core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	103681	105222	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_81	1542	-1	0.571	11	AGGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	81	1	1	1542	MSEYRLVMKGVVKTFPGVKALDHAQLELRPGKVMALMGENGAGKSTLMKCMFGIYKMDEGEIEYEGQKVTIPTPLDALDRGIAMVHQELQPIPARTVAENIWLGRYPTKKYGIVTVVDHAKMYKDTDELLKKLKLDIDPHAKLGSLSIAQMQMVEIAKAVSANCKVLILDEPTSSLTANEVESLFRIMRELKEQGVALVYISHKMDEIKVIADEVTIMRDGQYIGKWDVASMTKEEIIAKMVGRELSNLFPPLENVPSDEVMMKVEDFTSIHPRSFRHCSFELKKGEILGVAGLVGAQRTELMEGIFGLRAHTSGKVWIKGEEVNIKQPRDAIRKSVALLTEDRRATGILGVLSVADNISIASLDALRKGPIMLDNQKILDLVATNKEKMAIKVPSPKTQIKSLSGGNQQKVLIARWLANNPDVLILDEPTRGIDVGAKYEIYCIIADLAKQGKSIIMISSEMSEIIGMSNRVMVMCDGRITGFINGKDATQENIMALATQFETAPDAAAANQ	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0001	persistent	direct	high	1542	1.0	GCA_003324185.1_02272
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	105377	106429	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_82	1053	-1	0.571	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	82	2	1697	2749	MKMISRRDFLKASAVVGATAAMTACGGSSSTSTAASSVASSTAASAAATNGSANIGVCIYQFADNFMTLYRADLEGYLKDMGYSVTIMDGKNDQNTQTEQINTFLQQGVDVLVINPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGELILETETQGDINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDANKEVECLYEYLDNWDQTTAQQDVANALSQYGDKIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDALVEAVQNVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDVEKYYWVDYVKVTKDNASQYLKED	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0002	persistent	direct	high	1053	1.0	GCA_003324185.1_02273
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	107141	107428	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_83	288	1	0.656	11	AGGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	83	3	3461	3748	MGQTKPAAGLKSLNRAADTLSTLLAQEVKELNERQKAARRENTPDPGMMKGLKEATAVLKDLAGVVKTLNDQGTELEGTECGVVLLPPVEQEEKE	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0003	persistent	direct	high	288	1.0	GCA_003324185.1_02274
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	107425	108870	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_84	1446	1	0.641	11	AGGAGG	GENOMAD.016323.VV	8.64e-82	283	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	84	4	3745	5190	MNRTERAVIVWKPQPRQLEFMRRPEPEALYGGAAGGGKSDALLIEALRQVHIPHYRALILRKTYPQLSDLVDKSQMYYRRAFPEAQYNATSHVWVFPSGAKIWFGSMQYTKDRTNYQGKAYDFIGFDELTHFEWDEYSYMMSRNRPTGPGTRVYMRATTNPGGIGHGWVKARFITPAPPGTPIVETVTVRLPDGTDQQMERARVFIPSSVFDNPALLANDPGYLASLASLPEAEKQALLYGSWDSFSGQVFTEWRNDPAHYQDQRWTHVIAPFAIPKHWPIWRGYDFGFSKPFSVGWYAVDEEGRLYRIKELYGCTGRPNEGLRIDPVEQAKRIREAEQNDPLLRGRVIHGVADPAIFDESRGESIAAMMERSPHFLRWQPGDHTRLAGKMQFHYRLRFAPDGRPMLQVFSSCKHFIRTLPNLVYDESNVEDIDTRQEDHIYDECRYVLMEHPISPPEASAAPPRPDDPLELHRQARFYRI	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0004	persistent	direct	high	1446	1.0	GCA_003324185.1_02275
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	108896	110680	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_85	1785	1	0.649	11	AGGA	GENOMAD.016323.VV	2.159e-86	301	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	85	5	5216	7000	MEDTRAEALPIGAAEAAAALQTLQRYKAGKAALDKRLIDNELWFRMGHWKNYRDPLMPGKAQPSSGWLFNSIANKHADAMDNYPEPMVLPRAADDQATAQALSSVLPVVLEQADYEQVYSDVWWRKLKQGTGVTGIFWDPAARGGLGDIAVRSVNLLMLYWEPGVQDIQDSPDLFHLSLEDTARLTAQYPQLAGHAAGVVDVPRYIHEDGQATANKSVVVDWYYKRPDENGKLRLHYCKLCNGVVLYASQNDPALAARGLYDHGKYPFVFDPLFVEEDSPAGFGYIDVMKDCQNAIDKMNHAMDENVLLASRQRYVLSDTAGVNEEELADLSRDIVHVVGRLNEDSFRPLQTAGLQGNSLSYRNSRIEELKEISGNRDLTQGGTTGGVTAASAIAALQEAGSKLSRDMLKSAYRAFARQCYLIIELMRQFYDEQRVFRITGQRGESEFVPFSAQGLRAKPVPAVGGVELGSREPVFDIVVSAAKKSTFSRLSQNETAKECYKLGFFDPANADAALAALEMMDFEGVEKVRARVRQNGTLAQQLLQLQGQMARLSAALAQQPGGTQTAQDTAGLTAQLPVAAAARAMNWNGKEVK	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0005	persistent	direct	high	1785	1.0	GCA_003324185.1_02276
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	110682	111608	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_86	927	1	0.697	11	AGGAGG	GENOMAD.114542.VC	1.294e-158	497	0	0	0	1246	Caudoviricetes	NA	NA	PF04327;COG2868;K07584	Cysteine protease Prp	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	86	6	7002	7928	MIKVCYSELDGPKGLSLRLEAAGHAGYAPAGQDIVCAGASTLMQALVYLLAGEESARSDAWDEPEGPRLAVAAQAPVAPWVQGAFELAKAGFTLLAERYPDNLRFADVSRSGQQSMMDLQLFAEGEAAPALSPEQTRQAVAAGTLKPEAPAAQPEVPPQTPAEPEPQPETPAQPERPMLPPLPLPVQNTVRSLHARWAAEEAAMRRSQPGFDLKAELKNPEMRRLMQLPGMRVQDAYRLAHYEDALRTTAQTVEQGVVERVQQRAARPLENGLRPGAAASVRPDVAAMTRAQREALERRVLHGAQIEL	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0006	persistent	direct	high	927	1.0	GCA_003324185.1_02277
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	111633	112631	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_87	999	1	0.631	11	AGGA	GENOMAD.004454.VV	7.893e-114	369	0	0	1	1246	Caudoviricetes	NA	NA	PF13252;TIGR04387	major capsid protein, N4-gp56 family	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	87	7	7953	8951	MMNFNIQLFADAQTNTTGTMSVEMKTFYEKRLIDQAEPRLVHDQFADYYPVPQNGGKTIEFRKYDSLPKASTPLTEGVTPNGQALNVTSITSDLHQYGGWTPLTDVLQMTAIDNNVVQATRVLASQAGRTMDSITRDVLAGGTNVIYAPKLGADGAETAVTSRKALDKSCTLTPKLFFQAAAQLGAMNADPIGDSYVAIIHPYAAYDLKTCKEFMEVHKYADPDTMFRGEIGKLGNIRFIETSEAKIWKDDTCPTGLAVFGTLVLGAHAYGVTELEGGGLEHIVKQLGYGDDPLNQRASVGWKGMRAAERLVEQYMVRIESVSSYSATAAAN	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0007	persistent	direct	high	996	0.997	GCA_003324185.1_02278
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	112642	112854	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_88	213	1	0.620	11	AGGAGG	GENOMAD.031309.VV	3.41e-17	76	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	88	8	8962	9174	MAEKNVRIRLFKDNSRYKGDLFVSVNGVNYKIRRGVEVEVPPAVAEVLEHSQRQDELTAARIAAAENAAQ	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0008	persistent	direct	high	213	1.0	GCA_003324185.1_02279
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	112938	113303	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_89	366	1	0.672	11	AGGAG	GENOMAD.018562.VV	4.087e-38	139	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	89	9	9258	9623	MERAEQLRPNCRIETETRLQWLREADALLRTKLFDRTAAGAFDAVGADRPWEQPVQDDQTLLAPPPFDALYPHLLCAQMDAALGETDRYAGEQAQYNALYAELAVWLRQNYPPRSRAQWRW	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0009	persistent	direct	high	366	1.0	GCA_003324185.1_02280
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	113316	115196	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_90	1881	1	0.643	11	AGxAGG/AGGxGG	GENOMAD.019226.VV	1.032e-89	312	0	0	1	1246	Caudoviricetes	NA	NA	PF11134	Phage stabilisation protein	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	90	10	9636	11516	MVLADRIRLANTRQLLRAFGGLNETYGCSEAEYSAGVNFSTRDFPALSTRTPRRRLRALTGLNGMYHLNGLLTVCGRDITYTPDDAAAPAVTKLDAVTDGRKALVGIGTKILIFPDKLAFDTADGSVAALGALWTAAGKSVTFAPCDAAGKTYQVEAFGREEPAEPADGQLFLRVEDADHPWRYDSTLEMYSKNSGSWTAIPLEYCRITAAGLGKLFRQWDTVTVQGAAAEAAGQSPELNGDQIVYDVGEDWLRVRCTPQGEYFYGTLVQNAAAAQWQSMDGKQHRSVEAAQTVSMERRVPELDFVTECDNRVWGCNSRENVIYGCKLGDPTNWFSYRGIAADSYAVTVGSDGAFTGAASCMGYALFFKENTLHKLYGSKPSDFQLSSLRCRGVAKNAARSLCVLNETLYYLSPDGVMAWDGSLPTKVSGALDAAKLANVQSAVGGALDGRYYLHISRESARLLVYDTEKGLWSEEDVCSCDMTSTGGQLYLWDGQALWAADPTREPDWQSTDGVETDIPFELVTGDVGLDGTEQRYLSRLTLRLDAECTSTVEVAVSYDGGAWETVAALAAQGRRRSFDLPFVPRRCGSLRLRLRGKGQITLRSLVRTIAPAKGKLWEEDASWQA	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0010	persistent	direct	high	1881	1.0	GCA_003324185.1_02281
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	115184	115369	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_91	186	1	0.554	11	AGGAGG	GENOMAD.071556.VV	2.903e-29	110	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	91	11	11504	11689	MASMNGLSKLGLPKFSDNMDPEDARALRSYLYQMQEQLQYVLTNLDTENMSDTLRSKLQGL	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0011	persistent	direct	high	186	1.0	GCA_003324185.1_02282
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	115388	116728	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_92	1341	1	0.633	11	AGGAG	GENOMAD.022261.VV	8.267e-179	563	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	92	12	11708	13048	MASKKKEELLQPEMQTQAQPAAQSTYSAEGLNSRADVEKAMANVSYRPGQQVTDAADALKQWQQNRPADYQSSYQDKINSLLGQLLERENFQYSYTRDPLYRQYEQLYTQNAHNASADAAAQAAALTGGYGSSYATSAAQQAYQQQIGGLASAIPTLYNLALDTYQSGGEELVNRLDQLNGQEQNAQTLYDRQLQDYYTQLQQKGEAYNDAYAKDYGQYQEHLNRLDTLHGYYTAQEQAEISQRQQTFNNIMTVLGVIGDVVQLAITGTTGLGTLAGSLLNTGYNIYSGNRAYEAERADTQWSQQMQEKQRQDALTQQQYDNTASERAYQDALKQQAFNNNVTTQKLNIAKGEWALKQANAQQKAAQAASKAAAARTKSGSSSSGKATGSSGSASGGSRSAVSAGVPYTAALLRSQGKNDVAITSALRQEGYTPAQIAKILQEMNK	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0012	persistent	direct	high	1341	1.0	GCA_003324185.1_02283
GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	genomad	CDS	117160	117696	GCA_003324185.1	PXUP01000005.1	GCA_003324185.1|PXUP01000005.1	GCA_003324185.1_PXUP01000005.1	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696_93	537	-1	0.650	11	AGGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad	GCA_003324185.1|PXUP01000005.1	93	13	13480	14016	MTAEQYKPIYHWFSAHPTVKRLVVFLDRWLPLVPFVCYPVLLCLLNVRLSRLFLTQKQAALDFMVLIARSVFVPGLVFWGGTLLRSRLHFPRPYEQPGFTPLVAKESRGHSMPSRHALSAAVLAAVWLYFYPAAGCVMVGVALLICCLRVLTGVHHVRDVVCGFALGFALGCAGMWLL	GCA_003324185.1|PXUP01000005.1|provirus_103681_117696	GCA_003324185.1|PXUP01000005.1@region_103681_117696@tool_genomad_CDS_0013	persistent	direct	high	537	1.0	GCA_003324185.1_02286