core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	860006	860098	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	1	93	GCA_003351605_1_1_808	GCA_003351605_1_1_808	+	1804746	.	.	hypothetical protein	MAAEKLTKKRLAQILIMLCILIIAFVWRYF*	.	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0001	shell	direct	moderate	92	0.989	GCA_003351605.1_00842
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	860637	860915	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	632	910	GCA_003351605_1_1_809	GCA_003351605_1_1_809	-	1804746	.	PFAM:PF13591.5	DNA-binding-protein	MEPIKLSQKAEEEIVNAARMAALSNLTEKSQNLITLEDIAIYFGRHYQTVAKIISKLPNFPKPVTVDQQNSRPRYIAGEVLRWGRINAKRIS*	phrogs_hmm	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0002	shell	direct	high	278	0.996	GCA_003351605.1_00844
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	860957	861076	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	952	1071	GCA_003351605_1_1_810	GCA_003351605_1_1_810	-	1804746	.	.	hypothetical protein	MNKLIITLVCAFVVYMAHALNFNQDCDGKICHTEQTQQY*	.	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0003	shell	direct	high	119	0.992	GCA_003351605.1_00845
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	861207	861773	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	1202	1768	GCA_003351605_1_1_811	GCA_003351605_1_1_811	-	1804746	.	COG3561	Phage anti-repressor protein  [Mobilome: prophages, transposons]. 	MTHLNLIPVFNGLIQNQPVQLCNARELHAFVESKQQYTDWIKNRINEYGFIQDEDYLVITERTNGRPRKEYHITLDMGKELGMVERNERGRQIRQYFIRCERTLKALQQPQQLALPEPEKFTHELTEFEIETLVWLLIGHHQMNTLLGDMIKPLETIGSYFTGMVISHHQEYRQQYKNTLHSEMNCTI*	mmseqs_cdd	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0004	cloud	direct	high	566	0.998	GCA_003351605.1_00846
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	862081	862368	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	2076	2363	GCA_003351605_1_1_812	GCA_003351605_1_1_812	-	1804746	.	.	hypothetical protein	MNRYEALGRYVEAKEKLDRLKRERDITTTQLEKAFSGLKHINNFGFEPQSDIQSATQDIETLLERYKALNNDITALVTESNQYAELCDKPQIEIK*	.	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0005	cloud	direct	high	287	0.997	GCA_003351605.1_00848
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	862746	862940	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	2741	2935	GCA_003351605_1_1_813	GCA_003351605_1_1_813	+	1804746	.	PFAM:PF16777.4	transcriptional-regulator	MTRGRPKSGLTLTELQKRSDEKRGVKAKTYKLPIETIAKIEQLAQSLNIPQNQLIVKMVEGFKG*	phrogs_hmm	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0006	cloud	direct	high	194	0.995	GCA_003351605.1_00849
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	863422	863631	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	3417	3626	GCA_003351605_1_1_814	GCA_003351605_1_1_814	-	1804746	.	.	hypothetical protein	MKKYLFHYYFQGTKWACDVYANNPEEAKEKIKAMSQAIYDGELKFEIHIPENPLSKLARLVARIIKKFT*	.	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0007	shell	direct	high	209	0.995	GCA_003351605.1_00850
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	863645	863806	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	3640	3801	GCA_003351605_1_1_815	GCA_003351605_1_1_815	+	1804746	.	COG3422	Uncharacterized conserved protein YegP, UPF0339 family [Function unknown]. 	MKFETYVDSRIEWRWRLKADNGKIIADSGEGYKNYTDCLHAIDLVKSTKVEMA*	mmseqs_cdd	nonviral_gene	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0008	shell	direct	high	161	0.994	GCA_003351605.1_00851
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	864229	864603	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	4224	4598	GCA_003351605_1_1_816	GCA_003351605_1_1_816	-	1804746	.	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains [Transcription]. 	MKILLSIKPEFVEKIISGEKKFEFRKSLPKREGITTIVVYSTMPVGKVIGEFKVKNTHSYDPEYLWEKTKEFSGITKNFFDEYFSTKALAHAFEIDSFKLYDEPLVISDILPSGTPPQSYCYIN*	mmseqs_cdd	nonviral_gene	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0009	cloud	direct	high	374	0.997	GCA_003351605.1_00852
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	865345	865614	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	5340	5609	GCA_003351605_1_1_817	GCA_003351605_1_1_817	-	1804746	.	PFAM:PF13523.5	acetyltransferase	MDNLKLEYFSNINLNDQFFDSLKSDYKEFSDWFNKKQEKNECAFIFINDQGLLDGFLYLKIEDEELNDIKPNLPSKNKSTWNETRRAIY*	phrogs_hmm	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0010	cloud	direct	high	269	0.996	GCA_003351605.1_00853
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	865671	866327	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	5666	6322	GCA_003351605_1_1_818	GCA_003351605_1_1_818	-	1804746	.	pfam00717	Peptidase S24-like. 	MATLGERIKAYREQLKISQKELAERCNNIDTKSENARWGQPRIANYEKGNRTPDLEDISIISKALNILPEVLAFDSNISEIKESICRYPLLSPIQAGLWTDIRSLEGFDGYEMIPSTAIASENSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDNEATFKQYKELGTRTPEGIPHFELVPLNPMFPTLSSLNQEIRIIGVARERVETL*	mmseqs_cdd	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0011	shell	direct	high	656	0.998	GCA_003351605.1_00854
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	866685	866981	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	6680	6976	GCA_003351605_1_1_819	GCA_003351605_1_1_819	+	1804746	.	PFAM:PF10078.8	CII-like-regulator	MARNKLTRSARVLSDQVIDKYYKQKQYEVAEGMETTPSTLSRFISNEEFTQTFNFIAACQFGVFDTDTHIAIEKSEFEMLLLASQGFDKRLREKYLGK*	phrogs_hmm	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0012	shell	direct	high	296	0.997	GCA_003351605.1_00855
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	867029	867697	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	7024	7692	GCA_003351605_1_1_820	GCA_003351605_1_1_820	+	1804746	.	PFAM:PF03374.13	KilA-protein	MNQLLTMTKENASILTMSSREIAEITHKEHKNVLRVIRDLIEQNLVAQIEPLKFEYRNQWFDYYELNKRDTFVVVARLSPEFTAAVVDRWQALENRQKPTALIPQSFSEALMLAAQLQAEKERNAPKVAFVDHYVEVGTSKSFRETAKILKIPERALVNRLVEDKYLYRQSGVLLPYQSAHTKDLFTVKTGTAEHGHNYTQTRVTSKGIEFIASRYASELML*	common_virus_hmm	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0013	shell	direct	high	668	0.999	GCA_003351605.1_00856
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	867694	868416	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	7689	8411	GCA_003351605_1_1_821	GCA_003351605_1_1_821	+	1804746	.	pfam13730	Helix-turn-helix domain. 	MSMRLMVQAMNCKVGNPARKLVLLKLADNANDDGICFPSYQYIADKCEMTRRSAISHIECLIKMGLVSKKERKNKDGSISNLYFLHLEQGSENFALGGENISLGSENFALGGSENISPITSHSLEPVNEPKKTTQKSESEILLERFGITGQLAKDFIAHRKTKRGAISETQLSRLQKQADKAGISICEAVEICIERNWQGFNASWDWRDEKLRTSQAQKMSFEEKNALPWNRPEDWENVL*	mmseqs_cdd	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0014	shell	direct	high	722	0.999	GCA_003351605.1_00857
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	868413	869033	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	8408	9028	GCA_003351605_1_1_822	GCA_003351605_1_1_822	+	1804746	.	PFAM:PF06992.10	Replication-protein-P	MNQLTNQSLHQGVSAQVEKFIDTLFDQLCASCPQLLNLTPERLQVVKRQWILGFAENGITKITQVKRGMAEMRAKPNGYLPSVGEFIQACKVLDYHELGLPNEAELYQRYNTFLGYARFNRDEFQYRSKVEFWLLKNLYEKCKKKSEEDTLKAIPKLLTKAAEKVRSNFPFEDIPKMIPTKPSFYDKAKADKARDSLMAMMKGALQ*	rep_hall_hmm	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0015	shell	direct	high	620	0.998	GCA_003351605.1_00858
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	869030	869254	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	9025	9249	GCA_003351605_1_1_823	GCA_003351605_1_1_823	+	1804746	.	.	hypothetical protein	MTSYKCPKCGAELEDFYTPDYFISSSEWDDDRFRCNGHLIEPIPFPQVSKYSAVNRTKSCGYFGLEDLGVEYKE*	.	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0016	shell	direct	high	224	0.996	GCA_003351605.1_00859
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	869518	869709	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	9513	9704	GCA_003351605_1_1_824	GCA_003351605_1_1_824	+	1804746	.	pfam05772	NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	MVSAHKIATGGQAEMVIGLEGEVINLRESTAQMGVKRLASLIEYIQSWGVQNGVRFNDRWGFK*	mmseqs_cdd	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0017	shell	direct	high	191	0.995	GCA_003351605.1_00860
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	869798	870340	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	9793	10335	GCA_003351605_1_1_825	GCA_003351605_1_1_825	+	1804746	.	PFAM:PF05766.11	NinG-recombination-protein	MAKEYKCKVCGKAFVKTFSSTQKVCSPECAIKLARDNAKKAQERAEKKKQRERKAKLKSRSEWLKEAQAAFNKFIRLRDKDQPCISCGRYHQGKYDAGHYRSVGACPELRFCEINCFKQCVPCNQHKSGNVIEYRINLVKRIGEDKVAWLECQDHDPKKYTIEDCKAIIKYYKAKIKELT*	common_virus_hmm	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0018	shell	direct	high	542	0.998	GCA_003351605.1_00862
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	870337	870708	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	10332	10703	GCA_003351605_1_1_826	GCA_003351605_1_1_826	+	1804746	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MNIDVISVEFGYWATPRYETEFPRVAAGFAEMKCDACYAEKYRMRPISDELGMEIDGYLGVIRKVTPELYDVFVLTYIKRWEKQEIWRYLHISRREYFNRLKTVKTSLLLLLSTEGKQCLFIA*	phrogs_hmm	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0019	shell	direct	high	371	0.997	GCA_003351605.1_00863
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	870766	870951	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	10761	10946	GCA_003351605_1_1_827	GCA_003351605_1_1_827	-	1804746	.	PFAM:PF16777.4	transcriptional-regulator	MAMTRAEINAKSDKKRGVRLQSYKLHEDIIKLLAELSEKTGKSKTAIVTEGILAMEKTYKN*	phrogs_hmm	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0020	shell	direct	high	185	0.995	GCA_003351605.1_00864
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	871391	872194	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	11386	12189	GCA_003351605_1_1_828	GCA_003351605_1_1_828	+	1804746	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MTDGARNTIPKGNNSARLFTGFEPLVAQLWVNYQSSQKGINSMNTQIQFSAFTFKSNSVRVITDKNQEPWFCANDVCDILGYSNSRDAISKHCKTGGVAKRDTPTKSAVQEMTFINEPNLYRLIIKSRKPEAEPFEAWVFEEVLPQIRKTGKYQLQPQQLALPEPEKKFTREFTEHDLQQLVWAWFALLRGTELCQVLHPALKQIGSHYAASVHDIAYEYRSNLRQAHNVLTRITEQFECEQGNNWRVLKYLRAYNPKATGFQLEIL*	common_virus_hmm	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0021	shell	direct	moderate	677	0.842	GCA_003351605.1_00866
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	872580	872753	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	12575	12748	GCA_003351605_1_1_829	GCA_003351605_1_1_829	+	1804746	.	.	hypothetical protein	MIKYNRTKLKIHPKEGLNMETYSTPVIRGAIAFAIVALAVGICLLFATPFISAVRWW*	.	hypothetical_protein	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0022	cloud	direct	high	173	0.994	GCA_003351605.1_00868
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	872949	873305	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	12944	13300	GCA_003351605_1_1_830	GCA_003351605_1_1_830	+	1804746	.	TIGR01594	phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda. [Mobile and extrachromosomal element functions, Prophage functions]	MPIKEPDVWALIWSWLQTHLSSSSAQSAFWALFISLLRFGFMRKKPAIRYVLIDAAMCASIAGVAVPICTHLFGHTEYSSFLGTMIGFVGTEKIREFLFKFINRRIEKDDNDDFRRDI*	mmseqs_cdd	nonviral_gene	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0023	shell	direct	high	356	0.997	GCA_003351605.1_00870
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	873274	873876	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	13269	13871	GCA_003351605_1_1_831	GCA_003351605_1_1_831	+	1804746	.	PDB:3WH1_A	Chitinase-	MTMMISEETFNKIFSHAVKGVYQAISTQIEKAGCVNKIQQAMFLAQCGHESGGFTRFKENLNYSWLGLSKTFRKYFPDPLTAKRYERKPELIANRVYANRLGNGDEKSGDGWKYRGRGLIQITGKDNYAAFRKWLGRDIEPEDVAGNLDLSVKTAVWYWKCYELAELNSVEKVTRRINGGLNGIDERCKLYRALMVTDND*	common_virus_hmm	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0024	shell	direct	high	602	0.998	GCA_003351605.1_00871
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	873887	874192	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	13882	14187	GCA_003351605_1_1_832	GCA_003351605_1_1_832	+	1804746	.	pfam10828	Protein of unknown function (DUF2570). This is a family of proteins with unknown function.	MALAGVVVVLIGALRYQSSVIDELNITTKQQAQTIQQQENANKALTIALQQERDAVIEQQERNDEIERMATENAESVKTIIKTQPCAHTRLPQSVLDRLYK*	mmseqs_cdd	nonviral_gene	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0025	shell	direct	high	306	1.0	GCA_003351605.1_00872
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	874494	875015	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	14489	15010	GCA_003351605_1_1_833	GCA_003351605_1_1_833	+	1804746	.	TIGR02681	phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein. [Mobile and extrachromosomal element functions, Prophage functions]	MNLQKIENFEQFLKVNDKQRIVTNSRHIATVFGKRHDNIIRDIKALVIEQDCGEFALLNFEETSYFDEWGRKQPMYQMTKNGFLLLVMGYRTQKAMKFKVEFIKAFDFMREKLQQEGYSLMHKYNELCIEHKAKKAFASLCGKGLREWKGDKPVLEATLKLFGDKMQIELPIK*	mmseqs_cdd	nonviral_gene	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0026	cloud	direct	high	521	0.998	GCA_003351605.1_00873
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	875025	875597	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	15020	15592	GCA_003351605_1_1_834	GCA_003351605_1_1_834	+	1804746	.	PFAM:PF03592.15	Terminase-small-subunit	MSDVKGKSTSGRGLTPKQEKFCQLYIELGNASEAYRQSYDCSKMTTEVINVKASELLNKNGKITVRVEELRQAHQQRHNLTLDNIIADLQEYRDICMGRKPLTITTVVKNAQEGTAQSVNTECFVFEPTGANKALELLGKHLGMFTQKMELSGDLHIEQRAELNLSGLSIDELEQLEKLLAKGNPEQDSD*	hallmark_hmm	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0027	shell	direct	high	572	0.998	GCA_003351605.1_00874
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	875536	876996	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	15531	16991	GCA_003351605_1_1_835	GCA_003351605_1_1_835	+	1804746	.	PDB:8DGC_F	Large-Terminase	MNLNSLKNYSPKEILSKIRIEKAKKSLMHFTTQTKPDFVTGWFNILIAKELQQFYQDVIDGKQPRLMIFAPPRSGKSELFSRRFPAWAFGKKPDLQMIACSYSADLASRMNRDVQRIMDDDSYHDIFPESSLNDKRIATVSGQPLRNSEIFEIAEHKGAYRSAGVGGGITGMGADIAIIDDPVKDAKEANSQTVRDGVWDWYTTTLYTRLSPKSGVLLGMTRWHEDDLAGRLIEEMKNGGDQWRIVKFPAIAEEDEEFRKEGEPHPERFDLERLSKIRKAVGSQAWNALYQQRPSNKGGGIIKGSWFGRYKIPPLIKVKAIYADTAQKIKQHNDYSVFIVAGRGSDRKVYILDLVRGKWEAPELEQTLKDVWAKHKARKDTGILTRANVEDKASGTGLIQAIRRNNQIPISPIQVDADKYTRVLGVQGYIESGYVMIPENAPWVADFISECEAFTATDSHAHDDQVDALVMAITDILGKPKSLLDL*	hallmark_hmm	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0028	shell	direct	high	1460	0.999	GCA_003351605.1_00875
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	876998	878329	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	16993	18324	GCA_003351605_1_1_836	GCA_003351605_1_1_836	+	1804746	.	PDB:8HDS_J	Portal-Protein	MNILDGIKSLALKLGSKQDQTYYARGLSLTDDLMQIEALWRDNWIANKVCIKRSEDMVRNWRDIFSNDLKSEQLDEFTKLERRLKLRETLTKALQWSSLYGAVGLVVTDIINITSPLQPTERLKRLIILPKWKISPTGQRDDDVFSPNFGRYSEYTITGGTQSVSVHHSRLLIINANDAPLSDNDIWGVSDLEKIIDVLKRFDSASANVGDLIFESKIDIFKIAGLSDKISAGLENDVAHVISAVQSIKSATNSLLLDAENEYDRKELSFGRLKDLLTEFRNAVAGAADMPVTILFGQSVSGLASGDEDIQNYHESIHRLQEARLRPIFEVIDPMICNELFDGNPADWWFEFMPLTTVKQEQQINMLNTFATATNTLIQNGVLNEYQIANELRESGLFANISAEDIEEMKNVNEFAGNFEEPENTEDAQVQASEDEQENGALV*	hallmark_hmm	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0029	shell	direct	high	1331	0.999	GCA_003351605.1_00876
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	878358	879539	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	18353	19534	GCA_003351605_1_1_837	GCA_003351605_1_1_837	+	1804746	.	PFAM:PF04233.13	Minor-capsid-component	MTDDVERAMQQPQGSFFMDDAKGFQAISAKALMKVLEKYEKSDRTSQAENIANGFVGRGDAQNHAEVSTNLKNQTGIDLSAYLRNSPNIAERVNALTAGNIQLIKSIRSQYLDKVQNTVMQAMVRGSLNKDLSAQIKDLGKTTEKRAMFIARDQSSKLNAALTQARHEEVGIKKYMWSASLDERVRESHAEKDGQIFEYANPPVDTGHPGHDFNCRCVQIPVFDDVVNLKSEETELSYQATEPNKIGKMDLDELFESSIGGGGNKSFSNFGGVNSELIALAKESIGLDITDWQHSIDESSIRHILKQHGNEKAENKRGQRAVTKKDILLLPLVVSAFDSIEYTGTSDSGNETFLIKKEIDDEIFSVQEVRKRHKKIAVKTMWIKRKKKATSTT*	hallmark_hmm	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0030	shell	direct	high	1181	0.999	GCA_003351605.1_00877
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	879680	880780	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	19675	20775	GCA_003351605_1_1_838	GCA_003351605_1_1_838	+	1804746	.	PFAM:PF09979.8	head-maturation-protease	MKFTDKTTQAATQRTITKDGFLVVPATISKVGVFDYLATELGLKEDGIKKVARTEKSLFSDATIKSFENATLTVGHPKDGVNAKNWKQLSVGVVRNVKRVGDELTAEAWIYDEQAIKTVQEHGVEQLSCGYDCDIKPSTVQDADFEMSPMIGNHVAIVAKGRCGGGVKLADEDKTIMGKTAKILDAFLDAFGIKLSDEQKKQIEDEEKSGSEEGKEPKGKQPTEPKEKQSEPENKKEDDVEKEELEKRLKAKDEEIQQLKDAQAKRDAEVKQAAVLADAKTAFKEVNFADNATVREIQESAVVAQGIFTKDEAAKLSDEEISGAYQTAKAVVAKLADERKSLGSILLGDAESKAAPKIDFNKTYNS*	phrogs_hmm	nonviral_gene	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0031	shell	direct	high	1100	0.999	GCA_003351605.1_00878
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	880793	881248	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	20788	21243	GCA_003351605_1_1_839	GCA_003351605_1_1_839	+	1804746	.	pfam11041	Protein of unknown function (DUF2612). This is a phage protein family expressed from a range of Proteobacteria species. The function is not known.	MSYAYEQAPARAGEVGKHVGQFRVINGYQLRKFFGFRNSSNALGFSQKRLGGAQWYRKRDQLSDSVKLSDDDYRFLIKCRILKNYQIGTLPNLIEACLFIFGEGCHIVDNYDMTVSISVPSASTSDFKKFAINHLDILPRQAGVQYLFNLT*	mmseqs_cdd	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0032	shell	direct	high	455	0.998	GCA_003351605.1_00879
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	881281	881919	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	21276	21914	GCA_003351605_1_1_840	GCA_003351605_1_1_840	+	1804746	.	pfam03406	Phage tail fibre repeat. This repeat is found in the tail fibers of phage. For example protein K. The repeats are about 40 residues long.	MKAFLHHLQNEAKLIISPTYCVDGEFALNEIARATLQQYGIVQLSSATNSDSETEAATSKAVKTAYDKAVEAKTTSDGKVGLNGNESINGEKTFENRIVAKTNIRISDIQHYASRGDYLNIGANNGDCWFEYKSSNREIGTLRMHANGDLTYKRQKIYHAGAKPQFNTDIEGKPNTLAGYGIGNFKVEEFRGNLNELLTALEQEIEQWQFPT*	mmseqs_cdd	common_virus	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0033	shell	direct	moderate	599	0.937	GCA_003351605.1_00881
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	882150	883169	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	22145	23164	GCA_003351605_1_1_841	GCA_003351605_1_1_841	+	1804746	.	TIGR01036	dihydroorotate dehydrogenase, subfamily 2. This model describes enzyme protein dihydroorotate dehydrogenase exclusively for subfamily 2. It includes members from bacteria, yeast, plants etc. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]	MYQLFRHGIFQMDAEKAHDFTIQCLKLASNPLFQPILKSLIHAPKGFPKTVMGVNFPNPIGLAAGADKNGDAIEGFGALGFGFLELGTVTPVAQDGNAKPRQFRLIEAEGIINRNGFNNNGIDYLIENVKNARYKSVIGINIGKNKFTPLEQGKDDYIFCLNKAYNYAGYITVNISSPNTPDLRQLQYGDYFDDLLRSIKDRQAILANQYNKYVPIAVKIAPDLTESELVQIADTLVRHKMDGVIATNTTISRDTVMGMKNAEQQGGLSGKPLQHKSTEIIKRLHQELKGQIPIIGSGGIDGLKNAQEKIEAGAELLQVYSGLIYHGPKLVKELVKNIK*	mmseqs_cdd	nonviral_gene	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0034	persistent	direct	high	1019	0.999	GCA_003351605.1_00882
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	CDS	883169	883993	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	23164	23988	GCA_003351605_1_1_842	GCA_003351605_1_1_842	+	1804746	.	3O0F_A	putative metal-dependent phosphoesterase	MTKKYDLHCHSSASDGVLSPTELVHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGVEISTNWEGRGIHIVGLNFDKTHPKMTALLQSQKALREKRAVEIGDKLEKAGIPNAYEGAKALADGEVTRAHYARYLVQIGKVSNDGQAFKRYLGQGKSAFVKAEWTDIPTAIETIHAAGGIAIIAHPLRYNMTGKWVRKLITDFKAWGGDGMEMADCGQTKDQRQMLARWAKEFDLLGSVGSDFHFPCGWVELGKNLDLVDSVIPVWEKF*	hhsuite_tools	nonviral_gene	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_CDS_0035	persistent	direct	high	824	0.999	GCA_003351605.1_00883
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	994479	994895	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	1	417	GCA_003351605_1_1_936	GCA_003351605_1_1_936	-	1804746	.	CDD:TIGR01635	phage-virion-morphogenesis-protein	MIDIEINNAQEVTALLERLAQATAHRAPLMRSIAGTMESAVLQNFDVGGRPKWLGLKYRQGTPLVDTENLMASITSEYNNNEAIVGTNEPYAAIHQFGGKAGRGRKVAIPARPFLILTPQDEADILEDIQDYFQRLIK*	hallmark_hmm	common_virus	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0001	shell	direct	high	416	0.998	GCA_003351605.1_00975
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	995031	996323	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	553	1845	GCA_003351605_1_1_937	GCA_003351605_1_1_937	-	1804746	.	PFAM:PF04233.13	minor-capsid-component	MPSAPKFAIGVEPKQAIEFLRQKKMLASKVLAKEMHDSALARATTIAHLTSLDMTKDIYQSLETAMREGKGFHVWKKELVSEFERKGWIFGKDPSIRGIDGHLLADPKTGEYFGTPRRLNTIYRVNMQSAYSAARYQRLRANVDNRPYWQYSAVGDARTRPAHLALSGKVYRYDDPFWATFYPPNGFNCRCTVIALGERDLKRRGIDKPDDSSEFLVEVERPADKQGNREKTVGFKLPDGTIRVTDKGFDYNVGRLNYKPNLDLYPEKLAHAFAKVEMKGGEFKHDFELLAKHVAEMKQTLSPDGKKLTAEQMLQVRDSLTKNFKFAAGVLSAESKDLLKSKTGTVWLSDDTLIKQFNSRDGQDFGIDEYEALPDIINSPEHLLQVKDFTERYTFIRQGKMLVVKILPKEIFVLSFRLVSDKQWRKAFKE*	hallmark_hmm	common_virus	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0002	shell	direct	high	1292	0.999	GCA_003351605.1_00976
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	996307	996870	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	1829	2392	GCA_003351605_1_1_938	GCA_003351605_1_1_938	-	1804746	.	pfam06074	Protein of unknown function (DUF935). This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu gp29 protein.	MQINVDPNIAPHRIPYFEFDTKEYEDLSVFADAIPKLTGIGVQISESWVRDKLGIPEPQEGELILSAPQGEKTDEKTTALSTMLNYGKGCTCGCRAAALSAQNGKKDEQDELDGLIDDALANADFNQQLDPMMKQIVGVVMASESYDEAQEKLIALYPDLTSESHQAYLASAVFLADLLGAANAERT*	mmseqs_cdd	common_virus	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0003	shell	direct	high	563	0.998	GCA_003351605.1_00977
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	996918	997388	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	2440	2910	GCA_003351605_1_1_939	GCA_003351605_1_1_939	+	1804746	.	PFAM:PF05840.12	nicking-at-origin-of-replication	MTKRGDQPICIEYEECEPNKYGEIRKKIVGVKNRFTEKKIITKLKNWVIKSAKSALGSTALNSETTETNKAHRAAWTCVNNCNRSKIEQQANLLMLPIGSPLKPSQIDLLMSHGRLRLNDYRWICCENDEVFIKEEKIPLAQAFGWGESLGDFRVN*	phrogs_hmm	hypothetical_protein	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0004	shell	direct	high	470	0.998	GCA_003351605.1_00978
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	997443	997601	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	2965	3123	GCA_003351605_1_1_940	GCA_003351605_1_1_940	+	1804746	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MADLQQLIKNIEQWAEDRNLIEGSTPQKQFIKLMEEFGELCSSVAKFILFET*	phrogs_hmm	common_virus	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0005	shell	direct	high	158	0.994	GCA_003351605.1_00979
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	997651	998241	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	3173	3763	GCA_003351605_1_1_941	GCA_003351605_1_1_941	-	1804746	.	PDB:1Z19_B	Integrase	MGFYNRTPLKYLEKPKAPAPRTRRYDEHEIERLIFVSGYDVEHIEPPKTLQNCTGAAFLFAIETAMRAGEIASLTWNNINFERRTAFLPITKNGHSRTVPLSVKAIEILQHLTSVKTESDSRVFQMEARQLDHNFRKLKKMEGLENANLHFHDTRRERLAEKVDVMVLAKISGHRDLSILQNTYYAPDMAEIAQRL*	common_virus_hmm	common_virus	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0006	shell	direct	high	590	0.998	GCA_003351605.1_00980
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	998325	998642	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	3847	4164	GCA_003351605_1_1_942	GCA_003351605_1_1_942	-	1804746	.	PDB:1Z19_B	Integrase	MATIIKNGKRWRAQVRKFGVSKSATFLTQADAKKWAEMLEKQLESGKYNEIPDITLDELIDKYLKEVTVTKQGKREERIRLLRLSRTPLAAISLQEIGKAHFREW*	common_virus_hmm	common_virus	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0007	shell	direct	high	317	0.997	GCA_003351605.1_00981
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	999173	999976	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	4695	5498	GCA_003351605_1_1_943	GCA_003351605_1_1_943	+	1804746	.	PRK05826	pyruvate kinase; Provisional	MSRRLRRTKIVCTMGPSTDRDNNLEKIIAAGANVVRMNFSHGTPDDHIGRAERVRSIAKKLGKTVAILGDLQGPKIRVSTFKDGKIFLNVGDKFILDAELPKGEGTQESVGLDYKTLPQDVVPGDILLLDDGRVQLKVLSTDGAKVFTEVTVGGPLSNNKGINKLGGGLSADALTEKDKADIITAARIGVDFLAVSFPRSSADLNYARELAQQAGLNAKIVAKVERAETVANDEAMDDIILASDVIMVARGDLGVEIGDLISRRDTI*	mmseqs_cdd	nonviral_gene	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0008	persistent	direct	high	803	0.999	GCA_003351605.1_00984
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	1000060	1000629	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	5582	6151	GCA_003351605_1_1_944	GCA_003351605_1_1_944	+	1804746	.	cd00288	Pyruvate kinase (PK):  Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors.  Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state.  PK exists as several different isozymes, depending on organism and tissue type.  In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung.  PK forms a homotetramer, with each subunit containing three domains.  The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.	MISNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMASVCLGAEKMPSINVSRHRMDKEFETIEESVAMSAMYAANHMKGVAAIVTLSSTGRTPLLMSRISSGLPIFALSRNQETLNLCALYRGVTPIYHGEESRTEAGAKAALQSLKEKGYLSTGDLVLVTQGGQGATQTNVCRTLIVE*	mmseqs_cdd	nonviral_gene	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0009	persistent	direct	high	570	1.0	GCA_003351605.1_00985
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	CDS	1000771	1002177	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	6293	7699	GCA_003351605_1_1_945	GCA_003351605_1_1_945	+	1804746	.	PDB:3BGW_F	DNAB-Like-Replicative-Helicase	MASQPQIKSSDKKTAQVSIPPHSIEAEQAVLGGIMLSNQHWDGIAERVIADDFYTFQHRLIFTEMEHLMRNQSPIDLITLDQALRSRGVSDEVGGFAYLAELSNNTPNAINILAYADIVREKAILRELISVGNRIAENSYSPKGQDIKLILDEAEREVFAIAEKRTTSSEGPQNVINVLESTIEKIDILSKLENHSGVTGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMIASLARVDQTKIRTGQNLDEIEWNKIASVVGMFKQKNNLFIDDSSGLTPTDVRSRARRVYRENGGLSMIMVDYLQLMRAPAFSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRTLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYNDNSEDKGVAEIIIGKQRNGPIGRVRLKFNGQFSRFDNLAEQREYRDDY*	rep_hall_hmm	common_virus	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_CDS_0010	persistent	direct	high	1406	0.999	GCA_003351605.1_00986
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	tRNA	860198	860283	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	193	278	tRNA-Leu	tRNA-Leu	+	1804746	.	tRNAscan-SE score: 61.6	Leu	NA	tRNAscan-SE	.	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote	cenote	tRNA	872814	872884	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C52	12809	12879	tRNA-Trp	tRNA-Trp	+	1804746	.	tRNAscan-SE score: 51.3	Trp	NA	tRNAscan-SE	.	C52	23988	860006	883994	GCA_003351605.1|CP031237.1@region_860007_883994@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote	cenote	tRNA	998871	998944	GCA_003351605.1	CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605.1_CP031237.1	GCA_003351605.1|CP031237.1	GCA_003351605_1_1	GCA_003351605_1_1@C60	4393	4466	tRNA-Val	tRNA-Val	-	1804746	.	tRNAscan-SE score: 70.7	Val	NA	tRNAscan-SE	.	C60	7699	994479	1002178	GCA_003351605.1|CP031237.1@region_994480_1002178@tool_cenote_tRNA_0001	.	.	.	.	.	.