core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	323990	324835	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	1	846	GCA_003493965_1_3_315	GCA_003493965_1_3_315	+	354286	.	COG2961	23S rRNA A2030 N6-methylase RlmJ [Translation, ribosomal structure and biogenesis]. 	MLSYRHSFHAGNHADVLKHIVLMLILENLKLKEKGFFYLDTHSGVGRYRLSSNESEKTGEYKEGIGRLWDQTDLPEDVARYVKMIKKLNYGGKELRYYAGSPLIAAELLRPQDRALLTELHPSDYPILRNNFSDDKNVAVKCDNGFQQVKATLPPKERRGLVLIDPPYELKEDYDLVVKAIEEGYKRFATGTYAIWYPVVLRQQTKRIFKGLEATGIRKILKIELAVRPDSDQRGMTASGMVVINPPWTLETQMKEILPYLTKTLVPEGTGSWTVEWITPE*	mmseqs_cdd	nonviral_gene	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0001	persistent	direct	high	845	0.999	GCA_003493965.1_01201
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	324999	325328	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	1010	1339	GCA_003493965_1_3_316	GCA_003493965_1_3_316	+	354286	.	TIGR00103	DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium. [Unknown function, General]	MFGKGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGMKFPF*	mmseqs_cdd	nonviral_gene	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0002	persistent	direct	high	329	0.997	GCA_003493965.1_01202
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	325390	325992	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	1401	2003	GCA_003493965_1_3_317	GCA_003493965_1_3_317	+	354286	.	COG0353	Recombinational DNA repair protein RecR [Replication, recombination and repair]. 	MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSCGMNLARALTEAMSRIGHCSQCRDFTEEEICNICNNPRRQNSGLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEMCRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID*	mmseqs_cdd	nonviral_gene	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0003	persistent	direct	high	602	0.998	GCA_003493965.1_01203
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	326008	327963	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	2019	3974	GCA_003493965_1_3_318	GCA_003493965_1_3_318	+	354286	.	PDB:5D5H_A	DNA-topoisomerase-1	MRLFIAEKPSLARAIADVLPKPHQRGNGFIKCGDNDVVTWCVGHLLEQAEPDAYDPKFKQWRLEHLPIIPEKWQLLPRKEVKKQLSVVEKLIHQADTLVNAGDPDREGQLLVDEVFSYANLSAEKRNKILRCLISDLNPSAVEKAVKKLHPNRNFIPLATSALARARADWLYGINMTRAYTIRGRQTGYDGVLSVGRVQTPVLGLIVRRDLEIEHFQPKDFFEVLAWVNPENKEEKTQEKSTALFSALWQPSKACEDYQDDDGRVLSKGLAENVVKRITNQPAEVTEYKDVREKETAPLPYSLSALQIDAAKRFGMSAQAVLDTCQRLYETHRLITYPRSDCRYLPEEHFAERHNVLNAISIHCEAYQVLPNVISTEQRNRCWNDKKVEAHHAIIPTAKNRPVNLTQEERNVYSLIARQYLMQFCPDAEYRKSKITLNIAGGTFIAQARNLQTAGWKELLGKEDDTENQEPLLPIVKKGQILHCERGEVISKKTQPPKPFTDATLLSAMTGIARFVQDKELKKILRETDGLGTDATRAGIIELLFKRGFLTKKGRNIHSTETGRILIQALPDIATQPDMTAHWESQLTDISQKQATYQQFMHNLNQMLPDLVRFVDLNALRQLSRIKMIKSDRVKPKSAVKKSSKSNGETD*	common_virus_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0004	persistent	direct	high	1955	0.999	GCA_003493965.1_01204
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	328072	328410	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	4083	4421	GCA_003493965_1_3_319	GCA_003493965_1_3_319	+	354286	.	COG1314	Preprotein translocase subunit SecG [Intracellular trafficking, secretion, and vesicular transport]. 	MYQVLLFIYVVVAIALIGFILVQQGKGANAGASFGGGASGTMFGSAGAGNFLTRTSAILATAFFVIALVLGNMNSHKGNIQKGAFDDLSQAAEQVQQQAAPAKDNKNSDIPQ*	mmseqs_cdd	nonviral_gene	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0005	persistent	direct	high	338	0.997	GCA_003493965.1_01205
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	328727	329953	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	4738	5964	GCA_003493965_1_3_320	GCA_003493965_1_3_320	+	354286	.	PDB:1Z19_B	Integrase	MSRTKKPLTDTEIRKAKPKEKEYPLSDGNGLILRVKPNGSKIWLFNYYHPVTKKRTNAGLGMYPQIQLSDARAKREEYRALLAKGIDPQEEKIRIQQEYENRLKDTFHSVAESYFNGIYKEKAKNPETREKNWERLKNHIFPYIGDKHVSEIKVKELVSIYEKIADRSNTLKKIHQLVGAIMDHAITKGIIESHNCRLAVKNFYIKSSTPHPTIKLDELSKLFQDLANARIGKKTYLLICWSFLTALRPKEAVNAEWSEIDFDNKLWNIPKEKMKGQADKKRPHTVPLSSQAIQLLEVMKLFSENSSFVFAGRSSKNQPMNKATVNVALKRIGYKDKLTAHGIRAFIKTFLASHKVERNVSETILSHLLEGGDDLENTYNRYNYLEERKPIMQLIGDYCESCGMNLNL*	common_virus_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0006	shell	direct	high	1226	0.999	GCA_003493965.1_01207
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	330125	331894	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	6136	7905	GCA_003493965_1_3_321	GCA_003493965_1_3_321	-	354286	.	PFAM:PF04735.11	DNA-helicase	MARLINAPHLADQPHEPYSDIFILAGRKAWQAWNNGKGEEWLLLCSLIHGLDRNIKPVILAESQLENISSIRIVKEDQQSVKLVQYGELAQAEITAICQNLAKNSNAIDVKLLDAAAQTKEDLSAYIQRLRNDKDTADFAEKIAPPEKLKEKDGTNKKSRAFQKWLNLDMALQRGCREIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIDRLIKTLKAQLPRMGEMSNDLIAFENGVLNRNTMEFESHNRQNWLTSFIPHKYDKQAADTPHFDKWLSFVSDGNKEKARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDERGLSGLENKTLILCPEQSKYAGDGSGLKSITGGDTVRVRYNYQDPFDVKITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITLEVGGIIRKVFDSFPDPNDAKNALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGVTNMGLDKIRTHLYPAYLAYTKAMNIGELGLNNFVIGVDQALKQNGNKHDFMKRHTKTGRRTNIHFKDFDSFRNEMLS*	rep_hall_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0007	shell	direct	high	1769	0.999	GCA_003493965.1_01208
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	331878	332321	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	7889	8332	GCA_003493965_1_3_322	GCA_003493965_1_3_322	-	354286	.	.	hypothetical protein	MDMNQKLDYSKLSALELKAIAMSYRNMLENKGETFHSSLPYLNGAIEVLAEELADCPAMNIDELKILHDELLMVNKHLLQMAPKPPSSNPEEIVVTLTNDEIIDGLLKNSIALSLVKTFKYFQEVITDRINAIENGVIKGVNNGTIN*	.	hypothetical_protein	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0008	cloud	direct	high	443	0.998	GCA_003493965.1_01209
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	332323	332871	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	8334	8882	GCA_003493965_1_3_323	GCA_003493965_1_3_323	-	354286	.	.	hypothetical protein	MKPSNPMQQLQQWKANNGKSNKLKNELVKSAVKSANQTNSGLVKNTQGNVGSETKNKLYANPLSFKFAQLSRQFKLILDSNRKCLEVYPDDFHHKIKFSDELTDLVVRLKTGGKLFNEMVKAQGAKLNPNNQETIRNFNQANDYLIHKFGEVIKQIEQLQVEYVNSVVLLKNEKNLIISEGK*	.	hypothetical_protein	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0009	shell	direct	high	548	0.998	GCA_003493965.1_01210
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	332858	333064	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	8869	9075	GCA_003493965_1_3_324	GCA_003493965_1_3_324	-	354286	.	.	hypothetical protein	MKAKKIKAFKAPYTPTPEQLEKSYKRIKQFLAFAEDYLHSGHYKGLAVSIEQIKKAATIRKVAQHETK*	.	hypothetical_protein	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0010	shell	direct	high	206	0.995	GCA_003493965.1_01211
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	333054	333254	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	9065	9265	GCA_003493965_1_3_325	GCA_003493965_1_3_325	-	354286	.	.	hypothetical protein	MTEQVNLPYQLIFVYDNGDQFIAGEYGTLREALQAKIRCKHEIGQADICGRVLEVISVLKGEDNES*	.	hypothetical_protein	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0011	shell	direct	high	200	0.995	GCA_003493965.1_01212
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	333247	333495	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	9258	9506	GCA_003493965_1_3_326	GCA_003493965_1_3_326	-	354286	.	.	hypothetical protein	MANRIIQVEQCQINLLKLQMDGLSQLESMLLALYINPDVFNEMDSFDIAYTIKGIKNLLSHIKIDMEERIAFIEGVQEVSND*	.	hypothetical_protein	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0012	cloud	direct	high	248	0.996	GCA_003493965.1_01213
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	333488	334426	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	9499	10437	GCA_003493965_1_3_327	GCA_003493965_1_3_327	-	354286	.	PF10554.9	Ash protein family	MNLIHKYYINNENFYNLNTLQSAVNFGIIFSQSEKVIASRGKLNYLLLANDSTPQNRAFFVRNIRTPKEYADFVFNLNPIILSMVERNEPSMTGCFPVETVFHLVTFYRPTVESLAVVPENLLLELTQMHQFIFALIRAPQIKIRLLADNEQQARSRFTDGDTLLFVGRINQNPLKNNRTLALPTLSVNNHSLPKCEDAGSIESTITRKGNRDPYQCGIFLPKIHSLHVPEKSGALSYIEFAVRLRDRNKALSTNQIRSFRGVVETVSHPMGDTSKNTKHGNPTMKIYPKNNRTLAALPTLSVSAEMEVAHG*	hhsuite_tools	hypothetical_protein	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0013	cloud	direct	high	938	0.999	GCA_003493965.1_01214
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	334532	334735	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	10543	10746	GCA_003493965_1_3_328	GCA_003493965_1_3_328	-	354286	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MNLNLNPNQKLITGETACHIVGFGRTKLNLLVKAKKFPQPIRFSQNFVRWDLEEVNQWIEEQKAARA*	mmseqs_cdd	nonviral_gene	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0014	shell	direct	high	203	0.995	GCA_003493965.1_01216
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	334894	335925	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	10905	11936	GCA_003493965_1_3_329	GCA_003493965_1_3_329	-	354286	.	.	hypothetical protein	MLLNLPPRKEYTLSQALEYLKNFHNETRINKEYLIYQAQQGRLKTVISLKGGRDFYTPTKDYRSTLEVISNHTLVDKKYFLINGETKIIATDISLKSTRELNREFDFYEMENNYLDIYFNTSKLKTMPKYPNENLIMGKKGGGEIRKIDNIQEFCFFGYFVLDPSEYEGNSVDIVQQGFICKKIYNEFEITERSETYFSFLLSYVNDGYSSFDGDFIINLDDILILHEDLLEFIGIDKRDNNEDHILEIEKLKKELEEKDKKIVELQTALEGKNFPIFLNQFMENDRLALAIQARKDYWANYDPNLNNAPKAESTAREIKEKYDLSKKQAEAIEIIACPINRN*	.	hypothetical_protein	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0015	cloud	direct	high	1031	0.999	GCA_003493965.1_01217
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	336033	336413	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	12044	12424	GCA_003493965_1_3_330	GCA_003493965_1_3_330	-	354286	.	.	hypothetical protein	MIKSVLSAFGSFVFSALDFLLFLAILLFVGLLVFIFWPILKWPLLAFLIGAIAFFCYLIYKIKEKPKPLEQDEILSSWAEQELQRPIIQQILQKQEENKPFISGTITHIGNDGKETRLGNITIHLK*	.	hypothetical_protein	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0016	shell	direct	high	380	0.997	GCA_003493965.1_01219
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	336611	336898	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	12622	12909	GCA_003493965_1_3_331	GCA_003493965_1_3_331	-	354286	.	.	hypothetical protein	MIRCKEAKQNLLLSAVKHYKKNNHTFTFISLYDNEEPYPIEEVIYALRCKCDAAKREIDSRPNSPNMEVLETIYHIAHKNLEDMKKAKSRIEQKA*	.	hypothetical_protein	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0017	cloud	direct	high	287	0.997	GCA_003493965.1_01220
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	337219	338886	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	13230	14897	GCA_003493965_1_3_332	GCA_003493965_1_3_332	-	354286	.	CDD:COG4626	Large-Terminase	MAIWHEYAEKIQSGEIVACKKIKQAVARYFNDLNNPDYFFDQSAVEKFIAFSKLCPHVKGHLRGEPIILSDWQVFLFANILGFKRKDTGLRKYRSAYVQVARKNAKSTVAAVLANWFLVMEGGQQDIYTAAVSRDQARIVFDDARQMCLLSPLLKKRLNIQQHKLINPKNNSIMRPLAAKSSTIEGTNPSLAIVDEYHLHTDNSVYSALELGQGARPEGLLFAITTAGSNVISACKQHYDYCAQILEGNEQNDSLFVLIFELDEENEIDKQENWIKANPNIGKSIPYLDFENTIKKARGIPSEWVEMLTKRFNVWCQGTTPWLGEGNWAQCERQYTESDLLHQDCYLGLDLSSTNDLTSLCYTFPQGKKVRLITRHYIPEFQLNNVANKNRAMYRNWVRSGWLIATEGDCIDYDKIRDDILKDAQRFNIKMIGFDVWNATHLRTQLQAAGLEVEPFPQTYQRFSPVAKSAEVLINRQIIEHHGDPVLTWALSNVVMETDANANIKPNKKKAANKIDPAIAFLMSFGTYQLEYGDLIFELSDEHRKIIDEFTGLDL*	hallmark_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0018	shell	direct	high	1667	0.999	GCA_003493965.1_01221
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	338894	339268	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	14905	15279	GCA_003493965_1_3_333	GCA_003493965_1_3_333	-	354286	.	CDD:COG3747	Small-Terminase	MTAKKKNLHTPPSFLDPIAKSVWKERIPQLLERGDIQDADLIHLELYCVNYSLFRAAVEDIHKNGFSIVNSQGTQSRNPALSAKADAEKVMVKMSSLLGFDPVSRRKNPVEVDSTDMIDEILTM*	hallmark_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0019	shell	direct	high	374	0.997	GCA_003493965.1_01222
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	339498	339854	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	15509	15865	GCA_003493965_1_3_334	GCA_003493965_1_3_334	-	354286	.	PDB:5H0M_A	HNH-endonuclease	MPYQPLRRCSYPGCRNKVKSGRCEEHKPKDNRPSSRARGYDHKWSKYRAQYLKHHPLCVMCLEKGIYTPATVIDHIKPVENGQADPLFWVESNHQSLCRDCHSYKTRVIDQRGFGAKK*	common_virus_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0020	.	unmatched_CDS	none	0	0	.
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	339865	340173	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	15876	16184	GCA_003493965_1_3_335	GCA_003493965_1_3_335	-	354286	.	CDD:TIGR01560	uncharacterized-phage-protein-(possible-DNA-packaging)	MAQIELEEIKQHLNLDHYLDDELLETYKVATLEVCQKHIGKTFGDEETENTVPFTPSIKVGCLMYIAYLYTNREAITDLANLKQAPMTISALWEVYREPCAY*	hallmark_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0021	shell	direct	high	308	0.997	GCA_003493965.1_01223
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	340160	340504	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	16171	16515	GCA_003493965_1_3_336	GCA_003493965_1_3_336	-	354286	.	PDB:2KZ4_A	Head-tail-adaptor	MAVMLKAGKYNKVIDLQKQVNEQNDYGGIVSKWRTISNVRAAVEPLQGREFFSGAVPLGENIVRVRVRYGIEVDRTMRVKYGTRLLEITNIIDSKESHRELQLICKELLGNGTN*	hallmark_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0022	shell	direct	high	344	0.997	GCA_003493965.1_01224
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	340488	341720	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	16499	17731	GCA_003493965_1_3_337	GCA_003493965_1_3_337	-	354286	.	CDD:COG4695	Portal-protein	MWNPFRRKEQRSEPTTIEELLSYIGVNNTGAGEFVSPQTAESLPAVMNAVTVISEAVASMPCYLYALKEDGRERIYRHPVEYLLNEMPNRSQTPYQFKNTMMRHCLLNGNAYAVIEWNNKGEPISLTPYQPSAVNIFRKVTGEYIYQITDLNGVTKNYLQDEILHLRHSSVDGFMGRSPITVCRETVGLGLAQQRHGAAIMKNGLMASGLISTAEWLDDAKAQKAVKALERYKGAKNAGKTPILEGSMEYKQLGMTNQDAEWLASRTFTISDIARIYNISPIFLQDYSNSSYANFSEASRAFLSQTLRPWLTNFEQQLKDALIIDLGSNSKKRYLIEFDTSDLLRTSQSERFSSYDVAIKAGVMSPNEVRRREGLPPYEGGDEFSQAWKQTVEVKRGDEQEQGASNGSDA*	hallmark_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0023	shell	direct	high	1232	0.999	GCA_003493965.1_01225
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	341722	342288	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	17733	18299	GCA_003493965_1_3_338	GCA_003493965_1_3_338	-	354286	.	CDD:COG3740	head-maturation-protease	MKKEFEIRSATISTDEENQKLVGYAVKWNSPSQVLYCDFVESFAPKAFSESLASGEDVRALFEHDYTKLLGRTSAGTLKLEEDSIGLRFELTPPDTTLGRDLLVSVERGDISGMSFGFWAKEETWNFDVEPCQRTVQKAELFEVTVTSIPAYPESSVEIAKRSMVAAKEKTQKHSTALLKQWLDVMEA*	hallmark_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0024	shell	direct	high	566	0.998	GCA_003493965.1_01226
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	CDS	342334	343524	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	18345	19535	GCA_003493965_1_3_339	GCA_003493965_1_3_339	-	354286	.	CDD:COG4653	Major-Capsid-protein	MLKKLIELRQQKAEKVAEMRAMLDKAEKENRSLDETESVDFDKLKDLVKQLSDEISKYETVADEERNLGAQSNPLETRSTKQFSNDELRHYIKTGELRNLTTANGEDGGYSVIPQLDKEVMKRLTDDSVMRQLCNVVRLPIGAKEYKKLVSAGGATVEHGTEGTARNGTASPKLHEVTIALNSIYAYPKTTQEILDFSSIDVLGWLTDEITETFTETEEVDLTSGDGNKKSKGLLTYERTTENDKVRPFGKLQKIEVAGAANIEADTLIDAFYTLHSKYRKNAVWVMSSTIAAALQKLKNKNGDYIWRDGLTTDAPATLLGRPVYFLETMPTGGANQAVIAFGDFKRGYFIVDHETGVRTRPDNLTEPGFYKVHTDKYLGGGVVDSNAIKVIETTA*	hallmark_hmm	common_virus	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_CDS_0025	shell	direct	high	1190	0.999	GCA_003493965.1_01227
GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote	cenote	tRNA	328437	328522	GCA_003493965.1	QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965.1_QQJF01000003.1	GCA_003493965.1|QQJF01000003.1	GCA_003493965_1_3	GCA_003493965_1_3@C11	4448	4533	tRNA-Leu	tRNA-Leu	+	354286	.	tRNAscan-SE score: 57.5	Leu	NA	tRNAscan-SE	.	C11	19535	323990	343525	GCA_003493965.1|QQJF01000003.1@region_323991_343525@tool_cenote_tRNA_0001	.	.	.	.	.	.