core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	105376	106428	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	1	1053	GCA_003324185_1_50_82	GCA_003324185_1_50_82	-	159723	.	cd01539	periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	MKMISRRDFLKASAVVGATAAMTACGGSSSTSTAASSVASSTAASAAATNGSANIGVCIYQFADNFMTLYRADLEGYLKDMGYSVTIMDGKNDQNTQTEQINTFLQQGVDVLVINPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGELILETETQGDINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDANKEVECLYEYLDNWDQTTAQQDVANALSQYGDKIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDALVEAVQNVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDVEKYYWVDYVKVTKDNASQYLKED*	mmseqs_cdd	nonviral_gene	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0001	persistent	direct	high	1052	0.999	GCA_003324185.1_02273
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	107140	107427	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	1765	2052	GCA_003324185_1_50_83	GCA_003324185_1_50_83	+	159723	.	.	hypothetical protein	MGQTKPAAGLKSLNRAADTLSTLLAQEVKELNERQKAARRENTPDPGMMKGLKEATAVLKDLAGVVKTLNDQGTELEGTECGVVLLPPVEQEEKE*	.	hypothetical_protein	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0002	persistent	direct	high	287	0.997	GCA_003324185.1_02274
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	107424	108869	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	2049	3494	GCA_003324185_1_50_84	GCA_003324185_1_50_84	+	159723	.	PDB:5OEA_B	Large-Terminase	MNRTERAVIVWKPQPRQLEFMRRPEPEALYGGAAGGGKSDALLIEALRQVHIPHYRALILRKTYPQLSDLVDKSQMYYRRAFPEAQYNATSHVWVFPSGAKIWFGSMQYTKDRTNYQGKAYDFIGFDELTHFEWDEYSYMMSRNRPTGPGTRVYMRATTNPGGIGHGWVKARFITPAPPGTPIVETVTVRLPDGTDQQMERARVFIPSSVFDNPALLANDPGYLASLASLPEAEKQALLYGSWDSFSGQVFTEWRNDPAHYQDQRWTHVIAPFAIPKHWPIWRGYDFGFSKPFSVGWYAVDEEGRLYRIKELYGCTGRPNEGLRIDPVEQAKRIREAEQNDPLLRGRVIHGVADPAIFDESRGESIAAMMERSPHFLRWQPGDHTRLAGKMQFHYRLRFAPDGRPMLQVFSSCKHFIRTLPNLVYDESNVEDIDTRQEDHIYDECRYVLMEHPISPPEASAAPPRPDDPLELHRQARFYRI*	hallmark_hmm	common_virus	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0003	persistent	direct	high	1445	0.999	GCA_003324185.1_02275
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	108895	110679	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	3520	5304	GCA_003324185_1_50_85	GCA_003324185_1_50_85	+	159723	.	PFAM:PF16510.4	Portal-protein	MEDTRAEALPIGAAEAAAALQTLQRYKAGKAALDKRLIDNELWFRMGHWKNYRDPLMPGKAQPSSGWLFNSIANKHADAMDNYPEPMVLPRAADDQATAQALSSVLPVVLEQADYEQVYSDVWWRKLKQGTGVTGIFWDPAARGGLGDIAVRSVNLLMLYWEPGVQDIQDSPDLFHLSLEDTARLTAQYPQLAGHAAGVVDVPRYIHEDGQATANKSVVVDWYYKRPDENGKLRLHYCKLCNGVVLYASQNDPALAARGLYDHGKYPFVFDPLFVEEDSPAGFGYIDVMKDCQNAIDKMNHAMDENVLLASRQRYVLSDTAGVNEEELADLSRDIVHVVGRLNEDSFRPLQTAGLQGNSLSYRNSRIEELKEISGNRDLTQGGTTGGVTAASAIAALQEAGSKLSRDMLKSAYRAFARQCYLIIELMRQFYDEQRVFRITGQRGESEFVPFSAQGLRAKPVPAVGGVELGSREPVFDIVVSAAKKSTFSRLSQNETAKECYKLGFFDPANADAALAALEMMDFEGVEKVRARVRQNGTLAQQLLQLQGQMARLSAALAQQPGGTQTAQDTAGLTAQLPVAAAARAMNWNGKEVK*	hallmark_hmm	common_virus	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0004	persistent	direct	high	1784	0.999	GCA_003324185.1_02276
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	110681	111607	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	5306	6232	GCA_003324185_1_50_86	GCA_003324185_1_50_86	+	159723	.	cd16332	ribosomal-processing cysteine protease Prp and similar proteins. This model represents a family of cysteine proteases that include members found to cleave the N-terminus extension of ribosomal subunit L27 in eubacteria. Proteins in this family are distinguished by a pair of invariant histidine and cysteine residues with conserved spacing that form the classic catalytic dyad of a cysteine protease. Dependence of Staphylococcus aureus on L27 cleavage by Prp makes the enzyme a target for antibiotic development.	MIKVCYSELDGPKGLSLRLEAAGHAGYAPAGQDIVCAGASTLMQALVYLLAGEESARSDAWDEPEGPRLAVAAQAPVAPWVQGAFELAKAGFTLLAERYPDNLRFADVSRSGQQSMMDLQLFAEGEAAPALSPEQTRQAVAAGTLKPEAPAAQPEVPPQTPAEPEPQPETPAQPERPMLPPLPLPVQNTVRSLHARWAAEEAAMRRSQPGFDLKAELKNPEMRRLMQLPGMRVQDAYRLAHYEDALRTTAQTVEQGVVERVQQRAARPLENGLRPGAAASVRPDVAAMTRAQREALERRVLHGAQIEL*	mmseqs_cdd	nonviral_gene	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0005	persistent	direct	high	926	0.999	GCA_003324185.1_02277
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	111632	112630	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	6257	7255	GCA_003324185_1_50_87	GCA_003324185_1_50_87	+	159723	.	CDD:TIGR04387	Major-Capsid-protein	MMNFNIQLFADAQTNTTGTMSVEMKTFYEKRLIDQAEPRLVHDQFADYYPVPQNGGKTIEFRKYDSLPKASTPLTEGVTPNGQALNVTSITSDLHQYGGWTPLTDVLQMTAIDNNVVQATRVLASQAGRTMDSITRDVLAGGTNVIYAPKLGADGAETAVTSRKALDKSCTLTPKLFFQAAAQLGAMNADPIGDSYVAIIHPYAAYDLKTCKEFMEVHKYADPDTMFRGEIGKLGNIRFIETSEAKIWKDDTCPTGLAVFGTLVLGAHAYGVTELEGGGLEHIVKQLGYGDDPLNQRASVGWKGMRAAERLVEQYMVRIESVSSYSATAAAN*	hallmark_hmm	common_virus	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0006	persistent	direct	high	995	0.996	GCA_003324185.1_02278
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	112641	112853	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	7266	7478	GCA_003324185_1_50_88	GCA_003324185_1_50_88	+	159723	.	.	hypothetical protein	MAEKNVRIRLFKDNSRYKGDLFVSVNGVNYKIRRGVEVEVPPAVAEVLEHSQRQDELTAARIAAAENAAQ*	.	hypothetical_protein	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0007	persistent	direct	high	212	0.995	GCA_003324185.1_02279
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	112937	113302	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	7562	7927	GCA_003324185_1_50_89	GCA_003324185_1_50_89	+	159723	.	.	hypothetical protein	MERAEQLRPNCRIETETRLQWLREADALLRTKLFDRTAAGAFDAVGADRPWEQPVQDDQTLLAPPPFDALYPHLLCAQMDAALGETDRYAGEQAQYNALYAELAVWLRQNYPPRSRAQWRW*	.	hypothetical_protein	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0008	persistent	direct	high	366	1.0	GCA_003324185.1_02280
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	113315	115195	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	7940	9820	GCA_003324185_1_50_90	GCA_003324185_1_50_90	+	159723	.	PFAM:PF11134.7	internal-virion-protein	MVLADRIRLANTRQLLRAFGGLNETYGCSEAEYSAGVNFSTRDFPALSTRTPRRRLRALTGLNGMYHLNGLLTVCGRDITYTPDDAAAPAVTKLDAVTDGRKALVGIGTKILIFPDKLAFDTADGSVAALGALWTAAGKSVTFAPCDAAGKTYQVEAFGREEPAEPADGQLFLRVEDADHPWRYDSTLEMYSKNSGSWTAIPLEYCRITAAGLGKLFRQWDTVTVQGAAAEAAGQSPELNGDQIVYDVGEDWLRVRCTPQGEYFYGTLVQNAAAAQWQSMDGKQHRSVEAAQTVSMERRVPELDFVTECDNRVWGCNSRENVIYGCKLGDPTNWFSYRGIAADSYAVTVGSDGAFTGAASCMGYALFFKENTLHKLYGSKPSDFQLSSLRCRGVAKNAARSLCVLNETLYYLSPDGVMAWDGSLPTKVSGALDAAKLANVQSAVGGALDGRYYLHISRESARLLVYDTEKGLWSEEDVCSCDMTSTGGQLYLWDGQALWAADPTREPDWQSTDGVETDIPFELVTGDVGLDGTEQRYLSRLTLRLDAECTSTVEVAVSYDGGAWETVAALAAQGRRRSFDLPFVPRRCGSLRLRLRGKGQITLRSLVRTIAPAKGKLWEEDASWQA*	phrogs_hmm	hypothetical_protein	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0009	persistent	direct	high	1880	0.999	GCA_003324185.1_02281
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	115183	115368	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	9808	9993	GCA_003324185_1_50_91	GCA_003324185_1_50_91	+	159723	.	.	hypothetical protein	MASMNGLSKLGLPKFSDNMDPEDARALRSYLYQMQEQLQYVLTNLDTENMSDTLRSKLQGL*	.	hypothetical_protein	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0010	persistent	direct	high	185	0.995	GCA_003324185.1_02282
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	115387	116727	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	10012	11352	GCA_003324185_1_50_92	GCA_003324185_1_50_92	+	159723	.	.	hypothetical protein	MASKKKEELLQPEMQTQAQPAAQSTYSAEGLNSRADVEKAMANVSYRPGQQVTDAADALKQWQQNRPADYQSSYQDKINSLLGQLLERENFQYSYTRDPLYRQYEQLYTQNAHNASADAAAQAAALTGGYGSSYATSAAQQAYQQQIGGLASAIPTLYNLALDTYQSGGEELVNRLDQLNGQEQNAQTLYDRQLQDYYTQLQQKGEAYNDAYAKDYGQYQEHLNRLDTLHGYYTAQEQAEISQRQQTFNNIMTVLGVIGDVVQLAITGTTGLGTLAGSLLNTGYNIYSGNRAYEAERADTQWSQQMQEKQRQDALTQQQYDNTASERAYQDALKQQAFNNNVTTQKLNIAKGEWALKQANAQQKAAQAASKAAAARTKSGSSSSGKATGSSGSASGGSRSAVSAGVPYTAALLRSQGKNDVAITSALRQEGYTPAQIAKILQEMNK*	.	hypothetical_protein	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0011	persistent	direct	high	1340	0.999	GCA_003324185.1_02283
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	117159	117695	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	11784	12320	GCA_003324185_1_50_93	GCA_003324185_1_50_93	-	159723	.	cd03384	PAP2_wunen	MTAEQYKPIYHWFSAHPTVKRLVVFLDRWLPLVPFVCYPVLLCLLNVRLSRLFLTQKQAALDFMVLIARSVFVPGLVFWGGTLLRSRLHFPRPYEQPGFTPLVAKESRGHSMPSRHALSAAVLAAVWLYFYPAAGCVMVGVALLICCLRVLTGVHHVRDVVCGFALGFALGCAGMWLL*	hhsuite_tools	hypothetical_protein	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0012	persistent	direct	high	536	0.998	GCA_003324185.1_02286
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	CDS	117724	118287	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	12349	12912	GCA_003324185_1_50_94	GCA_003324185_1_50_94	-	159723	.	PF07799.12	Protein of unknown function (DUF1643)	MQTISLPVLEAGEYAGGIWYYEPHTYQSYRYVLGRVGKHPLVCIGINPSTAQPGALDPTLKSVERLAAANGFDSWIMFNVYPQRATDPNDMDKVPDRALCDENLRWLQAVLAQTEPTMWAAWGTLIEKRDYLPGLMREMVALTREREIPWVTFGKRSKKGHPHHPLYLRKDSTPEPFDVENYLDTCF*	hhsuite_tools	nonviral_gene	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_CDS_0013	persistent	direct	high	563	0.998	GCA_003324185.1_02287
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	tRNA	116919	116992	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	11544	11617	tRNA-Arg	tRNA-Arg	-	159723	.	tRNAscan-SE score: 79.7	Arg	NA	tRNAscan-SE	.	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote	cenote	tRNA	116834	116910	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185_1_50	GCA_003324185_1_50@C10	11459	11535	tRNA-His	tRNA-His	-	159723	.	tRNAscan-SE score: 78.3	His	NA	tRNAscan-SE	.	C10	12912	105376	118288	GCA_003324185.1|PXUP01000005.1@region_105377_118288@tool_cenote_tRNA_0001	.	.	.	.	.	.