core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	18226	18531	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	1	306	GCA_003578345_1_22_15	GCA_003578345_1_22_15	+	40471	.	PFAM:PF06152.10	minor-capsid-protein	MKRKDFSDEANNALKLYNLSMKVSREKLLKQQLDLIVKDSTLDIQDEIENKLVDAVDREVERQAHILGEYVKIDDTEVKAVVNSNFKGVNWCLQDYGKIWL*	hallmark_hmm	common_virus	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0001	cloud	direct	high	305	0.997	GCA_003578345.1_01342
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	18498	19319	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	273	1094	GCA_003578345_1_22_16	GCA_003578345_1_22_16	+	40471	.	PFAM:PF06152.10	minor-capsid-protein	MSTRLWQDMAVVQKEVERTTSNVLLRGRHPNEYIKDFKKQTNTTTYNASRLLVTESARVQAESQKLTYLKDLGEDGEYKYVAKIDKKTSKICHSLNGKVFKVKDMIPGINAPPMHPWCRSTTVPHMGNWRDKFFTEHRSKNKVHLNDKYSFKNNIITESIANDIKDGKLKLSKQKQNRHIKGTKEYVEGKSYFTVSFKELQDSITRNLSNIDQLKYSKDGKYILKMNLDKSIGRVVNQISKKEVVTKRITLHIGKNNFHAVPAYEWSDKNERY*	hallmark_hmm	common_virus	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0002	cloud	direct	high	821	0.999	GCA_003578345.1_01343
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	19306	19503	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	1081	1278	GCA_003578345_1_22_17	GCA_003578345_1_22_17	+	40471	.	4A54_A	EDC3, MRNA DECAPPING COMPLEX SUBUNIT	MKGIELWNYARKKIRLTTIENEVIVDFVEDIFDEIDTSTGEFELCFEIYQTTIPVSYVKKIEVLN*	hhsuite_tools	hypothetical_protein	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0003	cloud	direct	high	197	0.995	GCA_003578345.1_01344
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	19661	20047	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	1436	1822	GCA_003578345_1_22_18	GCA_003578345_1_22_18	+	40471	.	PDB:6B0X_d	capsid-scaffolding-protein	MENNQNNITEETKSNENLETTHEQSQQNEKTFSQEEVSQMIKERLARERRKSEERMKDAIQEAEKLAKMNKDQKNQYELEKLLKENEELKAEKALSQMKNETHSMLNEFGVQNFDDQIVNILVKSCQQ*	hallmark_hmm	common_virus	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0004	persistent	direct	high	386	0.997	GCA_003578345.1_01345
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	20161	20439	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	1936	2214	GCA_003578345_1_22_19	GCA_003578345_1_22_19	+	40471	.	.	hypothetical protein	MSNITIHIDDQFMHKLVEDKLEKILQNYKRQYASVDIKDLVMITGLSKSTLQNKIVCEPEIVKITRRIGSRVIYLYPQVLEAYQQVITRISN*	.	hypothetical_protein	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0005	persistent	direct	high	278	0.996	GCA_003578345.1_01346
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	20761	21786	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	2536	3561	GCA_003578345_1_22_20	GCA_003578345_1_22_20	-	40471	.	COG2008	Threonine aldolase [Amino acid transport and metabolism]. 	MISFENDYLEGAHEQVLKRLVETNKIQAAGYGFDDFSAQAADKIRETIQCPDATIRFLVGGTQTNQVVINSMLKSYEGVISADTGHVAVHEGGAIEFSGHKVLAIPSSEGKISAKGVEAYLDTFYSDFKREHMVFPGMVYISHPTEYGTLYTKDELKSLAKVCKKHEIPLFMDGARLGYGLMSENTDVTIKDVAKYCDIFYIGGTKIGALCGEAIVFTKNNEPKNFTTIIKHHGALLAKGRLTGIQFLELFTDDLYFKISKHAINMAKKVKKGFLDKGYQLYFDSPTNQQFFVISNDKIKELEQKVKFAIWEKYDDNHRVVRFATSWATTEENVEELLKLI*	mmseqs_cdd	nonviral_gene	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0006	persistent	direct	high	1025	0.999	GCA_003578345.1_01347
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	22099	22305	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	3874	4080	GCA_003578345_1_22_21	GCA_003578345_1_22_21	+	40471	.	PF10957.8	Sporulation protein Cse60	MNLMQQIKFKTFTEDSLERLEKSVNDFLRSDDGSSYKLLNISIKQVEERKFPNIEEDYNAVLTLVTQG*	hhsuite_tools	hypothetical_protein	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0007	persistent	direct	high	206	0.995	GCA_003578345.1_01348
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	22366	23838	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	4141	5613	GCA_003578345_1_22_22	GCA_003578345_1_22_22	+	40471	.	PDB:2ZE9_A	Phospholipase-D	MDFGYLGTILTIILVLGFIINLVLAFVIIFLEKDRRSASSTWAWLFVLFILPIIGFILYLFLGRTVSKKKMEKNNGKELDAFQDLVKAQADSFEKLNFESTNDQVEKHHDLIRMLLMKQDAFLTENNKIDLFTDGHKLYDKVIEDIYNAKDYIHLEYYTFELDGLGKKIIDALETKLKEGLEVKLLYDDVGSKKVNMAKFKQFKSLGGEVEAFFASKFPLVNFRMNNRNHRKIIIIDGQIGYIGGFNIGDDYLGLGKLGYWRDTHLRVQGDSVDALQLRFILDWNSQAHRPQFEYDQKYFPKKTGEKGDKALQIASSGPAFDLHQIEYGYTKMIMSARKSIYLQSPYFIPDQSYINALKMAANSGVEVNLMIPCKPDHPFVYWATFSNAADLLDSGVNVYTYQNGFIHSKILMIDDEVSSIGSANMDFRSFELNFEINAFVYDKEIAQQLRQAFEEDIKKSKLLTKEKYDQRPLSIKFKEDLAKLVSPIL*	common_virus_hmm	common_virus	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0008	persistent	direct	high	1472	0.999	GCA_003578345.1_01349
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	24014	24898	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	5789	6673	GCA_003578345_1_22_23	GCA_003578345_1_22_23	+	40471	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MVIKLENLSKSFNNNKVLNDISLKLKENTCTALIGKNGAGKTTLIDILIGNIQGDEGHIVDESKMIDTNHMGVLYQKTNFPKFFKVKELFHLHQSFYKNPITLSQFISITQFNDKQMNQMASQLSGGQKRILDFALTLVGQPEFLILDEPTSGMDIETREHFWSIIEKLKQAHVTILYTSHYIEEVERMADQVVLLDQGQIQLDDSPEHIKNTQNNSIIVLPILDEGLLNDLKNAFNIKKLKNHYEIKTNQVEAVIQKLIEYKFDLNKIEIHKMSLLEIMFSGIENQRGVMTEC*	mmseqs_cdd	nonviral_gene	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0009	persistent	direct	high	881	0.995	GCA_003578345.1_01350
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	24892	25623	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	6667	7398	GCA_003578345_1_22_24	GCA_003578345_1_22_24	+	40471	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MLNTFLKTEIKIMFRKKLYLFMSIFLPVAFYLLFTSLLDLPEEAKKPFYKEYMYSMTVFSLMNFCMMSFPLDMIEERNNGWYKHLMSTPLKPVHYYLAKVLKTMCQFLVAIIIIFMVAHFYKNVNMDFTNWILSSVVLWVGASLFLTFGLVIALFNDIQKASSVANLLNIAMAIVGGLWFPVKTFPDWLQVISKKMPTYHLKQIALDLGKDKGIKFTSFGFLIFYSIIFLSIALLINKKKDVS*	mmseqs_cdd	nonviral_gene	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0010	persistent	direct	high	731	0.999	GCA_003578345.1_01351
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	25654	26724	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	7429	8499	GCA_003578345_1_22_25	GCA_003578345_1_22_25	+	40471	.	COG4585	Signal transduction histidine kinase  [Signal transduction mechanisms]. 	MGEISSLVYLIFPIFGLFDSERVSNKLIYIIALSIFTVSYLMLVLLHTKLNKNHLYILLLIHYVCIMYFVYAYEPLLSMFFFYSAFALPFVFDVGLKSKEFISYIITMIMCVLFIYIMHHDQVYMMIIYYVVILMIMFGNFQVRKDRKVRKELEEKNRYINVLIAEQERNRIGQDLHDTLGHVFASLTLKSELATKLIDTDKESAKKEMMAINQLSRETLNKIRSIVDDLKVQSFEEEVSSVETILRDANLNFIFKNKGAAKSLNPAKQSILSMILKEAINNVIKHAHATEVIGQLVEEHQQIKLIVQDNGVGIKDKEACHLRSIKERAEYLNGKVAVKSENGTTVVVTIPRGELM*	mmseqs_cdd	nonviral_gene	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0011	persistent	direct	high	1070	0.999	GCA_003578345.1_01352
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	26721	27323	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	8496	9098	GCA_003578345_1_22_26	GCA_003578345_1_22_26	+	40471	.	cd19930	phosphoacceptor receiver (REC) domain of DesR and similar proteins. This group is composed of Bacillus subtilis DesR, Streptococcus pneumoniae response regulator spr1814, and similar proteins, all containing an N-terminal REC domain and a C-terminal LuxR family helix-turn-helix (HTH) DNA-binding output domain. DesR is a response regulator that, together with its cognate sensor kinase DesK, comprises a two-component regulatory system that controls membrane fluidity. Phosphorylation of the REC domain of DesR is allosterically coupled to two distinct exposed surfaces of the protein, controlling noncanonical dimerization/tetramerization, cooperative activation, and DesK binding. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	MISLIIAEDQLMLRKAMVQLIELHEEMKVLKDVENGKEALQFIENEEPDVAILDIEIPGMTGLEILAQIRAKGLNTKVIIVTTFKRPGYFEKAVANGVDAYVLKERSVEDLVRTIYNVMNGEKEYSTSLMTSLFKESNPLTHKEQVVLREIGNGLSSKEIAEKLYLSDGTVRNYTSTIIDKLYSDNRFDAWKKATAKGWI*	mmseqs_cdd	nonviral_gene	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0012	persistent	direct	high	602	0.998	GCA_003578345.1_01353
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	27355	27534	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	9130	9309	GCA_003578345_1_22_27	GCA_003578345_1_22_27	-	40471	.	PF17412.2	Family of unknown function	MEILDCVIDTNSAIYTVKTTGGNVFHHMLSTDTPTKKVIEILTLLSDHIDKLNQTKLKI*	hhsuite_tools	hypothetical_protein	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0013	persistent	direct	high	179	0.994	GCA_003578345.1_01354
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	27734	27922	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	9509	9697	GCA_003578345_1_22_28	GCA_003578345_1_22_28	-	40471	.	.	hypothetical protein	MDSSNESKISLIAIIVAIIVGVILQIVFKLPIIVSVVVAILLGILVGFIVYLIQSTLYKRKK*	.	hypothetical_protein	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0014	persistent	direct	high	188	0.995	GCA_003578345.1_01355
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	28087	28623	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	9862	10398	GCA_003578345_1_22_29	GCA_003578345_1_22_29	+	40471	.	PDB:1RKN_A	Thermonuclease	MKSKKSLSLIVLALIAIIVIMFQLINHSGPFSKIGTNQQNQSTDLKGKDKVYVERVVDGDTFVVNKDGKEIKVRMIGMDTPETVKPNTPVQPYGKEASNYTKKALTRQNVYLEYDKEKNDRYGRTLAYVWINDKRMFNEELVEKGLAREKYYSPNGKYREVLIKAQNKAKQNKVNLWS*	common_virus_hmm	common_virus	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0015	persistent	direct	high	536	0.998	GCA_003578345.1_01356
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	28715	29587	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	10490	11362	GCA_003578345_1_22_30	GCA_003578345_1_22_30	-	40471	.	.	hypothetical protein	MSVTVILSVIIIILVIALFLNQRYMKDRVETEEYARNQLIAKNSILSEENLSLKNQMLSSNNDVGHHAFKNAKRELQKILDRFIEQGRLKSYTIIPTSNLAIKHPLFEYARSFDFIIITEVGLINVDVKNWNQKTFYHFDVPDKHAEEGSNQYNTDKVVGHYISSRYHSQFNTTRSGVYTFTEILQDNRVIYEFYDHDPYQQAANNAKALKDQIEKDYQFKIQSIGVIYFSDGSVNIIEGSDESDKYVDTVSTRSSLEKVIDEAVQLSKHPLNDNQIEEISNSFKQHMNN*	.	hypothetical_protein	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0016	persistent	direct	high	872	0.999	GCA_003578345.1_01357
GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote	cenote	CDS	29923	30516	GCA_003578345.1	QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345.1_QXRK01000022.1	GCA_003578345.1|QXRK01000022.1	GCA_003578345_1_22	GCA_003578345_1_22@C1	11698	12291	GCA_003578345_1_22_31	GCA_003578345_1_22_31	+	40471	.	.	hypothetical protein	MKLEERNAVDDLVQILMQTSSHSFKFHGVVAMQLFLNDEFKLPSKVDICVERKKLIEIIKVIPKDFSIKYYGKGHSPHQTERPSLSEVAHVEILKDNSIVLNIFVYDVVNDEWIFRLDSSIRLPKNNIYFHSLNWNVDYIKPEIVLMYDLMDNQEYHQFSNYKAVIDALSYYQFYILKLVVGEKRIEEAVINNRKTS*	.	hypothetical_protein	C1	12291	18226	30517	GCA_003578345.1|QXRK01000022.1@region_18227_30517@tool_cenote_CDS_0017	persistent	direct	high	593	0.998	GCA_003578345.1_01358