core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	80850	81245	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_71	396	-1	0.306	11	GGAGG	GENOMAD.054988.VV	1.866e-26	106	0	0	0	1246	Caudoviricetes	NA	NA	PF05263;TIGR01636	phage transcriptional activator, RinA family	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	71	1	1	396	MLTKGQLDRLDEELDRYKNIENKIFLRRQEIIYNKKFTEHSSSSNKISNPTENTIIRLESDIVLRNLELFKEIVELLLEKLTPEQKILFKMHWLGEQLTWEEISERLDRPVRRIKKQRRAIIEAYANMINL	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0001	cloud	direct	high	396	1.0	GCA_003942525.1_01408
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	81628	82197	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_72	570	-1	0.284	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	72	2	779	1348	MELDLSKYPLQELYKRFEEVEQKEANVSKFEKTVLDEKVKLQNFEGFSLDDLESLINGNEVISHDQLNLLTKKLESVSRELKDIKTIFQSEVPIYIHFETRRRFRKSGLEASYKKTIKHIIMEFEKLRSIEKEVQEINDKIVKEISNKHSLSGCRTELELNAITPLFKPEVSGEIYLNSEIKKAKEFLK	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0002	cloud	direct	high	570	1.0	GCA_003942525.1_01409
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	82209	83069	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_73	861	-1	0.326	11	AGGAG	GENOMAD.133594.VV	6.672e-18	87	0	0	1	1246	Caudoviricetes	NA	NA	PF04586;COG3740;K06904;TIGR01543	Phage head maturation protease	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	73	3	1360	2220	MKIDLKNKKEKLENYIRSIGYETTGLELKSDQALIDQAIIDSYKQDEKKDLVSLIDIIEVTSKEGKYEEIDLDKVGMIEIGDTLGGNRDKEAKTDFLEVDYKMKTFGGFLNLSKEQIDDGMYNLDSFLGNSIAKLERKTMNKGIGEVLTLATAKSIASINDIKDLVALVNPEREVSIVVTNSLFNHLEKMVDSSGLPILKVNKQDGTSETFYTDHFVVVDDTTLGNAGDKLAFVGDMKNYAKLFKYNQTSVKWVTDLKTYSERLALYTRFDVKKVQPTLGYFATWN	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0003	cloud	direct	high	861	1.0	GCA_003942525.1_01410
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	83132	83353	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_74	222	-1	0.324	11	AGGAG	GENOMAD.110684.VV	1.971e-16	74	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	74	4	2283	2504	MERNVFPDYVVGAKFSMDPEKRKKIFSNCKKSDKNLNKRKREILEKYVKPQQQSETRADDLESSESSKGQDNR	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0004	cloud	direct	high	222	1.0	GCA_003942525.1_01411
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	83434	83604	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_75	171	-1	0.263	11	GGAG/GAGG	GENOMAD.096366.VV	1.959e-09	53	0	0	0	1246	Caudoviricetes	NA	NA	PF13128	Phage-like element PBSX protein XtrA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	75	5	2585	2755	MEENKLKKYLEEGYILFYKNGTIEVEKAPMFGDINLSYSDGKLNLLTKRETKKYVY	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0005	cloud	direct	high	171	1.0	GCA_003942525.1_01412
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	83892	85484	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_76	1593	-1	0.340	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	76	6	3043	4635	MNVKGALEIIKQEEQSNIIPFKKPPEEVRKLNTFVNWKKAVREYLDKFNNERLKSLIEKGATEEGAKKEIDKPLSHTMVASIMLELFNFCRIDSEEGVSPIYIYDPDKGIYINDLEFLKDIINVIEYRHNERRANDCIYSLRRQTPRKQLEDNLNYIIVGNGIYNRTTKQLEPFTPSKIYTSKIKTNYNPNAQRVNIKGWDFESWLLDLFSGDKSLYQLALQLLHACIRGESLGKMFWFIGEGGTGKGTLQELFINLVGRENIASIKITDLDVNNRFTLAQALGKRAVIGDDIQQKALIKDTSKLFSLVGGDTVSVEKKGKDAYSAYIKTVVIQSTNEMPRLDGDKNAIMRRMVILPFQRVFSDGIKKPNRAIKYDYIKRKEVLEYVLKLVIDLEFDEFIQPKISRKYLLDYQQSLDTIQQFADELFQDIQSTFLPNDFVWWRFTGFVEFHNHQSSYTSQGLNKKFEKYLPSEWRKTKYPITIPKGQELPKGFKPKEDTPNYQNKTYRFTPSKTVRGYEKTTTEHTHEIH	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0006	cloud	direct	high	1593	1.0	GCA_003942525.1_01413
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	85481	85996	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_77	516	-1	0.333	11	AGGAG	GENOMAD.075584.VV	4.472e-25	104	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	77	7	4632	5147	MYRQVILFLQEQKIQDFEFLKEAPTRVYKKNEWYAFIYYEPMGENLTEQVSPKMLIQVVTNSKELENRGWKLVRNFPISKLQGDLLEFLQLYEVYKFRSYKNGYGLEFNGPLLEFVAYGLNDRTEVSTFLKMMVGAGYDLEIIIQIFSNIVKKKSLARDFVELINRYEVSV	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0007	shell	direct	high	516	1.0	GCA_003942525.1_01414
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	85981	86136	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_78	156	-1	0.314	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	78	8	5132	5287	MEVRYYEPSKDFNKAVYNAPFNLLLLPLGTDEETEKKIIEHFEEVKRCIDK	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0008	shell	direct	high	156	1.0	GCA_003942525.1_01415
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	86143	86409	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_79	267	-1	0.341	11	GGA/GAG/AGG	GENOMAD.177906.VP	7.932e-17	76	0	0	0	1246	Caudoviricetes	NA	NA	PF09035;COG3311;TIGR01764	Predicted DNA-binding transcriptional regulator AlpA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	79	9	5294	5560	MELLSKEIQLEWLQTQKETLETLVNLEMERKGKLDLITREELKEALGVSGETLRNWEMMGLQRFQTPMERARKVYYRPSDIYLFLSVR	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0009	shell	direct	high	267	1.0	GCA_003942525.1_01416
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	86423	86614	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_80	192	-1	0.292	11	GGAG/GAGG	GENOMAD.063913.VV	1.232e-09	54	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	80	10	5574	5765	MNEWNLPIDKTIILLVILFKIVWKIWNRPSPIKLVEEKEKVEVSKGLNPDYGAYVWLAGKRFN	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0010	shell	direct	high	192	1.0	GCA_003942525.1_01417
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	87076	87330	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_81	255	-1	0.341	11	AGGAG(G)/GGAGG	GENOMAD.081064.VV	3.533e-38	137	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	81	11	6227	6481	MDNHEEFKTITNSKGLPIPRYLKDFKKLVEKDRELAEYLYMNYKELESDDLGAYLGMVEQGISWILDLIESKDLLYKPKSGKKT	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0011	cloud	direct	high	255	1.0	GCA_003942525.1_01418
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	87377	87565	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_82	189	-1	0.328	11	AGGA	GENOMAD.128666.VV	9.836e-05	40	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	82	12	6528	6716	MDTKISFTDFKEFIDTTTFEAENIILPPEKGMLVKWADDNAQAWKMIQEMLENGELKYTPQK	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0012	cloud	direct	high	189	1.0	GCA_003942525.1_01419
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	87657	87854	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_83	198	-1	0.333	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	83	13	6808	7005	MKNNMRLLLAKQRKKTSDVAEATGISKSTLTALYYERAKSPTIDTLKKVSSYLGVTIDEFLNVND	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0013	shell	direct	high	198	1.0	GCA_003942525.1_01420
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	88058	88699	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_84	642	1	0.290	11	None	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	84	14	7209	7850	MNRLKELRLNKKENGKVGVTQQEVADKIGVTKRTYIYWEKNERQIKPEKAQQLADYFGVSVGYLLGYEEYYNIENEALDSFKNIKKLLLTNPDLKKIILEYNESKRKQGKWDLSLVTTTDTIPLIEQNIIDLILKEFPETLEEESEEVKGTPTNNVTNTYIALSFLPLLFKDFLCSFLTLSTSDKKLVMELVSTLYDKDHGIALLKEYNEDNS	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0014	cloud	direct	high	642	1.0	GCA_003942525.1_01421
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	88970	89938	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_85	969	1	0.277	11	GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	85	15	8121	9089	MSKPFKTITEQIELLHKRGLIITDYKRAKKYLLTNNYYSIINGYSKYFEQSPNKYIPGTNFSEITYSYFYDKEIKYSFLKAILEAEKHIKSITAYVFSESFASTPYFYLDLKNYNHLKKGNISTIKFVIQQMVKIIDKHKSSITTNRIQHYFSKHLEIPFWVIIDYLTFGDMLALLKVLPNSLQDKISKMLYSFICEHIKINKTFTRAMLITFVENIGEIRNVCAHDNRLFSFKCRKSVKYYPDLHSNYGISNYSYAKSSPYHVFLVLQCFLSSIEYAKLHNTLLSRFKTFEKHLHTVPIDLFLSELGFPTNWHKTTARLPQ	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0015	cloud	direct	high	969	1.0	GCA_003942525.1_01422
GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	genomad	CDS	90289	91452	GCA_003942525.1	RJNG01000005.1	GCA_003942525.1|RJNG01000005.1	GCA_003942525.1_RJNG01000005.1	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452_86	1164	1	0.360	11	AGGA	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad	GCA_003942525.1|RJNG01000005.1	86	16	9440	10603	MNIKTVVKKNGRTVYRASVYLGVDKLTGKKARTTVTASTKTAVKIKAREAINTFANNGYCAKNKPSITTYRELVSLWWDSYKNTIKPNSQQSMEGIVRLHILPVFGDYKLNSLTTPIIQQQVNKWADRANRGEKGAYANYSFLNNINRRILQYGVTMQVIQHNPARDVIIPRKQQAKKQKIRFFSNQELKKFLAYLDSMDLNLYENLFDYVLYKTLLASGCRIGEVLALEWSDINLKTGTISISKTLNRYQETNTPKSKAGLRDIEIDPATISLLKQYKKRQQVECWKLGRSENIVFTPFTTKYAYACLLRKRLQGHFKSAGVPDISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNITMTLNTYVHATKEGAKKAVSIFETAISNL	GCA_003942525.1|RJNG01000005.1|provirus_80850_91452	GCA_003942525.1|RJNG01000005.1@region_80850_91452@tool_genomad_CDS_0016	shell	direct	high	1164	1.0	GCA_003942525.1_01423