core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2535178	2535741	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	1	564	GCA_003312465_1_1_2382	GCA_003312465_1_1_2382	+	2970937	.	PF07799.12	Protein of unknown function (DUF1643)	MQTISLPVLEAGEYAGGIWYYEPHTYQSYRYVLGRVGKHPLVCIGINPSTAQPGALDPTLKSVERLAAANGFDSWIMFNVYPQRATDPNDMDKTPDRALCDENLRWLQAVLAQTEPTMWAAWGTLIEKRDYLPGLMREMVALTREREIPWVTFGKRSKKGHPHHPLYLRKDSTPEPFDVENYLDTCF*	hhsuite_tools	nonviral_gene	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0001	persistent	direct	high	563	0.998	GCA_003312465.1_02419
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2535770	2536306	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	593	1129	GCA_003312465_1_1_2383	GCA_003312465_1_1_2383	+	2970937	.	cd03395	PAP2_like_4	MTAEQYKPIYHWFSAHPAVKRLVVFLDRWLPLVPFVCYPVLLCLLNIRLSRLFLTQKQAALDFMVLIARSVFVPGLVFWGGTLLRSRLHFPRPYEQPGFTPLVAKESRGHSMPSRHALSAAVLAAVWLYFYPAAGCVMVGIALLICCLRVLTGVHHVRDVVCGFALGFALGCAGMWLL*	hhsuite_tools	hypothetical_protein	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0002	persistent	direct	high	536	0.998	GCA_003312465.1_02420
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2536736	2538088	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	1559	2911	GCA_003312465_1_1_2384	GCA_003312465_1_1_2384	-	2970937	.	.	hypothetical protein	MASKKKEELLQPEVQTQAQPAAQSTYSAEGLNSRADVEKAMANASYRPGQQVTDAADALKQWQQNRPADYQSSYQDKINSLLGQLLERENFQYSYTRDPLYRQYEQLYTQNAHNASADAAAQAAALTGGYGSSYATSAAQQAYQQQIGGLASAIPTLYNLALDTYQSGGEELVNRLDQLNGQEQNAQTLYDRQLQDYYTQLQQKGEAYNDAYAKDYGQYQEHLNRLDTLHGYYTAQEQAEISQRQQTFNNIMTVLGVIGDVVQLAITGTTGLGTLAGSLMNTGYNIYAGNRAYEAERADTQWSQQMQEKQRQDALTQQQYDNTASERAYQDALKQQAFNNNVTTQKLNIAKGEWALKQANAQQKAAQAASKAAAAGTRSGSGKATGSSGSASGGSRSASGGSRSAVSAGVPYTAALLRSQGKSNVAITSALRQEGYTPAQIAKIIQEMNK*	.	hypothetical_protein	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0003	persistent	direct	high	1352	0.999	GCA_003312465.1_02423
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2538107	2538292	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	2930	3115	GCA_003312465_1_1_2385	GCA_003312465_1_1_2385	-	2970937	.	.	hypothetical protein	MASMNGLSKLGLPKFSDNMDPEDARALRSYLYQMQEQLQYVLTNLDTENMSDTLRSKLQGL*	.	hypothetical_protein	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0004	persistent	direct	high	185	0.995	GCA_003312465.1_02424
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2538280	2540160	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	3103	4983	GCA_003312465_1_1_2386	GCA_003312465_1_1_2386	-	2970937	.	PFAM:PF11134.7	internal-virion-protein	MVLADRIRLANTRQLLRAFGGLNETYGCSEAEYSAGVNFSTRDFPALSTRTPRRKLRALTGLNGMYHLNGLLTVCGRDITYTPDDAAAPAVTKPDAVTDGRKALVGIGTKILIFPDKVAFDTADGSVTALGALWTAAGKSVTFAPCDAAGKTYQVEAFGREEPAEPADGQLFLKVEDADHPWRYDSTLEMYSKNSGSWAAIPLEYCRITAAGLGKLFRQWDTVTVQGAAAEAAGQSPELNGDQIVYDVGEDWLLVRCTPQGEYFYGTLVQNAAAAQWQSMDGKQHRSVEAAQTVSMERRVPELDFVTECDNRVWGCNSRENVIYGCKLGDPTNWFSYRGIAADSYAVTVGSDGAFTGAASCMGYALFFKENTLHKLYGSKPSDFQLSSLRCRGVAKNAARSLCVLNETLYYLSPDGVMAWDGSLPTKVSGALDAAKLSNVQSAVGGALDGRYYLHISREDARLLVYDTEKGLWSEEDVCSCDMTSTGGQLYLWDGQALWAADPTREPDWQTTDGVETDIPFELVTGDVGLDSTEQRYLSRLTLRLDAECTSTVEVAVSYDGGAWETVASLAAQGSRRSCDLPFVPRRCGSLRLRLRGKGQITLRGLVRTIAPAKGKLWEEDASWQA*	phrogs_hmm	hypothetical_protein	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0005	persistent	direct	high	1880	0.999	GCA_003312465.1_02425
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2540173	2540556	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	4996	5379	GCA_003312465_1_1_2387	GCA_003312465_1_1_2387	-	2970937	.	.	hypothetical protein	MTIGEALERAEQLRPNCRIETETRLQWLREADALLRTKLFDRAAAGAFDAVGADRPWEQPVQDDQTLLAPPPFDALYPHLLCAQMDAALGETDRYAGEQAQYNALYAELAVWLRQNYPPRSRAQWRW*	.	hypothetical_protein	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0006	persistent	direct	high	383	0.997	GCA_003312465.1_02426
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2540631	2540843	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	5454	5666	GCA_003312465_1_1_2388	GCA_003312465_1_1_2388	-	2970937	.	.	hypothetical protein	MAEKNVRIRLFKDNSRYKGDLFVSVNGVNYKIRRGVEVEVPPAVAEVLEHSQRQDELTAARIAAAENAAQ*	.	hypothetical_protein	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0007	persistent	direct	high	212	0.995	GCA_003312465.1_02427
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2540854	2541852	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	5677	6675	GCA_003312465_1_1_2389	GCA_003312465_1_1_2389	-	2970937	.	CDD:TIGR04387	Major-Capsid-protein	MMNFNIQLFADAQTNTTGTMSVEMKTFYEKRLIDQAEPRLVHDQFADYYPVPQNGGKTIEFRKYDSLPKASTPLTEGVTPNGQALNVTSITSDLHQYGGWTPLTDVLQMTAIDNNVVQATRVLASQAGRTMDSITRDVLAGGTNVIYAPKLGADGAETAVTSRKALDKSCTLTPKLFFQAAAQLGAMNADPIGDSYVAIIHPYAAYDLKTCKEFMEVHKYADPDTMFRGEIGKLGNIRFIETSEAKIWKDDTCPAGLAVFGTLVLGAHAYGVTELEGGGLEHIVKQLGYGDDPLNQRASVGWKGMRAAERLVEQYMVRIESVSSYSATAAAN*	hallmark_hmm	common_virus	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0008	persistent	direct	high	996	0.997	GCA_003312465.1_02428
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2541877	2542803	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	6700	7626	GCA_003312465_1_1_2390	GCA_003312465_1_1_2390	-	2970937	.	cd16332	ribosomal-processing cysteine protease Prp and similar proteins. This model represents a family of cysteine proteases that include members found to cleave the N-terminus extension of ribosomal subunit L27 in eubacteria. Proteins in this family are distinguished by a pair of invariant histidine and cysteine residues with conserved spacing that form the classic catalytic dyad of a cysteine protease. Dependence of Staphylococcus aureus on L27 cleavage by Prp makes the enzyme a target for antibiotic development.	MIKVCYSELDGPKGLSLRLEAAGHAGYAPAGQDIVCAGASTLMQALVYLLAGEENARSDAWDEPEGPRLAVAAQAPVAPWVQGAFELAKAGFTLLAERYPDNLRFADVSRSGQQSMMDLQLFAEGEAAPALSPEQTRQAVAAGTLKPEATAAQPEAPQQTPAEPEPQPEKPAQPERPALPSLPLPVQNTVRGLHARWAAEEAAMRRSQPSFDLKAELKNPEMRRLMQLPGMRVQDAYRLAHYEDAMRTTAQTVEQGVVERVQQRAARPLENGLRPGAAASVRPDVAAMTRAQREALERRVLHGAQIEL*	mmseqs_cdd	nonviral_gene	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0009	persistent	direct	high	926	0.999	GCA_003312465.1_02429
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2542805	2544589	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	7628	9412	GCA_003312465_1_1_2391	GCA_003312465_1_1_2391	-	2970937	.	PFAM:PF16510.4	Portal-protein	MEDTRAESLPIGAAEAAAALQTLQRYKAGKAALDKRLIDNELWFRMGHWKNYRDPLMPGKAQPSSGWLFNSIANKHADAMDNYPEPMVLPRAADDQATAQALSSVLPVVLEQADYEQVYSDVWWRKLKQGTGVTGIFWDPAARGGLGDIAVRSVNLLMLYWEPGVQDIQDSPDLFHLSLEDTARLTAQYPQLAGHAAGVVDVPRYIHEDGQTTANKSVVVDWYYKRPDENGKLRLHYCKLCNGVVLYASQNDPALAARGLYDHGKYPFVFDPLFVEEDSPAGFGYIDVMKDCQNAIDKMNHAMDENVLLASRQRYVLSDTAGVNEEELADLSRDIVHVVGRLNEDSFRPLQTAGLQGNSLSYRNSRIEELKEISGNRDLTQGGTTGGVTAASAIAALQEAGSKLSRDMLKSAYRAFARQCYLIIELMRQFYDEQRVFRITGQRGESEFVPFSAQGLRAKPMPAVGGVELGSREPVFDIVVSAAKKSTFSRLSQNETAKECYKLGFFDPANADAALAALEMMDFEGVEKVRARVRQNGTLAQQLVQLQGQMARLSAALAQQPGGTQAAQDTAGLTAQLPVAAAARAMNWNGKEVK*	hallmark_hmm	common_virus	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0010	persistent	direct	high	1784	0.999	GCA_003312465.1_02430
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2544616	2546061	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	9439	10884	GCA_003312465_1_1_2392	GCA_003312465_1_1_2392	-	2970937	.	PDB:5OEA_B	Large-Terminase	MNRTERAVIVWKPQPRQLEFMRRPEPEALYGGAAGGGKSDALLIEALRQVHIPHYRALILRKTYPQLSDLVDKSQMYYRRAFPEAQYNATSHVWVFPSGAKIWFGSMQYTKDRTNYQGKAYDFIGFDELTHFEWDEYSYMMSRNRPTGPGTRVYMRATTNPGGIGHGWVKARFITPAPPGTPIVETVTVRLPDGTDQQMERARVFIPSSVFDNPALLANDPGYLASLASLPEAEKQALLYGSWDSFSGQVFTEWRNDPAHYQDQRWTHVIAPFAIPKHWPIWRGYDFGFSKPFSVGWYAVDEEGRLYRIKELYGCTGRPNEGLRIDPVEQAKRIREAEQNDPLLRGRVIHGVADPAIFDESRGESIAAMMERSPHFLRWQPGDHTRLAGKMQFHYRLRFAPDGRPMLQVFSSCKHFIRTLPNLVYDESNVEDIDTRQEDHIYDECRYVLMEHPISPPETSAAPPRPDDPLELHRQARFYRI*	hallmark_hmm	common_virus	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0011	persistent	direct	high	1445	0.999	GCA_003312465.1_02431
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2546058	2546345	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	10881	11168	GCA_003312465_1_1_2393	GCA_003312465_1_1_2393	-	2970937	.	.	hypothetical protein	MGQTKPAAGLKSLNRAADTLSTLLAQEVKELNERQKAARRENTPDPGMMKGLKEATAVLKDLAGVVKTLNDQGTELEGTECGVVLLPPVEQEEKE*	.	hypothetical_protein	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0012	persistent	direct	high	287	0.997	GCA_003312465.1_02432
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	CDS	2547057	2548109	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	11880	12932	GCA_003312465_1_1_2394	GCA_003312465_1_1_2394	+	2970937	.	cd01539	periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	MKMISRRDFLKASAVVGATAAMTACGGSSSTSTAASSVASSTAASAAATNGSANIGVCIYQFADNFMTLYRADLEGYLKDMGYSVTIMDGKNDQNTQTEQINTFLQQGVDVLVINPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGELILETETQGDINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDAGKEVECLYEYLDNWDQTTAQQDVANALSQYGDKIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDALVEAVQNVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDVEKYYWVDYVKVTKDNASQYLKED*	mmseqs_cdd	nonviral_gene	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_CDS_0013	persistent	direct	high	1052	0.999	GCA_003312465.1_02433
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	tRNA	2536473	2536546	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	1296	1369	tRNA-Arg	tRNA-Arg	+	2970937	.	tRNAscan-SE score: 79.7	Arg	NA	tRNAscan-SE	.	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote	cenote	tRNA	2536555	2536631	GCA_003312465.1	CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465.1_CP030777.1	GCA_003312465.1|CP030777.1	GCA_003312465_1_1	GCA_003312465_1_1@C184	1378	1454	tRNA-His	tRNA-His	+	2970937	.	tRNAscan-SE score: 78.3	His	NA	tRNAscan-SE	.	C184	12932	2535178	2548110	GCA_003312465.1|CP030777.1@region_2535179_2548110@tool_cenote_tRNA_0002	.	.	.	.	.	.