core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1012571	1013002	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	1	432	GCA_003048835_2_1_984	GCA_003048835_2_1_984	+	1998513	.	COG1610	Uncharacterized conserved protein YqeY [Function unknown]. 	MSIREQILADIKEAMKAKDEFKRDTLRTLNAALKQVEVDQRIEMTDEVVLPLLQKEIKKRADSVELYLKGAREDLAKKEQSEIELIKAYLPAQLSDDELKEKIKSIIEKVGKNLGAVMKMAKDEIGASAEAKRISMIAKELLG*	mmseqs_cdd	nonviral_gene	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0001	persistent	direct	high	431	0.998	GCA_003048835.2_01009
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1013421	1014293	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	851	1723	GCA_003048835_2_1_985	GCA_003048835_2_1_985	-	1998513	.	PDB:1Z19_B	Integrase	MCLNDLFDNYISYYELILSPSTLRSDIATYNKHFKNSLGLRDIKEINFIDIQKFCNDLIKQDYKIKTIKNIVAKLKVIFKLGIKLELINKNPCDFIELPKFDNKRYFDYSIAIQKRFIKAICENTDDNSDIFFFLLHGRRKNEVLSLKFSDINFKTRTYTIPFKINKAKRDMIYKMSDELYTRLYKRYIVAKEQKRLNDYVFINPMTDDKFKDLRKSWASLLKRNNLPKIRLHDIRHLIGTYSINYLKIPIEQVSFTLGHTNIITTQKYITANVKKSQETIEILLNSISV*	common_virus_hmm	common_virus	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0002	shell	direct	high	872	0.999	GCA_003048835.2_01012
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1014296	1015636	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	1726	3066	GCA_003048835_2_1_986	GCA_003048835_2_1_986	-	1998513	.	PFAM:PF05840.12	nicking-at-origin-of-replication	MRAKNLYGVSPFDVELCQEKLDSQREYMRSFSFVNSLGQVKNLLDISMSANFSPKYYAEVSNRVNVFSSFAIDNFQVPVFLTITLNGCFRGALSGDYSKFKPIDYKYLPNEVKYKAKNAVALSISDLVAVLNYQWHLFIMRYSRRFKKIDRSYIRCFEPHKKDGVPHIHALFYVPAYTLDFMKRIYTNIFYAPQNLKTNAITSEQEKNGELNGFQTSINNPSGYVMKYIQKTFINLKETQDFDELSAWYVKHKVRRFLSSRTKVPLWVYRKINFISSMQDFYHLNDLTNDHRALIEWNKKDDYIYINLPFNKEEIIYLNGRLEHYIGGRLMNFYDRLKINNKVDEDASDDIKNFGSTLKQRQILKICDELFKTEKRVKPVSKMRDYELLNYYQSLGGDVNVQHLAYVENLMFDRNLDNFTRYHEKHDLNAPDIDSFVDRFLICNEF*	phrogs_hmm	hypothetical_protein	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0003	shell	direct	high	1340	0.999	GCA_003048835.2_01013
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1015868	1017010	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	3298	4440	GCA_003048835_2_1_987	GCA_003048835_2_1_987	-	1998513	.	PDB:5WQ8_J	Type-II-secretion-system-protein	MKSLIKFLILPCLLLNSLFSAEIYTDLLDFARLTSKANNIAIVTDESIHQGEYYFIYQDEVKITISMFRKMLEAKNLYLYKKDNFYYVSSQKLPDYDLRRIDLKNYVVEDVNKILSQFDLNATYATASNSVFFRADDYIFDQVKYAIAKIDKSLEQVTFKLTITETNLKDIKDLGTNLQGLLKPLNHGDLAYYINLITSPYITNSNVIKNDDSAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSYEYKDIGLKINLKPIILSDHIDFDLHLILEDILSQSSSLTPIVSKKELKSSYSLKRGDVLVLSGINKKTIAKQRNGVPILKDIWLLKYLFSVEQDSEINSVLTLTIQIL*	common_virus_hmm	common_virus	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0004	shell	direct	high	1142	0.999	GCA_003048835.2_01014
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1016961	1018085	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	4391	5515	GCA_003048835_2_1_988	GCA_003048835_2_1_988	-	1998513	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MITYLVGNPGSGKTYYAVFMIYRLFLYEPKKTFLTKFVKPKEKPNYSYCYTNINEFKFELSDKFKKFDFDEFYLGLRNLYALYKTGATDNEVNEKAKELNLFGCVFVLDECHNFFKDKKDEILVWWLTYHRHLYQDIYLITQDLTLVNNEYKRIAEKFYRAVDSSRRLFSKKFRYEVYASFRLYKKDQLEIINIPFLQEVFNLYHSGQSSNKKSFVRFYFFLAVLVLVLLLLYFYFIVMSMFEVEKPVDENIPAFEKIHVPASQTPASSSLFYDNKKPKNNNIELPEIYIYDITCLNNNCHFSDDYHLYPLSLISYISSTHTPLYFYFEPKSHELVKYYYVFDKPVFQNLQKNNKGVSDEKFNQISNSSVSAIK*	hallmark_hmm	common_virus	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0005	shell	direct	high	1124	0.999	GCA_003048835.2_01015
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1018088	1018504	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	5518	5934	GCA_003048835_2_1_989	GCA_003048835_2_1_989	-	1998513	.	.	hypothetical protein	MPAIIAMIVNLFGFFKWGKVVDFVLRGITFAKMVIINGLLFASILAYVAAVLVILNFIYTKFNYIVDYINNLSIGNDKIVTTSMMVLKSLGAWNALCDVFAIFSPVLLSFFVIYATKIGIFVFKNARDTLLSFIIAKL*	.	hypothetical_protein	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0006	cloud	direct	high	416	0.998	GCA_003048835.2_01016
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1018516	1019949	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	5946	7379	GCA_003048835_2_1_990	GCA_003048835_2_1_990	-	1998513	.	.	hypothetical protein	MKFLLKLFCLLSLLSSFGFSENTGRGLSGFRNTSLDFYAGSLPSVNASFLSNNFIKIDNDVFQTTSPTYFGFNYSLGISWSGFRADFKNDYLFFYNPSFQKQYTYCQFDKDDNLGCSDEYEKYVGQGDFRKITFSYLERYFLSKFTTCNAGENFNTSLKQCVPACPAGQSWDTENNLCYVDCSDKDLNKFGYPNGTAQGGCVDCSNALSVDQIMRCACSGFGSTYDPGVLLYDHDSPGFVLGSCKSGRQIYFKQRDDKNPDKDKDKKNDNNSTNSSDKDKDNPKPDKDKDNSNPDKKDNNENSNNSSGESGNSSNNNSGGSAGNGSSGGGGTGVETKPNPNYNGNGKEDGKGEEGKGDDAVAQKLDYVDLKKDSDKFNSNFKDALDSVISQAQDFKNSLNDTISKIKDGGLMKFNQSAIPNTCPLTYNVDFSYFRKDITFDICKVIAPASQTLYYFFYVVFFVLFLIVTIKLFLFIF*	.	hypothetical_protein	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0007	cloud	direct	high	1433	0.999	GCA_003048835.2_01017
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1020494	1020712	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	7924	8142	GCA_003048835_2_1_991	GCA_003048835_2_1_991	-	1998513	.	.	hypothetical protein	MKFLASAKSKVLAGVAAVSVLSSNALAAGMTMAADGTVSGTPDIGPFMGIAGAIIGVLAVVFAVKKGFSLLR*	.	hypothetical_protein	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0008	cloud	direct	high	218	0.995	GCA_003048835.2_01020
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1020808	1021287	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	8238	8717	GCA_003048835_2_1_992	GCA_003048835_2_1_992	-	1998513	.	.	hypothetical protein	MALNYSSPVWTKHLFGAMLNGVSKINKLKKVLKMQIVKSDYDLKYILKGGLVRSSASGKFEGNDYSSSVRISSSNIYDVVNEKTGFTDEVEQKVIFKIICPDNNTAGLVASAIKEKFRKGEEIPVEGGFPNDQRIITIANPVEYFLFDTKPANKADKKQ*	.	hypothetical_protein	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0009	shell	direct	moderate	381	0.794	GCA_003048835.2_01021
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1021418	1021669	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	8848	9099	GCA_003048835_2_1_993	GCA_003048835_2_1_993	+	1998513	.	PFAM:PF07141.10	terminase-small-subunit	MTNAEIAKKLKIAEKTIYNWRKNRKELFEVIEDGLNLKENKESIYVNDTYKELIDLLEKLSQQEIQYYISDIKTRILKKEIDK*	phrogs_hmm	hypothetical_protein	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0010	shell	direct	high	251	0.996	GCA_003048835.2_01022
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1021666	1022094	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	9096	9524	GCA_003048835_2_1_994	GCA_003048835_2_1_994	+	1998513	.	.	hypothetical protein	MRKLLILIIAIINLNAINIRPVQEQKYCKENKDRSKTEQEKIIYEIRCKETLSEKFMKEINNKVKEVKEELNKKGLDTSEKFEISLNEKEAVKSIIEAEIQKIYLQYKERYKNSPEVMEINFWKIQIDEQKDQKKKLEIIMK*	.	hypothetical_protein	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0011	cloud	direct	high	428	0.998	GCA_003048835.2_01023
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1022096	1022374	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	9526	9804	GCA_003048835_2_1_995	GCA_003048835_2_1_995	-	1998513	.	COG3636	DNA-binding prophage protein  [Mobilome: prophages, transposons]. 	MKEEFTKFNLEDYLTTDELRKEYLNQVLADGDIEEFKRALFYIAKSKGIENVAKKANLNRESFYKMFKENSKPRFESIFKVVNALDIKLVYA*	mmseqs_cdd	nonviral_gene	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0012	shell	direct	high	278	0.996	GCA_003048835.2_01024
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1022371	1022664	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	9801	10094	GCA_003048835_2_1_996	GCA_003048835_2_1_996	-	1998513	.	COG3657	Putative component of the toxin-antitoxin plasmid stabilization module [Defense mechanisms]. 	MKVLKSSTFDKWLHKLNNPIVKVSILRRLEQIETKDHLGDYKFIDTDLYELRFFNRGGLRIFFTFNGNEIVILLNAGDKDSQSDDIKKAKEILKDYK*	mmseqs_cdd	nonviral_gene	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0013	shell	direct	high	293	0.997	GCA_003048835.2_01025
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1022794	1023015	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	10224	10445	GCA_003048835_2_1_997	GCA_003048835_2_1_997	-	1998513	.	PDB:1Z19_B	Integrase	MWWAVRNHLGYLGTSNTHGLYVLRHTVASRLVSLKGFNAHKLMAFMGHTDIKSSLHYVHLNVDDIRDGMGVGV*	common_virus_hmm	common_virus	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0014	.	unmatched_CDS	none	0	0	.
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1023342	1024340	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	10772	11770	GCA_003048835_2_1_998	GCA_003048835_2_1_998	-	1998513	.	.	hypothetical protein	MFKFGVLVCIPFLMLNFTFAQDISTSNVEKNSTFMLKTLKQMNIPFSGDEYEIENLSKLDDKMLAAVKASLPKQTALYDAIKGDLNKDDIEDAVVVTQETFKDKFLTFSDSCDGSTKDDKWCQIVNKNRRGIVILLSNGDKYEAVVTKRDIFESPNEDGGAYFPPELAVEIKNSELKFFYSYGKYGYWEYVFALDGKDFRLVKYLSNVNNGPVPEYIVQMDFVNHRLDKSANLLYPGNEEHKRYKECIEKYKSLNDAQEDDGYDGVFIRKSYELKTQEILLSEVKKVDYIDGRWLDYLQNLKELGKILKIDFWSEYPGDSEDELARCVADKI*	.	hypothetical_protein	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0015	shell	direct	high	998	0.999	GCA_003048835.2_01026
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	CDS	1024365	1026353	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	11795	13783	GCA_003048835_2_1_999	GCA_003048835_2_1_999	-	1998513	.	PDB:4KFU_C	Genome-packaging-NTPase	MLIVLGYFVYKNFKKFDFDFAQFVVGIFLFFVAFLMFQALTTSGANSGVIGGFIVSALKEVIGAIGTAVAILMIFIISLGLAFRENFIIVLRKAFVDKEPNSYEEKSRGVKEVRARQIPKIESKKPKAEEIREEELIDAQVLNDDEPNLESEPEPEMEPAQESRPATISGVEILNEVAENKKLLDQIERGKVEKPKDFVLPPLKFLNDPPKRSHNINEAEIDQQISNLLDKLRKFKIDGDVVRTYTGPIVTTFEFRPAPHIKVSKILTLQDDLAMALKAQTIRIQAPIPGKDVVGIEVPNQNLETIYLKEILESEVFKNASSPLTMALGKDIVGAPFVTDLKKLPHLLIAGTTGSGKSVGINAMLLSLLYRNSPQTLRLMMIDPKMLEFSIYNDIPHLLTPVITEAKKAITALSNMVAEMERRYKIMSQTRTKNIESYNEKMKSEGGEQFPYIVVIIDELADLMMTSGKDVELYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSRISYRVGQRIDSKVILDQMGAESLLGRGDMLFTPPGSPGVIRLHAPFASEKEIETIVNFLKEQQDVIYDEKFLAEEGSSAGSATGVLGEEELDELYEEAKEIILSEQKTSISYLQRRLKIGYNKAANIIEQMEKMGVLSPVNAKGQREILV*	hallmark_hmm	common_virus	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_CDS_0016	persistent	direct	high	1988	0.999	GCA_003048835.2_01027
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	tRNA	1013197	1013271	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	627	701	tRNA-Gln	tRNA-Gln	+	1998513	.	tRNAscan-SE score: 52.9	Gln	NA	tRNAscan-SE	.	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	tRNA	1013299	1013373	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	729	803	tRNA-Met	tRNA-Met	+	1998513	.	tRNAscan-SE score: 74.7	Met	NA	tRNAscan-SE	.	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote	cenote	tRNA	1022684	1022765	GCA_003048835.2	CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835.2_CP060705.1	GCA_003048835.2|CP060705.1	GCA_003048835_2_1	GCA_003048835_2_1@C70	10114	10195	tRNA-Undet	tRNA-Undet	+	1998513	.	tRNAscan-SE score: 23.3	Undet	NA	tRNAscan-SE	.	C70	13783	1012571	1026354	GCA_003048835.2|CP060705.1@region_1012572_1026354@tool_cenote_tRNA_0003	.	.	.	.	.	.