENKKLLDQIERGKVEKPKDFVLPPLKFLNDPPKRSHNINEAEIDQQISNLLDKLRKFKIDGDVVRTYTGPIVTTFEFRPAPHIKVSKILTLQDDLAMALKAQTIRIQAPIPGKDVVGIEVPNQNLETIYLKEILESEVFKNASSPLTMALGKDIVGAPFVTDLKKLPHLLIAGTTGSGKSVGINAMLLSLLYRNSPQTLRLMMIDPKMLEFSIYNDIPHLLTPVITEAKKAITALSNMVAEMERRYKIMSQTRTKNIESYNEKMKSEGGEQFPYIVVIIDELADLMMTSGKDVELYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSRISYRVGQRIDSKVILDQMGAESLLGRGDMLFTPPGSPGVIRLHAPFASEKEIETIVNFLKEQQDVIYDEKFLAEEGSSAGSATGVLGEEELDELYEEAKEIILSEQKTSISYLQRRLKIGYNKAANIIEQMEKMGVLSPVNAKGQREILV*	hallmark_hmm	common_virus	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_CDS_0016	persistent	direct	high	1988	0.999	GCA_003048765.1_00381
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	tRNA	82722	82796	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	627	701	tRNA-Gln	tRNA-Gln	+	309927	.	tRNAscan-SE score: 52.9	Gln	NA	tRNAscan-SE	.	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	tRNA	82824	82898	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	729	803	tRNA-Met	tRNA-Met	+	309927	.	tRNAscan-SE score: 74.7	Met	NA	tRNAscan-SE	.	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote	cenote	tRNA	92209	92290	GCA_003048765.1	PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765.1_PIQU01000001.1	GCA_003048765.1|PIQU01000001.1	GCA_003048765_1_11	GCA_003048765_1_11@C8	10114	10195	tRNA-Undet	tRNA-Undet	+	309927	.	tRNAscan-SE score: 23.3	Undet	NA	tRNAscan-SE	.	C8	13783	82096	95879	GCA_003048765.1|PIQU01000001.1@region_82097_95879@tool_cenote_tRNA_0003	.	.	.	.	.	.