core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	215709	216554	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	1	846	GCA_003490865_1_1_217	GCA_003490865_1_1_217	+	363854	.	pfam04378	Ribosomal RNA large subunit methyltransferase D, RlmJ. RlmJ is ribosomal RNA large subunit methyltransferase J is required for full methylation of 23S ribosomal RNA (rRNA) during ribosome biogenesis. The ribosomal RNA of E. coli carries 24 residues that require methylation, and this methyltransferase is the last to be described, that modifies A2030. RlmJ displays a variant of the Rossmann-like methyltransferase (MTase) fold with an inserted helical subdomain. On binding cofactor and substrate a large shift of the N-terminal motif X tail is induced in order to make it cover the cofactor-binding site and to trigger active-site changes in motifs IV and VIII.	MLSYRHSFHAGNHADVLKHIVLMLILENLKLKEKGFFYLDTHSGVGRYRLSSNESEKTGEYKEGIGRLWDQTDLPEDIARYVKMIKKLNYGGKELRYYAGSPLIAAELLRSQDRALLTELHPSDYPILRNNFSDDKNVTVKCDNGFQQVKATLPPKERRGLVLIDPPYELKDDYDLVVKAIEEGYKRFATGTYAIWYPVVLRQQTKRIFKGLEATGIRKILKIELSIRPDSDQRGMTASGMVVINPPWTLETQMKEILPYLTKTLVPEGTGSWTVEWITPE*	mmseqs_cdd	nonviral_gene	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0001	persistent	direct	high	845	0.999	GCA_003490865.1_00227
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	216707	217036	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	999	1328	GCA_003490865_1_1_218	GCA_003490865_1_1_218	+	363854	.	TIGR00103	DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium. [Unknown function, General]	MFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGMKFPF*	mmseqs_cdd	nonviral_gene	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0002	persistent	direct	high	329	0.997	GCA_003490865.1_00228
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	217169	217771	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	1461	2063	GCA_003490865_1_1_219	GCA_003490865_1_1_219	+	363854	.	COG0353	Recombinational DNA repair protein RecR [Replication, recombination and repair]. 	MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNSGLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEMCRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID*	mmseqs_cdd	nonviral_gene	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0003	persistent	direct	high	602	0.998	GCA_003490865.1_00229
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	217787	219742	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	2079	4034	GCA_003490865_1_1_220	GCA_003490865_1_1_220	+	363854	.	PDB:5D5H_A	DNA-topoisomerase-1	MRLFIAEKPSLARAIADVLPKPHQRGDGFIKCGDNDVVTWCVGHLLEQAEPDAYDPKFKQWRLEHLPIIPEKWQLLPRKEVKKQLSVVEKLIHQADTLVNAGDPDREGQLLVDEVFSYANLSAEKRDKILRCLISDLNPSAVEKAVKKLQPNRNFIPLATSALARARADWLYGINMTRAYTIRGRQTGYDGVLSVGRVQTPVLGLIVRRDLEIEHFQPKDFFEVQAWVNPESKEEKTPEKSTALFSALWQPSKACEDYQDDDGRVLSKGLAENVVKRITNQPAEVTEYKDVREKETAPLPYSLSALQIDAAKRFGMSAQAVLDTCQRLYETHRLITYPRSDCRYLPEEHFAERHNVLNAISTHCEAYQRLPNVISTEQRNRCWNDKKVEAHHAIIPTAKNRPVNLTQEERNIYSLIARQYLMQFCPDAEYRKSKITLNIAGGTFIAQARNLQTAGWKELLGKEDNTENQEPLLPIVKKGQILHCERGEVMSKKTQPPKPFTDATLLSAMTGIARFVQDKELKKILRETDGLGTEATRAGIIELLFKRSFLTKKGRNIHSTETGRILIQALPDIATQPDMTAHWESQLTDISQKQATYQQFMHNLNQMLPDLVRFVDLNALRQLSRIKMIKSDRAKPKSAVKKSSKSNGETD*	common_virus_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0004	persistent	direct	high	1955	0.999	GCA_003490865.1_00230
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	219851	220192	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	4143	4484	GCA_003490865_1_1_221	GCA_003490865_1_1_221	+	363854	.	COG1314	Preprotein translocase subunit SecG [Intracellular trafficking, secretion, and vesicular transport]. 	MYQVLLFIYVVVAIALIGFILVQQGKGANAGASFGGGASGTMFGSAGAGNFLTRTSAILATAFFVIALVLGNMNSHKGNVQKGTFDDLSQAAEQVQQQQAAPAKDNKNSDIPQ*	mmseqs_cdd	nonviral_gene	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0005	persistent	direct	high	341	0.997	GCA_003490865.1_00231
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	220640	221866	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	4932	6158	GCA_003490865_1_1_222	GCA_003490865_1_1_222	+	363854	.	PDB:1Z19_B	Integrase	MARIVKPLSPTEIKNAKPKEKEYTLSDGEGLLLLILPSGSKSWRFNYARPLTGKRTKMALGGYPELSLSDARAKREEYRVLLAKGIDPQEEKIRIQQEYENRLKDTFHSVAESYFNGIYKEKAKNPETREKNWERLKNHIFPYIGDKHVSEIKVKELVSIYEKIADRSNTLKKIHQLVGAIMDHAITKGIIESHNCRLAVKNFYIKSSTPHPTIKLDELSKLFQDLENARIGKKTYLLICWSFLTALRPKEAVNAEWSEIDFDNKLWNIPKEKMKGQADKKRPHTVPLSSQAIQLLEVMKLFSENSSFVFAGRSSKNQPMNKATVNVALKHIGYKDKLTAHGIRAFIKTFLASHKVERNVSETILSHLLEGGDDLENTYNRYNYLEERKPVMQLIGDYCESCGMNLNL*	common_virus_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0006	cloud	direct	high	1226	0.999	GCA_003490865.1_00233
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	222038	223807	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	6330	8099	GCA_003490865_1_1_223	GCA_003490865_1_1_223	-	363854	.	PFAM:PF04735.11	DNA-helicase	MAKLINAPHLADQIHEPYSDIFILAGRKAWQALDNGKGQEWLLLCSLIHGLDRNIKPVILAEKQLENISSIRIVKEDQQSVKLVQYGELAQAEITAICQNLAKNSDAIDVKLLDAAAQTKEDLSAYIQRLRNDKETADLAEQLAPPEKLKEKDGTNKKSRAFQKWLNLDMALQRGCREIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIERLIKTLKAQLPRMGEMSNDLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKQATDTPLFDKWLSFVSDGNKDKARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDERGLSGLENKTLILCPEQSKYAGDGSGLKSITGGDTVRVRYNYQDPFDVKITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITLEVGGIIRKVFDSFHDPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGVTNMGLDKIRTHLYPAYLAYTKAMNIGELGLNNFVIGVEQALKQNGNKHDFMKRHTKTGRRTNIHFKDFDSFRNEMFS*	rep_hall_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0007	cloud	direct	high	1769	0.999	GCA_003490865.1_00234
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	223836	224186	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	8128	8478	GCA_003490865_1_1_224	GCA_003490865_1_1_224	-	363854	.	.	hypothetical protein	MSKTAFVLTAGVHVFEGSFMPIVIAMRESKEAILELHRTYTLQGKLTNIRAINLNHYTLEISLGNARAPIIHAEGKRERAEAEEAIAPFKTLYPTAQIRVIQFKDAFLFKQCAGLD*	.	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0008	persistent	direct	high	350	0.997	GCA_003490865.1_00235
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	224179	224817	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	8471	9109	GCA_003490865_1_1_225	GCA_003490865_1_1_225	-	363854	.	.	hypothetical protein	MKPSNPMQQLQQWKKNNEQRKINQFVNEMNRTKNLASDSGVSGNGVHPNKLKIELVKNCESAKQIVKVQNVNLHSEQNTQGNARSEAKSKYQGKLYANPLAFKFAQLTRQFKLILDSNRKCLEVYPDDFHHKLKMRDEMMDLIDRLKAGGKLFNALAKSQGGTFCRDNQATLKDFNQANGYLIHKFGEVVAQIERLNIERVEGEKLQGASNE*	.	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0009	cloud	direct	high	638	0.998	GCA_003490865.1_00236
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	224804	225010	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	9096	9302	GCA_003490865_1_1_226	GCA_003490865_1_1_226	-	363854	.	.	hypothetical protein	MKAKKIKAFKEPYTSTPEQLEKSCKRIKQFLAFAEDYLHSGHYKGLAASIEQIKKAATIRKVAQHETK*	.	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0010	cloud	direct	high	206	0.995	GCA_003490865.1_00237
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	225000	225200	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	9292	9492	GCA_003490865_1_1_227	GCA_003490865_1_1_227	-	363854	.	.	hypothetical protein	MMIKPNLPYQLIFVYDNGDQFIEGEYGTLREALQAKIKCKHEIGQADICGRVLEVITILKGEENES*	.	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0011	persistent	direct	high	200	0.995	GCA_003490865.1_00238
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	225190	225561	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	9482	9853	GCA_003490865_1_1_228	GCA_003490865_1_1_228	-	363854	.	.	hypothetical protein	MFNQSILSALQVMADFNDINNYKQIPIPMSKEKLTDLRSESENLCESIEYGLMHLGDLMQTLGNLADTEQDFTREAMSNDNVKHIGGLIKANAYLLNALRETASLSEYYLAGGLDGEIERNDD*	.	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0012	persistent	direct	high	371	0.997	GCA_003490865.1_00239
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	225554	226483	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	9846	10775	GCA_003490865_1_1_229	GCA_003490865_1_1_229	-	363854	.	PF10554.9	Ash protein family	MNSKHSYFIQFTKNFNISALQSAVNFAKVFAQSQKTTASREKLNYLHQANDSTPFNRAFFIRNIRTPQSNADFVFNLNPIILSMVERNEQSLTGCLPYVAVFHLVTFYRPTVESLAVVLENKHMELTQMYQFIFALIRAPQIKIRLLADTEQQARSRFTDGDTLLFVGRINQNPLKNNRTSSIYGNNHSLPKCEDAGSIESTTTRKGNRNPYQCGIFLPKIHSLHVPEKSGALSYIEFAVRLRDRNKALSTNQIRSFRGVVETVSHPMGDTSKNTKHGNPTMKIYPKNNRTLATFPTLSVPVTQGGANV*	hhsuite_tools	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0013	cloud	direct	high	929	0.999	GCA_003490865.1_00240
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	226650	226961	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	10942	11253	GCA_003490865_1_1_230	GCA_003490865_1_1_230	-	363854	.	.	hypothetical protein	MNEARKPTQFLKVLHRLIFSSISGIDGYSMGMTSARNYISELERNHLTGKVKRTTEKTADGMGQYYRYEIADAEQLKQVIAIYKAKGGELTAHEEQQAYFRFR*	.	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0014	cloud	direct	high	311	0.997	GCA_003490865.1_00242
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	226973	227182	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	11265	11474	GCA_003490865_1_1_231	GCA_003490865_1_1_231	-	363854	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MSKTENLNPQQKLISGEIACHIVGFGRTKLNELVKAKQFPQPIRFSQNFVRWDLEEVNAWIEEQKAARA*	mmseqs_cdd	nonviral_gene	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0015	cloud	direct	high	209	0.995	GCA_003490865.1_00243
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	227355	228317	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	11647	12609	GCA_003490865_1_1_232	GCA_003490865_1_1_232	-	363854	.	.	hypothetical protein	MELLPLDYYSLNQSVDFINQRTNSAIKENLLYSYAIEEKIRFLLQIEIKDNQLVKIGRNESEGFFISDDSEIYFKERSIECEDKIGLHLKDCSSSLSIVHNNEITLDGDDLYLSFNKAKITEYKGYIVLHPELLDLFCNQSLPQHGVKNTNYLLLDEFNVQTPFEADIFTSFNFRMEYPKYNEDERLYIKHTFRVNFSDIKISYDDLIKLFPSENAWREQANLKQEIAKLKTEILDKEAENNQLKQQISEQNSPILLGVHRNDDLLKIAIEVRNKYWADYPENVKSNAQIRDYIIREYGVARTTAEEIEKIACPINRKKN*	.	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0016	cloud	direct	high	962	0.999	GCA_003490865.1_00244
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	228414	228800	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	12706	13092	GCA_003490865_1_1_233	GCA_003490865_1_1_233	-	363854	.	.	hypothetical protein	MIKSVLSTFGSFVFSALDFLLFLAILLFIGFLAFIFWPILKWPLLAFLICAIVFFCYLIYKIKEKPKPLEQDEVLSDWAKQELQRPIIQRILQKQEQNKPFITGAITHVSDDGKETRLGNITINLKDK*	.	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0017	cloud	direct	high	386	0.997	GCA_003490865.1_00246
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	229041	229325	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	13333	13617	GCA_003490865_1_1_234	GCA_003490865_1_1_234	-	363854	.	.	hypothetical protein	MRCKQAKQNLLLSAVNHYKKSTALFTFVSLYDDEEPYAISEVIHALKCKCNAAKREIDSRQNSPNMEVLETIYHIAHKNLEDMKKAERRIAKRR*	.	hypothetical_protein	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0018	cloud	direct	high	284	0.996	GCA_003490865.1_00247
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	229322	230989	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	13614	15281	GCA_003490865_1_1_235	GCA_003490865_1_1_235	-	363854	.	CDD:COG4626	Large-Terminase	MEIWHEYAKKVQSGEIVACRKIKQAVARYFDDLANPAYFFDESAVNKFLAFSRLCPHVKGHLRGQPIELSDWQTFLFANLLGFKRTDTGLRKYRSAYIQVARKNAKSTVAAVLANWFLLMESGQQDIYTAAVSRDQARIVFDDARQMCLLSPPLRKRLNIQQHKLINPKSNSLMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGSNVISACKQHYDYCAQILEGNEQNDSLFVLIFELDEESEIDNPENWIKANPNIGKSIPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNWAQCARNYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPQGKKVRLITRHYIPEFQLNNVANKNRAIYRNWVRQGWLIATEGDCIDYDKIRDDILKDAENFNIKMIGFDVWNATHLRTQLQAAGLEVEPFPQTYQRFSPVAKSAEVLINRQVIEHNGDPVLSWALSHVVMETDANANIKPNKKKAANKIDPAVAFLMSFGTYQLEYGDLIFELSEEHKQALEQFNGIDL*	hallmark_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0019	cloud	direct	high	1667	0.999	GCA_003490865.1_00248
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	230996	231364	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	15288	15656	GCA_003490865_1_1_236	GCA_003490865_1_1_236	-	363854	.	CDD:COG3747	Small-Terminase	MTKRTKYKAPDFLDELAKSQWKARITQLSYRGDIKPEDLTNLEIYCINYSLFRSAVADIAKNGFSIVNSQGTQSRNPALSAKADAEKVMIKMSALLGFDPVSRRKNPVETDVTDMLDEILTM*	hallmark_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0020	cloud	direct	high	368	0.997	GCA_003490865.1_00249
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	231561	231947	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	15853	16239	GCA_003490865_1_1_237	GCA_003490865_1_1_237	-	363854	.	PDB:5H0M_A	HNH-endonuclease	MPYQPLRRCSYPGCRNKVKAGRCEEHKPKDTRPSSSARGYDHKWSKYRAQYLKHHPLCVMCLEQGKYTPATVIDHIKPVENGQADPLFWVASNHQPLCRDCHSYKTRVIDQRGFGAKKDGNPSNIIKQ*	common_virus_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0021	cloud	direct	high	386	0.997	GCA_003490865.1_00250
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	231962	232276	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	16254	16568	GCA_003490865_1_1_238	GCA_003490865_1_1_238	-	363854	.	CDD:cd08054	Head-Tail-Connector-Protein	MVEINLTIDEIKAHLNLDHDLDDELLEAYKSTALEVCRKHIGKTFGEEETEQTVPFTPAIKVGCLMYIAYLYTNREAVTDLANLKPAPMTISALWDVYREPCVY*	hallmark_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0022	cloud	direct	high	314	0.997	GCA_003490865.1_00251
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	232263	232631	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	16555	16923	GCA_003490865_1_1_239	GCA_003490865_1_1_239	-	363854	.	PDB:2KZ4_A	Head-tail-adaptor	MNKNRGQAMAIMIKAGKYNKVISLQKQVNEQNDYGGIVSKWKTVANIRAAVEPLQGREFFSGAVPLNENTVRIRIRYGTNVDNTMRVKYGNRSLEIMNIIDSKEAHKELQLICKELTGNGGN*	hallmark_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0023	cloud	direct	moderate	345	0.935	GCA_003490865.1_00252
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	232591	233781	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	16883	18073	GCA_003490865_1_1_240	GCA_003490865_1_1_240	-	363854	.	CDD:COG4695	Portal-protein	MAINELLSYLGVSNTGAGEFVSPNTAESLPAVMSAVTVISEAVASMPCYLYQLKDDGRERVYRHPVDYLLNEMPNRSQTPYQFKYTMMRHCLLNGNAYAVIEWNSKGEPVSLTPYGPSAVNIYRKVGGEYIYQITDLDGNSKNYLQDEILHLRHSSLDGFMGRSPITICRETVGLGIAQQKHGSAVMKNGLMASGLITTAEWLDDAKAQKAVKALERYKGAKNAGKTPILEGSMEYKQLGMTNQDAEWLASRTFTISDIARIYNISPIFLQDYSNSSYSNFSEASRAFLSQTLRPWLTNFEQQLKDALMIDLGSNSKKRYLIEFDTSDLLRTSQSERFKSYDVAIKAGVMCPNEVRRREGLPPYEGGEEFSQAWKQTVEVKRGDEQEPGASDGNHD*	hallmark_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0024	cloud	direct	high	1190	0.999	GCA_003490865.1_00253
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	233825	234391	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	18117	18683	GCA_003490865_1_1_241	GCA_003490865_1_1_241	-	363854	.	CDD:COG3740	head-maturation-protease	MNKEFEIRSSEITADSENKKLVGYVVKWNSPSEVLYCDFVEQFSANAFSESLSSGADVRALFEHDHSKLLGRTRAGTLKLEEDTIGLRFELMPPDTTLGRDLLVSVERGDITGMSFGFWAKEETWNFDVEPCQRTVAKAELFEITVTSIPAYPESSVEIAKRSMATAKGKTQGKSTALLKQWLDVAEA*	hallmark_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0025	cloud	direct	high	566	0.998	GCA_003490865.1_00254
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	CDS	234445	235632	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	18737	19924	GCA_003490865_1_1_242	GCA_003490865_1_1_242	-	363854	.	CDD:COG4653	Major-Capsid-protein	MFKKLLELRQQKAEKVAAMRAMLDKAEQENRSLNDAENVDFEKLKDLVKQLSDEIARYETVADEERNIADKGKPVETRGKTFSNDELRHYIKTGELRNLSTTGQEDGGYTVIPQLDKDVMKRLTDDSVMRQICNVVRLPVGAKEYKKLVSAGGAVVAHGEEGQARNDTATPKLHEVTIALNPIYAYPKTTQEILDFSSIDVLGWLTDEITESFTETEETDLTGGDGTKKSKGFLSYERSTEADKVRAFGKLQKLDVAGADKITADTLIDLFYTLHSKYRKNAVWVMSSTIAAALQKLKNKNGDFIWRDGLTVDAPSTLLGRPVYFLETMPASGANKPVVAFGDFKRGYFIVDHETGVRTRPDNITEPGFYKVHTDKYLGGGVVDSNAIKFIEVTA*	hallmark_hmm	common_virus	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_CDS_0026	cloud	direct	high	1187	0.999	GCA_003490865.1_00255
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	80587	81411	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	1	825	GCA_003490865_1_5_66	GCA_003490865_1_5_66	-	149160	.	2YB1_A	AMIDOHYDROLASE	MTKKYDLHCHSTASDGVLSPTELAHRAYAQGVNVLALCDHDTIAGIDEAEIAAKEVGIELITGVEISTNWEGRGIHIVGLNFDKTHPKMTALLQSQKALREKRAVEIGDKLEKAGIPNAYEGAKALADGEVTRAHYARYLVQIGKVSNDGQAFKRYLGQGKSAFVKAEWTDVPTAIETIHAAGGVAVIAHPLRYNMTGKWVRKLITDFKAWGGDGMEMADCGQAKDQRQMLARWAKEFDLLGSVGSDFHFPCGWVELGKNLDLVDSVIPVWEKF*	hhsuite_tools	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0001	persistent	direct	high	824	0.999	GCA_003490865.1_01205
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	81411	82430	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	825	1844	GCA_003490865_1_5_67	GCA_003490865_1_5_67	-	149160	.	TIGR01036	dihydroorotate dehydrogenase, subfamily 2. This model describes enzyme protein dihydroorotate dehydrogenase exclusively for subfamily 2. It includes members from bacteria, yeast, plants etc. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]	MYQLFRHGIFQMDAEKAHNFTIQCLKLASNPLFQPILKSLIHAPKGFPKTVMGVNFPNPIGLAAGADKNGDAINGFGTLGFGFLELGTVTPVAQDGNAKPRQFRLIEAEGIINRNGFNNNGIDYLIENVKNARYKGVIGINIGKNKFTPLEQGKDDYIFCLNKAYNYAGYITVNISSPNTPDLRQLQYGDYFDDLLRSIKDRQAILANQYNKYVPIAVKIAPDLTESELVQIADTLVRHKMDGVIATNTTISRDTVTGMKNAEQQGGLSGKPLQHKSTEIIKRLHQELKGQIPIIGSGGIDGLQNAQEKIEAGAELLQVYSGLIYHGPKLVKELVKNIK*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0002	persistent	direct	high	1019	0.999	GCA_003490865.1_01206
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	82661	82963	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	2075	2377	GCA_003490865_1_5_68	GCA_003490865_1_5_68	-	149160	.	.	hypothetical protein	MLAGYPQTEIESFYRQEKEALAWQADNSTETPMLTQIAQNRGVPFEILVEKVIEKSAQFAVVIGIIIGQRQAFEDRLLALKTPEELTALEQEIEQWQFPT*	.	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0003	shell	direct	high	302	0.997	GCA_003490865.1_01207
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	83039	83272	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	2453	2686	GCA_003490865_1_5_69	GCA_003490865_1_5_69	-	149160	.	PFAM:PF02413.16	tail-fiber-assembly-protein	MTMYYKNGFFDYSYGGFVPEGAVEISQETYLELLNGQAQGKQIIADNTGYPALMEPQPSAAHELNLDTLTWEISTEK*	phrogs_hmm	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0004	shell	direct	high	233	0.996	GCA_003490865.1_01208
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	83272	84492	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	2686	3906	GCA_003490865_1_5_70	GCA_003490865_1_5_70	-	149160	.	pfam03406	Phage tail fibre repeat. This repeat is found in the tail fibers of phage. For example protein K. The repeats are about 40 residues long.	MKAFLHHLQNEAKLIISPTYCVDGEFALSEIARATLQQYGIVQLSSATNSDSETEAATSKAVKTAYDKAVEAKTTADGKVGLNGNESINGEKSFENRIVAKRNIRISDSQHYASHGDHLNIGANNGDCWFEYKSNNREIGTLRIHANGDLTYKRQKIYHAGAKPQFNTDIEGKPNTLAGYGIGNFKVEEFRGNLNTLKTDGIYAITQASRSQNLPVSTSYHIQVIAGSDGAWCRQLAYVAYSTDMYERHQTSQAEDNWSAWVKLNDIEPVRELLSTKANISHTHTVNQITNFNKAVNAVIDSAFTYQKIGDFEIRKYPDGTMIQTGLVVFTVVFTREGTTVHTDLVLPIAYVNKDYRCFITERYESRASGKGQYNWVFMQAKTNTTAKVTSWYLGSADWMTIGRWK*	mmseqs_cdd	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0005	cloud	direct	moderate	1182	0.968	GCA_003490865.1_01209
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	84524	85099	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	3938	4513	GCA_003490865_1_5_71	GCA_003490865_1_5_71	-	149160	.	pfam11041	Protein of unknown function (DUF2612). This is a phage protein family expressed from a range of Proteobacteria species. The function is not known.	MGYSDLLIWQYRNKPKAVSTIKLFESIIGQGFIDLYRLQDVLNIETATGHQLDLVGKHIGQFRVINGYQLRKFFGFRNSPNALGFSQKRLGGAQWYRKRDPLSDSVRLSDDDYRFLIKCRILKNYQIGTLPNLIEACLFIFGEGCHIVDNYDMTVSISVPSASTSDFKKFAINHLGILPRQAGVQYLFNLI*	mmseqs_cdd	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0006	persistent	direct	high	575	0.998	GCA_003490865.1_01211
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	85099	85608	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	4513	5022	GCA_003490865_1_5_72	GCA_003490865_1_5_72	-	149160	.	PFAM:PF04865.13	Baseplate-J-like-protein	MPDVRQVKVLENNTKQRDKYGVEPNSLNIIVDGGADEQIAHVIYENKGAGVGLQGAAETTLTVNGERRAIRFDRATPVDVQVSMHCVRYEDFTEVDKDEIKRLLSIQRFGIGQNLSLSRLYSPINKVGGFWVKELKIGRKGQSLATENITAQPRELIRILATDITIEVE*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0007	persistent	direct	high	509	0.998	GCA_003490865.1_01212
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	85660	86157	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	5074	5571	GCA_003490865_1_5_73	GCA_003490865_1_5_73	-	149160	.	PFAM:PF04865.13	Baseplate-J-like-protein	MGKIIDLSPNSPDGQMVGLLAQMKMDIEELAENVYRQLDPDVATGAWLDQRVAYAGLIRRAASYSYLRSVILTGEPLTHLYAGIVVSDPHKVRWVLTADVQLDSNGSARADFRSEELGAFNLIKNTNLTIETVTLGLTSATTFENAEIGKEEETDLQLRERFFIS*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0008	persistent	direct	high	497	0.998	GCA_003490865.1_01213
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	86338	86691	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	5752	6105	GCA_003490865_1_5_74	GCA_003490865_1_5_74	-	149160	.	PFAM:PF10934.7	baseplate-wedge-subunit	MSVRRLNKEHDWTFGQGFSNYASESDAIAQNVQTRLWSFANGWFLDLEHGLPWLEQMGRGVNMAGWEIKIKRYVLETEGVSRITDYQANFDADTRKLTISIDYQDIYGQQQTARYDT*	phrogs_hmm	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0009	persistent	direct	high	353	0.997	GCA_003490865.1_01214
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	86688	87332	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	6102	6746	GCA_003490865_1_5_75	GCA_003490865_1_5_75	-	149160	.	PDB:4RU3_A	phage-baseplate	MNYAQILATPETATDHQIQQNQLNLHTALPAKVVSFDPAKQTVSLAIQIKMQLVDGSGADIPPLLDVPVSFPRGGGFAVTFPLKAGDEGIAIFSERCIDGWWQNGSASTPLDFRLHDLSDAMFIPGICSVPKAIGGFFTDGLSMQTLDGSTYIRIKNGSILIKGNIEHQGDTSQTGSHSSTGVISSDTDVTAGGISGKTHKHTGDSGGKTGVPE*	common_virus_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0010	persistent	direct	high	644	0.998	GCA_003490865.1_01215
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	87329	88201	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	6743	7615	GCA_003490865_1_5_76	GCA_003490865_1_5_76	-	149160	.	PDB:1WRU_A	Tail-protein	MKQFGRRWKLDISNDQETLSIEQLRVAFEIDKTINEKPNPAKIQVWNLNRDHINQLLSQDYKKVALSVGYGELRQIYVGDITKTRIQREGLDFVLTLECSDGHQAYTQSRAKTTLKAGATDKQIVEELQKTMPKVQSGAIDIPNQRKLPRGRVLNGNSRDILNKIARNNKADWSIQDGALIFLPKDKVLNDDAVLISQDTGMINAPEQTDEGLELTCLLNPALQIGGLVKVESIIEYFNGEYKIVKLAHSGDGIGGDWHSKITVVGGKFQKVEKEKGSQTSNKQSKDKNK*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0011	persistent	direct	high	872	0.999	GCA_003490865.1_01216
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	88216	88341	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	7630	7755	GCA_003490865_1_5_77	GCA_003490865_1_5_77	-	149160	.	.	hypothetical protein	METNASPIMRGAIAFSIVIVALGLFALCITPLANVLIEFAK*	.	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0012	shell	direct	high	125	0.992	GCA_003490865.1_01217
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	88478	88798	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	7892	8212	GCA_003490865_1_5_78	GCA_003490865_1_5_78	-	149160	.	7KH1_B4	Myoviridae, Phage, Baseplate complex, VIRUS	MVRRMLKIPLTQHPYQEQTFEFNGIKIRLTLRFNSIGQFWAMDVFESVNQKQICRGHAIACGVPLLARTTQPYFFYLDDESGAELDPMSMEDLGTRCFLYIGEKAS*	hhsuite_tools	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0013	persistent	direct	high	320	0.997	GCA_003490865.1_01218
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	88792	89568	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	8206	8982	GCA_003490865_1_5_79	GCA_003490865_1_5_79	-	149160	.	PFAM:PF06995.10	tail-fiber-protein	MLNFAQVSNRSIGTITFDVVTTEDHQSDLSITENPIESGAAIADHAVIQPKQVTINGVMVDHDHSTFGLDLPFIGNIRGGIDFLNNFPLPVKVITQTSQSIAKAGRVISQVAGAYSQAKRTLNQARTIAPFLPDFGLGGLLDSSAGDSRVQKCYADLVACQKSGETIDIQTGINLYKNMLIQSVAVNQSQDGSATFTITAREIFIVETQTAQSKSSASGKSKSGRSSIQSVTKSQQGSTQPKNDTPKRTSSLFNLFKW*	phrogs_hmm	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0014	persistent	direct	high	776	0.999	GCA_003490865.1_01219
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	89574	91664	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	8988	11078	GCA_003490865_1_5_80	GCA_003490865_1_5_80	-	149160	.	UniProt:tr|A0A0A0YSN4_9CAUD	Tail-length-tape-measure-protein-	MLLDELLIKIGIDADSQAMQQFEQFLNAIGDGTESAAENLGTFAEALERAVDDATEQIKAAPEFESFFDSLEKLQSETENLSEDDALDAWVQKLIEGDKLLSEFGESFLQNTEQLSKELQEAGLSAEQVEKVIGKLKSAIEQKTDATEKDTKAVEDNAKSTENLSDNIIDLWATQYGAVGLLNKFELLGISINKTTLKVAAFGAAFYAATIGVKNFVDANLDALDEIKQLSAVTGESADQIYNLGKVAEVNGSSAQAAQSSIEGLSRVIGEAAAGIGRGAKSFEQYGLSAKKANGEVKTSSEMLGEISDKMKAMGEQEQIAMLAKLGIDSSMIQTLRLGNDELKEQIALASVLTLGVGNAENAKTAAAFKDALTQVSQAFRAIGEYVSLRVAPSIQRLAERFTKWFTENNAFIKATLNGFGKILSFLFELAAAIDNVVEHTIGWKNLIYALGATLLWFSRRMLLAFATNPVTLIITAIAALFLLVDDFITYLEGGETALGEFWKPFKTALLWVKSTWKNFVDNFSVDPIGETLSLITDMLELPFKLGLALVVGLWNLFTGEQLDLDVIETKFAQVTDWIKKPFQSAFDWVKGYYDQYIAPIVDTVKGWFSDSGEKVGTASQNTKAYDTMMFDPSYTSAPQVAAVGAKSQTSNADNRVTNSNNKITITQHIQGTDNPKAVADQSARAINNQLSPVVG*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0015	persistent	direct	high	2090	1.0	GCA_003490865.1_01220
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	91815	92225	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	11229	11639	GCA_003490865_1_5_81	GCA_003490865_1_5_81	-	149160	.	PFAM:PF10876.7	Phage-tail-assembly-chaperone-protein	MESKQINIENVAYTMTPANAMTAWTALKNAMKLLQSVDLSSLGNNKKLGASVLTTVLANLGDPSIKELEDIVLKHTSCEQDGKLYRLSERFDSHFNQHRGHLIPVLKEGLMYQFADFFIGGGGLLSNIQANLKAKK*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0016	persistent	direct	high	410	0.998	GCA_003490865.1_01221
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	92254	92625	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	11668	12039	GCA_003490865_1_5_82	GCA_003490865_1_5_82	-	149160	.	PFAM:PF11681.7	virion-structural-protein	MAVFDPKQVVVLLDGKEMSDWADGSDVINATNQVDAGQMVIGANGTGVFIANPDQSGKLTLKIKQHSEDNAYLSKLFNQQKTSIKTYLPMTLAIRDLINLLHLQLICVKMGTMRQHGRLCSRK*	phrogs_hmm	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0017	persistent	direct	high	371	0.997	GCA_003490865.1_01222
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	92676	94184	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	12090	13598	GCA_003490865_1_5_83	GCA_003490865_1_5_83	-	149160	.	PDB:5LI4_E	tail-sheath	MALSISQIVNVQLNTVPKSAARKSFGIVALFTPEAGQAFADATTRYVYVENQRDVEQLFGTNSETAKAAQPFFAQSPRAKQLIIARWQKAPVTIEATKNTLSGATLSDDLDRFKAVVNGQFSLTIGTAIKKVTGLSFADASDFNAIATKIQAKLTALSSSLSISYDGVGQRFIITSNNAGEDKATEIHYAFNGDDNGEYIGTLLKLENGQASRKVGKASISLKKETVAEALFNVAEVNNAWYGFTFATQLTDSEVESAAKYAQANTKMFGANVIRVEQLEWSADNIYKKLYDAGLDHTLAMFDKNDMYPASSALARLLSTNFAANNSTLTLKFKQQPTITADEITATEFSKAKRLGINVYTYFDDVAMIAEGTVMGGKFADEIVILDWFTDAVQKEVFARLYKSPTKIPLTDKGQAVLIAAVEKVCLEGVNNGAFAPGQWTGDSFGNLTTGDYLEKGYYVWAAPMDTLSDSDREQRRATPIQTAVKLAGAIHSSDVIVNYNR*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0018	persistent	direct	high	1508	0.999	GCA_003490865.1_01223
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	94189	94692	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	13603	14106	GCA_003490865_1_5_84	GCA_003490865_1_5_84	-	149160	.	PDB:5A21_G	tail-completion-protein	MDTTTISALDTAKLRKWIQQALQLPNGAVIGGWLPENPLPAFITVDLMTSNEIGQATREFDGKRERIIQSMQSTVSLSCFGRNSLAQCYKLKAIFQSSAFLSFLKSNHWGVIRFSDIRNLTATVGADYEERGQFDVVFSHHHIVDTPLDPIENVEQRTNHLIQQIGG*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0019	persistent	direct	moderate	441	0.875	GCA_003490865.1_01224
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	94984	95430	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	14398	14844	GCA_003490865_1_5_85	GCA_003490865_1_5_85	-	149160	.	PFAM:PF05069.12	Virion-morphogenesis-family	MAVQITGNLAQAKGLIERLRADKDKAVYIGFPAEFDEPLEGAKNFNLSSLAAVLEFGNEHIPSRPFLRQTLSKNQGKYTALFTQLFKQGLQIERIYEQLAVVAQGDVQLNIARGNWVANAKSTIKQKGSSKPLIDTGKMRQSVKGIVK*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0020	persistent	direct	high	446	0.998	GCA_003490865.1_01226
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	95431	95793	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	14845	15207	GCA_003490865_1_5_86	GCA_003490865_1_5_86	-	149160	.	PFAM:PF13262.5	head-to-tail-adaptor	MPTFETDTFLERYPEFKEVDYEKIDLFLSDAEMEVSQSRWGKLYQRGVLALTAHLLRLSLWTTEGGGGANRNLASESAGELSVSYAVPTLTGTDADYQLTAYGQEYLRLRKLVGIGVMVA*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0021	persistent	direct	high	362	0.997	GCA_003490865.1_01227
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	95803	96717	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	15217	16131	GCA_003490865_1_5_87	GCA_003490865_1_5_87	-	149160	.	PDB:5WK1_D	Major-Capsid-protein	MSLLTYVQNGLTAVSKEISETKYPEIVFPQFVYVDQQAAVGITEKLHYGADEHGSLDDGLITTGTSTLDQVEVGFTPTRSYIVQWAKSVTWATPELEQGKLLGLALDTAKIMALNKNAQQTLQKVAFLGHAKDSRLTGLLNNKSVEVHSIKGTSANTKVQAMDFDKSVAFFKEMFLAGMEKTKRIEAPNTFAIDSLDLAHLALTQRNNTDTTALEFLTKSLSAAAGRDVTIKALPSNFGTRVTSGKTRAMVYVNSKEHVIFDVPMSPTVLAAQQKGLLAYESGLRMAFGGVTFMEPNSALYVDY*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0022	persistent	direct	high	914	0.999	GCA_003490865.1_01228
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	96727	97167	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	16141	16581	GCA_003490865_1_5_88	GCA_003490865_1_5_88	-	149160	.	PFAM:PF11133.7	virion-structural-protein	MSYAYEQAPARAGELGKGNLANAKTTAEKVTGKVKAGDFVALNPTGGVKALSAKTDVLAGVVLSSRIRDEWSEGELVDVMHIGTGDAIWVNIASEKTVSRGSKVFVLTTGGEGKTGAIQGETDTNAIETSYTVIDVKGQLAMITKL*	phrogs_hmm	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0023	persistent	direct	high	440	0.998	GCA_003490865.1_01229
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	97324	98280	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	16738	17694	GCA_003490865_1_5_89	GCA_003490865_1_5_89	-	149160	.	PFAM:PF09979.8	head-maturation-protease	MKFTDKTTQAATQRTITKDGFLAVPAITPKVGVFDYLATELGLKEDGIKKVARTEKSLFSDETIKSFENATLTVGHPKDGVNAKNWKQLSVGVVRNVKRVGDELTAEAWIYDEQAIKTVQEHGVEQLSCGYDCDIKPSTVQDADFEMSPMIGNHVAIVAKGRCGGSVKLADEDKTIMGKTAKILDAFLGAFGIKLSDEQKKQIEDEEKSGSKEGKEPKGEQPTEPKEKQSKPEDKKDEEVNKEEFEKQLKAKDAEIQQLKDAQAKRDAEVKQAAVLADAKTAFKEVNFADNATVREIQESAVVAQGIFTKDEAAKLSD*	phrogs_hmm	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0024	persistent	direct	high	956	0.999	GCA_003490865.1_01230
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	98370	99803	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	17784	19217	GCA_003490865_1_5_90	GCA_003490865_1_5_90	-	149160	.	PFAM:PF04233.13	Minor-capsid-component	MTDDVEIAMQQPQGSFFMDDAKGFQAISAKALMKVLEKYEKSDRTSQAENIANGFVGRGDAQNHAEVSTNLKNQTGIDLSAYLRNSPNIAERVNALTAGNIQLIKSIRAQYLDKVQNAVMQAMVRGSLNKDLAAQIKDLGKTTEKRAMFIARDQSSKLNAALTQARHEDVGIKKYMWSASLDERVRESHAEKDGQIFEYSNPPADTGHPGHDFNCRCVQIPVLDNNEQIVKNSPIVSQQEKQQMRSEWSDDFPDTIIDRKLGDATSHPLYENAKKGSIEDAYQLAKDLVTDDAVNKLKQLVGNKNAILIPVHAEEAVGQNMIPVAIATVLSKKLHIPVDLSIVQATKVSRTGGDGWHRLVYSPAFDGIVPKDKYAIILDDTQTQGGTLASLKGYIEENKGKVIASYALTGKQYSVQLRLSKHTLAELRSKYGELESWWKKEFGYDFSRFTEWEARFIINSRKTPDEVRNTILARKQA*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0025	persistent	direct	high	1433	0.999	GCA_003490865.1_01231
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	99832	101163	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	19246	20577	GCA_003490865_1_5_91	GCA_003490865_1_5_91	-	149160	.	PDB:8HDS_J	Portal-Protein	MNILDGIKSLALKLGSKQDQTYYARGLSLTDDLMQIEALWRDNWIANKVCIKRSEDMVRNWRDIFSNDLKSEQLDEFTKLERRLKLRETLTKALQWSSLYGAVGLLVVTDTINITSPLQPTERLKRLIILPKWKISPTGQRDDDVFSPNFGRYSEYTITGGTQSVSVHHSRLLIINANDAPLSDNDIWGVSDLEKIIDVLKRFDSASANVGDLIFESKIDIFKIAGLSDKISAGLENDVAHVISAVQSIKSATNSLLLDAENEYDRKELSFGGLKDLLTEFRNAVAGAADMPVTILFGQSVSGLASGDEDIQNYHESIHRLQETRLRPVLEVLDTLLCNELFGGQPDDWWFEFLPLTVVKQEQQVNMLNTFATAANTLIQNGVVNEYQVANELRESGLFANISADDIEEMKNADELAGNFEEPEGESTQVQASEDEQENGALV*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0026	persistent	direct	high	1331	0.999	GCA_003490865.1_01232
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	101165	102508	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	20579	21922	GCA_003490865_1_5_92	GCA_003490865_1_5_92	-	149160	.	PDB:4IDH_A	Large-Terminase	MSQLNIQFPTKFRPLFESIWRFIIFYGGRGSGKSFSIARALVLRAYQSPVRVLCCREIQKSISDSVIQMLADQVEMLGLQDFFDVQKTQIIEQNGSRFTFAGLKTNITSIKSMTGIDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKVGFDVADEGADSNANAFVHGSVVLDIEVWKNGYVIDSANRTNQSAVKFKADLIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKGKKNQDMFSNIKAQSWWALRDRFYKTYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPSPNMADALVMCYAPTKPKSLLDL*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0027	persistent	direct	high	1343	0.999	GCA_003490865.1_01233
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	102495	103007	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	21909	22421	GCA_003490865_1_5_93	GCA_003490865_1_5_93	-	149160	.	PFAM:PF03592.15	Terminase-small-subunit	MSDVKGKSTSGRGLTPKQEKFCQLYIELGNASEAYRQSYDCQDMKSESINRLAKKELDKIKIRSRVDVLQQEHRQRHNLTLDNIIADLQEYRDICMGRKPLTITTVVKNAQEGTAQSVNTECFVFEPTGANKALELLGKHLGMFTNKVDVTTDGKPLPTVINVTFSDEPA*	hallmark_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0028	persistent	direct	high	512	0.998	GCA_003490865.1_01234
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	103084	103335	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	22498	22749	GCA_003490865_1_5_94	GCA_003490865_1_5_94	+	149160	.	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense mechanisms]. 	MKELIYQPKALKQLRKIPSKAHIIEKCEMLKNFPDCTNIKALTNHTYEYRYRVGDYRVFFNIVGNTMNIVSIEEVKKRDERTY*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0029	shell	direct	high	251	0.996	GCA_003490865.1_01235
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	103319	103666	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	22733	23080	GCA_003490865_1_5_95	GCA_003490865_1_5_95	+	149160	.	COG1396	Transcriptional regulator, contains XRE-family HTH domain [Transcription]. 	MNALTNIQYINNEQGVPAFAVMPIATLNWLKEKANFSDPIETGIPESVAKLALLNDYSALRAWREHLGLTQAEVASRLGISQAAYSQHENSQTLRKSTRIKIATALGINPAQLDF*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0030	persistent	direct	high	347	0.997	GCA_003490865.1_01236
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	103861	104166	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	23275	23580	GCA_003490865_1_5_96	GCA_003490865_1_5_96	-	149160	.	pfam10828	Protein of unknown function (DUF2570). This is a family of proteins with unknown function.	MALAGVVVVLIGALRYQSSVIDELEITTKQQENTIQQQEDANKSLSLALQQERYAVIEQQERNNEIERMAIEHAESVKTIIKTQPCAHTRLPQSVLDRLHK*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0031	persistent	direct	high	305	0.997	GCA_003490865.1_01237
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	104177	104779	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	23591	24193	GCA_003490865_1_5_97	GCA_003490865_1_5_97	-	149160	.	PDB:3WH1_A	Chitinase-	MTMMISEVTFNKIFPHAVKGVYQAISAQIEKAGCVNKMQQAMFLAQCGHESGGFTRFKENLNYSWLGLSKTFRKYFPDPLTAKKYERKPELIANRVYANRLGNGDEKSGDGWKYRGRGLIQITGKDNYAAFRKWLGRDIEPDDVAGNLDLSVKTAVWYWKCYELAELNSVEKVTRRINGGLNGIDERCKLYRALMVTDND*	common_virus_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0032	persistent	direct	high	602	0.998	GCA_003490865.1_01238
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	104748	105104	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	24162	24518	GCA_003490865_1_5_98	GCA_003490865_1_5_98	-	149160	.	TIGR01594	phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda. [Mobile and extrachromosomal element functions, Prophage functions]	MPIKEPDVWALIWSWLQTNLSSSSAQSAFWALFISLLRFGFMRKKPAIRYVLIDAAMCASIAGVAVPICTHLFGHTEYSSFLGTMIGFVGTEKIREFLFKFINRRIEKDDNDDFRSDI*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0033	persistent	direct	high	356	0.997	GCA_003490865.1_01239
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	105440	106030	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	24854	25444	GCA_003490865_1_5_99	GCA_003490865_1_5_99	-	149160	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MRMMFAIFSATQTRVMLFQNTVKQGGVAKRDTPTKSAVQEMTFINEPNLYRLIIKSRKPEAEPFEAWVFEEVLPQIRKTGKYQLQPQQLALSEPEKKFTREFTEHDLQQLVWAWFALLRGTELCQVLHPALKQIGSHYAASVHDIAYEYRSNLRQAHNVLTRITEQFECEQGNNWRVLKYLRAYNPKATGFQLEIL*	common_virus_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0034	cloud	direct	high	590	0.998	GCA_003490865.1_01240
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	106480	106785	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	25894	26199	GCA_003490865_1_5_100	GCA_003490865_1_5_100	+	149160	.	TIGR02683	putative addiction module killer protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the upstream member of a gene pair, where the downstream member is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, often are located with prophage regions, but also in both integrated plasmid regions and near housekeeping genes. Analysis suggests that the gene pair may serve as an addiction module.	MTMTIQIKTTLTFDSWLSKLKNLRAKAKINARIKRLQFGNFGDIKSVNDGIFELRIDEGQGYRIYLKNQNGVLVILLCGGDKSTQEKDIKQAKLLAQELGL*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0035	cloud	direct	high	305	0.997	GCA_003490865.1_01242
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	106782	107075	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	26196	26489	GCA_003490865_1_5_101	GCA_003490865_1_5_101	+	149160	.	COG3636	DNA-binding prophage protein  [Mobilome: prophages, transposons]. 	MTEQLKDFDVAEHLISEEEIQLYLNEILQEDNIELILSSLGDIARARNMSQIARDAGISREGLYKALSGTGNPTFATVMKVMKALNLQFQVQQSRFA*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0036	cloud	direct	high	293	0.997	GCA_003490865.1_01243
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	107107	107475	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	26521	26889	GCA_003490865_1_5_102	GCA_003490865_1_5_102	-	149160	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MSYSVERVLEKWGNCWGRDRIGTEYPSTTISIPVLPTVRKAHIRFLTDDECLKIEEQIMNLHEDSLLQYQILMALYVQQAKERDICTARHISPAHMYRERARGVRFLKGAFTGAKIKFMFLG*	phrogs_hmm	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0037	shell	direct	high	368	0.997	GCA_003490865.1_01244
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	107477	107836	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	26891	27250	GCA_003490865_1_5_103	GCA_003490865_1_5_103	-	149160	.	PFAM:PF05766.11	NinG-recombination-protein	MKETQAVFNKFIRLRDKNEPCISCGRYHQGQYHAGHYRSVGACPELRFCELNVHKQCAPCNDHKSGNIIEYRINLVNKIGADKVAWLERQDHEPKKYTIEDCKAIIKYYKAKIKELEGE*	common_virus_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0038	.	unmatched_CDS	none	0	0	.
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	108034	108237	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	27448	27651	GCA_003490865_1_5_104	GCA_003490865_1_5_104	-	149160	.	PRK00049	elongation factor Tu; Reviewed	MSSKEKFERTKPVVNTEIIGRVDHGKNIIAAAITTVLANTTKGDFVATMPKVSYPASRTNKKAIYRE*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0039	cloud	direct	high	203	0.995	GCA_003490865.1_01245
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	108317	108733	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	27731	28147	GCA_003490865_1_5_105	GCA_003490865_1_5_105	-	149160	.	pfam05772	NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	MSQYKPFFLRDQRIKNNCLDLIKELPTDDKKPLVVKIQPITRSLEQNSKLHALLSDISKQCEFNGKKRDIDTWKMIMVSAHKIATGGQAEMVIGLEGEVINLRESTAQMSVKRLASLIEYVQAWAAENDVILSDGWRH*	mmseqs_cdd	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0040	shell	direct	high	416	0.998	GCA_003490865.1_01246
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	108770	108994	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	28184	28408	GCA_003490865_1_5_106	GCA_003490865_1_5_106	-	149160	.	.	hypothetical protein	MTSYKCPKCGAELEDFYTPDYFISSSEWEDDRFRCNGHLIEPIPFPQVSKFSAVNRTKSCGYFGLEDLGVEYKE*	.	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0041	persistent	direct	high	224	0.996	GCA_003490865.1_01247
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	108991	109617	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	28405	29031	GCA_003490865_1_5_107	GCA_003490865_1_5_107	-	149160	.	PFAM:PF06992.10	Replication-protein-P	MNQLTNQSLHQGVSPQVEKFIDTLFDQLCASCPQLLNLTPERLQVVKRQWILGFAENGITKITQVKRGMAEMRAKPNGYLPSVGEFIQACKVLDYHVLGLPNEAELYQRYNTFLGYARFNRDEFQYRSKVEFWLLKNLYEKCKKKSEEDTLKAIPKLLTKAAEKVRSNFPFEGIPKMIPTKPRFYDKAKADKARDSLMAMMKGKGALQ*	rep_hall_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0042	cloud	direct	high	626	0.998	GCA_003490865.1_01248
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	109614	110336	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	29028	29750	GCA_003490865_1_5_108	GCA_003490865_1_5_108	-	149160	.	pfam13730	Helix-turn-helix domain. 	MSMRLMVQAMNCKVGNPARKLVLLKLADNANDDGICFPSYQYIADKCEMSKRSAISHIDDLIKMGLVTKKARKNKDGSSANLYLLHLEQGSEKSALGGENISLGSEKFALGGSEKFAPITSHSLEPVNEPKKTTQKSESEILLERFGITGQLAKDFITHRKTKRGAISETQLSRLQKQADKAGISICEVVEICIERNWQGFNASWDWRDEKLRTSQAQKMSFEEKNALPWNRPEDWENVL*	mmseqs_cdd	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0043	persistent	direct	high	722	0.999	GCA_003490865.1_01249
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	110333	110953	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	29747	30367	GCA_003490865_1_5_109	GCA_003490865_1_5_109	-	149160	.	COG3645	Phage antirepressor protein YoqD, KilAC domain [Mobilome: prophages, transposons]. 	MSSREIAEITHKEHKNVLRVIRDLIEQNLVAQIEPLKFEYRNQWFDYYELNKRDTFVVVARLSPEFTAAVVDRWQALENRQKPTALIPQSFSEALMLAAQLQAEKERNAPKVAFVDHYVEVGTSKSFRETAKILKIPERALVNRLVEDKYLYRQSGVLLPYQSAHTKDLFTVKTGTAEHGHNYTQTRVTSKGIEFIASRYASELML*	mmseqs_cdd	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0044	persistent	direct	high	620	0.998	GCA_003490865.1_01250
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	111032	111298	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	30446	30712	GCA_003490865_1_5_110	GCA_003490865_1_5_110	+	149160	.	COG3645	Phage antirepressor protein YoqD, KilAC domain [Mobilome: prophages, transposons]. 	MEVGTSKSFRETAKILKIPERALVNRLVEDKYLYRQSGVLLPYQSAHTKDLFTVKTGTAEHGHNYTQTRVTSKGIEFIASRYASELML*	mmseqs_cdd	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0045	persistent	direct	high	266	0.996	GCA_003490865.1_01251
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	111295	111462	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	30709	30876	GCA_003490865_1_5_111	GCA_003490865_1_5_111	+	149160	.	pfam13730	Helix-turn-helix domain. 	MSMRLMVQAMNCKVGNPARKLVLLKLADNANDDGICFPSYQYIADKCEMSKRSAN*	mmseqs_cdd	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0046	persistent	direct	high	167	0.994	GCA_003490865.1_01252
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	111515	111841	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	30929	31255	GCA_003490865_1_5_112	GCA_003490865_1_5_112	-	149160	.	PFAM:PF10078.8	CII-like-regulator	MTVIYQREYAMARNKLTRSARVLSDQVIDKYYKQKQYEVAEGMETTPSTLSRFISNEEFTQTFNFIAACQFGVFDTDTHIAIEKSEFEMLLLASQGFDKRLREKYLGK*	phrogs_hmm	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0047	shell	direct	moderate	297	0.908	GCA_003490865.1_01253
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	111838	112077	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	31252	31491	GCA_003490865_1_5_113	GCA_003490865_1_5_113	-	149160	.	PFAM:PF10078.8	transcriptional-repressor	MENLKHIIDSLGAAKVADLCGLSVRAVYKWRTSNSLPRTEYTGETRYSEILSQALGGSVSAEEIRHFSKPIKSGSAIIA*	phrogs_hmm	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0048	cloud	direct	high	239	0.996	GCA_003490865.1_01254
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	112178	112843	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	31592	32257	GCA_003490865_1_5_114	GCA_003490865_1_5_114	+	149160	.	PDB:2FJR_A	Repressor-protein-CI	MITEEKIKQNFAARLDIACKRKNLPEKGRGKIIADMLKITPKAVSKWFNAETLPTQANIYVLADFLEVTKEWLTYGDKNASIEKIEKQIYYPLLSPIQAGLWTDIRSLEGFDGYEMIPSTAIASENSFYLRIEGKSMLPRFNEGDLVLIDPDIVPTPGKFVAAINGDNEATFKQYKELGTKTPEGIPHFELVPLNPMFPTLSSLNQEIRIIGVARERVEML*	common_virus_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0049	cloud	direct	high	665	0.998	GCA_003490865.1_01255
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	112877	113650	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	32291	33064	GCA_003490865_1_5_115	GCA_003490865_1_5_115	+	149160	.	PF09192.10	Actin-fragmin kinase, catalytic	MATVEEVLLDKRMDKIIFIRERMEMGITRPFICQTDKENWFIIKTLSMMPISQLLAEVIGSTLAHEIGLPCPSIDFVEITPKSTQYVSSEWRQDLPNGIAFASSFVVNAKIAKTVQVKNPAFLSEPEQKLLYMFDRWILNSDRTASQVGTGNINLLFDEQQQKILVIDHNLAFDERADFSEHIFSPQNREWRLDWVDKQTFTDKAIDTLKKFDHIYQSIPDDWFVGDEEFHKIEHQINRIKALLNRITQENYWDNIE*	hhsuite_tools	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0050	cloud	direct	moderate	707	0.913	GCA_003490865.1_01256
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	113647	114462	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	33061	33876	GCA_003490865_1_5_116	GCA_003490865_1_5_116	+	149160	.	pfam11236	Protein of unknown function (DUF3037). This bacterial family of proteins has no known function.	MKQPILYSFVRYRPYFETGEFVNVGLLMCEPEKKKLTYQLVPKNNKRVNDFFYKSKMFETVRETINDELQYVVNQPFNGSAQDIATFFHHYIDVKEGIVQYSNAAVGMVDDPQDYFNKLYTQFIQNTGVKTESQEQVILKHYKTLFRQENDSVLAQYKQYMVNGDFAKFALPLALKIQQDKHILKAVKPLAFDQVESPSMIEHCDSWVAKINRAEQEGFIKRENILFALDTPNTAHKANILDTIKRTFDHFKLQHISWNEDKQIINFAKAI*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0051	cloud	direct	high	815	0.999	GCA_003490865.1_01257
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	114956	115129	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	34370	34543	GCA_003490865_1_5_117	GCA_003490865_1_5_117	-	149160	.	COG3422	Uncharacterized conserved protein YegP, UPF0339 family [Function unknown]. 	MKFETYVDARIEWRWRLKADNGKIIADSGEGYKNYTDCLHAIDLVKSTNQSTKVEMA*	mmseqs_cdd	nonviral_gene	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0052	cloud	direct	high	173	0.994	GCA_003490865.1_01258
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	115143	115352	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	34557	34766	GCA_003490865_1_5_118	GCA_003490865_1_5_118	+	149160	.	.	hypothetical protein	MKKYLFHYYFQGTKWACDVYANNPEEAKEKIKAMSQAIYDGELKFEIHIPENPLSKLARLVARIIKKFT*	.	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0053	cloud	direct	high	209	0.995	GCA_003490865.1_01259
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	115879	116166	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	35293	35580	GCA_003490865_1_5_119	GCA_003490865_1_5_119	+	149160	.	.	hypothetical protein	MNRYEALGRYVEAKEKLDRLKRKRDITTTQLEKAFSGLKYINNFSFEPQSDIQFATQDIETLLERYKALNNDITALVIESNQYAELCDKPQIEIK*	.	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0054	cloud	direct	high	287	0.997	GCA_003490865.1_01260
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	116470	116799	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	35884	36213	GCA_003490865_1_5_120	GCA_003490865_1_5_120	+	149160	.	pfam10548	P22AR C-terminal domain. This domain was identified by Iyer and colleagues. It is found associated with pfam10547.	MTNSNLIPVFNGLIQNQPVQLCNARELHAFEIETLVWLWCGHKQMNTLLGDMIRPLETIGSYFTGMVISHHQEYRRQYKNTLPTIQKLIALFKAFNQMNWERAKNLIAQ*	mmseqs_cdd	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0055	cloud	direct	high	329	0.997	GCA_003490865.1_01262
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	116878	116997	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	36292	36411	GCA_003490865_1_5_121	GCA_003490865_1_5_121	+	149160	.	.	hypothetical protein	MNKLIITLVCAFVVYMVHALNLNQDFDGKICHAEQTQQY*	.	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0056	shell	direct	high	119	0.992	GCA_003490865.1_01263
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	117039	117137	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	36453	36551	GCA_003490865_1_5_122	GCA_003490865_1_5_122	+	149160	.	.	hypothetical protein	MEPIKLSQKAEEEIVNAAKMAALSNKPKFNYA*	.	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0057	cloud	direct	moderate	98	0.99	GCA_003490865.1_01264
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	117299	117751	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	36713	37165	GCA_003490865_1_5_123	GCA_003490865_1_5_123	-	149160	.	PDB:1Z19_B	Integrase	MKWGAEEEKKMELQSQGLQPDTLFSDVIKRYLNEITPTRRGEKHEFNRLNRFLRHPVTDKYISDVSRIGDEELCFDIKSSVLDATFRKLKKLAEREYLHFHDTRREALTRLSKKVDVMTLAKISGHKDISILQNVYYALIWRRWRNYLIS*	common_virus_hmm	common_virus	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0058	cloud	direct	high	452	0.998	GCA_003490865.1_01265
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	CDS	118109	118201	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	37523	37615	GCA_003490865_1_5_124	GCA_003490865_1_5_124	-	149160	.	.	hypothetical protein	MAAEKLTKKRLAQILIMLCILIIAFVWRYF*	.	hypothetical_protein	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_CDS_0059	persistent	direct	moderate	92	0.989	GCA_003490865.1_01267
GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote	cenote	tRNA	220217	220302	GCA_003490865.1	QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865.1_QQGI01000001.1	GCA_003490865.1|QQGI01000001.1	GCA_003490865_1_1	GCA_003490865_1_1@C13	4509	4594	tRNA-Leu	tRNA-Leu	+	363854	.	tRNAscan-SE score: 57.5	Leu	NA	tRNAscan-SE	.	C13	19924	215709	235633	GCA_003490865.1|QQGI01000001.1@region_215710_235633@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote	cenote	tRNA	117927	118009	GCA_003490865.1	QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865.1_QQGI01000005.1	GCA_003490865.1|QQGI01000005.1	GCA_003490865_1_5	GCA_003490865_1_5@C5	37341	37423	tRNA-Leu	tRNA-Leu	-	149160	.	tRNAscan-SE score: 61.6	Leu	NA	tRNAscan-SE	.	C5	37615	80587	118202	GCA_003490865.1|QQGI01000005.1@region_80588_118202@tool_cenote_tRNA_0001	.	.	.	.	.	.