core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	460	804	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_1	345	-1	0.354	11	AGGA	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	1	1	1	345	MILDEIATARRAYYFLKSYKSLHTLAERKNEHGAFKDKAVELVTEIEAYKDNLDEVKREIFANLFIKKPKETKKLCDLYKVLCIDKIEYRRLKTEILLDFAKKYRDGVLLVFEA	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0001	shell	direct	high	345	1.0	GCA_003942415.1_01187
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	1464	1829	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_2	366	-1	0.369	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	2	2	1005	1370	MTELSRKKEIFLANYLMTGNVKKASEMSDITRKTAYNYLNDATFKRIYRERRSEQFKEATTLLQNASVEAVNVLREIMNDKNISPYARQQSAQTILNMAYKSVETIEVMEQIEILEARLPE	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0002	cloud	direct	high	366	1.0	GCA_003942415.1_01188
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	1847	2113	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_3	267	-1	0.315	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	3	3	1388	1654	MVRSLKERLKRLQEYASKTEYATTDECISLYMDCLRFAFQQDEIKIDMDDFIKTPFKDIRLSDYKKSKKRMDELREMTGISEFPEFDK	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0003	cloud	direct	high	267	1.0	GCA_003942415.1_01189
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	2178	2417	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_4	240	-1	0.329	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	4	4	1719	1958	MIDKELEETIREVEEERRQKEFIENINKKLDRLVSNQEEAELNEKAKEFKKMGYLERVDLLNSDPDLYNKLRDKAKSGL	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0004	cloud	direct	high	240	1.0	GCA_003942415.1_01190
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	2423	3019	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_5	597	-1	0.355	11	GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	5	5	1964	2560	MPTLQEVKNQMDKVRTQLEIFDRFDEEIEKAEKEVKAIKSKKADVQTFEDFQAINAKEKYIADMKAQRTKLEKERIDSIVADARKINALGYLETALEQDETVKRQRQEIKKKSIELLELIANYNENYKNTAKRLADEVRETGIEELFDRLNTSPEYSGVSKPYIYSGIAGYMGNQHRYLDPKDDLAYFVNRVNIFEGE	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0005	cloud	direct	high	597	1.0	GCA_003942415.1_01191
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	3106	3261	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_6	156	-1	0.308	11	AGGA	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	6	6	2647	2802	MEIQNGFIYFKNYGKIRLLEIPKFGSVTLKIQDGEIVSSVESKTTQYKKEY	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0006	cloud	direct	high	156	1.0	GCA_003942415.1_01192
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	3265	3426	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_7	162	-1	0.340	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	7	7	2806	2967	MNFVTEKELTVALDSLNEWMAENPDLKLIHLSLSKCNEKEVTLVVEYVDLRKG	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0007	cloud	direct	high	162	1.0	GCA_003942415.1_01193
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	3786	5240	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_8	1455	-1	0.390	11	AGGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	8	8	3327	4781	MNSNDIVNKIIDEDQQQLPPTMVDLTQARETDEEHNSLNLTPKTKGKGFAVTLDNLKKILSGDSKLKGAIQYNSFTYEIDVTKPLKLNGRILDGVIDDLIIREIRVYIATKYKIDYKKTDIADMLEVVAGEHSYNPLKSYLEGCESEYKQLVNQRGPFEILRYYLNIEDNEYNRIIMDLFFRGAVAKVFYPTVKFDFVLDLTGQQGVGKTQFFEGLFTHKYFTTVETFTDKDDKARMVRNWCVFDDEMVASKKASFSELKKFITETKLEYRPPYASSDRRLPKSFIIVRATNDHDYLNDLTGERRFLVAEVHKDTAYKGRKWTEKDRRAFWGAMVVAWKSNQSLTLTDEQEKLVNDVRSRYKFVDETLEDLERYLDIPYPKRMYQFPITDRTRYYYIHDMMNNGCHVGSNGKEIPLDTDKYGELVERDKVAVNLFFSEVYLNNSPNPKDKNKVKKIMQNKEGWESRKSLRFGKTIKRGFAKIED	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0008	cloud	direct	high	1455	1.0	GCA_003942415.1_01194
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	5233	5748	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_9	516	-1	0.380	11	AGGAG	GENOMAD.075584.VV	5.08e-101	323	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	9	9	4774	5289	MRVIELTVQTDKLPLFGFLKSNPTQVWKNGEHYKFTYYEPIDEALTGFQYKDLYVSIKDEKEEVEGWELVRDLKMALASQELLTILKDLEVNKLTEQRQGLGMELKGWIFDLICNGIYTKNETSLFVRLLFVNGYSFSQLVDLFSAIVKRKDLASYFLEVARIFYKEVAFE	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0009	cloud	direct	high	516	1.0	GCA_003942415.1_01195
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	5757	6023	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_10	267	-1	0.341	11	GGAGG	GENOMAD.177906.VP	6.075e-27	105	0	0	0	1246	Caudoviricetes	NA	NA	PF09035;COG3311;TIGR01764	Predicted DNA-binding transcriptional regulator AlpA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	10	10	5298	5564	MTLFSRETELEFLGKIDDHLHKRMELEKQRDDNWDIISRPDLLKKLGISGTTLNNWEKKGLKPLRSPFESSKKVYYRKSDVYNFLAVD	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0010	cloud	direct	high	267	1.0	GCA_003942415.1_01196
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	6020	6256	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_11	237	-1	0.363	11	GGAG/GAGG	GENOMAD.098213.VV	2.135e-40	143	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	11	11	5561	5797	MTKDKHFDLAKSRAENFGQWLNEAFQTMLDFSLEDKFDCYSIEEKNQLERVLETLTDFSDMWDKGQIILISKEREVTE	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0011	cloud	direct	high	237	1.0	GCA_003942415.1_01197
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	6270	6473	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_12	204	-1	0.392	11	GGAG/GAGG	GENOMAD.068563.VV	3.532e-30	113	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	12	12	5811	6014	MNELDLTNTQAIIFPMVLIVLLVYLNRLDRQKSAKIERESKQTIETPSEGLNPDYGRYIQLTGKRYN	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0012	cloud	direct	high	204	1.0	GCA_003942415.1_01198
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	6475	6675	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_13	201	-1	0.443	11	AGGAGG	GENOMAD.072874.VV	5.445e-33	121	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	13	13	6016	6216	MTLDLDNMTQAEFDEVIADIKATRPNLFQFIADFVDRKVSTEEVGDYLKMERSDQVDYIKNYKARA	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0013	cloud	direct	high	201	1.0	GCA_003942415.1_01199
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	6672	7253	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_14	582	-1	0.369	11	3Base/5BMM	GENOMAD.083515.VV	4.438e-88	287	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	14	14	6213	6794	MFSENVGDYPRNNARTIAKILYKKRQLKAHQGNYTNTETEEKNMAETTYENLTRRIDRISAEMREISEENGLRSLSLLASQTKSIKEDLSRLLWIELPELNERHKIEAVSKSTTGMLFHPGIFEMDAMRQAFFKRQAKHFFDNEAEQQAYIEHAEKEYLEATITLKDILFNSKNANREVSKDHLIEKFEEAMQ	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0014	cloud	direct	moderate	453	0.778	GCA_003942415.1_01200
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	7442	7627	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_15	186	-1	0.366	11	AGGAG	GENOMAD.128666.VV	1.968e-11	59	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	15	15	6983	7168	MNFKEFKTWLDDAVSMAEAMGLPENKAVLDDLIENTANNLAFIAELVESRQLIYRKPRHED	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0015	cloud	direct	high	186	1.0	GCA_003942415.1_01201
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	7768	7956	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_16	189	-1	0.407	11	AGGAGG	GENOMAD.081367.VV	2.579e-16	73	0	0	1	1246	Caudoviricetes	NA	NA	PF06892;TIGR00721;COG3620;K22299	DNA-binding protein, Tfx family	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	16	16	7309	7497	MLITVEIAEKIRAKRGKLSLTKSQTATALGIARSTLCKIESGNYKAPKRIYEAVMNWLVEDL	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0016	cloud	direct	high	189	1.0	GCA_003942415.1_01202
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	8119	8622	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_17	504	1	0.333	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	17	17	7660	8163	MKNRLKQLRKQNGISLKKLSQKLNELYGVTISDSQLSYYENGKRSPRDESVWEYIAYFFDVPVGYLLGYKDDIELIMTGTDEEQKVYDSRSSPYLQKNLNFLKDIEEVKKIKTDTLIAIKFVENIFSRLSQYGRVKPGSYASEMNHISLALLDFLDELERVENSLTK	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0017	cloud	direct	high	504	1.0	GCA_003942415.1_01203
GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	genomad	CDS	8781	9944	GCA_003942415.1	RJMX01000015.1	GCA_003942415.1|RJMX01000015.1	GCA_003942415.1_RJMX01000015.1	GCA_003942415.1|RJMX01000015.1|provirus_460_9944_18	1164	1	0.365	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad	GCA_003942415.1|RJMX01000015.1	18	18	8322	9485	MKITEYKKKNGTTVYRASVYLGVDKLTGKKARTTVTAKTKTGVKIKAREAINAFASNGYTVKDKPTITTYKELVKVWWDSYKNTVKPNTRQSMDGLVRVHLLPVFGDYKLDKLTTPILQQQVNKWADKANRGEKGAFANYSLLHNMNKRILKYGVAIQVIQYNPANDVIVPRKQQKEKSTVKYLDNKELKQFLDYLDSLDQSNYENLFDVVLYKTLLATGCRIGEALALEWSDIDLENGVISINKTLNRYQEINSPKSSAGYRDIPIDRTTLLLLKQYKNRQQIQSWKLGRTETVVFSAFTEKYAYACNLRKRLNKHFENAGVTNVSFHGFRHTHTTMMLYAQTSPKDVQYRLGHSNLLMTENVYWHTNQENAKKAVSNYETAINNL	GCA_003942415.1|RJMX01000015.1|provirus_460_9944	GCA_003942415.1|RJMX01000015.1@region_460_9944@tool_genomad_CDS_0018	cloud	direct	high	1164	1.0	GCA_003942415.1_01204