core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2082689	2083810	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	1	1122	GCA_003939355_2_1_2062	GCA_003939355_2_1_2062	+	3199829	.	COG0418	Dihydroorotase [Nucleotide transport and metabolism]. 	MLNHLSVNVVTIFTLYALLFVLFLSLKFTLNTITLLQPDDWHAHLRDGLALKRTVPDLAKQFARAICMPNLVPPVKTVEEAVAYRERILAHVPEGLNFDPRMVLYFTDFTSPDEVRKIKESEFVNAIKLYPAGATTNSDNGVSDIRKVYAVIEQLEEHQVPLLLHGEVTHNHVDIFDREKRFLDEILSPLLKQFPKLKVVLEHITTSDAANFVLEQDRNVAATITPQHLLFNRNDMLVGGVKPHFYCLPILKRQTHQTTLLEVATSGSPKFFLGTDSAPHAQNAKENACGCAGCYSAPNAIELYAQAFDQVGKLERLEGFASMFGADFYGLPRNTSTITLVKEENTVAESFDYLDGQKIIPLHAGKTLQWRKV*	mmseqs_cdd	nonviral_gene	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0001	persistent	direct	high	1121	0.999	GCA_003939355.2_02085
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2083807	2084460	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	1119	1772	GCA_003939355_2_1_2063	GCA_003939355_2_1_2063	+	3199829	.	PDB:5M1S_D	DNA-polymerase-III-subunit-alpha	MTHEENQAPVIGQRFRGFLPVVVDVETAGFNSQTDALLEIACIPIVYDQQGQFIPGPAFHAHINPFEGANLDRRSLDFIGIDPFNPMRVAMAEDERGALRRIFKSLNEVRKAQHCTHAVLVGHNAHFDLGFLQAAIARSGTKNQNPFHSFSVFDTVTLSAVMFGQTVLARACIQAGIEFDGKEAHSALYDTQKTAELFCYILNKLSPHLLDSLVTEP*	common_virus_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0002	persistent	direct	high	653	0.998	GCA_003939355.2_02086
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2084499	2084786	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	1811	2098	GCA_003939355_2_1_2064	GCA_003939355_2_1_2064	-	3199829	.	PFAM:PF10078.8	transcriptional-regulator	MLKDIIELCKIRFGSYEKMAEKLDLDPTVISHWKTGKRKPNHIHIMQMADFIGYDRYHVLCLVMEEIDTKNAELWRSWRPYGDSNPGYRRERAMS*	phrogs_hmm	hypothetical_protein	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0003	.	unmatched_CDS	none	0	0	.
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2084914	2085081	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	2226	2393	GCA_003939355_2_1_2065	GCA_003939355_2_1_2065	+	3199829	.	.	hypothetical protein	MIKTEQTYKPELTKEELLNLARILDTASFNFEKCAGDLLDKLVATFPKELADFEG*	.	hypothetical_protein	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0004	cloud	direct	high	167	0.994	GCA_003939355.2_02088
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2085085	2085693	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	2397	3005	GCA_003939355_2_1_2066	GCA_003939355_2_1_2066	+	3199829	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MKVLVACEYSGRVRESFAKLGHDVLSCDLLPTEIDGNHYQGDVRDLLYQDWDLMIAFPPCTRLTNSGVRWLHVPPSGKTKQQMWADLDSAADFYKLLRDAPIPKKAIENPIMHCYAIERINPGIRQIVQPHWFGDAAFKATGFELIGLPELIPTNKLVPPEKGDPEYKSWSKVHLASPGIDRWKDRSRTFPGIALAMAEQWG*	common_virus_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0005	cloud	direct	high	608	0.998	GCA_003939355.2_02089
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2085697	2085942	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	3009	3254	GCA_003939355_2_1_2067	GCA_003939355_2_1_2067	+	3199829	.	.	hypothetical protein	MTELELQCYEKLAKDLYDKGRSYIEEGNACTDIVSVLFSIEELVLKELEATTITALCDDLDQANNSLIETLKQFGGYNHVI*	.	hypothetical_protein	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0006	cloud	direct	high	245	0.996	GCA_003939355.2_02090
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2085932	2087269	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	3244	4581	GCA_003939355_2_1_2068	GCA_003939355_2_1_2068	+	3199829	.	PFAM:PF02486.18	Replication-initiation-factor	MSSNGIHSNRPTFSTFPLWGKLFSDVSNNPLSNTGEKIADAQKLLTQLRKSQIENIVTIEDQDEKQIITAQFDAEIKRVIETLQLGYRDYPLLDTKMVINDRGEAVHQLFRRPATNELVVTDFLNFTIHKSTFDSVKKEKLKIYNKINDNDQGFKLDSLFTDSDYAYACGEVIQDIFGFGISSKMPNGLNYYKHAYTLENNCGFICIGGQNDTIMVSINGLGCTIGKYGWEEDLHAWFKLFATRPKITRLDLAFDDFESDFASVNWAKEQHEIGGFKMGGRPPKFNIIGDYWSPDGSGSTAYIGTRTSSKMCRIYEKGKQLGQKDSPWTRVEVEYKAKDMHIPLDALLRPTQHFLAAYPCFHGFDYATKPCKFETIKKAADITWEKAISVTRHQFGKYLSAFRSFYEDDSLLLDILTEQKHEYPKRLKELYLNYLSSMPPASLPA*	rep_hall_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0007	cloud	direct	high	1337	0.999	GCA_003939355.2_02091
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2087312	2087602	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	4624	4914	GCA_003939355_2_1_2069	GCA_003939355_2_1_2069	+	3199829	.	PFAM:PF07459.10	RstB-protein	MKFTTDVVITGAKSYNNTIDGVPHNFTKLFVMTDLSDQSGVGQATVEYKWGTSDNYKKIQDKDFPFTAKAAMEIVTTGTRQSTIVHDITPVAATAK*	common_virus_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0008	cloud	direct	high	290	0.997	GCA_003939355.2_02092
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2087613	2087810	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	4925	5122	GCA_003939355_2_1_2070	GCA_003939355_2_1_2070	+	3199829	.	.	hypothetical protein	MANLELEKVLEAAWAKGFAFGKYTQDIPLSQDIIGLLENSNYLMNEYMLEFRNAVKSGMLETLRG*	.	hypothetical_protein	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0009	cloud	direct	high	197	0.995	GCA_003939355.2_02093
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2087825	2088025	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	5137	5337	GCA_003939355_2_1_2071	GCA_003939355_2_1_2071	+	3199829	.	.	hypothetical protein	MTYVCKELQQIDNVQTCVLWVEQVTLNDMFGITTAQAATIGLASALVLVVAAVFNKLGQIGDKSHD*	.	hypothetical_protein	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0010	cloud	direct	high	200	0.995	GCA_003939355.2_02094
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2088018	2088275	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	5330	5587	GCA_003939355_2_1_2072	GCA_003939355_2_1_2072	+	3199829	.	PDB:2IFO_A	Filamentous-Major-Coat-protein	MTEQQKLGLAQVQVKKQSRFQTYLNRGAVVATVATATGAASAAYDVTEILDNLALAVTAAATIGVAWLGFTAGIAIWRNLRAAAK*	hallmark_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0011	cloud	direct	high	257	0.996	GCA_003939355.2_02095
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2088387	2089670	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	5699	6982	GCA_003939355_2_1_2073	GCA_003939355_2_1_2073	+	3199829	.	PFAM:PF05616.12	attachment-protein	MKSIIKLFICLSLIYTPFFAFAGAAEKWEVLENNYDHVSNKVKIEARKITQSAANSGVYKVQVPVNASTLGSTVKMMLKGGVASAALYGLVEGVGWIIDEGSKTIKKPSETQPSTAYQYIWGGYITSEYETFSSPEEYKSKYEKTFPSYVYVSQKYEIITTDVHRVTFSYKPDKDSSYLITPGVVRTTNPNYIPGTTIYTEVSDSELGNEITGNGQNTSPVPEIITDAYSPNNPVEHAPAPQQTQDALDNANPEPEKEPSGETKPKPNTDTDGDGEPDTHDPTQPDQGTEFQLPNFCSWAPAVCDFFTVQKADNKEIKKNQREQIEQDKTFFEKVTEWFDWSQADDDLPDNESPDIVEHVTPDLKEDAISWGASCPADVSIPISMQGVTSTLVFSWSPWCQLLSIIKPAIVASAYIGAAFIVLGLRT*	common_virus_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0012	cloud	direct	high	1283	0.999	GCA_003939355.2_02096
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2089667	2089945	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	6979	7257	GCA_003939355_2_1_2074	GCA_003939355_2_1_2074	+	3199829	.	PFAM:PF10734.8	Minor-Head-Virion-Protein	MKAILFGLTSWLLSNFAKKVLVGAGVTIVSGAVINIILTTYINKAISASNQIDSTYLGLLSISGLDHAISIIIGALIARATLLAANLSFKKA*	hallmark_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0013	cloud	direct	high	278	0.996	GCA_003939355.2_02097
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2090017	2091168	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	7329	8480	GCA_003939355_2_1_2075	GCA_003939355_2_1_2075	+	3199829	.	PFAM:PF05707.11	Zonular-occludens-toxin-(Zot)	MLILITGKPGSFKTAKCASLAIDYLKAGRRVFTNIDEFNYEGVEKLPDNDDWTNTPIGSVVIYDEAQQFEFLQYKGREKLSSDHRVKELEVHRHTGHDIILITQSPSFLHNHVLSLVGEHYHLHRAYGRSYADVFLWRYTAHSPDSTGAKNKAESHTKFKPDAKIFDKYKSTEVDTHKLKIPPLYFKLGGFLAGVLLLIGYMVFGSDNPFLSASKIKENADIASGKKQQETLVSSQAASVTTDKIQSNLDVECRKGVNVEKPECVDWFNNLSKNGGSVGSTDKIQISYNPNKPYDTQLPDDYTIAVNDYPRLSGCMTLATGKLTGIDQQGNYMPNISQSDCRKYINGYRPFDYSKPMQQTAQPQQILQDTKIEATQATNNVAT*	hallmark_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0014	cloud	direct	high	1151	0.999	GCA_003939355.2_02098
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2091778	2092605	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	9090	9917	GCA_003939355_2_1_2076	GCA_003939355_2_1_2076	+	3199829	.	PDB:1Z19_B	Integrase	MNIKDIMYFYTKNGLFQSKHSYQDKIKYIEWFYQYDEITIDVLTDYCTFRQLSGVKNSTINRELNVIKSAFNYYLKYNQTANFKNVFNRFKLFEDDFIPRYLTAVECHELLQETMRHNNHMLHDFVVLALNTGCRASELTTLTWNNVFLHDRYFIIRNSLSKNKKTVYKPLNTVSIAAFYRLKKHKHYVFYNNSTDSHIKSFRRGFEIAVKRADLGAVRIHDLRHTFASFLVKQGVPLYHVSTLLGHSDIRITQRYSHLAPENLHHVLKHLPTLT*	common_virus_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0015	cloud	direct	high	827	0.999	GCA_003939355.2_02099
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2092857	2093540	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	10169	10852	GCA_003939355_2_1_2077	GCA_003939355_2_1_2077	+	3199829	.	cd03189	C-terminal, alpha helical domain of GTT1-like Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pombe GST-III is implicated in the detoxification of various metals.	MQIRLFHLQNSRSQRIVWFLEELGLPYELVINHHSDLDEKKNSPHQLSKFSAVEIINQEQIFILAETSAIIDYLSYLYPQLGQSKLLGSQLQSFYYWKNYCEATFIPDLLLKQIFHQIVQRTPFPVRFVSKFLKYGFDQSYLNPSLQQQMTMIDKHLKDHLWFAGNQFTVADILMWFPLLACSANDHQFKHIQRYLAQIENRPAFKKSLIKGQWSASTFQSYWTIAW*	mmseqs_cdd	nonviral_gene	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0016	persistent	direct	high	683	0.999	GCA_003939355.2_02100
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2093546	2094790	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	10858	12102	GCA_003939355_2_1_2078	GCA_003939355_2_1_2078	-	3199829	.	cd04733	Old yellow enzyme (OYE)-related FMN binding domain, group 2.  Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction.  Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	MSQIADSIQIRNTTFKNRIIKGAMSEALANHEGQPNDLHIGLYEAWAKGGLGCAITGNVMVNIAAKNEPGVVAIETERDLAKLQQWAAVGKKYGMVQLIQLSHPGRQCPKGLNKETVAPSAVPFSPMLATMFGTPRELRHEEILDIIQRFATAAAVCEKAGFEGVQLHGAHGYLISQFLSPLTNKRTDEWGGSIENRMRFLIEIYKAVRAATSENFIISVKLNSADFQRGGITEEDVIAVFKAIDAAGIDIIEISGGTYEAPAMAGAKAESRKASTIAREAYFLEFAEKIRQHVTCKLMVTGGFRTVAGMNAALESGACDFIGIARPLAVETDLTNSLIAGNDVRYAVNQIKTGIPFVDKMAIMEIIWYAAQFKAIGQGKKPNPKLSPLLVFLNYAKGNIKAVVKGRVNSRKSA*	mmseqs_cdd	nonviral_gene	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0017	persistent	direct	high	1244	0.999	GCA_003939355.2_02101
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2094903	2096489	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	12215	13801	GCA_003939355_2_1_2079	GCA_003939355_2_1_2079	-	3199829	.	PDB:4M4W_K	Replicative-helicase,-DNA-primase	MKHLTQNNNIALLKVQKLSIENQSGTKLVDNFNFELHHSQTLAIVGESGSGKSITCLAILGLLSDSLKVKGEILFDGVDLLKMNQHQWQQTRGKKIGMIFQEPMTALNPLHCVEKIVGENLLLQGLCKSEVKERTLELLNEVGLEEATHLLKRFPHELSGGQRQRVMIAMALALEPEILIADEPTTALDVVLQRQILDLLKQLQHHHKMAILLISHDLSVVKQYADQVLVVNQGRIEQQGDINEIFQHPKNEYTKSLLHHDFGIALEQNSGKTLLEIQNLSVRYPIRKGLFNQIKQYKTAVSNISFSLMSGEALGIVGQSASGKTSLALAIARLIPSEGEINFETHNLNQLNQKQLRPLRQQFQIVFQDPLSSLNPRLSVFQIIAEGLELSAVKSNLIENMIDEVLMKVELTPSEKFKYPHELSGGQRQRVALARALVLKPKLLILDEPTSALDRITQQAIILLLRRLQHQEQISYLVISHDLQVIKSLCQNVLVMHEGKALEYQASQDLFRDPQNEYTKLLIEASCI*	common_virus_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0018	persistent	direct	high	1586	0.999	GCA_003939355.2_02102
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2096464	2097474	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	13776	14786	GCA_003939355_2_1_2080	GCA_003939355_2_1_2080	-	3199829	.	COG4239	ABC-type microcin C transport system, permease component YejE [Secondary metabolites biosynthesis, transport and catabolism]. 	MSPLMRNRLYRFKQNKLGFFSLILFLIIFSLSICAEFIANDKPLLVSYKQSLYFPIFKDYPETTFGGVFETSTDYQDPAVKQLIQHHGWMISPTVAFSYQTPNLSLTVPVPSQPTLQNWLGTDDQGRDVFARILYGLRVSLLFGIGLTIAAACIGIVVGAVQGYYGGWIDLIGQRLLEVWGGLPMLFIVMILVSMFSPNVYWLFLIMLLFGWTELVGLVRAEFLRARNFDYVRAAQALGVKDHNIIFKHILPNAISSSLSQIPFMLTANIIALTALDFLGYGLPADAASLGELLLQGKNNLDAPWLVLSGFFTLAIVLSLLIFIGEAAREAFDPKQ*	mmseqs_cdd	nonviral_gene	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0019	persistent	direct	high	1010	0.999	GCA_003939355.2_02103
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2097474	2098544	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	14786	15856	GCA_003939355_2_1_2081	GCA_003939355_2_1_2081	-	3199829	.	COG4174	ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism]. 	MLHYILKRMILMIPTLFFILLINFIIVQIAPGGPVEQAIQQIQNAQGLGVNPNNSNTLGELAQYEGARGLSPEMIEKIKAQYGFDQPAYERFWIMLKAYLTLDFGTSFFKDKTVVQLLYEKLPVTLSLGIWSTFLIYMIAISLGISKAKKNGLLFDRATSLLLAISYAVPSFVFAIVLVVFFAGGSYWQWFPLQGLVSENFEHLSFIGKVKDYLWHMCLPIISMVLGSFAALTYLTKYSFVEELNKPYVLTARSKGLNENQVLFRHVFRNAILIVVAALPETLVGIFFVGNLFIEIIFNLDGVGLLGFEAITQRDYPVIFGTLFLFTFFGLILRLIGDVLYHWIDPRIDFESRGGR*	mmseqs_cdd	nonviral_gene	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0020	persistent	direct	high	1070	0.999	GCA_003939355.2_02104
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2098569	2100407	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	15881	17719	GCA_003939355_2_1_2082	GCA_003939355_2_1_2082	-	3199829	.	cd08497	The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine.  The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.  Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators,  and unorthodox sensor proteins involved in signal transduction.	MLSLSTTQKLSLFGLSFFAQTAFAALQTTPYLAMHVQPKYANFSVMPYADVKAPKGGLFSQSTLGTFDNLNSMNGKGSATEGVNYLFDSLMDRSLDEPRVMYPLLAEKVTYDPDNLKFVIFHLNPKARFNNGQALTSDDVKFTFDTYQTKANFGLQMYLSDLAKTEILSKHQIKFIFKSNKNVEMPLIVASLPIYSKADWKNRDFTRITLQPIIGSGPYIVDRIDAGRSITYKSSPNYWAKDLAVNQGRYNFDRLKYVYYRNLEVSFEGFKSQQFYFYEEKNIRNWVMGYNFPSYRSGWVKKYKAQLSTPLDIQSLVFNTRRSPFQDIYFRQALTYAYDFEWQNKALFFNQNRRLQSFFDNTDLAAVSKPSSAELKILKPYLAKLHPIIQQGVVADWRYPKSDASGFNRNNLLHAQTILKQAGYKIVNGKLHDPQGRLIQIELLLQQENPQRELMPFVRNLKRLGIQVNLRQVDVPQYMERIRRQDFDMMVFKMPQTLTPGKEQAQFWGSRAANEANNYNYAGIQSPVIDQIIGKIIAAKSRDEVVLYTRILDRLLRAGYYHILTYGKPDRWFAYWDIYQQPKTKPKLSVGWEYWWVDAKKAKMLNQSSIKH*	mmseqs_cdd	nonviral_gene	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0021	persistent	direct	high	1838	0.999	GCA_003939355.2_02105
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2100414	2103659	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	17726	20971	GCA_003939355_2_1_2083	GCA_003939355_2_1_2083	-	3199829	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MYKSTTLVWQQSATSLFKITVLTSALAALGITTGCSSTPQSSKVSSSKQLGSGYLDASSLDSLEDLLSATDMRAVEGDRLLVLKHGDVWKRMTVGFKMDLNHWDSRIEAQRGWFISRQPYLDRLSARASRYLYHTVKEAERRGMPTELALLPVIESSYDPAATSSAAAAGLWQFIPSTGRIYGLQQTSLYDGRRDVVESTRAAYEFLGSLYNQFGSWELALAAYNAGPGRIQQAINRNKAAGLPTDYWSLKLPQETMNYVPRFLAVAQIIKNPSAYGVALPPIANRPHFREVSLSAPLDLNQISSITGLSRAELYALNPAYRGETVDPTSPMRILIPADLSPSIDAKLRSGKSSSSGFWASNQTPPAMNNTLSTSTTTRTSTGQAISPSTKTPPPLTASTTTRPTSTTTTKMSTPKGADALASFAAAADVPSAPRIPVAITPAPNVKPVNIEPPISLKEREQIVAAVKDEGEKKTVAQVLEPQPTQAEKDQVVAEIKAIAPKGTEIVDPFDGKIKLTAIQTSQSVADEKGQEVTKGFAYPKNLVEDETTANSDDAKRNQGKPYIKTDTDVVVVAPKGKRSTYVVLPGDTLAVIAQKNGVNWRDIAQWNQIDPNGTLFVGTSLYLYDAKPQAEVVKATENKPDSYVVQSGDSLTNLAARFDLSIKQLADFNNLSVTDGLFVGQKLSLKEPKNSIRSSQQSSREIDKVSTNKKVATKSYTVKRGEYLKLIADRYALSNQELADLTSGLTATSNLMVGQKINVPLHEVSKVDEPTESNAKVNYSNVTASTSYKTENYTVQRGDTLSSIASKSKITLSELADLNNLKSNSGVRLGQTLKIPAGSSVPEQYVVQSGDSLNAIAGKYDLSVNYIADLNGLERTAGLRVGQRLKLAGDAPSKSSNVTATKVKDKDETAPDIYTVKSGDTLSNIASRYYLQLDYVAALNGLSRNSTVRIGQKLKLSGDVPKTETAKVESSKTSSKSVSSKNTEKYTVKAGESLNSIANRFGMSTRELADLNDLKANAGLQRGQTISVPKVVTEYKVKRGDTLIGLASKYGMETSALAEMNDLTPSTQLRIGDVIKVPNL*	common_virus_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0022	persistent	direct	high	3245	1.0	GCA_003939355.2_02106
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2103942	2105288	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	21254	22600	GCA_003939355_2_1_2084	GCA_003939355_2_1_2084	+	3199829	.	PDB:1JL1_A	RIBONUCLEASE-HI	MSQTITLYVDGACKGNPGLGGWGAYIITETEEHKIYGGELETTNNRMELTAAIEGVSFCPVDAHLIIWTDSNYVKQGITEWIHGWKKKNWKDVKNPDLWKKLDAVCANRNIEWNWIKGHAGHPGNEMADQLANMGAEQTAKQSSKMTQANADTKKPESDWLLDDPFGLDLDAEADELIEEIEIDLQVTEQIEENIEVKSVNESSNPYIVITDAKLNLQGPRQLILDTETTGFYYQDNDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSVDVHGITDEFLADKPKYAEIADVLFEFLKGAEIIAHNATFDMNFLDMEFKRAGLPALSEVCEVTDTLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDMDALSQTEQQQNKTTRQRVQIHLPIIYPTDDELQQHETWVKQFEEKHGKPCFFAK*	common_virus_hmm	common_virus	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0023	persistent	direct	high	1346	0.999	GCA_003939355.2_02107
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2105415	2107061	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	22727	24373	GCA_003939355_2_1_2085	GCA_003939355_2_1_2085	+	3199829	.	.	hypothetical protein	MSYQTSIHFDPTALLIIKNEIDNSIKLVETAVNTLAEEQALPFGIDDALNQFEQCTNVLALIDIPHLSQITQYSAELMRKIMAQPEQIKTSDVVALSEGTTMLKRYIEFICLREVKVPQFLLDTLNRLEKALGKPITKEGQTIQPLLDCFTPNFDLPKAPDLEKSQYVHQLYKLCLNKLIKQAETPLDLQGLKLVAVYMAGLASGLPSQQYWQLVNVGLGHIEDLLITEARLRTFIKIETNIGQFLANPNAFQTDLNDLADILSICISQEDDLSHHIREQLNIGDELLSDTQLQVLSRHLYGPDYETIHTISQLMTDEMAQIRNEIEYNHENMSAEKTQELQQKLHQLSNVFKILNLNEAAKELTQQAEKLSQTNTLTDAASVQHLMNSILASMNSIGILERNYTSSRLQLRVNNMQISLDRLDEAHKALLSETKTLIETLTQTLSLYAQDSTAHNLESLPIYLKELSGAALFLGSTAQQTALLGAVQFAEHRLTQNETFEAEHINCILNVVAGLDLLVDNLKNKQPVLQSMFDVALSNSQQLQSAAA*	.	hypothetical_protein	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0024	persistent	direct	high	1646	0.999	GCA_003939355.2_02108
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2107061	2107813	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	24373	25125	GCA_003939355_2_1_2086	GCA_003939355_2_1_2086	+	3199829	.	COG2816	NADH pyrophosphatase NudC, Nudix superfamily [Nucleotide transport and metabolism]. 	MTQLSLAYIFQHQKLLVDENLQLPQVEKLASDLPIHHDDQVIARDLLDDEPIPEGYQLVPIRELIQSWDTSDFLQASRAVQLLEWRRNHKFCSHCGHMTEVHSREYAMVCPACGYHQYPRVQPCIITVITKGSDEILLAKSAHNKSNMYGLIAGFVEVGETLEEAVQRETLEEVGLKLKNIRYMSSQPWPFPSNLMIAFHAEYESGDIELQVEEISDAQFFKFNELPEIPFKGSIAHSMITQIIGQKKAS*	mmseqs_cdd	nonviral_gene	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0025	persistent	direct	high	752	0.999	GCA_003939355.2_02109
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	CDS	2107831	2108703	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	25143	26015	GCA_003939355_2_1_2087	GCA_003939355_2_1_2087	-	3199829	.	COG0657	Acetyl esterase/lipase [Lipid transport and metabolism]. 	MKQLIQQVQENVTRAKSFYQEFRLYDLASYSINYLTPKDTFEKEEHLAYGLKARHRLDLYRTKNPKKQRPLIVFVHGGSWQHGNKRDYLFVGESFAREGFDVAVINYQLAPEQIFPAFVDDLAQAIHYLNQNQAKLNISTENIILMGHSAGAFNVMSVVYSPYAQNFKYTDKIKAIVGMAGPYHFDYKDDPLSEHAFDQHVPYKQVMPYYFVNPNKIKHYLLMAENDQLVGSHNTFDLDKALREKGNHSHVMVIPKTGHITIVATLASFVSHYFKTKRTIMHFLEEALED*	mmseqs_cdd	nonviral_gene	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_CDS_0026	persistent	direct	high	872	0.999	GCA_003939355.2_02110
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	tRNA	2084480	2084555	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	1792	1867	tRNA-Glu	tRNA-Glu	+	3199829	.	tRNAscan-SE score: 57.5	Glu	NA	tRNAscan-SE	.	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_tRNA_0001	.	.	.	.	.	.
GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote	cenote	tRNA	2092635	2092693	GCA_003939355.2	CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355.2_CP078042.1	GCA_003939355.2|CP078042.1	GCA_003939355_2_1	GCA_003939355_2_1@C164	9947	10005	tRNA-Ser	tRNA-Ser	+	3199829	.	tRNAscan-SE score: 24.2	Ser	NA	tRNAscan-SE	.	C164	26015	2082689	2108704	GCA_003939355.2|CP078042.1@region_2082690_2108704@tool_cenote_tRNA_0002	.	.	.	.	.	.