core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	115292	116560	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	1	1269	GCA_003755025_1_3_116	GCA_003755025_1_3_116	+	456305	.	PRK06635	aspartate kinase; Reviewed	MALIVHKYGGTSMGSTERIRNVAKRVAKWARAGHQMVVVPSAMSGETNRLLGLAKELTPSRITSAYHRELDMLAATGEQASSALLAIALQAEGMESVSYAGWQVPVRTDNSYTKARIESIDDKRVRADLDAGKVVIVTGFQGIDEGGNITTLGRGGSDTSAVAIAAAMKAHECLIYTDVDGVYTTDPRVVPEARRLTTLSFEEMLEMASLGSKVLQIRSVEFAGKYKVPLRVLSSFTSWDIDINEEAKSGTLITFEEDEQMEKAVVSGIAFTRDEAKISVIGVPDTPGIAYQILGAVADANIDVDVIIQNMGKEGKTDFSFTVNRNDYQRTIDLLKDKVLPQLGAEEIVGDAKIAKVSIVGIGMRSHVGVASKMFRALSEEGINIKMISTSEIKTSVVIDEKYVELAVRTLHKAFELDQAAA*	mmseqs_cdd	nonviral_gene	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0001	persistent	direct	high	1268	0.999	GCA_003755025.1_01466
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	116819	117136	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	1528	1845	GCA_003755025_1_3_117	GCA_003755025_1_3_117	-	456305	.	PDB:2KZ4_A	Head-tail-adaptor	MNAGKLDQRVTVERFTSTVDDWGTPIESWAPLFTCWAAVEPLVGREYIAAQALQSEVTTRIRMRFRPWMTAQDRVIHDGKTYNIVSVIDVRSGHRELVLMCKAIA*	hallmark_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0002	cloud	direct	high	317	0.997	GCA_003755025.1_01468
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	117133	117408	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	1842	2117	GCA_003755025_1_3_118	GCA_003755025_1_3_118	-	456305	.	CDD:cd08054	Head-Tail-Connector-Protein	MLTLPEVKLHCRIDHGDEDTLLQSMIDAATASVGDYINATEPLDATAPAPVKAAAMLLVGDLYANREALVERPLSKNPTFERLLAPYRVYA*	hallmark_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0003	cloud	direct	high	275	0.996	GCA_003755025.1_01469
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	117610	119109	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	2319	3818	GCA_003755025_1_3_119	GCA_003755025_1_3_119	-	456305	.	PDB:6Z6D_A	Large-Terminase	MSRAARIIEFIERYCVTPEGAHVGQPLVLAEFQKQFLRDVYDNPAGTRRAILGCARKNGKSGLIAGLLLAHLVGPEAKQNSQIVSGAMSREQSALVFNLASKMVQQSPKLSSLVRIIPSGKRLIGLPLNVEFRALAADGKTAHGLSPVLAILDEVGQVRGPQSDFIDAITTSQGAHEAPLLIAISTQASGDADLFSTWIDDAQRSADPRIVCHLYAAPEGCDLMDEAAWKAANPALGLFRSLDDLREQMTQAQRMPSMEATARNLLLNQRISTVSPFISPSVWKSCAGPVLPFDGPVWCGLDLSARVDLSALVVVGQVDGVWQVQSHFWTPEQGLEERARRDRAPYDVWHRQGFLRTTPGATVDYSHVAADMLEILDGLDVRGIAFDRWRVAELQRELDRLGAELPLVEHGQGFASMAPALDALEAELLNGRVAHGGHPVLTMCAANAVIVKDPAGNRKLEKSRSTGRIDGLQALAMSMGVASRATEGQSVGFTEFTFV*	hallmark_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0004	cloud	direct	high	1499	0.999	GCA_003755025.1_01471
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	119127	119540	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	3836	4249	GCA_003755025_1_3_120	GCA_003755025_1_3_120	-	456305	.	PFAM:PF05119.11	Small-Terminase	MKLTPKRKRSDSAAAAIAATQAAALPPLEPPAHVLVPPEARPFWDAIVQARPRDTWNPVDLASAANLARVQCALEAAPVGSDDHIKLTRLALALTRAIAVNTVATVGRSADIAKGAELERKARQDDGDDLIPRLRAV*	hallmark_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0005	cloud	direct	high	413	0.998	GCA_003755025.1_01472
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	119537	120103	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	4246	4812	GCA_003755025_1_3_121	GCA_003755025_1_3_121	-	456305	.	PDB:5H0M_A	HNH-endonuclease	MTRSPTFFRDARQQPPKGLDSNGNPLPEAEPRRVNGYLVKPPMRWTKDSNGRVLPLNSAAWRKLRKQVLAEEPLCRHCAAQGLTVPATEVDHMRGAADNSRDALQALCKPCHSIKTMADLYGRPARMGCDESGNPINPAHHWNQSTVEAAKGLAGDVVGDSQKSPATEDATPTGSPSFNAHCLKNRQP*	common_virus_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0006	cloud	ambiguous	low	5	0.009	GCA_003755025.1_01472
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	120100	121311	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	4809	6020	GCA_003755025_1_3_122	GCA_003755025_1_3_122	-	456305	.	CDD:pfam04860	Portal-protein	MLNRILSAIGLEKRSTIGVNGWPVPLSATAVTPESAQGVGACYAAVALIAEAIGSLPLKLYRQDGDDRKAATEHPLHTVLHRAPNGQQSATEFWEWMVSSMLLTGNAYAKVTRGFDGQVRSLDPMVTDRVTIMRKGETIAGYEYTNRDGVRERLLPAEVFHLRHRAGNDPLVGVSPIAAARAVIQLAQAEAQHGQSTFDNGTKASGIITMPGRLKPEQRQAIAQSWQSQYAGGSNAGKVPIMEEGSSFVPISLSLADSEWVASRRFSVEEVARIFKVPPVLIGDLSHSTYSNSVAMDMFFAKHTLGRHLSAIEGAINRQLLTPAAARTMYAEFSLEGLLRGASTERAAFYSSGISDGWMLKSEARKLENLPAIEGLDDEKEGGHSVPTPAPLPYPSKQQEAMA*	hallmark_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0007	cloud	direct	high	1211	0.999	GCA_003755025.1_01473
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	121305	121838	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	6014	6547	GCA_003755025_1_3_123	GCA_003755025_1_3_123	-	456305	.	CDD:COG3740	head-maturation-protease	MSTPDIERRGAVAGVTASGRTLSGYAASYNDPTAIGGFTERIAPGAFTKSLASGRDVLALLDHRADVLLGRTRSGSLKLSEDAKGLRFELSLPDTAAARDVIALAERGDLGGMSFGFVAIDEAWDGNTRELRQVELHEISVVQSWPAYQSTEINLRSRPPERSFWDCNRAWMETVKC*	hallmark_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0008	cloud	direct	high	533	0.998	GCA_003755025.1_01474
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	121843	123063	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	6552	7772	GCA_003755025_1_3_124	GCA_003755025_1_3_124	-	456305	.	PDB:3QPR_G	Major-Capsid-Protein	MQTLHAIREARSQKVNEARALLASMPTLTPEAQTKFDAIKAEIVSLEGQEARAQLVEDWERRSLGQPADKARNELEGRVSVVEVMRAQMEGRSLTGAAAEFAQESERRTGRKAQGVFVPLAALESRAVNTTVTAPEIVPTTHRADLYIQPFRNNLLARRLGVQVLSGLSGNLSIPKHATGGTTGWVAENAALPTGDMSFDSVPMAPKHAGGIQEMSRQLLQQSSPDIEALVRNDLSALLAQAIDSALIKGGGTNEPKGVLSTVGIQTANLATLSWQNILAMLQKLDISNTSAANIVASMKVKAKLQGTLKAAGIAGYLMENGRVADLPAFFSNQVPEKTGTPNTGHLIAGDWSQALLGIWSEIDLLVNPYSETAYSKGNVLVRAMATVDVAVRHPESFVVASDVAL*	hallmark_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0009	cloud	direct	high	1220	0.999	GCA_003755025.1_01475
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	123207	123539	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	7916	8248	GCA_003755025_1_3_125	GCA_003755025_1_3_125	-	456305	.	.	hypothetical protein	MTPEAILADLILCGIEPSVTPDKTGIVVPAGKLTEAQRAAVLGHKPALIACILESARVTALLLEAAMRRCDERPDSDKARQDMREEILGTPPHLRPDLLDYFLSDPGSLK*	.	hypothetical_protein	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0010	cloud	direct	high	332	0.997	GCA_003755025.1_01476
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	123536	124768	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	8245	9477	GCA_003755025_1_3_126	GCA_003755025_1_3_126	-	456305	.	PDB:3BH0_A	Helicase-ATPase	MKRGIAEHNAMASVLDDRERGPIFPELPDSPDISGLGPRDKVILTCGSDLTPEPYRWLWQYWLAMGKLHILAGAPGQGKTTIALAMAATITIGGRWPDGSRCAPGNVLIWSGEDDPADTLVPRLMAAGADRARCYFIEGARRGGEVVPFDPARDLGQLLEAIEKIGGISLLVIDPVVSAVTGDTHKNGEVRRALQPLVDLAAKCDCAVLGITHFAKGGQGTDPSQRVVGSVAFTAVARVVMVAAKVKGDEEGQDTRILARSKSNVGPDDGGFQYHLEQSEPIPGIHASHIAWGKAVEGTARELLTDPDEPQQEQSDASAKDAAIDFLVEILKDGSAPSKYVETEARAAGVSWATVRRAADTIGVTKRKMNDAWYWFRPKLLNQVAQDAQPLNDEQVEQVDEQVAQSTEVL*	common_virus_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0011	cloud	direct	high	1232	0.999	GCA_003755025.1_01477
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	124765	125229	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	9474	9938	GCA_003755025_1_3_127	GCA_003755025_1_3_127	-	456305	.	PFAM:PF01807.19	DNA-primase	MSFDRTRLPEPVSYYEGLGLAFKERRGKWRTTACNFHGGTDSLRINTDSGAFVCMAGCGARGGDVLAYHMAQHGLEFVEAAKALGAWIDDGRPATQHKPSPLSPRQALEVLAVEANLVAIAAANVAHGVVLSQVDLSRVLTASGRITRLVEVFA*	phrogs_hmm	hypothetical_protein	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0012	cloud	direct	high	464	0.998	GCA_003755025.1_01478
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	125226	125525	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	9935	10234	GCA_003755025_1_3_128	GCA_003755025_1_3_128	-	456305	.	.	hypothetical protein	MHSTNTTKVGASVPEKTKVAGGYQTTAATSKDSTPIFAWGLNENNIPPELLPKARAWFQRRMDYYAAKHGTAWADTREWIADYINEELREHLAKKGGSA*	.	hypothetical_protein	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0013	cloud	direct	high	299	0.997	GCA_003755025.1_01479
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	125535	125849	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	10244	10558	GCA_003755025_1_3_129	GCA_003755025_1_3_129	-	456305	.	COG3311	Predicted DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]. 	MKGNTTDLFFGAGGISNVYSRVLVFRNNSYERPTMPAKVTQHHQHQPDTLLRVVPHITDRMGISRSGWWKGVKDGKFPPGIKLSPRVTVWKSSDIDALIANLGK*	mmseqs_cdd	nonviral_gene	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0014	cloud	direct	moderate	213	0.676	GCA_003755025.1_01480
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	126207	127406	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	10916	12115	GCA_003755025_1_3_130	GCA_003755025_1_3_130	-	456305	.	PDB:1Z19_B	Integrase	MPKIAKQLSDRAVAAIKAEGRHPVGGVPGLHIRVTDTGHRGWVLRVKVGEARRDMGLGPYPEVGLAEAREKAREIHASLRNGIVPATPTKQRMEALVQQPVRKTFKQCAEAFMGDKSGEWKNPKHRQQWENTLEQYAFPHMGSLSVDAIDLPHVLACLEPIWRSKTETATRVRGRIESVLDWAAVRKYRSGDNPARWKGHLDKVLPSPKKVAETEHHRALPIDGMPAFMADLRQRDGIAARALEFAVLTAARSGEVRGATWGEIDLEAKVWTVPKERMKMGKEHRVPLPDAAIKLLEAMPRMEGTDLVFPGTKGQPLSDMSLTAVMRRMEVDAVPHGFRSTFRDWAGDRTNYPRDMAEAALAHKLENKVEEAYRRSDALEKRREMMQEWSKFILTPTTN*	common_virus_hmm	common_virus	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0015	cloud	direct	high	1199	0.999	GCA_003755025.1_01481
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	CDS	127649	128128	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	12358	12837	GCA_003755025_1_3_131	GCA_003755025_1_3_131	-	456305	.	COG5615	Uncharacterized membrane protein  [Function unknown]. 	MAAQCAAMLYNALKLTHVLSIIVWIGGMVFAHFFLRPAVQMLEPPQRVALMHGVLQRFLGAVAIAIVAVLTSGLGMIGAVSIGAGGAFSMPLDWTIMATLGIVMMGIFAYIYFALLSRLEQAVAASDWPAGGLALASIRTWVGVNLLIGVVIVVLTLLM*	mmseqs_cdd	nonviral_gene	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_CDS_0016	persistent	direct	high	479	0.998	GCA_003755025.1_01482
GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote	cenote	tRNA	116606	116698	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025_1_3	GCA_003755025_1_3@C7	1315	1407	tRNA-Ser	tRNA-Ser	+	456305	.	tRNAscan-SE score: 71.1	Ser	NA	tRNAscan-SE	.	C7	12837	115292	128129	GCA_003755025.1|RJVL01000003.1@region_115293_128129@tool_cenote_tRNA_0001	.	.	.	.	.	.