core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	116820	117137	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_117	318	-1	0.619	11	None	GENOMAD.123093.VP	3.035e-18	81	0	0	1	1246	Caudoviricetes	NA	NA	PF05521;COG5614;TIGR01563	Bacteriophage head-tail adaptor	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	117	1	1	318	MNAGKLDQRVTVERFTSTVDDWGTPIESWAPLFTCWAAVEPLVGREYIAAQALQSEVTTRIRMRFRPWMTAQDRVIHDGKTYNIVSVIDVRSGHRELVLMCKAIA	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0001	cloud	direct	high	318	1.0	GCA_003755025.1_01468
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	117134	117409	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_118	276	-1	0.641	11	None	GENOMAD.123958.VP	2.515e-14	69	0	0	1	1246	Caudoviricetes	NA	NA	PF05135;TIGR01560	Phage gp6-like head-tail connector protein	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	118	2	315	590	MLTLPEVKLHCRIDHGDEDTLLQSMIDAATASVGDYINATEPLDATAPAPVKAAAMLLVGDLYANREALVERPLSKNPTFERLLAPYRVYA	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0002	cloud	direct	high	276	1.0	GCA_003755025.1_01469
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	117611	119110	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_119	1500	-1	0.635	11	None	GENOMAD.148122.VP	2.628e-69	247	0	0	1	1246	Caudoviricetes	NA	NA	PF20441	Terminase large subunit, endonuclease domain	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	119	3	792	2291	MSRAARIIEFIERYCVTPEGAHVGQPLVLAEFQKQFLRDVYDNPAGTRRAILGCARKNGKSGLIAGLLLAHLVGPEAKQNSQIVSGAMSREQSALVFNLASKMVQQSPKLSSLVRIIPSGKRLIGLPLNVEFRALAADGKTAHGLSPVLAILDEVGQVRGPQSDFIDAITTSQGAHEAPLLIAISTQASGDADLFSTWIDDAQRSADPRIVCHLYAAPEGCDLMDEAAWKAANPALGLFRSLDDLREQMTQAQRMPSMEATARNLLLNQRISTVSPFISPSVWKSCAGPVLPFDGPVWCGLDLSARVDLSALVVVGQVDGVWQVQSHFWTPEQGLEERARRDRAPYDVWHRQGFLRTTPGATVDYSHVAADMLEILDGLDVRGIAFDRWRVAELQRELDRLGAELPLVEHGQGFASMAPALDALEAELLNGRVAHGGHPVLTMCAANAVIVKDPAGNRKLEKSRSTGRIDGLQALAMSMGVASRATEGQSVGFTEFTFV	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0003	cloud	direct	high	1500	1.0	GCA_003755025.1_01471
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	119128	119541	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_120	414	-1	0.681	11	GGA/GAG/AGG	GENOMAD.071693.VV	2.101e-44	158	0	0	1	1246	Caudoviricetes	NA	NA	TIGR01558;COG3747	phage terminase, small subunit, putative, P27 family	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	120	4	2309	2722	MKLTPKRKRSDSAAAAIAATQAAALPPLEPPAHVLVPPEARPFWDAIVQARPRDTWNPVDLASAANLARVQCALEAAPVGSDDHIKLTRLALALTRAIAVNTVATVGRSADIAKGAELERKARQDDGDDLIPRLRAV	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0004	cloud	direct	high	414	1.0	GCA_003755025.1_01472
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	119538	120104	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_121	567	-1	0.605	11	AGGAG	GENOMAD.112725.VV	3.677e-05	46	0	0	0	1246	Caudoviricetes	NA	NA	PF16786	Recombination enhancement, RecA-dependent nuclease	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	121	5	2719	3285	MTRSPTFFRDARQQPPKGLDSNGNPLPEAEPRRVNGYLVKPPMRWTKDSNGRVLPLNSAAWRKLRKQVLAEEPLCRHCAAQGLTVPATEVDHMRGAADNSRDALQALCKPCHSIKTMADLYGRPARMGCDESGNPINPAHHWNQSTVEAAKGLAGDVVGDSQKSPATEDATPTGSPSFNAHCLKNRQP	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0005	cloud	ambiguous	low	4	0.007	GCA_003755025.1_01472
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	120101	121312	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_122	1212	-1	0.612	11	GGAG/GAGG	GENOMAD.044975.VV	1.816e-18	91	0	0	1	1246	Caudoviricetes	NA	NA	PF04860;PF11367;TIGR01537	phage portal protein, HK97 family	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	122	6	3282	4493	MLNRILSAIGLEKRSTIGVNGWPVPLSATAVTPESAQGVGACYAAVALIAEAIGSLPLKLYRQDGDDRKAATEHPLHTVLHRAPNGQQSATEFWEWMVSSMLLTGNAYAKVTRGFDGQVRSLDPMVTDRVTIMRKGETIAGYEYTNRDGVRERLLPAEVFHLRHRAGNDPLVGVSPIAAARAVIQLAQAEAQHGQSTFDNGTKASGIITMPGRLKPEQRQAIAQSWQSQYAGGSNAGKVPIMEEGSSFVPISLSLADSEWVASRRFSVEEVARIFKVPPVLIGDLSHSTYSNSVAMDMFFAKHTLGRHLSAIEGAINRQLLTPAAARTMYAEFSLEGLLRGASTERAAFYSSGISDGWMLKSEARKLENLPAIEGLDDEKEGGHSVPTPAPLPYPSKQQEAMA	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0006	cloud	direct	high	1212	1.0	GCA_003755025.1_01473
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	121306	121839	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_123	534	-1	0.629	11	None	GENOMAD.118669.VV	1.194e-34	132	0	0	1	1246	Caudoviricetes	NA	NA	PF04586;PF04860;K06904;COG3740;TIGR01543	Phage head maturation protease	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	123	7	4487	5020	MSTPDIERRGAVAGVTASGRTLSGYAASYNDPTAIGGFTERIAPGAFTKSLASGRDVLALLDHRADVLLGRTRSGSLKLSEDAKGLRFELSLPDTAAARDVIALAERGDLGGMSFGFVAIDEAWDGNTRELRQVELHEISVVQSWPAYQSTEINLRSRPPERSFWDCNRAWMETVKC	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0007	cloud	direct	high	534	1.0	GCA_003755025.1_01474
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	121844	123064	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_124	1221	-1	0.611	11	None	GENOMAD.022088.VV	9.146e-31	129	0	0	1	1246	Caudoviricetes	NA	NA	PF05065;COG4653;TIGR01554	Predicted phage phi-C31 gp36 major capsid-like protein	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	124	8	5025	6245	MQTLHAIREARSQKVNEARALLASMPTLTPEAQTKFDAIKAEIVSLEGQEARAQLVEDWERRSLGQPADKARNELEGRVSVVEVMRAQMEGRSLTGAAAEFAQESERRTGRKAQGVFVPLAALESRAVNTTVTAPEIVPTTHRADLYIQPFRNNLLARRLGVQVLSGLSGNLSIPKHATGGTTGWVAENAALPTGDMSFDSVPMAPKHAGGIQEMSRQLLQQSSPDIEALVRNDLSALLAQAIDSALIKGGGTNEPKGVLSTVGIQTANLATLSWQNILAMLQKLDISNTSAANIVASMKVKAKLQGTLKAAGIAGYLMENGRVADLPAFFSNQVPEKTGTPNTGHLIAGDWSQALLGIWSEIDLLVNPYSETAYSKGNVLVRAMATVDVAVRHPESFVVASDVAL	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0008	cloud	direct	high	1221	1.0	GCA_003755025.1_01475
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	123208	123540	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_125	333	-1	0.649	11	GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	125	9	6389	6721	MTPEAILADLILCGIEPSVTPDKTGIVVPAGKLTEAQRAAVLGHKPALIACILESARVTALLLEAAMRRCDERPDSDKARQDMREEILGTPPHLRPDLLDYFLSDPGSLK	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0009	cloud	direct	high	333	1.0	GCA_003755025.1_01476
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	123537	124769	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_126	1233	-1	0.624	11	GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	126	10	6718	7950	MKRGIAEHNAMASVLDDRERGPIFPELPDSPDISGLGPRDKVILTCGSDLTPEPYRWLWQYWLAMGKLHILAGAPGQGKTTIALAMAATITIGGRWPDGSRCAPGNVLIWSGEDDPADTLVPRLMAAGADRARCYFIEGARRGGEVVPFDPARDLGQLLEAIEKIGGISLLVIDPVVSAVTGDTHKNGEVRRALQPLVDLAAKCDCAVLGITHFAKGGQGTDPSQRVVGSVAFTAVARVVMVAAKVKGDEEGQDTRILARSKSNVGPDDGGFQYHLEQSEPIPGIHASHIAWGKAVEGTARELLTDPDEPQQEQSDASAKDAAIDFLVEILKDGSAPSKYVETEARAAGVSWATVRRAADTIGVTKRKMNDAWYWFRPKLLNQVAQDAQPLNDEQVEQVDEQVAQSTEVL	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0010	cloud	direct	high	1233	1.0	GCA_003755025.1_01477
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	124766	125230	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_127	465	-1	0.671	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	127	11	7947	8411	MSFDRTRLPEPVSYYEGLGLAFKERRGKWRTTACNFHGGTDSLRINTDSGAFVCMAGCGARGGDVLAYHMAQHGLEFVEAAKALGAWIDDGRPATQHKPSPLSPRQALEVLAVEANLVAIAAANVAHGVVLSQVDLSRVLTASGRITRLVEVFA	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0011	cloud	direct	high	465	1.0	GCA_003755025.1_01478
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	125227	125526	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_128	300	-1	0.613	11	AGxAGG/AGGxGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	128	12	8408	8707	MHSTNTTKVGASVPEKTKVAGGYQTTAATSKDSTPIFAWGLNENNIPPELLPKARAWFQRRMDYYAAKHGTAWADTREWIADYINEELREHLAKKGGSA	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0012	cloud	direct	high	300	1.0	GCA_003755025.1_01479
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	125536	125850	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_129	315	-1	0.562	11	None	GENOMAD.208815.VC	2.142e-05	44	0	0	0	1	NA	NA	NA	PF07618;COG2452;TIGR01764	Predicted site-specific integrase-resolvase	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	129	13	8717	9031	MKGNTTDLFFGAGGISNVYSRVLVFRNNSYERPTMPAKVTQHHQHQPDTLLRVVPHITDRMGISRSGWWKGVKDGKFPPGIKLSPRVTVWKSSDIDALIANLGK	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0013	cloud	direct	moderate	213	0.676	GCA_003755025.1_01480
GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	genomad	CDS	126208	127407	GCA_003755025.1	RJVL01000003.1	GCA_003755025.1|RJVL01000003.1	GCA_003755025.1_RJVL01000003.1	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407_130	1200	-1	0.616	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad	GCA_003755025.1|RJVL01000003.1	130	14	9389	10588	MPKIAKQLSDRAVAAIKAEGRHPVGGVPGLHIRVTDTGHRGWVLRVKVGEARRDMGLGPYPEVGLAEAREKAREIHASLRNGIVPATPTKQRMEALVQQPVRKTFKQCAEAFMGDKSGEWKNPKHRQQWENTLEQYAFPHMGSLSVDAIDLPHVLACLEPIWRSKTETATRVRGRIESVLDWAAVRKYRSGDNPARWKGHLDKVLPSPKKVAETEHHRALPIDGMPAFMADLRQRDGIAARALEFAVLTAARSGEVRGATWGEIDLEAKVWTVPKERMKMGKEHRVPLPDAAIKLLEAMPRMEGTDLVFPGTKGQPLSDMSLTAVMRRMEVDAVPHGFRSTFRDWAGDRTNYPRDMAEAALAHKLENKVEEAYRRSDALEKRREMMQEWSKFILTPTTN	GCA_003755025.1|RJVL01000003.1|provirus_116820_127407	GCA_003755025.1|RJVL01000003.1@region_116820_127407@tool_genomad_CDS_0014	cloud	direct	high	1200	1.0	GCA_003755025.1_01481