core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1012822	1013898	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	1	1077	GCA_003351625_1_1_925	GCA_003351625_1_1_925	+	1822569	.	PRK11671	membrane-bound lytic murein transglycosylase MltC. 	MKKYLVLALLPLLYACSDSLNRGGMNYDESFAKDTQGLDILTGQFSHNIDRIWGVNELLVASRKDYVKYTDSFYTRSHVSFDEGNIVIETQQDLNRLHNAIVHTLLMGADAKGIDLFASGDVPISSRPFLLGQVVDHQGQQIANQVIASNFATYLIQNKLQTRRLQNGNTVQFVAIPMIANHVEVRAQKYLPLVRKAAERYGIDESLILGIMQTESSFNPYAISYANAIGLMQVVPHTAGRDVFAMKGKGGQPSTRYLYDPANNIDSGVSYLWILQNQYLDGITNPTSKRFAMISAYNSGAGAVLRVFDNDKDMAIYKINQMYPEQVYRILTTAHPSSQARNYLLKVDKAQKKFRVRR*	mmseqs_cdd	nonviral_gene	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0001	persistent	direct	high	1076	0.999	GCA_003351625.1_00962
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1014457	1014588	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	1636	1767	GCA_003351625_1_1_926	GCA_003351625_1_1_926	-	1822569	.	.	hypothetical protein	MPSKGLISLLQAVQHIKEIIPAITRSNPYKCTQGPYERFSLLI*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0002	cloud	direct	high	131	0.992	GCA_003351625.1_00965
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1015229	1016419	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	2408	3598	GCA_003351625_1_1_927	GCA_003351625_1_1_927	+	1822569	.	CDD:COG4653	Major-Capsid-protein	MLKKLIELRQQKAEKVAEMRAMLDKAEKENRSLDETESVDFDKLKDLVKQLSDEINKYETVADEERNLGAQSNPLETRSTKQFSNDELRHYIKTGELRNLTTANGEDGGYSVIPQLDKEVMKRLTDDSVMRQLCNVVRLPIGAKEYKKLVSAGGATVEHGTEGTARNGTASPKLHEVTIALNSIYAYPKTTQEILDFSSIDVLGWLTDEITETFTETEEVDLTSGDGNKKSKGLLTYERTTENDKVRPFGKLQKIEVAGVAKIEADTLIDAFYTLHSKYRKNAVWVMSSTIAAALQKLKNKNGDYIWRDGLTTDAPATLLGRPVYFLETMPIGGANQAVIAFGDFKRGYFIVDHETGVRTRPDNLTEPGFYKVHTDKYLGGGVVDSNAIKVIETTA*	hallmark_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0003	shell	direct	high	1190	0.999	GCA_003351625.1_00966
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1016464	1017030	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	3643	4209	GCA_003351625_1_1_928	GCA_003351625_1_1_928	+	1822569	.	CDD:COG3740	head-maturation-protease	MKKEFEIRSATISTDEENQKLVGYAVKWNSPSQVLYCDFVESFAPKAFSESLASGEDVRALFEHDYTKLLGRTSAGTLKLEEDSIGLRFELTPPNTTIGKDLLVSVARGDITGMSFGFRASQEEWDFDVEPCQRTVQKAELFEVTVTSIPAYPESSVEIAKRSMIAAKEKTQEHSTALLKQWLDVMEA*	hallmark_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0004	shell	direct	high	566	0.998	GCA_003351625.1_00967
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1017032	1018264	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	4211	5443	GCA_003351625_1_1_929	GCA_003351625_1_1_929	+	1822569	.	CDD:COG4695	Portal-protein	MWNPFRRKEQRSEPTSIEELLSYMGVNNTGAGEFVSPQTAESLPAVMNAVTVISEAVASMPCYLYALKEDGRERIYRHPVEYLLNEMPNRSQTPYQFKNTMMRHCLLNGNAYAVIEWNNKGEPISLTPYQPSAVNIFRKVTGEYIYQITDLNGVTKNYLQDEILHLRHSSVDGFMGRSPITVCRETVGLGLAQQRHGAAIMKNGLMASGLISTAEWLDDAKAQKAVKALERYKGAKNAGKTPILEGSMEYKQLGMTNQDAEWLASRTFTISDIARIYNISPIFLQDYSNSSYANFSEASRAFLSQTLRPWLTNFEQQLKDALMIDLGSNSNKRYLIEFDTSDLLRTSQSERFSSYDIAIKAGVMSPNEVRRREGLPPYEGGDEFSQAWKQTVEVKRGDEQEQGASNGSDA*	hallmark_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0005	shell	direct	high	1232	0.999	GCA_003351625.1_00968
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1018248	1018592	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	5427	5771	GCA_003351625_1_1_930	GCA_003351625_1_1_930	+	1822569	.	PDB:2KZ4_A	Head-tail-adaptor	MAVMLKAGKYNKVIGLQKQVNEPNDYGGIVSKWRTIANVRAAVEPLQGREFFSGAVPLGENIVRVRVRYGIEVDRTMRVKYGTRLLEITNIIDSKESHRELQLICKELLGNGTN*	hallmark_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0006	shell	direct	high	344	0.997	GCA_003351625.1_00969
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1018579	1018887	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	5758	6066	GCA_003351625_1_1_931	GCA_003351625_1_1_931	+	1822569	.	CDD:TIGR01560	uncharacterized-phage-protein-(possible-DNA-packaging)	MAQIELEEIKQHLNLDHDLDDTLLETYKVATLEVCQKHIGKTFGDEETENTVPFTPSIKVGCLMYIAYLYTNREAITDLANLKQAPMTISALWEVYREPCAY*	hallmark_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0007	shell	direct	high	308	0.997	GCA_003351625.1_00970
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1019081	1019266	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	6260	6445	GCA_003351625_1_1_932	GCA_003351625_1_1_932	+	1822569	.	PDB:5H0M_A	HNH-endonuclease	MCLEKGIYTPATVIDHIKPVENGQADPLFWVGSNHQSLCRDCHSYKTRVIDQRGFGAKKID*	common_virus_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0008	.	unmatched_CDS	none	0	0	.
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1019368	1019742	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	6547	6921	GCA_003351625_1_1_933	GCA_003351625_1_1_933	+	1822569	.	CDD:COG3747	Small-Terminase	MTAKKKNLHTPPSFLDPIAKSVWKERIPQLLERGDIQDADLIHLELYCVNYSLFRAAVEDIHKNGFSIVNSQGTQSRNPALSAKADAEKVMVKMSSLLGFDPVSRRKNPVEVDSTDMIDEILTM*	hallmark_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0009	shell	direct	high	374	0.997	GCA_003351625.1_00971
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1019750	1021417	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	6929	8596	GCA_003351625_1_1_934	GCA_003351625_1_1_934	+	1822569	.	CDD:COG4626	Large-Terminase	MAIWHEYAEKIQSGEIVACKKIKQAVARYFNDLNNPDYFFDQSAVEKFIAFSKLCPHVKGHLRGEPIILSDWQVFLFANILGFKRKDTGLRKYRSAYVQVARKNAKSTVAAVLANWFLVMEGGQQDIYTAAVSRDQARIVFDDARQMCLLSPLLKKRLNIQQHKLINPKNNSIMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGSNVISACKQHYDYCAQILEGNEQNDSLFVLIFELDEENEIDKQENWIKANPNIGKSIPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNWAQCERQYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPQGKKVRLVTRHYIPEFQLNNVANKNRAMYRNWVRSGWLIATEGDCIDYDKIRDDILKDAQRFNIKMIGFDVWNATHLRTQLQAAGLEVEPFPQTYQRFSPVAKSAEVLINRLMIEHNGDPVLAWALSNVVMETDANANIKPNKKKAANKIDPAIAFLMSFGTYQLEYGDLIFELSDEHRKIIDEFTGLDL*	hallmark_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0010	shell	direct	high	1667	0.999	GCA_003351625.1_00972
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1021738	1022025	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	8917	9204	GCA_003351625_1_1_935	GCA_003351625_1_1_935	+	1822569	.	.	hypothetical protein	MIRCKEAKQNLLLSAVKHYKKNNHTFTFISLYDNEEPYPIEEVIYALRCKCDAAKREIDSRPNSPNMEVLETIYHIAHKNLEDMKKAKSRIEQKA*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0011	cloud	direct	high	287	0.997	GCA_003351625.1_00973
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1022223	1022606	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	9402	9785	GCA_003351625_1_1_936	GCA_003351625_1_1_936	+	1822569	.	.	hypothetical protein	MIKSVLSAFGSFVFSALDFLLFLAILLFVGLLVFIFWPILKWLLLAFLIGAIAFFCYLIYKIKEKPKPLEQDETLSSWAEQELQRPIIQRILQKQEENKPFISGTITHIGNDGKETRLGNITINLKK*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0012	shell	direct	high	383	0.997	GCA_003351625.1_00974
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1022707	1023546	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	9886	10725	GCA_003351625_1_1_937	GCA_003351625_1_1_937	+	1822569	.	.	hypothetical protein	MKEKEDFFTDIRRTLGKKISSELSRLAYEIEELLSNLTLKEIKDTQAWIDETIDMYYQEELDNAIKNAMEFVEYEEDEDGYYSSYNPYLTMITKDEYGPDINLIMEDFNVETRDSDYDSSTLEWLLEINYRDTGLIDGIKNYQIMAIMALDYIDRFINGDSFFKDNSFNNDKQYQAFWIYIAAKDMKYSLEVETIKLDVQKEIKKKAADARHRENKRMKEMVINKWKSYKNQKLKEGKTPSKNAFAERIFKELQTANKKDSNVKAYSLKTIRTNWLQGI*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0013	cloud	direct	high	839	0.999	GCA_003351625.1_00975
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1023718	1023939	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	10897	11118	GCA_003351625_1_1_938	GCA_003351625_1_1_938	+	1822569	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MNEAQKLNLKLNPQQKLISGETACHIVGFGRTKLNELVKAKKFPQPIRFSQNFVRWDLEEVNQWIEEQKAARA*	mmseqs_cdd	nonviral_gene	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0014	cloud	direct	high	222	1.0	GCA_003351625.1_00976
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1024029	1024628	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	11208	11807	GCA_003351625_1_1_939	GCA_003351625_1_1_939	+	1822569	.	PF10554.9	Ash protein family	MNLIHKYYINNENFYNLNPLQSAVKFGIIFPQLEKVIASRGKLNLIKANDSTPQNRAFFVRNIRTPQEYADFVFNLNPIILSMVERNEQSLTGCLPLLAVFHLVTLYRPTVESLAVVPKNQIKDTAEMIYKFLCVNRTQSHFNLCVISLNSTTEEQARLSLSADYRFIAVVARINPQNDRTLAALPTLSTSAAMEVAHG*	hhsuite_tools	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0015	cloud	direct	high	599	0.998	GCA_003351625.1_00977
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1024621	1024869	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	11800	12048	GCA_003351625_1_1_940	GCA_003351625_1_1_940	+	1822569	.	.	hypothetical protein	MANRIIQVEQCQINLLKLQMDGLSQLESMLLALYINPDVFDEMDSFDIAYTIKGIKNLLSYIKVDMEERIAFIEGLQEESND*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0016	cloud	direct	high	248	0.996	GCA_003351625.1_00979
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1024862	1025062	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	12041	12241	GCA_003351625_1_1_941	GCA_003351625_1_1_941	+	1822569	.	.	hypothetical protein	MTEQVNLPYQLIFVYDDGSQFIAGKYGTLREALQAKIRCKHEIGQADICSRVLEVISVLKGEDNES*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0017	shell	direct	high	200	0.995	GCA_003351625.1_00980
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1025052	1025258	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	12231	12437	GCA_003351625_1_1_942	GCA_003351625_1_1_942	+	1822569	.	.	hypothetical protein	MKAKKIKAFKAPYTPTPEQLEKSYKRIKQFLAFAEDYLHSGHYKGLAASIEQIKKAATIRKVAQHETK*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0018	shell	direct	high	206	0.995	GCA_003351625.1_00981
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1025245	1025793	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	12424	12972	GCA_003351625_1_1_943	GCA_003351625_1_1_943	+	1822569	.	.	hypothetical protein	MKPSNPMQQLQQWKANNGKSNKLKNELVKSANQPNSGLVKNTQGNVGSETKNKYQGKLCANPLAFKCSQLTRQFKLILDSNRKCLEVYPDDFHHKIKFRDELTDLVVRLKTGGKLFNEMVKAQGAKLSSNNQETIRNFNQANDYLIHKFGEVIKQIEQLQVEYVNSVVLLKNEKNLIVSEGK*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0019	shell	direct	high	548	0.998	GCA_003351625.1_00982
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1025795	1026238	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	12974	13417	GCA_003351625_1_1_944	GCA_003351625_1_1_944	+	1822569	.	.	hypothetical protein	MDMNQKLDYSKLSALELKAIAMSYRNMLENKGETFHSSLPYLSGAIEVLAEELADCPAMNIDELKILHDELLMVNKHLLQMAPKPPSSNPEEIVATLTNDEIIDGLLKNSIALSLVKTFKYFQEVIADRINAIENGVIKGVNNGTIN*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0020	cloud	direct	high	443	0.998	GCA_003351625.1_00983
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1026222	1027772	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	13401	14951	GCA_003351625_1_1_945	GCA_003351625_1_1_945	+	1822569	.	PFAM:PF04735.11	DNA-helicase	MARLINAPHLADQIHEPYSDIFILAGRKAWQAWDNGKGEEWLLLCSLIHGLDSTIKPVILAEKQLENISSIRIVKEDQQSVKLIQYGELAQAEITAICQNLAKNSNAIDVKLLDAAAQTKEDLSAYIQRLRNDKETADLAEQLAPPEKLKEKDGTNKKSRAFQKWLNLDMALQRGCREIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIDRLIKTLKAQLPRMGEMSNDLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKHATDTPHFDKWLSFVSDGNKEKARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDERGLSGLENKTLILCPEQSKYAGDGSGLKSITGGDTVRVRYNYQDPFDVKITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITLEVGGIIRKVFDSFPDPSDAKKALKAQMESQEALEVKKLSDPLTDFFGISTRQNKQMGFLLVLQTWD*	rep_hall_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0021	shell	direct	high	1550	0.999	GCA_003351625.1_00984
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1027763	1027990	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	14942	15169	GCA_003351625_1_1_946	GCA_003351625_1_1_946	+	1822569	.	1KA8_A	putative P4-specific DNA primase (E.C.2.7.7.-)	MGLDKIRTHLYPAYLAYTKAMNIGELGLNNFVIGVEQALKQNGNKHDFIKRHTKTGRRTNIHFKDFDSFRNEMFS*	hhsuite_tools	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0022	shell	ambiguous	low	11	0.048	GCA_003351625.1_00984
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1028162	1029388	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	15341	16567	GCA_003351625_1_1_947	GCA_003351625_1_1_947	-	1822569	.	PDB:1Z19_B	Integrase	MARIVKPLSPTEIKNAKPKEKEYTLSDGEGLLLLILPSGSKSWRFNYARPLTGKRTKMALGGYPELSLADARAKREEYRALLAKGIDPQEEKIRIQQEYENRLKDTFHSVAESYFNGIYKEKAKNPETREKNWERLKNHIFPYIGDKHVSEIKVKELVSIYEKIADRSNTLKKIHQLVGAIMDHAITKGIIESHNCRLAVKNFYIKSSTPHPTIKLDELSKLFQDLENARIGKKTYLLICWSFLTALRPKEAVNAEWSEIDFDNKLWNIPKEKMKGQADKKRPHTVPLSSQAIQLLEVMKLFSENSSFVFAGRSSKNQPMNKATVNVALKRIGYKDKLTAHGIRAFIKTFLASHKVERNVSETILSHLLEGGDDLENTYNRYNYLEERKPIMQLIGDYCESCGMNLNL*	common_virus_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0023	shell	direct	high	1226	0.999	GCA_003351625.1_00985
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1029489	1029761	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	16668	16940	GCA_003351625_1_1_948	GCA_003351625_1_1_948	+	1822569	.	.	hypothetical protein	MRGESAINPCETWIKQNPAISFAGLCLVKWCSGRDLNSHDLWSLPPQDSVSTNSTTRALIFYANPILLWDVAIFIVFRWSCLLLNLLGSL*	.	hypothetical_protein	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0024	persistent	ambiguous	low	74	0.271	GCA_003351625.1_00987
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1029687	1030025	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	16866	17204	GCA_003351625_1_1_949	GCA_003351625_1_1_949	-	1822569	.	COG1314	Preprotein translocase subunit SecG [Intracellular trafficking, secretion, and vesicular transport]. 	MYQVLLFIYVVVAIALIGFILVQQGKGANAGASFGGGASGTMFGSAGAGNFLTRTSAILATAFFVIALVLGNMNSHKGNIQKGAFDDLSQAAEQVQQQAAPAKDNKNSDIPQ*	mmseqs_cdd	nonviral_gene	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0025	persistent	direct	high	338	0.997	GCA_003351625.1_00987
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1030134	1032089	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	17313	19268	GCA_003351625_1_1_950	GCA_003351625_1_1_950	-	1822569	.	PDB:5D5H_A	DNA-topoisomerase-1	MRLFIAEKPSLARAIADVLPKPHQRGDGFIKCGDNDVVTWCVGHLLEQAEPDAYDPKFKQWRLEHLPIIPEKWQLLPRKEVKKQLSVVEKLIHQADTLINAGDPDREGQLLVDEVFSYANLSAEKRDKILRCLISDLNPSAVEKAVKKLQSNRNFIPLATSALARARADWLYGINMTRAYTIRGRQTGYDGVLSVGRVQTPVLGLIVRRDLEIEHFQPKDFFEVLAWINPENKEEKTQEKSTALFSALWQPSKACEDYQDDDGRVLSKGLAENVVKRITNQPAEVTEYKDVREKETAPLPYSLSALQIDAAKRFGMSAQAVLDTCQRLYETHRLITYPRSDCRYLPEEHFAERHNVLNAISTHCEAYQRLPNVISTEQKNRCWNDKKVEAHHAIIPTAKNRPVNLTQEERNIYNLIARQYLMQFCPDAEYRKSKITLNISGGTFIAQARNLQTAGWKELLGKEDETENQEPLLPIVKKGQILHCERGEVMSKKTQPPKPFTDATLLSAMTGIARFVQDKDLKKILRETDGLGTEATRAGIIELLFKRGFLTKKGRNIHSTETGRILIQALPDIATQPDMTAHWESQLTDISQKQATYQQFMHNLNQMLPDLVRFVDLNALRQLSRIKMIKSDRAKPKSAVKKSSKSNGQTD*	common_virus_hmm	common_virus	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0026	persistent	direct	high	1955	0.999	GCA_003351625.1_00988
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1032105	1032707	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	19284	19886	GCA_003351625_1_1_951	GCA_003351625_1_1_951	-	1822569	.	COG0353	Recombinational DNA repair protein RecR [Replication, recombination and repair]. 	MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNSGLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEMCRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID*	mmseqs_cdd	nonviral_gene	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0027	persistent	direct	high	602	0.998	GCA_003351625.1_00989
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	CDS	1032770	1033099	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	19949	20278	GCA_003351625_1_1_952	GCA_003351625_1_1_952	-	1822569	.	TIGR00103	DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium. [Unknown function, General]	MFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGMKFPF*	mmseqs_cdd	nonviral_gene	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_CDS_0028	persistent	direct	high	329	0.997	GCA_003351625.1_00990
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	tRNA	1014135	1014210	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	1314	1389	tRNA-Phe	tRNA-Phe	+	1822569	.	tRNAscan-SE score: 76.9	Phe	NA	tRNAscan-SE	.	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	tRNA	1014213	1014288	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	1392	1467	tRNA-Asn	tRNA-Asn	+	1822569	.	tRNAscan-SE score: 72.6	Asn	NA	tRNAscan-SE	.	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote	cenote	tRNA	1029579	1029661	GCA_003351625.1	CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625.1_CP031238.1	GCA_003351625.1|CP031238.1	GCA_003351625_1_1	GCA_003351625_1_1@C62	16758	16840	tRNA-Leu	tRNA-Leu	-	1822569	.	tRNAscan-SE score: 57.5	Leu	NA	tRNAscan-SE	.	C62	20278	1012822	1033100	GCA_003351625.1|CP031238.1@region_1012823_1033100@tool_cenote_tRNA_0003	.	.	.	.	.	.