core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	742326	743420	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	1	1095	GCA_003351545_1_1_708	GCA_003351545_1_1_708	+	2397276	.	COG3541	Predicted nucleotidyltransferase  [General function prediction only]. 	MPNHLTKGRLKMLTIEDLHTQNLLLLEAVSGSRAYGLATPESDTDIKGVFYLPKSMFYGMEYIPQISNETNDIVYYELGRFIELLLQSNPNTLELLASPPDCVRYRSPLMDAFKTEWFVSKACRQSFAGYAYGQIKKARGLNKKISNPMSSEKKSVLDFCHIVEGAQTVPLRHWLSQRGMEQRRVGLVKIAHARELYALFYDPDGTRGYHGIALKPEATNLSLSSVPEGETPLAYLSFNQDGYSSYCREYASYQQWLAERNEARYRGTQAHGQGYDAKNMMHTFRLLETALDIARHGEIRPRRPNRDELLAIKRGESSYEALLEKAERLMAEVETAFEAADLPETVNAASALAALVSVRESIYG*	mmseqs_cdd	nonviral_gene	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0001	persistent	direct	high	1094	0.999	GCA_003351545.1_00736
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	743421	743681	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	1096	1356	GCA_003351545_1_1_709	GCA_003351545_1_1_709	+	2397276	.	COG3676	Transposase and inactivated derivatives  [Mobilome: prophages, transposons]. 	MAKGYLKIDAPIKEDDKIYLIIRNNAKKKTYFLLSQEIMPNNIAYTDSLSSFAALNISGFHHHRINHSKQFANQQTILTVLKTFKI*	mmseqs_cdd	nonviral_gene	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0002	shell	direct	high	260	0.996	GCA_003351545.1_00737
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	743797	744567	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	1472	2242	GCA_003351545_1_1_710	GCA_003351545_1_1_710	-	2397276	.	PDB:2G1P_B	Adenine-specific-DNA-methyltransferase	MTQKPQPLVPWMGGKRRLAKHLIPMFPEHSCYVELFAGGAALFFLRPQPAKCEVLNDIDGQLINLYRVVQHHFDEFVRQFDWILTSREVFARLQSVPPESMTDIQRAARFFYLQHTAFGGKTVHQHFGTTTTSKAWDASQIRAKLTAARNRLSGVFIENEQWERCFKRYDREHTFFYADPPYWQTAGYDRAFDWAQYQLLAKVMSESKGKIMLSINDHPDIRNLFKDFRIAQFELAYSIGRSKTGKTSGELAICNW*	common_virus_hmm	common_virus	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0003	shell	direct	high	770	0.999	GCA_003351545.1_00738
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	744564	744752	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	2239	2427	GCA_003351545_1_1_711	GCA_003351545_1_1_711	-	2397276	.	COG4416	Mu-like prophage FluMu protein Com [Mobilome: prophages, transposons]. 	MKHRCKNCNKLLAIGTGKFEIRCPRCKAVNTICSLTTRNTPKPDNHSEHRECRFTFDIQETK*	mmseqs_cdd	nonviral_gene	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0004	shell	direct	high	188	0.995	GCA_003351545.1_00739
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	744886	745191	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	2561	2866	GCA_003351545_1_1_712	GCA_003351545_1_1_712	-	2397276	.	.	hypothetical protein	MDKSTGRLKEVAAYAKSVGIAADQLVNAVLGGRPSETLSVRAYRLGVLGGDTRWRRVVWIINKLFWWQKNHCRGAYAAAVNRCLYKNKSPADVWQGGINKR*	.	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0005	shell	direct	high	305	0.997	GCA_003351545.1_00740
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	745201	746739	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	2876	4414	GCA_003351545_1_1_713	GCA_003351545_1_1_713	-	2397276	.	PFAM:PF12571.7	tail-collar-fibre-protein	MANLTETNRWEAGIYQLETSDPVMGGPNGIDNRAPRELANRTLWLKTELAKAVAQIGANKTEAAQAYALKTGQITAGAGLTGGGTLAANRTISLGQPADLTETSESVAVSDTHSHKLPRASSTARGIVRVANTLTGTATDDALSAAMGKKLADEKLGNSGDQTITDGTLTVGRANTWNKIIMPSGRGNWILETNPTAAENVADSIRFNFKFEEPGKKIKALRFHAIGTDGETVAYQSWVMAKAAATAAVKADAKRLTDEDLNSITFPGIYGQRLNVNATAERNYPTKKAGSLLSMPSAYNSDTDIASHQIYIPFDADEIWRRGKDYSGNWTAWAKITVSPAELTAAVESSVPSGAVMHFAMQSAPTGWLKADGSAVSRTQYPALFAAIGTTFGVGDGRTTFNLPDLRGEFVRGWDDGRAIDPGRAFGSAQGDAIRNITGSIDTGGNGGHQLFDEATATGALAISQRRWKAWTSDTQDGRNNPAAFDFDASRVVPTAAENRPRNIALLACIKI*	hallmark_hmm	common_virus	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0006	shell	direct	high	1538	0.999	GCA_003351545.1_00741
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	746752	747081	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	4427	4756	GCA_003351545_1_1_714	GCA_003351545_1_1_714	-	2397276	.	PFAM:PF09684.9	tail-protein	MGTEILGHTVDVSSAEFGEVEITEGYGNKRHNGEIVRNGRHAYGHSDRWAHYRITMPHAITNDQADLLRHTLSAFAPARCVLAALDYQHAALRHNGRALRDGKFNRGTA*	phrogs_hmm	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0007	shell	direct	high	329	0.997	GCA_003351545.1_00742
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	747132	747425	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	4807	5100	GCA_003351545_1_1_715	GCA_003351545_1_1_715	-	2397276	.	PFAM:PF02319.19	transcriptional-regulator	MATSKKAQRLLRVFLAMDAHPIVGISNKELSDGLGIPPASASRDLEDLMAAGLVVRLDNGNYAYSVRTLQIAERFRQQQERLTAKLKEIHDRTSNVW*	phrogs_hmm	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0008	cloud	direct	high	293	0.997	GCA_003351545.1_00743
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	747437	747613	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	5112	5288	GCA_003351545_1_1_716	GCA_003351545_1_1_716	-	2397276	.	TIGR04111	phage-associated protein, BcepMu gp16 family. Members of this protein family occur in Burkholderia phage BcepMu, Pseudomonas phage B3, and Burkholderia phage KS10, and many bacterial putative prophage regions. The member from Burkholderia phage BcepMu is named gp16. Homology suggests DNA-binding activity. [Mobile and extrachromosomal element functions, Prophage functions]	MAITIEKLKENFAKNGQTLAQWARENGFKPRDVYLVVGGQRKGNYGKGHEIAKKLGLK*	mmseqs_cdd	nonviral_gene	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0009	cloud	direct	high	176	0.994	GCA_003351545.1_00744
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	747731	748099	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	5406	5774	GCA_003351545_1_1_717	GCA_003351545_1_1_717	+	2397276	.	COG1396	Transcriptional regulator, contains XRE-family HTH domain [Transcription]. 	MISKSLFGNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGVFMPSGDVLLSFLNMGIDVSSLFAAEQEIRPSENSEISKEESELLGYYRQASDNGKFVILSVAKGAEKKAQTALGKVSNG*	mmseqs_cdd	nonviral_gene	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0010	cloud	direct	high	368	0.997	GCA_003351545.1_00745
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	748101	748724	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	5776	6399	GCA_003351545_1_1_718	GCA_003351545_1_1_718	+	2397276	.	.	hypothetical protein	MDQFELCQKEHINPFALSKQYLLVVTFVKSNSKNFQAALLWARSAKIFENLEIEKETIYCCAFDKTAEQAGMAGVFLNYIENWNGKQIYINGRIHSGSIYDLLGVLDCYQKSQSCPNPKSHCCFVSDDIFLWHGSRPTFEISLDLAGKKKETSSAKKFVMPCINFRHHRIEKETYLGNWNEQIAALAVKQNIDWCPSFDIENFRQYE*	.	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0011	cloud	direct	high	623	0.998	GCA_003351545.1_00746
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	748717	748911	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	6392	6586	GCA_003351545_1_1_719	GCA_003351545_1_1_719	+	2397276	.	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptidase s24 domains [Mobilome: prophages, transposons]. 	MNNYYLYRNCSSDVLWVKRIQRQIDGSLLLISDNATYPPMPLALAEHPDIQIIGQVVQVSKDLN*	mmseqs_cdd	common_virus	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0012	cloud	direct	high	195	1.0	GCA_003351545.1_00747
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	748948	750033	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	6623	7708	GCA_003351545_1_1_720	GCA_003351545_1_1_720	+	2397276	.	PFAM:PF13523.5	acetyltransferase	MENLQYKRFADVNLDDPFFDSLKSSYCEFSDWFRRKAGEYAYVFYGDRGLIDGFLYLKAEPQVIDDCIPVLSTNFSSGWLKVGTFKINAHGTKLGERFIKKIFDYAITYRFNDIYVTVFSEHASLIALFERYGFWREAEKVTANGTELVLTRRFNLIYNGVENTNKNYPLVNFRGDTTYQPQIYLLSIYPEWHTRLLPDSILRTEDTSIIQDVSPTNSIHKVYLTNMGGIEKLKRGDVLFIYRTTDEPGRAYYRALISSVCVVEEYRHINSFDSYAEFEKYCAPYSVFSQEELQRFWQVRKYPHILRFSYNIALPKRIIRKDLLEQVGLSKGEYFGFMPLTHLQAYHILRLGQVNESFVIY*	phrogs_hmm	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0013	cloud	direct	high	1085	0.999	GCA_003351545.1_00748
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	750011	750382	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	7686	8057	GCA_003351545_1_1_721	GCA_003351545_1_1_721	+	2397276	.	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains [Transcription]. 	MKVLLSIKPEYAEKILSGEKKFEFRRVLPKNKAVKKVVIYATLPIGKVVGEFEIAELISESPIHLWERTAEFSGISADFFEAYFEGKDIAHAIKVGKVKKYNRQKDLADILPNGIAPQSFCYI*	mmseqs_cdd	nonviral_gene	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0014	cloud	direct	high	371	0.997	GCA_003351545.1_00749
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	750467	750970	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	8142	8645	GCA_003351545_1_1_722	GCA_003351545_1_1_722	+	2397276	.	CDD:COG3926	Lysozyme	MSDKFTQFIERVLSHEGGYVNHPQDPGGETNWGITKRTAMANGFNGSMRAMTREQAIGIYRKAFWERYHADQMPEAVAFQFFDACINHGYGNAARMLQRAAGVPDDGVIGEISLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHAAADNTD*	common_virus_hmm	common_virus	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0015	shell	direct	high	503	0.998	GCA_003351545.1_00750
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	751049	751309	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	8724	8984	GCA_003351545_1_1_723	GCA_003351545_1_1_723	+	2397276	.	PFAM:PF10841.7	membrane-protein	MRFFKWLSGLVSNPATGNISHTKLWANVAAGTMTFKFMQTADAPEWLWWAYGAMVGGYALIKRGLSVIPQVAEIERREGGGNVDGD*	phrogs_hmm	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0016	shell	direct	high	260	0.996	GCA_003351545.1_00751
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	751293	751679	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	8968	9354	GCA_003351545_1_1_724	GCA_003351545_1_1_724	+	2397276	.	PFAM:PF03245.12	Rz-like-spanin	MWTVIKAWPAALLAAVLLGGTYGAGYVRAKHTCTAETTQMQLTHTAQRLAAEQEYGVKLAAAAAEKQHWYDLSQRQSKELAEAQAELEKSRNTLQEQTRAAVDKDGSSFNGIGPNSLHLYKRAFGYTD*	phrogs_hmm	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0017	shell	direct	high	386	0.997	GCA_003351545.1_00752
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	751699	751878	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	9374	9553	GCA_003351545_1_1_725	GCA_003351545_1_1_725	+	2397276	.	PFAM:PF02402.15	Rz-like-spanin	MPPVSSGLLVKYERPERPTGGSPEQLLNHVIRYGEYCQKLEVQISGWQAWYSKGRLKDD*	phrogs_hmm	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0018	shell	direct	high	180	1.0	GCA_003351545.1_00753
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	752080	752400	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	9755	10075	GCA_003351545_1_1_726	GCA_003351545_1_1_726	+	2397276	.	PFAM:PF07889.11	lipoprotein	MEKTFIHIEFWQLVGFLLSFLGICFTFGKMLLAQFREQQDERQKQQERLQGKVEIMENKLAEFNAGLPLTYVLREDYIRNQVVLEAKLDNVAEKLTEIYKMESVKK*	phrogs_hmm	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0019	shell	direct	high	320	0.997	GCA_003351545.1_00755
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	752397	752714	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	10072	10389	GCA_003351545_1_1_727	GCA_003351545_1_1_727	+	2397276	.	.	hypothetical protein	MISQELIAKQRREGMRWNIINTLNKARPHTTSETFLLDIMNAIYPQTTALELRQQLDYLADRKMVDLNKAPHGLWFADLTSLGVDIAEYTVECRAGIARPEKVWS*	.	hypothetical_protein	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0020	shell	direct	high	317	0.997	GCA_003351545.1_00756
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	752717	753256	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	10392	10931	GCA_003351545_1_1_728	GCA_003351545_1_1_728	+	2397276	.	pfam11985	Protein of unknown function (DUF3486). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are about 190 amino acids in length.	MAQRSSIEKLPEAVRHEFERKLVENGFSDYQAIVEWLQDQGYEISRSAAHRYGQKVQRRFTAIKSSTEAARLIAEGAADEGDTRSEALVAMVQSELFEAMLEIGEMEDLSAVDRFSMVAKAAKNIATLTSASTRLKEYQAKVKAKVAAAADDVAKQARKGGLSDEAAEAIRKQILGIAS*	mmseqs_cdd	common_virus	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0021	cloud	direct	high	539	0.998	GCA_003351545.1_00757
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	753380	754882	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	11055	12557	GCA_003351545_1_1_729	GCA_003351545_1_1_729	+	2397276	.	PDB:4IEE_A	Large-Terminase	MMSPENKIEDRTPMALLPYQQRWCADTSPVKLCEKSRRIGLSWGEAADTALLAASAKGMDAWYIGYNKDMAIEFIRDCANWAKFYGLAAGEIEETEEVFVEGDDKKSVLAFVIRFASGWRVTALSSRPSNLRGKQGRVIIDEAAFHEQLGELLKAAMALLMWGGQVHIISTHDGVDNPFNELITDIRAGKKPYSIHRITFDEAVSDGLYRRICLRLGKEWTKEGEEAWCKEIRDFYGDDASEELDCIPKNGGGKWLNRALIESRMSSYTPVIRYDQSDEFGLLPEPRRAAEVADWIADTLQPLLDGLDKTWVSFVGEDFARSGDRTVIVPLLQQTNLSLKPPFVLELGNMPFAQQEQIMAHLLHGLPNLRGAALDARGNGQSIAEAMRDEFGAEVCESVMLSENWYRTHTAPFKAALEDGTLDAIPKDEDILTDLRAFELVRGVPRIPDVRTKGQDGKKRHGDAAIAFVLAYYASRELNTGPIRVASRRIRRKSALTKGY*	hallmark_hmm	common_virus	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0022	shell	direct	high	1499	0.997	GCA_003351545.1_00758
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	755160	756029	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	12835	13704	GCA_003351545_1_1_730	GCA_003351545_1_1_730	+	2397276	.	PFAM:PF04233.13	minor-capsid-component	MKPEAAVAYLKQKGIAVSWDWQDMLDDAHATAFTVAKTAKMDVLSDIYSAVVDAAEQGRTLEEFDRELAPVLQRKGWWGRQEVKNPEGETQSVQLGSPHRLKTIYLTNMQSAYMAGRYAEMMDSIDTHPYWQYVAINDSRTRETHRMLHGRVYAADDPVWNTLYPPLDYRCRCRVKPLSRSMGESRVQPRPTLESITVDIGANPYTGEARYARRTGIRVNNKFIAPNAGFNANQGKSMLSRMAQIAVEKAQATHPDIARIAIKTMMANQKFKNALTPESLAWVRELLRG*	hallmark_hmm	common_virus	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0023	shell	direct	high	869	0.999	GCA_003351545.1_00759
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	756032	756475	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	13707	14150	GCA_003351545_1_1_731	GCA_003351545_1_1_731	+	2397276	.	PFAM:PF05069.12	virion-morphogenesis-protein	MLEIKLDAERFDHGLSTLLKNATDTRAMMRGIATELLSMTEENFESEGWGGQRWKQSRRAVDEGGKTLQKSGQLAASLTTQVGSNYALIGSNKKYAAIHHLGGQAGRGHKTNLPARPYLPINGNNQLQPDAERRILDIAITALKKGL*	hallmark_hmm	common_virus	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0024	shell	direct	high	443	0.998	GCA_003351545.1_00760
GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote	cenote	CDS	758306	758635	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C56	15981	16310	GCA_003351545_1_1_732	GCA_003351545_1_1_732	-	2397276	.	TIGR01259	comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation. [Cellular processes, DNA transformation]	MKKALFGLLSYAVTALALAAVNINTATVEELKALPGIGPAKAQAIVDYRKENGHFKSVEDLKKVKGIGEGIFGKLKDEATVGTAAPAKTAKPAAVKPAAQPAAGKNAAK*	mmseqs_cdd	nonviral_gene	C56	16310	742326	758636	GCA_003351545.1|CP031252.1@region_742327_758636@tool_cenote_CDS_0025	persistent	direct	high	329	0.997	GCA_003351545.1_00762
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	827035	827670	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	1	636	GCA_003351545_1_1_794	GCA_003351545_1_1_794	-	2397276	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MFPKITNNTLIPTVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDHTANLVVAQMLFLESENPDKDIFFYIDSPGGSVTAGMSVFDTMNFIKPDVSTLCLGQAASMGAFLLSAGAKGKRFALPNSRIMIHQPLISGGLGGQASDIEIHARELIKIKQKLNELLAKHTGQPLEKVERDTDRDNFMSSEAAKEYGLIDEVIATRADAFKAMSK*	common_virus_hmm	common_virus	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0001	persistent	direct	high	635	0.998	GCA_003351545.1_00829
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	827744	829054	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	710	2020	GCA_003351545_1_1_795	GCA_003351545_1_1_795	-	2397276	.	COG0544	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]. 	MSVTLETLENLERKVTLSLPWSSINAECDKRLKQTARKARIDGFRPGKAPLSMIQSMYGAGIQNDVMNELAQKVFFDTAVAEGWKIAGMPRLEGVEGQDDKENFLFSGVFEVFPEVKVGDLSGQEVEKVTATVGDAEVEKTIDILRQQRTRFNHTERAAKDGDRVIIDFAGKIDGEAFAGGSAENYAFVLGQGQMLPEFEAGVNGLKEGESKDVEVNFPEDYHGKEVAGKTAVFTITVRNVAEPVLPEVDEVFAKALGIADGNIETMRAEVKKNVEREVKRRVDSQNKEAAMEALLAVSELQVPNALINEEAARLAAEMKQNFINQGMADAKNLDLPLDMFKEQAERRVKLGLILAEVVQANGLEPSKEQIDAVIADFAESYEDPQEVIDWYHADNSRLQGPTSLAVEANVTDFVLGKAKVTEKALSFDEVMGNQA*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0002	persistent	direct	high	1310	0.999	GCA_003351545.1_00830
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	829294	829953	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	2260	2919	GCA_003351545_1_1_796	GCA_003351545_1_1_796	-	2397276	.	.	hypothetical protein	MKFFWIVILLLLSPLLALLFFRKNGSQAAPSDKSDALLGHAGPAVLPEESEYSEEEADDGSAEALFRQWLGVIYRDKPEEVDAIIANLEENADDEEELDYGSIIESFFLLHNNLNDTEHLFSVDWKDGESFIGFIADIADRFNAKLEWSEEQMEEALPDQLVLAAYSVLLAAGAVLYSVQTGGDYYTFIAVPQQDAADFEHASEQYGLQIWRADSESEF*	.	hypothetical_protein	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0003	persistent	direct	high	659	0.998	GCA_003351545.1_00832
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	830197	830667	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	3163	3633	GCA_003351545_1_1_797	GCA_003351545_1_1_797	-	2397276	.	PDB:1JL1_A	RIBONUCLEASE-HI	MMQETTDKTVYLYTDGACKGNPGTGGWGALLRYRRHEKELFGSEAQTTNNRMELTAVIEGLKALKRRSRIEIHTDSQYVKNGMESWIHGWKKNGWKTAAKQPVKNEDLWRELDRLCGEHDVVWRWVKGHAGHTDNERADALANRGAAAAAGRAGRS*	common_virus_hmm	common_virus	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0004	persistent	direct	high	470	0.998	GCA_003351545.1_00833
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	830696	831640	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	3662	4606	GCA_003351545_1_1_798	GCA_003351545_1_1_798	-	2397276	.	COG3735	Uncharacterized conserved protein YbaP, TraB family [Function unknown]. 	MCKRLIRHAACLLFLSFPALAAAFDWHTPAMDSRLWKISKAGQPDSYLLGTHHVGRSGDALPDNIRRILQQSDRLITEVAMPSKPDAAYSRDVAAMRGRAFQNGGRKLSSVIGVENVAALKKRLSAYPSTAASAAGLDDMTPWGALMLQASVKPQGFQTASGIDRLLARAAEQYRIPADSLERYQDITRPYETLPTARIAELIAANNRHPEQAAAQIERQYALYHSGRLKELIRLSSDSSEYSKGLPPQSTAFWQNWLEQSVLLPRNRAWLPKILNELPKRRNLIAVGIAHLPDENGLIMQLRRQGYTVEPVAE*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0005	persistent	direct	high	944	0.999	GCA_003351545.1_00834
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	831640	833016	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	4606	5982	GCA_003351545_1_1_799	GCA_003351545_1_1_799	-	2397276	.	COG0277	FAD/FMN-containing dehydrogenase [Energy production and conversion]. 	MSAIYQQLAALLLPQEILSEPAGLLTDQRHRYTGTADLVLQPQSVEAVQTIMCFCFEHCIPVTPQGGNTGLCGAAVPSGGVLLNLSRLNRIRSISTADNAITVEAGCVLHDVQQAAEGAGRFFPLSLASEGSCQIGGNIACNAGGLNVLRYGTMRDLVMGLEVVLPNGELVSHLHPLHKNTTGYDLRQLFVGSEGTLGIITAATLKLFALPKSRETAWVGVNGIGQAVELLTLIRERFAERLCSFELISRFALELSSEYSGITPPTDAPWHILLELTDSLSRGDLSDLLAETLTEHGFDNSILAQSESGRRDMWTLRENISAAQRRLGASIKHDIAMPIARVGEFVANCGHALQAAFAGIDIVVFGHLGDGSLHYNTFLPQTADNGVYAYEDAVNKVVYENVLACDGTIAAEHGIGQVKNHWLPRVRSTAEITLMRAVKAAFDPHNMMNPNKLLPEQP*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0006	persistent	direct	high	1376	0.999	GCA_003351545.1_00835
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	833053	833310	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	6019	6276	GCA_003351545_1_1_800	GCA_003351545_1_1_800	+	2397276	.	.	hypothetical protein	METDRPSEKGFQKACRRIGTDRLISTILNCIKPTMVKTKRNAEALLLRMMLYKIICWQQMQLHQQQMQLPRQQMRQPLRQKQQHR*	.	hypothetical_protein	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0007	cloud	direct	high	257	0.996	GCA_003351545.1_00836
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	833636	833773	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	6602	6739	GCA_003351545_1_1_801	GCA_003351545_1_1_801	-	2397276	.	.	hypothetical protein	MMINTVIEMEKYSQGGVEYSCFVYVFCIYLVSKKGDSTLHRFNAV*	.	hypothetical_protein	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0008	.	unmatched_CDS	none	0	0	.
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	833971	834444	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	6937	7410	GCA_003351545_1_1_802	GCA_003351545_1_1_802	+	2397276	.	COG1047	FKBP-type peptidyl-prolyl cis-trans isomerase 2 [Posttranslational modification, protein turnover, chaperones]. 	MIKKDTVVGLHYEMFDANDQLIDKTEQPIVYLHGGYDGIFPLVEEALHEKNIGDEVDVVLQPDDAFGEHDSDLIRIESADAFPTEVKPGMMFEADMPDGDVVVFRVEDVAEGKVVVNGNHPLAGMKIRFKAKIESIRPATAEEIEHGHVHGPHGHHH*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0009	persistent	direct	high	473	0.998	GCA_003351545.1_00837
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	834721	835566	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	7687	8532	GCA_003351545_1_1_803	GCA_003351545_1_1_803	-	2397276	.	PDB:2FJR_A	Repressor-protein-CI	MEYSAQEICDLVSQATAKQIHIDLPSSKSGVKIRAEKEGWKSRIVQGKGGRNGQKTVYSLPNDVIKELQAKGLIPLLEKSHLENKVENQKINEPPAAYLIHQTAIQKRKSGVNEPAIPLVMQDMVNEYDIWSEGQDVSSIVPVRYHTNLFGRAGHGERFDEQLITEAMWFRASFFDVLGVSPDKCFCSRIKGDSMEPTLIDRGTVLWQMTADYLGEGIYLFRQYDDIRIKRLHRINRYTYRIVSDSSNKDSYPTEILDLSQSQDYDFEIYGKYLWDCGIAS*	common_virus_hmm	common_virus	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0010	cloud	direct	high	845	0.999	GCA_003351545.1_00838
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	835840	836871	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	8806	9837	GCA_003351545_1_1_804	GCA_003351545_1_1_804	+	2397276	.	PDB:1BCO_A	Mu-Transposase	MKQIQARKLEEALGGLADLPSPTEMEGKPAVRNEETPLALPETVCIVDGSTEQQRLCESSRRGVLAAVERVMAEAGVSKEAAITTVLTQAKMPGFEHIAKLFSLAADGRGGGGKLPSVRTIKRWFAARERNSLAPKMSQKDMNVPSWLPLFMECYRLPMKPSVAEAYRFFLRRLESDGNECPSIHTVRRWLDKVGNVERERGRRGARDLKNILPHKRRDFMHLKPAAIYTADGHTFDAEVLNPLSGLPFRPEITTVLDVGTRRCMGWSVGLAESRFTVLEALSHASRAAIGALWYVDWGKGFENLMMTDEATGLMGRLGMTMTHSRAYPRTRYQAVIGQNVAD*	common_virus_hmm	common_virus	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0011	cloud	direct	high	1031	0.999	GCA_003351545.1_00839
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	836858	837076	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	9824	10042	GCA_003351545_1_1_805	GCA_003351545_1_1_805	+	2397276	.	PDB:4BIL_D	Large-Terminase	MLRIETLQPHMANGLILLNPDQKTLISQLRHFPKADHDDGPDALHMLWMAATSGRATENMRAYEIPVVPFTI*	hallmark_hmm	common_virus	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0012	cloud	direct	high	218	0.995	GCA_003351545.1_00840
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	837124	838266	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	10090	11232	GCA_003351545_1_1_806	GCA_003351545_1_1_806	+	2397276	.	PDB:5NGD_B	Portal-Protein	MFGLIKGKKRQAAVKHLTAATEDALSNMFADMTGNDTLLARLGVGRQHAFDVVYADDEVAACTEDLRAAMLAKPWRLYGDGLSEEDKDRLWKMLRQHMAALAESVIDARLNGYSVARYVYAQGDDGIRIANVSSKRGELERFVPYRDGSLMYRGTAGEEVCDTNVMYLFLTHRATSTNPAGEMAAARLYAPVALRSKGFVFAAQFITRYAQPYMVAKINAGTDEEHRGFMRRFIDFLGGGAVSIEREDDVKMLQNTADGQAFKRLENLANARIQKTLLGKVKTSDLETGSRAAQETEENNRAERIASYLVMLSRAAQHFVDAAVMVNNAYGRPIHAPKGVWFEFDDEVRIDKTRAERDKMYLDAGQLVLTEEYYRDVLGF*	hallmark_hmm	common_virus	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0013	cloud	direct	high	1142	0.999	GCA_003351545.1_00841
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	838589	840460	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	11555	13426	GCA_003351545_1_1_807	GCA_003351545_1_1_807	+	2397276	.	.	hypothetical protein	MADETAAKVGNIGGEAQKAAQAVEAAFAKIGVDVGQVTDGIITAAQYDQAVAQVKVRTDELAAASAAVGQQAETGYAQASQAAERYGHTVRQAADGHKEVGHAAQASAQTAGGAWGKMTVNVHDYLSMTREQIRAMGDAMKTLTPLGSIGTAGINGGFKEWAARVKTFKDGVREAEAATEALNRAVSDGTVNMEMINRATAAATLQFGRLDDATLDKLNAAVAAARDKMAALKDEAADTVAQLQTELARLRGDGEQARRLEEERKLRELNVKLAEAEAQGNSEAAARYRQAVSLQRQIYRERAEQEEQAEKARAENPQAGLAAAFEAAPPQIGIPLSDLQRLIEARDKRVPVFRKGDMIVIGNRLKQDLGGSFTGGQTVALARQNLDRACLLDAQGKHVSAEKYSIDLAAGKLTFAEPLSLAGHTLPLTAVLAWEEENRITAADVSGRLKLQTPLTRDYPQEGTYVSSALVGGDLLVRATEPFAQKTWDGVWAEAVRGDPILARLNTANYPMALKSNGAVTERWLIRFTGENTYQLYGETLGLVVQGDTVTDLAPPNPATGKPYFTLPAAAFGGGWSAGNCIRFNTYGTPMPVWILRSVQPSAARQTEKDGFTACLRGNTVAE*	.	hypothetical_protein	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0014	cloud	direct	high	1871	0.999	GCA_003351545.1_00842
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	840481	841329	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	13447	14295	GCA_003351545_1_1_808	GCA_003351545_1_1_808	+	2397276	.	.	hypothetical protein	MFQTERVPVTVYRSTDEGAPQLSAAAGSLKTVLKACLTNGYGTKQPLGWEMQYEDGHAACWRSKHNRATGAVLSLDDKGGYGLMQVFQTSSSATAGDKPLIRYDSGYDKFSYYSRNAANAWVLVGHARGFVLILPTDKNALVPFLIFGDYAGLGVSHQENVFVAGIFSNGTEYNSSSKGIRYFTYDYLAVKKSIDVSMVSLADTYGGKYPSPVANGFSASEIYLTEGRAGKDTPLRGLLPGILRIAEEMPDFTAVPVGTVYDNLDASGDAYLAFSANSTCDS*	.	hypothetical_protein	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0015	cloud	direct	high	848	0.999	GCA_003351545.1_00843
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	841804	842265	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	14770	15231	GCA_003351545_1_1_809	GCA_003351545_1_1_809	-	2397276	.	.	hypothetical protein	MKTKGVMLSMLLCAVCTAWAGNDRDAEKIRLVEKIYREQGFMKYASPEFKRIVRKGEKIVYRDEPMGCELFEHYQLGFSNGDSEVPWVQKLKISVRPNGMVHAHYLVEGKRRVDNDFKISCNGGKCMVDDVLYGKSSYRKAYEYIVKFGKCPE*	.	hypothetical_protein	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0016	persistent	direct	high	461	0.998	GCA_003351545.1_00844
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	842407	842946	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	15373	15912	GCA_003351545_1_1_810	GCA_003351545_1_1_810	+	2397276	.	PFAM:PF16262.4	nudix-hydrolase	MDLTETQISSEPIFNGTFVTIACDTVRLPNGNDSKRIVIRHPGAACVLAETPDNKIVFVRQWRYATGQALLELPAGKLDAGEDPAACALRELAEETPYAAEKVELAATFYTAPGFCDEKMYLYRAFNISKSSNLQPDQDEFVETVLLDRQEVLAAVRNNEIQDAKTLIGLQHWLLAEAV*	phrogs_hmm	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0017	persistent	direct	high	539	0.998	GCA_003351545.1_00845
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	843085	843741	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	16051	16707	GCA_003351545_1_1_811	GCA_003351545_1_1_811	+	2397276	.	COG2518	Protein-L-isoaspartate O-methyltransferase [Posttranslational modification, protein turnover, chaperones]. 	MDFAKARFNMVEQQIRPWDVLDFDLLDALEAIPREAFVGEEQKNYAYADLALTLPNGGTMLEPKIVARMIQGLALKKTDKVLEIGTGSGYASAVLSKLAAEVVTVDIDPEQQARAKAVLDGLGYDNIVFQTNDGLMTQNAAAPFDAVYVGGAVDDIPEILKQQLRDGGRLIAVTGSHPVQRARLITRNGDSFSEKTLFDTLIPNLNGKKAAPFGGFDF*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0018	persistent	direct	high	656	0.998	GCA_003351545.1_00846
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	843850	844176	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	16816	17142	GCA_003351545_1_1_812	GCA_003351545_1_1_812	+	2397276	.	COG0607	Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]. 	MYDIPQLTPQQLQDKLSASSDILLLDVREPEEAALCRLPNSILIPMNELSMRQNELPDSKEIIVYCHHGIRSQYCALYLADAGFEQTANLKGGIDAWAREIDPAMPRY*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0019	persistent	direct	high	326	0.997	GCA_003351545.1_00847
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	844263	846419	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	17229	19385	GCA_003351545_1_1_813	GCA_003351545_1_1_813	-	2397276	.	COG0317	(p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription]. 	MSAPQATAPYDPLTAEARSLLFKTASYLSQEDKQRLEKACAYAFRAHDGQTRKSGEPYITHPIAVATELAKWRMDLQTLSAGLMHDVLEDTGTTKEEMAAEFGETVADMVDGLSKLEKLKYDNQTEHQAESFRKLILAMTKDMRVIIVKLSDRLHNMRTLGSMRLEKRRRISQETLEIYAPIANRIGLNPVYRELQDLAFQNIHPARYRTLQKAMNNFRRNRRDVVGKVLAAFSQRLVGANIEAQIKGREKNLYSIHQEMRNKHLRFDEVMDIYGFRVITNSIPACYAALGALHNLYQPKPGKFKDYIAIPKSNGYQSLHTTLTGPHGLPIEVQIRTREMNAVAESGVASHWAYKSGDDKLDQATLNTNKWLQNILDLQARSANAIEFLEHVKVDLFPSEVYIFTPKGRILVLPEGATPVDFAYAVHTDIGNSTVAARVNNSPVPLRTPLKTGDTVEIITSEQARPNAAWLSFAVSSRARSAIRSYIKNMNRHDAVELGESLLQKALSSLLPRDVLLSEELKEAYLNDLTEKQTSFEDVLYNVGMGHTLPVSVAMHIAELAGQHLGGEVKLSPIKINGNETGRVHLGPCCNPIPGDAIRAVLIKDQGIIIHRDTCPNLLKSDSDQQLDADWEAIGGRNYHTNLLVASQDGHGLLAAMAQAMSEQGADIEAVDTPSQSQSGTEGFIEFKFRIKTKDLKQLNSIIHALHSIPNVRRVTRV*	mmseqs_cdd	common_virus	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0020	persistent	direct	high	2156	1.0	GCA_003351545.1_00848
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	846441	846647	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	19407	19613	GCA_003351545_1_1_814	GCA_003351545_1_1_814	-	2397276	.	COG1758	DNA-directed RNA polymerase, subunit K/omega [Transcription]. 	MARITVEDCSDKIPNHFDLTLAAARRARQLENGTAPLVDDVRNDKPTVTALREIAAGQITADILNRSK*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0021	persistent	direct	high	206	0.995	GCA_003351545.1_00849
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	846691	847311	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	19657	20277	GCA_003351545_1_1_815	GCA_003351545_1_1_815	-	2397276	.	PRK00300	guanylate kinase; Provisional	MNKPTPGNIFIISAASGTGKTTLVSRLLSAHADVRVSISHTTRSPREGERNGEHYYFVGTAEFEGMIGKGEFLEHADVFGNYYGTSFSGLQALQREGFDVILEIDVQGAEQVRRALPEAVSIFILPPSFAVLSERLRGRNTDSAEVIEKRLRQARGEIEQSLLFDYVVVNCDLAEAEAQLSAIIRSQRQTQARQKNFIEGLLSENF*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0022	persistent	direct	high	620	0.998	GCA_003351545.1_00850
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	847383	847985	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	20349	20951	GCA_003351545_1_1_816	GCA_003351545_1_1_816	+	2397276	.	TIGR01090	adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage. The trusted cutoff score is made high for this reason. Most proteins scoring between the trusted and noise cutoffs are likely to act as adenine phosphotransferase. [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]	MGVFDFSHEDTAVLIHPEVMGVEALFEKMRKIPNWPEEGILFHDITPILQSPQYFRLLVDLLVYRYMDQKVDVVAGLDARGFIIGAALAYQLNVGFVPIRKKGKLPFETVSQSYALEYGEATVEMHTDAFHSGARVLLVDDLVATGGTMLAGAELICRLGGEVLEAAAILEFTDLPGGKRIRDAGIPLFTLYQNEGCMPK*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0023	persistent	direct	high	602	0.998	GCA_003351545.1_00851
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	848236	849177	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	21202	22143	GCA_003351545_1_1_817	GCA_003351545_1_1_817	-	2397276	.	PRK11669	D-alanyl-D-alanine endopeptidase; Provisional	MFSTPFYKKAAAVFLGLSLASAPVLADDLDVLGQFLQQNLTSDQDPLGTFLAENPDDMLEAQAAIAGPLLSSQAALIVNNRTGEVLYQKNMNRVMPIASISKLMSAMVVLDARLNMNEVITITEDEIDRLKGTGSRLSVGTQLTRAQLLHLSLMSSENRATHALGRTYPGGMSAFVAAMNAKAQSLGMANSRFYEPTGLDYRNVSTAADLNKLAAAASRYPQITKNSTSTYGSVYTSAGRQQDYKNTNALVREGSWDIELQKTGYIRESGRSMVVRARIGREPVTIVLLNSPTSTTRVNDARKIQSWMMQRPS*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0024	persistent	direct	high	941	0.999	GCA_003351545.1_00852
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	849527	850792	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	22493	23758	GCA_003351545_1_1_818	GCA_003351545_1_1_818	+	2397276	.	COG1219	ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]. 	MTTENRHCSFCGKAEQEVKHLIEGENAYICNECVETCGIMLEGGDDAAAEGKASATDGDGKLPTPSEIVANLNDHVIGQEQAKKALAVAVYNHYKRLRHPKAGGAVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQIITKLLGKCDFDVEKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFIQVDTTNILFICGGAFAGLEKVIRQRTEKGGIGFGAAVHSKDENADISELFEIVEPEDLIKFGLIPELIGRLPVIATLAELDEDALINILTEPKNALVKQYQALFAMEGAELEFEPDALRAIAKLAMTRKTGARGLRSIVERALLETMYRLPNLPQVKKAVITAEVIENNRQPVLLLADGKEYQDNAQ*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0025	persistent	direct	high	1265	0.999	GCA_003351545.1_00853
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	850934	851998	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	23900	24964	GCA_003351545_1_1_819	GCA_003351545_1_1_819	+	2397276	.	PDB:4UX3_A	Chromosome-Mainenance-protein	MRHPKSAGNRLPEKWFRRGLWLIAFIFASFLIGLGGKVINDLPSVEQTRELDDYMGEKGILLQQARDRLNEEDTRLTEEAERSALELEKQRNQTAAEQQSLQNWLAARSATEQSEQNPEVIARTRKLDELKAKEQTLQQQYAAIQQRQLDNRQQRDRNEKELEQEQNNASKLKEKDDRRIELQVFLYRLALTLPLLLIGGYLFAKKRRSRWWPFVWGFIYFALFAFFVELVPYLPSYGGYVRYAVGILMTILIGRYAIVAMNRYLERKRNEEALPADERQQQMDYDRAQQCTAKGICPGCERPLDFQHPEMDYCPHCSINLFNRCVNCNTRKSAFNRYCFHCGSAAGPNDTGHK*	common_virus_hmm	common_virus	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0026	persistent	direct	high	1064	0.999	GCA_003351545.1_00854
GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote	cenote	CDS	852086	852346	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C58	25052	25312	GCA_003351545_1_1_820	GCA_003351545_1_1_820	+	2397276	.	COG2388	Predicted acetyltransferase, GNAT superfamily [General function prediction only]. 	MPEIKYLPEQRRFQIDIDGLEAGYIGYTEENGGWNVVHTEVSPNFRGRGIAKMLVDALMAHAEANGIPLSAECDYAARFIGNTDKE*	mmseqs_cdd	nonviral_gene	C58	25312	827035	852347	GCA_003351545.1|CP031252.1@region_827036_852347@tool_cenote_CDS_0027	persistent	direct	high	260	0.996	GCA_003351545.1_00855
GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote	cenote	CDS	2198015	2198458	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C146	1	444	GCA_003351545_1_1_2057	GCA_003351545_1_1_2057	-	2397276	.	PFAM:PF05069.12	virion-morphogenesis-protein	MLEIKLDAERFDHGLSTLLKNATDTRAMMRGIATELLSMTEENFESEGWGGQRWKQSRRAVDEGGKTLQKSGQLAASLTTQVSSNYALIGSNKKYAAIHHLGGQAGRGHKTNLPARPYLPINGNNQLQPDAERRILDIAIAALKKGL*	hallmark_hmm	common_virus	C146	3561	2198015	2201576	GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote_CDS_0001	shell	direct	high	443	0.998	GCA_003351545.1_02133
GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote	cenote	CDS	2198461	2199363	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C146	447	1349	GCA_003351545_1_1_2058	GCA_003351545_1_1_2058	-	2397276	.	PFAM:PF04233.13	minor-capsid-component	MNPEDIKAVFGMKPEAAVAYLKQKGIAVSWDWQDILDDAHATAFTVTKTAKMDVLSDIYSAVVDAAEQGRTLEEFSRELAPVLQRKGWWGRQEVQNPEGETQSVQLGSPHRLKTIYLTNMQSAYMAGRYAEMMDSIDTHPYWQYVAINDSRTRETHRMLHGRVYAADDPVWDSLYPPLDYRCRCRVRPLSRGMGESRVQARPTLESVTVDIGSNPYTGEARYARRTGIRVNNKFIAPNAGFNANQGKSMLSRMAQIAVEKAQATHPDIARIAIKTMMANQKFKNALTPESLAWVRELLRG*	hallmark_hmm	common_virus	C146	3561	2198015	2201576	GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote_CDS_0002	shell	direct	high	902	0.999	GCA_003351545.1_02134
GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote	cenote	CDS	2199360	2199797	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C146	1346	1783	GCA_003351545_1_1_2059	GCA_003351545_1_1_2059	-	2397276	.	COG4383	Mu-like prophage protein gp29  [Mobilome: prophages, transposons]. 	MLFENEESGTRERAERDKMMVDAGAKFTNQYWQRTYGLREGDLVEDVQATPEAKAADFTEGDLTDAGLVIDGLAPDTGRLNEQGERLTAVLVSELRQGETAENLLDRLTAAYPNMDDTALQNELARLIFLSDLVGRIEVVQELKS*	mmseqs_cdd	nonviral_gene	C146	3561	2198015	2201576	GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote_CDS_0003	shell	direct	high	437	0.998	GCA_003351545.1_02135
GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote	cenote	CDS	2199827	2199937	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C146	1813	1923	GCA_003351545_1_1_2060	GCA_003351545_1_1_2060	-	2397276	.	PFAM:PF04985.13	head-closure	MSAINAIYNANVYIDGNSLLGNASEFKLPEFEFGQR*	phrogs_hmm	hypothetical_protein	C146	3561	2198015	2201576	GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote_CDS_0004	cloud	direct	high	110	0.991	GCA_003351545.1_02136
GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote	cenote	CDS	2200354	2200491	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C146	2340	2477	GCA_003351545_1_1_2061	GCA_003351545_1_1_2061	+	2397276	.	PFAM:PF02086.14	DNA-methyltransferase	MLSINDHPDIRNLFKDFRIAQFELAYSIGRSKTGKTSGELAICNW*	phrogs_hmm	hypothetical_protein	C146	3561	2198015	2201576	GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote_CDS_0005	shell	direct	high	138	1.0	GCA_003351545.1_02137
GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote	cenote	CDS	2200608	2201018	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C146	2594	3004	GCA_003351545_1_1_2062	GCA_003351545_1_1_2062	-	2397276	.	.	hypothetical protein	MQGDLLPIAIGSIVGGLFGGILSIVILWVMSNKAQRTYPALSIPVPNGARYSPYFELWAQLNKYRRTEENCYTKGCGLLTSSTEIRFHGNEMEIVEVVNFLFAKRRFAINAPVMFGKPVRRHKIKQINKLLEHWQC*	.	hypothetical_protein	C146	3561	2198015	2201576	GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote_CDS_0006	persistent	direct	high	410	0.998	GCA_003351545.1_02138
GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote	cenote	CDS	2201117	2201575	GCA_003351545.1	CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545.1_CP031252.1	GCA_003351545.1|CP031252.1	GCA_003351545_1_1	GCA_003351545_1_1@C146	3103	3561	GCA_003351545_1_1_2063	GCA_003351545_1_1_2063	-	2397276	.	PF17274.2	Family of unknown function (DUF5339)	MKTSALLASLLAALALSACGGDSGSTNSASATGGNAATSGSVCDEYEKAFAASIANVDAATKEAMQKAFDQSKEALQNLPADQKEAACKVSLDALNGKAPAGVPTSAEDAKEAASEAAEEAKEAAADAKEAASEAAEEAKEAAAEAKEAASK*	hhsuite_tools	hypothetical_protein	C146	3561	2198015	2201576	GCA_003351545.1|CP031252.1@region_2198016_2201576@tool_cenote_CDS_0007	persistent	direct	high	458	0.998	GCA_003351545.1_02139