core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	58192	58776	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	1	585	GCA_003942565_1_2_47	GCA_003942565_1_2_47	-	240525	.	PF06042.11	Nucleotidyltransferase	MNTMKNKQEILDVFRENPDIMAILPIIRNLGLKDSWLAAGSVRNFIWNLLSDKSPFDHETDVDVIFFDPDISYEETVTLENKMREDFPQYRWELKNQVYMHQHSPHTAPYTSSRDAMSKYPERCTAVGLRLHADTTLELFAPYGLEDIFNFHVSPTPHFLDNEDRMKLYQERLSKKNWQEKWKNLTFSKNLRKI*	hhsuite_tools	nonviral_gene	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0001	shell	indirect	.	.	.	GCA_000234015.1_01701
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	58757	59755	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	566	1564	GCA_003942565_1_2_48	GCA_003942565_1_2_48	-	240525	.	PDB:1SXJ_A	Clamp-Loader	MSRILDNEIMGDEELVERTLRPQYLREYIGQDKVKDQLQIFIEAAKMRDEALDHVLLFGPPGLGKTTMAFVIANELGVNLKQTSGPVIEKAGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGAGEGSRSVHLDLPPFTLIGATTRAGMLSNPLRARFGITGHMEYYAHADLTEIVERTADIFEMAITHEAAAELALRSRGTPRIANRLLKRVRDFAQIMGNGVIDDVITDKALTMLDVDREGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRSGRVATAKAYEHLGYEYNEK*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0002	persistent	indirect	.	.	.	GCA_000160875.1_01124
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	60312	60503	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	2121	2312	GCA_003942565_1_2_49	GCA_003942565_1_2_49	+	240525	.	.	hypothetical protein	MSVDIKAIRWLLDNATAYAISKNCGVSIQAVDKYKNGVSDIMNMRLKHAISMTSYAHILQGKQ*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0003	cloud	indirect	.	.	.	GCA_018127725.1_00881
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	60598	61563	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	2407	3372	GCA_003942565_1_2_50	GCA_003942565_1_2_50	-	240525	.	COG5263	Glucan-binding domain (YG repeat)  [Carbohydrate transport and metabolism]. 	MDIDTSRLRTDLPQIGEQPYRQIHAHSTGNPNSTAQNEADYHMRRPVDSGFFSHVVGNGRVMQTWYTDMGAYDVGGGWNVEGYGQVELIESHSTKEEFMRDYKLYVELLRNLADEAGIPKTLDSDSLAGIKTHQYCTYNQPRNASDHVDPYPYLAKWGISREQFKKDIEGGLSEAGWRQNASGWWWEESDGSYPTKTWKQIKGEWFYFNERGYCLINRWFNDGKDWFYLDKRGAMVTGWMFLNHRWYFFKSDGRMATGWVKYRETWYFMEEKDGYMLSKQFVKSGDGWYYLKANGELHTDPAFKTEPDGLITVVDKEKEEK*	mmseqs_cdd	nonviral_gene	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0004	shell	indirect	.	.	.	GCA_000960085.1_01771
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	61563	61982	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	3372	3791	GCA_003942565_1_2_51	GCA_003942565_1_2_51	-	240525	.	PFAM:PF05105.11	Bacteriophage-holin	MKIELFNFFRSLIQTEDGLVLYALGLIVILEIVDFASGTFAAIANPEIEYKSKIGINGLIRKILGVLLLMVLIPMSVLLPEKTGFAFLYSIYLGYLLFTFQSLIENYRKLKGNVTIFQPIVKAFERLSGDKNDKNEGEQ*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0005	cloud	indirect	.	.	.	GCA_025909465.1_00978
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	61992	62627	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	3801	4436	GCA_003942565_1_2_52	GCA_003942565_1_2_52	-	240525	.	PF07104.11	Protein of unknown function (DUF1366)	MAINGYNLSTKPYLRISGSNVETVVEIQLSEGNRYSTNSRSFTGDRTNEPEDVLIQAVLDILKAELDPGSAIVKTQAQLEQAEQQIAHNKSEQDRLAQVIKQTEENAKVNQKVIHVLVLNSIMSKNIEYGTTYKELVELIQPAEVGKTYLQHDLITIEDPEHVEVNGEGKRILVQLNKEFTYNGEPVSAFVTNGSLEQNGTGVAWKFEGKE*	hhsuite_tools	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0006	cloud	indirect	.	.	.	GCA_023110315.1_01101
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	62630	62830	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	4439	4639	GCA_003942565_1_2_53	GCA_003942565_1_2_53	-	240525	.	.	hypothetical protein	MNEEQLNKVLSMTLDDMLVDSKASMLRHNLLKIQLVEKEVENQKLQARVDELEALLNEQTKPAEGA*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0007	cloud	indirect	.	.	.	GCA_000223235.2_00053
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	62811	66251	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	4620	8060	GCA_003942565_1_2_54	GCA_003942565_1_2_54	-	240525	.	PDB:3GS9_A	tail-protein	MLYLLNKDVRTVRWNGDPLHEATSAIVKETMNGDFTLTVKYPISDSGIYQLIQEDMLIKAPTPVLGAQLFRIKKPVEHNDYLEITAYHISDDVMQRSITPVSVTSQSCGMALSRMVQNTKTALGDFSFNSDIQDRRTFNTTETETLYSVLLDGKHSIVGTWEGELVRDNFAMTVKKSRGENRGVVITTHKNLKDYQRTRNSQNVVTRIHAKSTFKPEGADKETTIRVTVDSPLISSYPYINEKEYENNNAKSVEELQKWAQAKFSNEGIDKVSDAIKIEAYELDGQVVHMGDTVNLKSWKHNVDVFKKAIAYEFDALKEEYISLTFDDKAGTGGSRASGGLSSAADAILGVTGTAQEIALEKALQNADLDFDHQAGLLRQEILDGIELARAKAEEVKRELSDTINQRFDNFDNASIQEAKRRAEEALRNAGASSLLAQEAKQISEQATADITKLKNEVVDGYVGKNTYQEGIRGIERRIEEVKTSTNGQIATQIAEYKQSVDGRFTSLSSQLDGKANLVDFQRVQETSKLYERIIGSNENDISNKVARMALTNQLFQVEVAKYSTVGGPNMLRNSRADDGLKYWTEANGRLNFTAHSFYFNGQKRMFELRPGAIVKSPRFIIKRNTDYTLNILGFDNNSKFFRVYVSKRVKGSVADFQQRLLIFNGQPKWVDGPVFDNTKTVKKSITFNVGEFDECYLQFEYDRNNPNKWGGLFMTELDFYEGTTDRRWQPAPEDATLETDKTLEATQTKMTQLAGSWAVQNINSAGDIISGINLGSNGQNRISGKATHITGETLIDNAVIKSAMIDKLKTANFEAGSVTTTILDAEAVTADKLRVDQAFFNKLVANEAYLSQLFAKQAFINRVKSITIDASQVQSGVLSGDRIYGGTITGSNIYGGTLTGHTKIQLGSYGSFDTTNGGLQINVPRSHNTKDGLGVQFIGSYGRGEDVPYGLFIYKDSDFTTGGYASDSNEFLLTVRGYIKAKGIGWLKTGNGRIDGGTTGTIGLWNSDNVYLSFGGSSNDIYYSYNSTAYSLWSVINKHFSDRRLKDNIVDCKHKALDYIHQFQFKEYDWKKQEDRPQQAHTKIGLIAQEVQAVDPTLVYENGDTLNLDNLRLTNIALKAIQELALENKKLTQRLENLENERRTT*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0008	cloud	indirect	.	.	.	GCA_024295645.1_01732
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	66252	66974	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	8061	8783	GCA_003942565_1_2_55	GCA_003942565_1_2_55	-	240525	.	PDB:2X8K_A	Distal-Tail-Protein	MVKHNELVIDGVRTSSFPFKVIVHDSPSIALGDSKTALLEHGGISGAIVQTNKHRELVKKTYTIYLVKPTEEQMNQFMSLFIREKFWLESERVKTTRLWCYKVNVSDLEEVKPGLYMTKATFTCHPTKYFKDTDTQRLTRSGTLTVQGSALAFPKITIVGQSTSETSFTIAGQVIRLERLTESLVMVNNPDNPSFKTTTGKPVKWSGDFITVDPAKLKNVGVVLGPGIQSLEIETVWGWA*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0009	cloud	indirect	.	.	.	GCA_019929785.1_00223
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	66968	70126	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	8777	11935	GCA_003942565_1_2_56	GCA_003942565_1_2_56	-	240525	.	UniProtKB:R4KJ43_9FIRM	Minor-tail-protein	MAGNIKGIKIEIDGDTQPLQKALKNVNKAATDASQELRQIDKALKFDTGNVTLLTQKQEVLQKQVATTKEKLETLRQAQSQVEQQFKNGDIGADQYRAFQREVEVTQNVLKGYEGKLASVNQALSGNGQATENNISKLNNLQNEQSQLASEMEKVTSSFKLQESALGSNASEAERNALAQKKIGAQSDIVNKQISNLERQLELTKKEFGENSTQANKMESELNQAKTALNHLNNEMNQTKSSADNAQDGMTAMSNTIRAEALQRTSEKLAELSQKILEVGASSIEAAAQIQASNAQFTTVFGDMEAQAKESLNAIGQEMDIVPERLQGSFTQMASFAKTSGLDTAQALDLTSRATRAAADGAAFYDKSIESVSESLQSFLKGNFANDAALGISATETTRNAAANKLYGKSFKDLSEAQKQLTLLQMVEDGNKLSGALGQAQREADGLENVMGNLKQSGTNALAVIGQPILEMLIPVFQALGKIVNQVATWFSNLSAPIKQAIIVFVGILAVVGALLPIFLAVQVAAAAMGTTVLGLIGAFAPIIGIVLGVVAVITLLIIGLKELWENNETFKNFVINTWESIKSAISSAIHSILEIVQTIWNALLALWKKNQDTIYNIASTVWNAISTVILTVVQAISTVVQDVWGILTNWWKANQEDILKTASYVWNIMSYLITLAITGIDKVIQDVFGGMIAWWETNHTWIMEIVNTVWGAIQTAISTAIQNVSDFIISVFGGITEWIDENQALIESTFKIVWDTISTIIGTTINIITTVIQVAMEYLVPYFEAMWTNMQTSVSLVWEVLKTVVQTAISVIQGIITAIMQVINGDWSGAWETIKNTMSVVWEAIKSIVSTVISSISSIISTAWQGISTTIGNIMNGISSTVSSVWNGIKSSIGSAINGAKDLVSTAINAIKGLFNFSISWPHIPLPHFSVSGSANPLDWLSQGVPSISIEWYAKGGIMTKPTIFGMNGNNLMVGGEAGNEAVLPLNDKTLGAIGRGIAQTMGGTSPTINITITGNTVREESDISRIADEVAQRIADELQRKTQLRGGVAW*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0010	cloud	indirect	.	.	.	GCA_026782365.1_01090
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	70403	70822	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	12212	12631	GCA_003942565_1_2_57	GCA_003942565_1_2_57	-	240525	.	PFAM:PF12363.7	Tail-assembly-chaperone	MRKIVLVGDQEYELGTNGYTPIAYKQQFGKDYFQDLFSMLKNQSFMNELNKLEAEKELTATDIDISMLEEFDMTFFNRLFWTFAKSANPHIKPYEQFFMEMEVFPIQEVGPVLMEMLNASMTTKKHQMTQNQLAKKSSQ*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0011	cloud	indirect	.	.	.	GCA_000215385.2_00945
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	70834	71412	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	12643	13221	GCA_003942565_1_2_58	GCA_003942565_1_2_58	-	240525	.	PFAM:PF04630.11	tail-tube-protein	MTQENKVTFGLKNVHVAPIKSIGADGVIAYDEIFRFPGAMELTLDPKGESTPIKADDIDYHFMNSNEGYEGKFKISHIIEMFATKILGEIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKTRHVLYYCSASRPGNGSKTKNGTNVNERELGFKASPRPLDSVVKRSITSADNKEIYDNWFKKVYEPTAVVA*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0012	shell	indirect	.	.	.	GCA_000019005.1_00070
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	71424	71747	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	13233	13556	GCA_003942565_1_2_59	GCA_003942565_1_2_59	-	240525	.	PFAM:PF05657.10	tail-completion-protein	MKLSDFAAILEQANLPVTYRAFKTGNAPDLPYLVYYESSPAINAADNTVNHQIKSATVELAFERKDEDLEERLEELWATHELFFEVQEETFIETERLYVKSYTVYLY*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0013	cloud	indirect	.	.	.	GCA_002005545.1_01576
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	71744	72091	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	13553	13900	GCA_003942565_1_2_60	GCA_003942565_1_2_60	-	240525	.	PFAM:PF04883.11	putative-tail-component	MSNGLADLIAKELAAYSDEVTEEVDKIAEQVADETVDELKETSPKRYGKYRRSWKKKKLANGSFVVFNAVASLTHILENGHLSRNGGRVAGIVHIKPAEEKAIQNFEKRIKEIGK*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0014	cloud	indirect	.	.	.	GCA_019733955.1_00425
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	72088	72387	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	13897	14196	GCA_003942565_1_2_61	GCA_003942565_1_2_61	-	240525	.	PFAM:PF10665.8	Minor-capsid-protein	MWNHEITLISKKVTGKDKLLQTISEDVELTLLCRKKRVTRSEFYQANQAGLKPSLVVEIRNFEYENQEFAKFEGKQYRILKTYPIDSEILELTLSEVLK*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0015	cloud	indirect	.	.	.	GCA_000963255.1_00912
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	72374	72655	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	14183	14464	GCA_003942565_1_2_62	GCA_003942565_1_2_62	-	240525	.	CDD:cd08054	Head-Tail-Connector-Protein	MDEGQLLELLKLKLGISTSLRDKPLKKIISSVITELTDNLGIELVGERADHEMFIVDYAAYRYEGGVDIPRHLQWRLHNLQLASKKEVKNVES*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0016	cloud	indirect	.	.	.	GCA_900490745.1_00918
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	72658	72948	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	14467	14757	GCA_003942565_1_2_63	GCA_003942565_1_2_63	-	240525	.	PFAM:PF08198.10	Arc-like-repressor	MSYKVIRPFKDLADPEKHDYAVGDIFPREGYEPTDSFTNGLLTGANTAGSIFLDVLGDDEPKKPAPETKEVKEEPAVEQAETVEETAEEPTKEVEE*	phrogs_hmm	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0017	cloud	indirect	.	.	.	GCA_019733955.1_00422
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	72960	74132	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	14769	15941	GCA_003942565_1_2_64	GCA_003942565_1_2_64	-	240525	.	PFAM:PF06673.10	Major-Capsid-protein	MHKSLILGARMRNKADKVVELEESIKELNKRSELEAAKLEQAGTDEEVSAVEKNLEDIQKELDEKEAEKEQLEKEIEDLKNQVEELNRKAPTYPSQEKRGGQKLEQRDAIAKYIRTGQTRDIAGLKTTDSGSAALIPTEVLKPHFLEKKRNPLLELVERVQVNSGSGKYPLIKKTDGVMVSTDELKSNPELGKPAISEIDYSIKTYRGYVPVSQEMIDDADYDIMSIVEDEVFNQGENTELSLVTAVLKTATQADASGFDGIKDIYNKKLKSIYKASIVVTKSMFAALDKVKDKDGRYMLQTDVASPTGYSFGGKTIYKVDDTVFGNEGDMKFFIGDVTEFVKEFDRSQVSVKWVNNDIYGQLLGLFIRLDIKKADEEAGFFGTYTDVVA*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0018	cloud	indirect	.	.	.	GCA_019733955.1_00421
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	74117	74707	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	15926	16516	GCA_003942565_1_2_65	GCA_003942565_1_2_65	-	240525	.	PFAM:PF04586.16	prohead-serine-protease	MNKRNSYRTAQFKTREESETGDLILSGYFIKFDEVTELWPGYFEVIKREGVEKAIKGADIRALFNHDDSLVLGRTGNGTVILGVDDIGLYGDIIINKDDPQAVGAYARVQRGDVIGCSFGFIPIKINTEEQADGSYLDTILELEIFEVSPCTFPAYPQTEIAARQKDFESQQRANREALDKRKKEIKEKFNLCTNH*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0019	cloud	indirect	.	.	.	GCA_918292745.1_03055
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	74691	75893	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	16500	17702	GCA_003942565_1_2_66	GCA_003942565_1_2_66	-	240525	.	PFAM:PF04860.11	Portal-protein	MGLLDRFLKRGKSRGGTNVITHSDFGLYIDGDSYVPLARNPDVIAAVNKIADMVSNMTIHLMENTDKGDIRIKDGLARKIDVNPCDNMTRKTWIFKIVRDLLLFGDGNSVLHVEYDPVNDYILNLRPFAMSEVSFKNDDVGYIVNYRGIDYNPSEIVHFVINPDPDNPFVGTGYRLALRDIVRNLNLATQIKKGFMSGKNVPSLIVKVDSSSEELATQEGRDKVAKKYLATSQAGEPWIIPDALLEVEQVKPLSLKDIAINESVEIDKKTVAGLLGVPAFILGVGSFDKEEYNNFVNTTVMSIATTITQTLTRDLLVSNNRYFKLNARSLYSYDITELSSVAEQMTKSMAMRRNEWRDWLGMPPDPDMDELLALENYIPQDRLGDQKKLKGGEEENEQTE*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0020	cloud	indirect	.	.	.	GCA_000493795.1_00145
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	75913	77643	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	17722	19452	GCA_003942565_1_2_67	GCA_003942565_1_2_67	-	240525	.	PFAM:PF03354.14	Large-Terminase	MGNLDKAKEYARHVISHKEEHCEENILAAERFIRDLDNPEFEMDEEIVDFVVHFIENTIVHQQGDDMFAVSIRNKPLLLQPWQHFVVVNLFGFYYKGSNERRFKEALIMLARKNGKTSFTAAIALAYQILDTDSGSKCYIVANSVKQAMEAFGFLKFNVERWNDKNIRIKDNNQEHSIAANFGNEGSFFIQALANDESRLDSLNGNVIILDEAHTMRNSKKYGLMKKTMSAYRNSMLFVISTAGDIPTGFLANRLKYCQKVLKQLVKDDSLFMFICKADQTTDGDVGDYLDENVLKKANPSWGVTVSLKALREEAEQAMNDPQTRNEFFNKTLNVFTNSMNAYFNPDEFIASDSCYDWTLEELARLPIQWYGGADLSRLHDLTAAALYGVYHDGEKDVDICITHAFFPRVNAQKKANDDGIPLFGWQSDGWLTMSNTPTVLYDDIVKWFIQMREKGFKIAAVGMDRKFGREFLTKMKQARFKMIDQPQLFYLKSEGFRRIEFKVKNKEFYYLHSDAYEYCVSNVRAIEKVDDAVQYEKLDGDGGTARIDLFDASVFACIQALANLGKNQSVMSFFD*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0021	cloud	indirect	.	.	.	GCA_015561235.1_01302
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	77636	78028	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	19445	19837	GCA_003942565_1_2_68	GCA_003942565_1_2_68	-	240525	.	PFAM:PF05119.11	Small-Terminase	MAKPITAKSIKSKVVKQMKDLGTYRKEFEMIIDIFAGMLYQYQKLAQDYADMGYPVTDTYVNKAGAENERKVPILTAMEILRKDILSYSNQLMMNPKSLGEVVEQEGESVLTEVLKFKNEIKKKRVTANG*	hallmark_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0022	shell	indirect	.	.	.	GCA_024295645.1_01718
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	78164	78484	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	19973	20293	GCA_003942565_1_2_69	GCA_003942565_1_2_69	-	240525	.	PFAM:PF14239.5	HNH-endonuclease	MYNKTIRPTLKLKKWEKFRDKIMRKHNYLCQESLRYGISVQAEMVHHIFPVSEYPELEFVEWNCLPLTNKKHNTFHDRVNDRVINQGLYWQKKRKKEFLNFFKNEK*	phrogs_hmm	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0023	cloud	indirect	.	.	.	GCA_925293305.1_01548
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	78602	78844	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	20411	20653	GCA_003942565_1_2_70	GCA_003942565_1_2_70	-	240525	.	.	hypothetical protein	MIKILKRILNLIYKKISSKDKIQILGSVGDETLNLEVSDIGIQGKIAVSEIHPESFRFYKYINDNKIISICEYKKTKKKE*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0024	cloud	indirect	.	.	.	GCA_019929305.1_01577
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	79010	79552	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	20819	21361	GCA_003942565_1_2_71	GCA_003942565_1_2_71	-	240525	.	CDD:cd01192	site-specific-tyrosine-recombinase	MEFVSPIKDNDDIQAMKDYLKEWNEMYYMLFITGLNTGLRVGDILTLKVKDVQGWHIKLRERKTGKQITRRMTKELKKEMRRYVEGKPFHHFLFKSRQGQNKAITRERAYQIIHEAAEELGIDNVGTHTMRKTFGYKYYNKTKDVGTLQKMFNHSSPAITLRYIGIEQAELDDALRNFVI*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0025	cloud	indirect	.	.	.	GCA_018499575.1_01151
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	79746	80147	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	21555	21956	GCA_003942565_1_2_72	GCA_003942565_1_2_72	-	240525	.	PFAM:PF05263.10	transcriptional-regulator	MKKLSDEDLKTLDRELFKFQNIQRTIDLRRLELETRNPDAQSGPSVGISKPTETIAIRIADDPTLKFLEGFKAIINKLLINLVDEDKEIFNLRWRYPQLRWEEIAEQKFMSKATIYRRRRIILEQYAILKGEL*	phrogs_hmm	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0026	cloud	indirect	.	.	.	GCA_019929665.1_00702
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	80144	80455	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	21953	22264	GCA_003942565_1_2_73	GCA_003942565_1_2_73	-	240525	.	PFAM:PF10078.8	transcriptional-regulator	MAKYKKPTYIIIQEAMAERIRFLEDELYERSYKDIEMIAKTYDVNPAWLVGWIDDEMMPGVQVVEKVVYKESPTARLPDYFNNNNEGKIIKWKQSRRFRGGRI*	phrogs_hmm	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0027	cloud	indirect	.	.	.	GCA_023110325.1_01326
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	80455	80715	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	22264	22524	GCA_003942565_1_2_74	GCA_003942565_1_2_74	-	240525	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILLSAGLNIWQMDRIRDLEEKKPMVIYKADNVGAEIFGKVVEKGRHGKLYTLTIRDYGVFVVTKDVYEKAKVGDEVKL*	mmseqs_cdd	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0028	cloud	indirect	.	.	.	GCA_001069915.1_01445
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	80712	80972	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	22521	22781	GCA_003942565_1_2_75	GCA_003942565_1_2_75	-	240525	.	.	hypothetical protein	MIIKDYKYDFSSGRICYIIGADGHELAMEHTKTEYGSVQRDDLDDFLLAVEEYDFQEAEMIEAFVDFQNDLLLYGIDFELRNEVTD*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0029	cloud	indirect	.	.	.	GCA_026782485.1_01779
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	80972	81463	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	22781	23272	GCA_003942565_1_2_76	GCA_003942565_1_2_76	-	240525	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNKQELIEKIEELETLGLISEHINKKEVLDLVEQLDEPEQVKIPQLVADWIEVAKSVYSLAGAMEYGSPGVNKWLENWDNQRIFALAWFFGYEVEKEKRYRVKMKNLDKRLNTLNQERTSKDFVFSELEENSLYVTKFTRKELEDAGFSEVFNSPLFEVEEVE*	mmseqs_cdd	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0030	cloud	indirect	.	.	.	GCA_015561235.1_01313
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	81456	81779	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	23265	23588	GCA_003942565_1_2_77	GCA_003942565_1_2_77	-	240525	.	.	hypothetical protein	MEDLKKKVNEVYGWSVEDGKPKPPKQDLPQAVKDRADYFWEMTEDGMTFMGAMECIFADEKPKDYDFGATKDWLPKSKEFDDWVGYSLGMSQLVIAVYLIYGGREDE*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0031	cloud	indirect	.	.	.	GCA_019928745.1_02378
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	81802	83157	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	23611	24966	GCA_003942565_1_2_78	GCA_003942565_1_2_78	-	240525	.	PFAM:PF14284.5	PcfJ-like-protein	MKHEQCKREADRRLKPPADFWRWCYSQITTYKWINKDKTIIASDLELGYCVEKRLTKSSRLTFYDKTYFFSIILSTSKRIEIQSYEFRSKLAEGKQFIDWQLTNLERFENDKHVKIGQDYNGQFYPYLFANFFSGGYYTGNKFYPNNWIEKLKNVSELKYLKFGNIAYWEIERLYKYKFEIEFAQKIHAYKLANEIMYPGYTGFTKNVDMRTLNRRWLQKNKQFFKNSNRSFNEFELSRRLKERNGQLVPGIESYLTYHDIKHIPKGVGINKFQNWVIKNHVDFNEYLDYLKMLREMGIEPEGDAMLVPKDFTAMHNHTVGLYNQFVEEKRKLEDKKKRKQLEAEFKLREGMDKTIQGYAFHVPRKVAELIYEGKKLHHCVSSYTDKHFKGNTLIVFVRLSNQPKTPLYTLEVRQGKIAQFRGKYNQDVPAEVWDIAREWMKQTKLVQKIA*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0032	cloud	indirect	.	.	.	GCA_000425005.1_02191
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	83154	83630	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	24963	25439	GCA_003942565_1_2_79	GCA_003942565_1_2_79	-	240525	.	PF14058.6	PcfK-like protein	MNDIKEKALAKLLEELNQPHDVALDRVHNWICDQEDEELFKGILKDRYSLKCALSYAKEKARKFAENGVACIDDATVFRWIREYFISNSQVSNIKQVPVEPVKKKKEDKSQGSPEEKVDVAKIRKGTGPDDDIIKKAKIKKEKGVVEKQMSIFDFLDE*	hhsuite_tools	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0033	cloud	indirect	.	.	.	GCA_000223335.2_01157
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	83731	83961	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	25540	25770	GCA_003942565_1_2_80	GCA_003942565_1_2_80	-	240525	.	.	hypothetical protein	MLLNLYFVYNGHCKFFLGSFNNVDELIERMKDHQWAFSGITRPKFKKYIGKDDVRFDYGAVDCYYLATKSTCREPR*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0034	cloud	indirect	.	.	.	GCA_016028255.1_00446
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	83976	84746	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	25785	26555	GCA_003942565_1_2_81	GCA_003942565_1_2_81	-	240525	.	PDB:4M4W_K	Replicative-helicase	MVTDALEEMALSYHRNTEQQDEICEKHGIPLIKILRTNDVLCRLCESERIHAENQIKVNELADAENERERKFYLERFSLYDDVLKNATLDNFDTPTEKEAEKLKFAKKICREWAGGARNNVVFQGEAGTGKSHLAFAIMKALSEATKEIAIFINVTDLLMKIKADFSQEEFLVNKIASAKFLVLDDLGMEKDSEWSFSILYNILNKRANTVITTNLTAQEIQKRYGRPFMSRLMKGVDNDHLMVFNDLKNKRKDYF*	rep_hall_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0035	cloud	indirect	.	.	.	GCA_963394945.1_00313
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	84740	84898	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	26549	26707	GCA_003942565_1_2_82	GCA_003942565_1_2_82	-	240525	.	.	hypothetical protein	MGILELIEQFEDDFYPISDEKKSLLIKQPLSTVTACLSDMANWKACGGKVSW*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0036	shell	indirect	.	.	.	GCA_000019005.1_00042
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	84886	85683	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	26695	27492	GCA_003942565_1_2_83	GCA_003942565_1_2_83	-	240525	.	PFAM:PF09681.9	replisome-organiser	MSEIKWIKITTDIFDDEKIRLIDALPDHDAILVIWFKILALAGKHNRNGLLMMSDKVHYTDEMLATIFQRPLNTVRMSLGVFEQFGMIEIIDGVITLPNWEKHQNIDGMERIKEQTRNRVARHREKQKNLALGNVTCNVTVTDGNALEEEGDKTKIKNRLDKDKNITTTSSNENILELFQSEFRRLLSGFEIEEINHLLNENDVDLVKEALKTAINLGKPNIKYIGGILRNWQLNQVTTVEQVQQSQKQHQEKKSGKEVTDEWGF*	rep_hall_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0037	cloud	indirect	.	.	.	GCA_024295885.1_00750
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	85698	85907	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	27507	27716	GCA_003942565_1_2_84	GCA_003942565_1_2_84	-	240525	.	.	hypothetical protein	MNNLQIIAVGTVVSVVLIESLIMNIKLKMTMRPKKIQFQAPQVEKGFIDFKTGRRVDIDPVTRKETFVD*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0038	cloud	indirect	.	.	.	GCA_001814215.1_01472
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	85988	86245	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	27797	28054	GCA_003942565_1_2_85	GCA_003942565_1_2_85	-	240525	.	PFAM:PF09035.9	Excisionase	MDNVLLSLTDWIKSIIKDTITRLVEIEKDSDHYPELMDVGTTCEFLGINYDTFSNNYRYMKGFPKELPGKKWSKRAIKEWLSNQL*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0039	shell	indirect	.	.	.	GCA_000421785.1_00044
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	86238	86576	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	28047	28385	GCA_003942565_1_2_86	GCA_003942565_1_2_86	-	240525	.	.	hypothetical protein	MIYRDMSTIEIKVLNAIKNSASFDLPIQARELRHSLGLSKRTLEEIIESLRVNFRQPIVAKKKRPSGYYLPKTEEERQTGLAPYKRQILTEQKNLAAIMSVNLKEYWEGQNG*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0040	cloud	indirect	.	.	.	GCA_028307985.1_01043
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	86573	86764	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	28382	28573	GCA_003942565_1_2_87	GCA_003942565_1_2_87	-	240525	.	PDB:1PRA_A	Repressor-protein	MLYDKIKEVAKTKSLSIYRIERDLGFSNGSLRKWNNSIPSATSLKKVANYLNVTSDELLEETT*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0041	cloud	indirect	.	.	.	GCA_013487865.1_01554
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	87044	87406	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	28853	29215	GCA_003942565_1_2_88	GCA_003942565_1_2_88	+	240525	.	PDB:1PRA_A	Repressor-protein	MSLLDRIKSLASTHQLSLAELERKLDFSNGSLRKWDSSTPSGDKIEKVADYFNVSTDFLLGRTENPSIADDNREYKWQGKILNVEEMASNVMMFGGRELTDEKKKIIQSIIEGYLKEAGD*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0042	cloud	indirect	.	.	.	GCA_025398935.1_01906
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	87419	87802	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	29228	29611	GCA_003942565_1_2_89	GCA_003942565_1_2_89	+	240525	.	PDB:3DTE_A	IrrE-protein	MTEKEIISHFQIRIIDFDGNLMPDELGFYEKETSTAFLSSKLDKKERIKVLLHELGHKDHTRSEYQNARLRCENEADRNMIHHLVKDAIESLDDPTEFDYLKFMSFYDLKTMTNEIMVKEEYQTLIG*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0043	cloud	indirect	.	.	.	GCA_025909465.1_01173
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	87848	88132	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	29657	29941	GCA_003942565_1_2_90	GCA_003942565_1_2_90	+	240525	.	.	hypothetical protein	MALFSGKDKISKKDSQKQKYYEDALPYFEENDMVHIHEKYPEQAAYIGNVLNSKAIALANASGPGAFEKVQIQQNQIIIKQNEEIISLLKEFKK*	.	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0044	cloud	indirect	.	.	.	GCA_008633025.1_01537
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	88307	89455	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	30116	31264	GCA_003942565_1_2_91	GCA_003942565_1_2_91	+	240525	.	PDB:1XO0_A	Recombinase	MKYNKTKYPNIYYYETAKGKRYYIRRSFYFRGKKKEITKSGLTTLPQARAALTEIEQQIHDQELGINTNLTLDQYWGIYSEKRLSTGRWNDTSYYLNESLYKNHIKPKFGSVLLKNLDRNEYELFISEKLKNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPATNKKISLKEFKSWISKAEEIMPKEFYALTYLTIFGLRRGEVFGLRPMDVTQNDSGRAILHLRDSRSNQTLKGKGGLKTKESERYVCLDDIGTDLIYYLIDEAAKVKRRLGIIKDQQKDYITINEKGTLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVYMTDRYNQVEDELAEATTDLFLSHIR*	common_virus_hmm	common_virus	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0045	shell	indirect	.	.	.	GCA_000186545.1_00169
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	89909	90325	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	31718	32134	GCA_003942565_1_2_92	GCA_003942565_1_2_92	-	240525	.	PFAM:PF06852.11	acetyltransferase	MMTIRRQEIVKLEDVLHLYQAVGWTNYTHQPQMLKKALSHSLAIYIALDGDAVVGLVRLVGDGFSSIFVQDLIVLPSYQRQGIGSNLMKEALGDYKDAYQVQLVTDQTDKNLGFYRSLGFETLSTYDCTGMIWVDRKR*	phrogs_hmm	hypothetical_protein	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0046	persistent	indirect	.	.	.	GCA_000473485.1_05269
GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote	cenote	CDS	90337	91032	GCA_003942565.1	RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565.1_RJNI01000002.1	GCA_003942565.1|RJNI01000002.1	GCA_003942565_1_2	GCA_003942565_1_2@C3	32146	32841	GCA_003942565_1_2_93	GCA_003942565_1_2_93	-	240525	.	COG1670	Protein N-acetyltransferase, RimJ/RimL family [Translation, ribosomal structure and biogenesis, Posttranslational modification, protein turnover, chaperones]. 	MPVNEYGQIIGESMEGYTPGELPSIDFLEGCYARIEALSVEKHAEDLLAVYGPDTPREMWTYLFQEPVADMEELVTVLNQMLARKDRFYYAIIDKATGKALGTFSLMRIDQNNRVIEVGAVTFSPELRGTRIGTEAQYLLARYVFEELNYRRYEWKCDALNLPSRRAAERLGFVYEGTFRQAVVYKGRTRDTDWLSMIDKDWPQVKARLETWLTPENFDKNGRQYKSLREF*	mmseqs_cdd	nonviral_gene	C3	32841	58192	91033	GCA_003942565.1|RJNI01000002.1@region_58193_91033@tool_cenote_CDS_0047	persistent	indirect	.	.	.	GCA_000187505.1_01592