core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1228297	1229145	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	1	849	GCA_003367335_1_1_1140	GCA_003367335_1_1_1140	-	5421383	.	.	hypothetical protein	MRCRYAGNMNGVLVILIVLVIAAIAFVVFNSSQANDRKAAESLSDAKADARRVIERLGGQVLNITGNDDASKQAMADASERYTAASSQIDQATTAKQAELAKESAIEGLYYVRAARTAMGMDPGPELESLAGQRTAGAVTEDRRVEFEGRQIEASPTPSERTPNYYPGGRVAGRPVPAGWYSEPWWKPALVAGAWGLGSAMLFSAMFSGMSGVGYDAQAFESGYGDGFQDGLAQGELGDGGGMDQSGWDGGDQGGWDSGGWDSGGWDGGGDFGGGDFGGFDF*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0001	persistent	direct	high	848	0.999	GCA_003367335.1_01176
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1229201	1230406	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	905	2110	GCA_003367335_1_1_1141	GCA_003367335_1_1_1141	-	5421383	.	pfam00144	Beta-lactamase. This family appears to be distantly related to pfam00905 and pfam00768 D-alanyl-D-alanine carboxypeptidase.	MHRSPVVSPTVSVNGICVQDFTGVRDAFERNFSERGDIGAAVAVWVDGDLVVNLWGGSADAAGTRPWRSDTLASIYSGSKGLTSTCIHLLADRGELDLDAPVARYWPEFGQAGKENITVAMVLAHRSGVIGPRHRLRPEQTLDWDGVCARIAGSPPWWEPGTAQGYHMVTFGFILGELVRRVTGRTLGRYLRTEIAEPLGIDVHVGLPAAEHHRCAEMINKPHIRDVLAGGGAPGQPARLDEHPMAGLAVAMGFVPDDELGSTDIDSWRAAEFPGTNSHVSAHGLATFYNALAQEKLLSRELMERVRVSQGGFDTDVVLGARVADHGWGLGYMLNQRGVAGPNTAIFGHGGSGGSFAFVDLEHRIGYSYVMNYFDATKCNADPRTLALSDEVYIALGVKKA*	mmseqs_cdd	common_virus	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0002	persistent	direct	high	1205	0.999	GCA_003367335.1_01177
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1230633	1231064	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	2337	2768	GCA_003367335_1_1_1142	GCA_003367335_1_1_1142	+	5421383	.	.	hypothetical protein	MGKTAVAACGVAGAVLIAGCGGSTTGVATAPDDVAPYTTSTPKRTTTKTPSTRTPSTGSPTPGVSQQALDEVRAAGIDGPDDAIADQLSLACIMGESRFNDSVQDVVDVLIQMGSQLRPDALTTIVTVAVKYECPELAAKLDG*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0003	persistent	direct	high	431	0.998	GCA_003367335.1_01178
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1231555	1231914	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	3259	3618	GCA_003367335_1_1_1143	GCA_003367335_1_1_1143	+	5421383	.	.	hypothetical protein	MQELGDVGPTAPVGSSDDDPASVEPEIEDHERPTEVRWRIENPRENRYVLRNIGTETAEGVEVDASQAGPVNRNLPRDTTIRPNEGHDMLLMPTWGHPLPNQLYVRWSGHPEWTAVPIT*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0004	cloud	direct	high	360	1.0	GCA_003367335.1_01179
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1231997	1232254	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	3701	3958	GCA_003367335_1_1_1144	GCA_003367335_1_1_1144	+	5421383	.	4C26_A	HICA	MASVEKIEAKMRESANNVAYNDLLKVCTHHFGTPRQQNSSHAVFKTPWPGDPRVNIQNKNGQAKPYQVKQVLEAIDKLNTITGNE*	hhsuite_tools	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0005	cloud	direct	high	257	0.996	GCA_003367335.1_01180
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1232268	1232903	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	3972	4607	GCA_003367335_1_1_1145	GCA_003367335_1_1_1145	+	5421383	.	COG4226	Predicted nuclease of the RNAse H fold, HicB family  [General function prediction only]. 	MSNHYTYRAEWSAEDDEYVGLVAEFPSLSWLAPTAAEAVAGAAELVDGILADMDKSGETPPKPLTERRYSGNLSFRTSPAQHRKLAIEAAEQGVSVNQLLIYKLASKTAVAPAAVADMSSVIAEASRACTALPVIAGIQSKVIEQARAAIPDSVTASTVDYLIENPAMKELMAANVTAWVQSVSEKLREAGKEEEVATLLIIPTGKSVHTG*	mmseqs_cdd	nonviral_gene	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0006	cloud	direct	high	635	0.998	GCA_003367335.1_01181
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1232891	1233157	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	4595	4861	GCA_003367335_1_1_1146	GCA_003367335_1_1_1146	-	5421383	.	.	hypothetical protein	MGKHSRHRAAAGLDPLVALPGGDQAFELVDDGPVLAGTLRQLAGRIIDCNDWADIRLNAQIMDTPEARVQAPNAAATLRELFDRYHPV*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0007	cloud	direct	high	266	0.996	GCA_003367335.1_01182
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1233141	1233641	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	4845	5345	GCA_003367335_1_1_1147	GCA_003367335_1_1_1147	-	5421383	.	.	hypothetical protein	MAKAHNRTTYNQGCRCDVCVQANSDYRKQRRMRKNGDVAERKPKRLAVVKNVQPDVHTKVHISGEPTPDSPEPAEWSVEAEVRAQLAELSATTTRRGEVAAAIAMARLLDNPRAIAQHPAATGRLVEIIERLRKGSDRKTGKLAAVRKMTRGTDGAPNVDGHGQAQ*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0008	cloud	direct	high	500	0.998	GCA_003367335.1_01183
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1233883	1234185	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	5587	5889	GCA_003367335_1_1_1148	GCA_003367335_1_1_1148	-	5421383	.	.	hypothetical protein	MNCEPCTLHSAGEAQHADRIEQIRAQRLLLAVLNGVDDVAELIAAELRTCQPCSGRLASIYLGLSIATVVHIHGSRDAAARAIEHTLAEDLDAHTRRNGS*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0009	cloud	direct	high	302	0.997	GCA_003367335.1_01184
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1234198	1237737	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	5902	9441	GCA_003367335_1_1_1149	GCA_003367335_1_1_1149	-	5421383	.	Uniprot:A0A088F8S6_9CAUD	tail-tape-measure-protein-	MAIHVDVFTRLNERRVRQDARTLVDEFDSAGERAGKNFGENLSAGIERSAPRAERAAARMERSTDRVADSLGRVNVEQAKYDELSKKSTASDRQKIQQAEALAKAHRAYAASVRDAARATQEHLRIQRSAESSSSIGGDGPASSLRNTTTAMAALGGAARSPAAIAAVAPVLLQIGSAAVAATGSLLVLPGVLGAVGAAFGSLKLATSGFFDAIENVNDPEKFAESLRSLSPNAQQAALSIQSLMPALTELKTATQDALFADIGPGLERLTTAMLPQIQQLTTTVAASFNQMFDGVSNTLLSNPVLTGQITQNFGQAFQNLTPAAASLTQALTSLIAVGSTFLPDLARGASEAAAGFADMIEESARSGELQATIRDGITIVGMLIDATKSAGEMFGALATDGVAAMADIKLSVEAVSTVIRIASGDLEAWGDVFPTIGKMAAGTFADIGNSIDTHVLGPLRWVVDTLNELPGVSLPEIPDFQFTNEGFSARSSSPIPGTNTPGFAGTPALGGEDNASRRRRGLAPVETGEEAARRRVAGLPPAGRFLPSGQPGGWWPGLGVNGQPGGGFYTIGQEGYRAGMAPDWRTAGSGGGSGPRLPDAPVLPYEPRTSTAPTAALFSAENSLYDAQHTLAEKRARLTQLESTSTATAEDVQDARNDVREAEQAEHEAQLRLNEARMSATEKGIKQLNSASDQLGDVGAKLDRDFGLSRGLPGLAENLIKFVASLAAAGPMAQLGAIAAASPSQGGYGAMGILGAQGAFGDRFTGIDPQRMYGGGYGPSGIGPAAIGGGMGYGAYPGDAALLANVPSGRYTQEERGDLTQGLADCSSAVEDLVNMLDGRPTGGASMTTYNADEWLQSRGFLPGMGGPGDMRVGFNPEHMQATLPGGTPFNWGSKEAAARGGVGGTGAYDPSFTSHYYRPATGGVPSLTPRPALAPSPSLSTSGVPSSAALNSDPALTNPALTPDRPASGPAALPPLGSVPSSGGPLSTGMPQSPFLGAPAGPGAGEGAGATPIGGLAPPGGSGGGGAVGLTGGGAIGLGMQAGGMALDVMAPGAGQAAQTVVKLGSRAIEFGSQVGGIAASGAMETLLPTGGSELANNNWATKLAGGFAGMGPALPNTAGGKSAAQLAGQPGQNDQNAPNETNNNYDVKIDAAARDSGGLMRDFEYHTTAAAAAPGM*	hallmark_hmm	common_virus	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0010	cloud	direct	high	3539	1.0	GCA_003367335.1_01185
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1237836	1239317	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	9540	11021	GCA_003367335_1_1_1150	GCA_003367335_1_1_1150	-	5421383	.	PFAM:PF06673.10	Major-Capsid-protein	MTIRLETRPDALERQIADARKEARTLLDRAGGADLTGAEAERFDELTELIEAGNRQLEGIDRNFAAIRDAASDLRFFPGSTGGGDSTRDDGDQRGRAGGARLRHRDPWDTSHLTRMGVFGRDEESIGKELHERALDAVEDMPQATDKVREAATRFIERDDPDLGSPTAQLVLATTSPQYMRSFIKIIRAKGNMAALRAEDQEMLARAMSLVDLNGGFAVPFQLDPSVILTADGSVNQVREIARVVQATGDVWHGLSSTGVFGSWDGEGEEVSDDSPTLEQPAIPVHKYQAFVPLSHELQMDAPGLADDIARMLADDKDTKESIAHVTGTGVGQPTGIITALAGTASVRPAITADTLTAQDVYDLDSALPQRYAANGSWLAHRKTYNALRQFDQGGGNALWGQLADGRKSELLGRPNYIAEAMKSTIAAGQTNHMLVFGNFRNYVIADRLGATMSYIPHLFGPNGRPTGKSGWHAWFRSGADSVNDAAFRVLDC*	hallmark_hmm	common_virus	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0011	cloud	direct	high	1481	0.999	GCA_003367335.1_01186
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1239325	1239993	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	11029	11697	GCA_003367335_1_1_1151	GCA_003367335_1_1_1151	-	5421383	.	CDD:COG3740	head-maturation-protease	MRTLVRNNLCRSLPFTAVRTAGDTGDADNDDGRNFQGYGAMFNTPTRIDSWEGTFDEQIAPGAFRKSLRELAPKFQFDHGRHSLFGSLPCGVITDIHEDERGLYVAARMAAAALWEPLREAIASGAVDGMSFRFSVVREEWRDTKGKLVQPEDVKRILYNGEQPERAPLLRTLKEVRMAEVGPVVWPAYSSTSATLRAHQSGSTITSSTARRRLKLLSLERN*	hallmark_hmm	common_virus	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0012	cloud	direct	high	668	0.999	GCA_003367335.1_01187
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1239990	1240394	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	11694	12098	GCA_003367335_1_1_1152	GCA_003367335_1_1_1152	-	5421383	.	.	hypothetical protein	MSGLLVPYDHTAIRGCFARTIAERATKVRLLADLGKARPVVLGEGAQLRETDEGLHATFTVPEALSAALDTATDWPVTVRTQRVGASEFKLIDIRLGLPGQSPARSQPAASTTERRISADTARRRLALLDLERA*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0013	cloud	direct	high	404	0.998	GCA_003367335.1_01188
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1240595	1241074	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	12299	12778	GCA_003367335_1_1_1153	GCA_003367335_1_1_1153	-	5421383	.	.	hypothetical protein	MPHDPQALTHADFQRAATLIKFAAEIDRAGINFVFNEAGRENRSAQLLLATIDGYRVITRELRSESALPAVDEMIRGAVTTAPDPDMRLAAAAVVARADSDTDALNAVMIKANKSGRPAELVAALMGMYATLLPELVTDHCTANLATWPARIAGHSGGA*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0014	cloud	direct	high	479	0.998	GCA_003367335.1_01189
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1241615	1241860	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	13319	13564	GCA_003367335_1_1_1154	GCA_003367335_1_1_1154	-	5421383	.	.	hypothetical protein	MSTTTICRRAYAGALTDACPQCKAPAGEYCTRLDDFGHRHLRRIPCLHRIHPSLVDVDEHHDEPVDFTEPRRPPNEGGRLP*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0015	cloud	direct	high	245	0.996	GCA_003367335.1_01190
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1241857	1242594	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	13561	14298	GCA_003367335_1_1_1155	GCA_003367335_1_1_1155	-	5421383	.	PFAM:PF06970.10	replication-initiation-O-like	MSGQLVGEVIAASDSLRARGLSERGFHALIAIAEKAGTESRQGSVRWDHIRAVLYGASQRTAERAIADLKNAGLIRVVRVGFNNNHGRAAAPIYEIQQTTDSATQVSASLADDTDTQMAESTRTDADTQMAESPDTHTDTHEANARYRQNGDRYRQNGDRYRHPDVVLDVSIDGSIDEKKGLRFRGTSPGGGSCAPTAGGYDIADMTIECPHCHAPAHHPCKQETGEPKQLPCMRRWRSERVAAI*	phrogs_hmm	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0016	cloud	direct	high	737	0.999	GCA_003367335.1_01191
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1242647	1243714	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	14351	15418	GCA_003367335_1_1_1156	GCA_003367335_1_1_1156	-	5421383	.	PDB:1A0P_A	Recombinase-XerD	MSAKETPEVSRVRQRAYRLNLRLIKSGEAVQLRDQDGTIKHSGSLASADAYMERIRSWQRGGSVPKSVPVEWVPLIDGYLKEQDAAGFSQSTVKLRREQLGNMAREIGVTPDNATRQTLTAWLARHREWKPETRRSMFSTLKSFCIWASDNGWFATNPAAELPKVRLPPPAARPAPDDIWHTSIARARGNPRVTLLLRLASEVGLRRAEAARVSTDDLMGGLGRAQLLVHGKGGKKRVVPISDSLAAAIAAGAAGHTTGAPSTGWLFPGSKPDAHLTPKQVGDLIRTVMPEGWSMHTLRHRFATRAYRGSRNIRAVQTLLGHASVATTERYTAVDDDEVRAAMLSASDWGDVSDS*	common_virus_hmm	common_virus	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0017	cloud	direct	high	1067	0.999	GCA_003367335.1_01192
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1243711	1244337	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	15415	16041	GCA_003367335_1_1_1157	GCA_003367335_1_1_1157	-	5421383	.	.	hypothetical protein	MMTQSTNTDHDLLAEVSTPDGVTAGPWRTDSQGHLERDLSDGRIQRGNGDIAEAAAGDACRIRVGTVTSWHEVATHLTPTQNTFLRDSESRGAEPEDLAEYARGLAEQNVRDAAVFGDLPVPPDATAVYTSNQMPDGRYSRDFVGARRRIGLLCLSVEGTQFDDGAVRRRLHIGFDSTDGSEPEFDSHQVHQLILVLGQLASAIEQTQ*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0018	cloud	direct	high	624	0.995	GCA_003367335.1_01193
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1244477	1244701	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	16181	16405	GCA_003367335_1_1_1158	GCA_003367335_1_1_1158	-	5421383	.	PFAM:PF10013.8	excisionase-and-transcriptional-regulator	MKAIAEPQPDDDDRLSQLWPVEAVMARLSVGKSTVFALITSGELRSVKVGRRRLISEAAIREFIQKVDNGGSAA*	phrogs_hmm	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0019	cloud	direct	high	224	0.996	GCA_003367335.1_01194
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1245394	1246563	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	17098	18267	GCA_003367335_1_1_1159	GCA_003367335_1_1_1159	+	5421383	.	PDB:1Z19_B	Integrase	MPRQRMAPGEHGKITVGRRGELFCATTYVRLHNGKLREREASSRKSAEDARRELKRRIQAELAAGQPTGAINQRTTLTELFEVWLPAKVAENGIGERTATLYRDTWRLHGDGQLGALRVGELSTSRADAYLKALLPAPATYMRVILSGMYSLAVRFDVIAHNPIRETRTNKAERKPARALTTMEFERVRAAVAAFCNRKGPGPRRGRMLPAFVELLAATGARPGEVLAIRWEDVDLLGTPPTVTVTGTVVDSGRVAGKPLHRQDSRKGGAPAHTVSLPTFGVEVLTELYAVTGPEGTVLANRDGGLVALTNIRSALREALADHEDLRWVTPHSFRRTVATVVRDGLGVEAAQRQLSHTQLATTEGHYVERVTVGPDTRAVLESWASNQP*	common_virus_hmm	common_virus	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0020	cloud	direct	moderate	1154	0.986	GCA_003367335.1_01195
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1246966	1248471	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	18670	20175	GCA_003367335_1_1_1160	GCA_003367335_1_1_1160	+	5421383	.	COG0544	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]. 	MKSTVEKLSPTRVRINVEVPFTELEPDFDRAFKQLAGQVRLPGFRPGKAPRKLLEARIGRGAVLEQVVNDALPSRYSEAVTSAEIQPLGQPDIEVTKLEDNEELVFTAEVDIRPEIELPDLTALKITVDPIEIADDEVDTELQNLRARFGTLTGVERAAADGDFVSIDLSATVDGTEVPEAATEGLSHEIGSGQLIDGLDEAIIGLKTGESKVFTTTLAAGPHAGQEAEVTVTVKSVKERELPEADDEFAQLASEFDTIDELKESLVEQVKRVKRIQQAEQIRDKALEVLLADVEVPLPEAIVQAQIDDTLHNAIHGLDHDEDKFNESLTEQGSSREEFDTNTRNEAEKAVKTQLLMDAVADKLDIQVGQADLTERLVLMSRQYGIEPQQLLQVLQQNNQLPAMFADVRRGLTIAAVVQGATVTDSEGNVVDTAEFFGPAGGEETAEVEVAEDVAVEAPAADAESESEAAADEDAAAEKAEKKDKKKAKKKSDKKSDDSSE*	mmseqs_cdd	nonviral_gene	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0021	persistent	direct	high	1505	0.999	GCA_003367335.1_01198
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1248582	1249181	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	20286	20885	GCA_003367335_1_1_1161	GCA_003367335_1_1_1161	+	5421383	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MRGGTSGLNLIDSVYERLLAERIIFLGTQVDDDIANRLCAQILLLAAEDPTKDIHLYINSPGGSVTAGMAIYDTMVLAPCDVATYAMGLAASMGQFLLAAGTKGKRYALPHARIMMHQPSAGIGGSAADIAIQAEQFALTKKEMNRLNAQFTGQSLERVETDADRDRWFTSSEALEYGFVDHIITSVSVNGEGPGAGIK*	common_virus_hmm	common_virus	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0022	persistent	direct	high	600	1.0	GCA_003367335.1_01199
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1249178	1249804	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	20882	21508	GCA_003367335_1_1_1162	GCA_003367335_1_1_1162	+	5421383	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MNPMQSRYILPSFIEHSSFGVKESNPYNKLFEERIIFLGVQVDDASANDIMAQLLVLESLDPDRDITMYINSPGGSFTSLMAIYDTMQYVRADIQTVCLGQAASAAAVLLAAGTPGKRLALPNARVLIHQPAVGGAIQGQVSDLEIQAAEIERMRSLMDSTLARHTGKDPAVIRKDTDRDKILTAAEAKDYGIIDTVLEYRKLSAQNA*	common_virus_hmm	common_virus	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0023	persistent	direct	high	626	0.998	GCA_003367335.1_01200
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	CDS	1249958	1250260	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	21662	21964	GCA_003367335_1_1_1163	GCA_003367335_1_1_1163	+	5421383	.	.	hypothetical protein	MKSAHKLAWSMAGIAAAMGMTLANPAVGQAEEPVCPVGTYWNPAVVECLPYGVNPVVGPAGPVGVGGVVGPVGVGPVGPGPVGPGPVGPGPVGPGGLGPR*	.	hypothetical_protein	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_CDS_0024	persistent	direct	high	302	0.997	GCA_003367335.1_01201
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	tRNA	1246852	1246925	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	18556	18629	tRNA-Pro	tRNA-Pro	+	5421383	.	tRNAscan-SE score: 81.4	Pro	NA	tRNAscan-SE	.	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_tRNA_0002	.	.	.	.	.	.
GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote	cenote	tRNA	1246648	1246721	GCA_003367335.1	CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335.1_CP031414.1	GCA_003367335.1|CP031414.1	GCA_003367335_1_1	GCA_003367335_1_1@C57	18352	18425	tRNA-Gly	tRNA-Gly	-	5421383	.	tRNAscan-SE score: 74.7	Gly	NA	tRNAscan-SE	.	C57	21964	1228297	1250261	GCA_003367335.1|CP031414.1@region_1228298_1250261@tool_cenote_tRNA_0001	.	.	.	.	.	.