core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	137462	138691	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	1	1230	GCA_003942775_1_3_141	GCA_003942775_1_3_141	+	363951	.	6JW0_B	TAL effector/DNA Complex	MNNSQQMLQALEEQDLTKAENYFVKALENDPSDLLYELATYLEGIGFYPQAKEIYLKIVENFPEVNLNLAAIASEDGQIEEAFAYLEEIQADSDWYVSALALKADLYQLEGLTDVAREKLLEALTYSEDPLLILGLAELDSELENYQEAIQGYAQLDNRTIYEQTGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKAVLYFKQLDTISPDFEGYEYGYSQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAEDTEEILLRLATIYLEQERYEDILDLQSDEPENLLTKWMIARSYQEMDDLDTAYELYQELAGDLKDNPEFLEHYIYLLRELGYFEEAKVNAQAYLKLVPDDVQMQELFETL*	hhsuite_tools	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0001	persistent	direct	high	1229	0.999	GCA_003942775.1_01013
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	138889	140034	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	1428	2573	GCA_003942775_1_3_142	GCA_003942775_1_3_142	-	363951	.	PDB:1XO0_A	Recombinase	MIKKYITKKGETRYLFQTYLGIDPATGKEKRTTRRGFKTIKEAKAAERDLLLDVEENGFSNNEDFQNPTFAEVAELWLDSYKNTVKPTTYQNVKDKLDVMIDLYFTDMKIQQISVAYCQKVAIKLSNRYILYANYYSVISRIFKYATSIDIIKSNPLDKIIKPKNRPLKTKENYYTKQELSDFLKVCKEDCTPVDYTFFHLLAFSGLRSGEAIGLMWSDIDFENKRLSISRTAVVVGKKQTVQDPKTKRSKRVITLDDETLNVLKLWKRQQIKEYFQVGIAYQHDSNYIFTNNRGDWLSTAAMKVKLQRFFCKHNKLKKITPHGFRHTHASLLFEAGVTAKIVSDRLGHNNVQTTLDMYTHINDNQRVEVVDQLMDFIRSS*	common_virus_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0002	shell	direct	high	1145	0.999	GCA_003942775.1_01014
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	140196	141086	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	2735	3625	GCA_003942775_1_3_143	GCA_003942775_1_3_143	-	363951	.	pfam08797	HIRAN domain. The HIRAN domain (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. The HIRAN domain is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this domain functions as a DNA-binding domain that probably recognizes features associated with damaged DNA or stalled replication forks	MKIGMRKPSLTRSLKARTTSKWKRQAKKAIIPGYGKKGMGWVKNPKKAMYNKVYHKTTFGLSDLFKPSKKKAKNNKQPLQYDSSRQHTSNKNKRGSFIFLIVSLILLFIVPPLGVLLLLVNFFVFIIKYFSSKKRKVTSSNPSVDKIIFHEDFLLMGTNYHKEEAEIAADFLSEGVHYFGKDNKSLKSYMLETYKPVYKYNKLKTVDVHLLPEPSNPHDQNAIQVLVNNIFVGYIPASIAAQISTYIANPNYRYDAILTGRGGPYKTLNIETERVISRESDLTYYLDLTLWHLAEK*	mmseqs_cdd	nonviral_gene	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0003	cloud	direct	high	890	0.999	GCA_003942775.1_01015
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	141099	141854	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	3638	4393	GCA_003942775_1_3_144	GCA_003942775_1_3_144	-	363951	.	PDB:2FJR_A	Repressor-protein-CI	MSNNKSKEIFSANLEKLMASRDVDRNKLCSDLGLKYTTVRDWLKGITYPRIGKIELLADYFGVNKSDLIEDKTQEVKEVKIPTSPLVQKITEKVVKLSTPRKQKVLNYANEQLKEQNNKVIMIEEKLFEYRVFEKLSAGTGFSYFNDGNYDTVFYDKDLDHDFASWVFGDSMEPKYMNGEVVLIKETGFDYDGAVYAVDWDGQTYIKKVYKEKDGLRLVSINSKYKDKFAPYEEDPRIIGKIVGNFMPIEN*	common_virus_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0004	cloud	direct	high	755	0.999	GCA_003942775.1_01016
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	142028	142234	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	4567	4773	GCA_003942775_1_3_145	GCA_003942775_1_3_145	+	363951	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MQKMTLKTLRTLKNWRQADAAEAIDVSVDTWGNWERGKTEPTVTQAYQIATTFGVSIDDIIFLHDIAV*	mmseqs_cdd	nonviral_gene	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0005	cloud	direct	high	206	0.995	GCA_003942775.1_01017
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	142256	142396	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	4795	4935	GCA_003942775_1_3_146	GCA_003942775_1_3_146	+	363951	.	.	hypothetical protein	MNELKIREDGIYLNNQKLKGVQAIKTKSTAECNHATVYLKFIAKLI*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0006	cloud	direct	high	140	0.993	GCA_003942775.1_01018
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	142370	142750	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	4909	5289	GCA_003942775_1_3_147	GCA_003942775_1_3_147	-	363951	.	pfam10711	Hypothetical protein (DUF2513). This family is found in bacteria. The function is not known.	MKLNPDCIRDILFVVEEYSTYSNDVSEDKLYEKLVPKYSQEELLYHVRQCEHSGLFLDVQHYFGGFSIQDLSPYGHQFINDIRQDTNWNRTKDIAKNVGSFSLDVLKDISSQVITNLISNQLGNKF*	mmseqs_cdd	nonviral_gene	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0007	cloud	direct	high	380	0.997	GCA_003942775.1_01019
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	142800	143513	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	5339	6052	GCA_003942775_1_3_148	GCA_003942775_1_3_148	+	363951	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNEIFNFHGQEVRTLTIDDEPWFVGKDVADILGYSKARNAIALHVDEDDALKQGLTDNLGRVQETIIINESGLYSLILSSKLPQAKEFKRWVTSEVLPAIRKQGGFIREDLDEDAFIALFTGQKKLREQQATMLEDIDYLKSEQPIHPSYAQSLLKKRKARVVACLGGIDSPAYADKIFAQSVFRQAEIDFKDHFNISRYDLLPKKHADAALAYWMTWEPSTNTKMKIMELNAFSQA*	common_virus_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0008	shell	direct	high	713	0.999	GCA_003942775.1_01020
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	143524	143850	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	6063	6389	GCA_003942775_1_3_149	GCA_003942775_1_3_149	+	363951	.	.	hypothetical protein	MRPRRYPYSGKKESTFVKADPKLVQSFSKNTSFLERLQKKPINFGFNYSRKIDRKNRKEDRGMAKLKIYLRSTSVDEAIGKIARIKEAHPEDVLQIDVTILDDRLLNS*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0009	cloud	direct	high	326	0.997	GCA_003942775.1_01021
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	143999	144289	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	6538	6828	GCA_003942775_1_3_150	GCA_003942775_1_3_150	+	363951	.	.	hypothetical protein	MEGITLQLRLDGESAELFTNQLLAFAEKQVKEQLENDRMPINQQALMKKFGFTHGYIKKLERKGLRFRKQGKDIMYDVNDVYEILELEKEVRKLRA*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0010	shell	direct	high	290	0.997	GCA_003942775.1_01022
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	144301	144636	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	6840	7175	GCA_003942775_1_3_151	GCA_003942775_1_3_151	+	363951	.	.	hypothetical protein	MFEPPILDQLMGVGALLIGFAGLCRHIKLQEERKEKERREEQEFASMIIQVRNHAYERGREDKWQEIRKNIQREFKGFTYDNEPPTGLRSEHLGLRQEPLALPEPKMHILK*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0011	shell	direct	high	335	0.997	GCA_003942775.1_01023
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	144649	144987	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	7188	7526	GCA_003942775_1_3_152	GCA_003942775_1_3_152	+	363951	.	.	hypothetical protein	MERLIQWLDDQIMYIKEAIEKGSANRHFITIWEYNHKNLLLVKEYITDYEKLTKDYEKIVKDFEKLTKDYHDVVSQNRLIKLEKLELEGRYIYEDMRMKYRANRRKWGARYV*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0012	cloud	direct	high	338	0.997	GCA_003942775.1_01024
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	144950	145792	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	7489	8331	GCA_003942775_1_3_153	GCA_003942775_1_3_153	+	363951	.	PFAM:PF09681.9	replisome-organiser	MRIGGSGALGMSEIKWIKITTDIFDDEKICLIDALPDPDAILVIWFKILTLAGKHNSNGLLMMTDKVHYTDEMLATIFRRPLNTVRMAIGIFEQFGMIEIIDGIISLPNWEKHQNVDGMEKIKEQTRNRVAKYRKKQKNLALGNVTGNVTVTDGNALEEDEDKNKNRLDEDKNKNRITTTTSSSGSEENILELFQSEFRRLLSGFEIEEINHLLNENDGDLVKEALKIAINSGKPNIKYIGGILRNWQMNNVTTVEQVRQSEKKNKDKKEEQEAKDEWGY*	rep_hall_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0013	cloud	direct	high	842	0.999	GCA_003942775.1_01025
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	145780	145938	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	8319	8477	GCA_003942775_1_3_154	GCA_003942775_1_3_154	+	363951	.	.	hypothetical protein	MGVLELIEQFEIDYYPLSYEKKTLLADQPIHQVVACLSEMASWNECGGRLSW*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0014	cloud	direct	high	158	0.994	GCA_003942775.1_01026
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	145932	146702	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	8471	9241	GCA_003942775_1_3_155	GCA_003942775_1_3_155	+	363951	.	PDB:4M4W_K	Replicative-helicase	MVDNVLEEVALSYRRNTEQQEELCEKHNIPLIKILRTESVVCRMCESERIHEENQARVNELADAESERERKYYLEKFSLYDEVLKNATLDNFETPTENEAEKLAFAKRICREWSEGARNNIVLQGEAGTGKSHLAFAMVKALSEYTKEIAIFINVTDLLMKIKADFSQEEFLVNKIASAKFLVLDDLGMEKDSEWSFTILYNILNKRSNTIITTNLISADIQKRYGRPFMSRLMKGVDKDHLMVFNDLTNKRKQYF*	rep_hall_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0015	cloud	direct	high	770	0.999	GCA_003942775.1_01027
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	146717	146911	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	9256	9450	GCA_003942775_1_3_156	GCA_003942775_1_3_156	+	363951	.	.	hypothetical protein	MFVLKHGAREDKPFLRSAVIGVTGLDISCSEEKKAMRFISRAAALQVGKALRSSFGNFYPVEVE*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0016	cloud	direct	high	194	0.995	GCA_003942775.1_01028
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	146911	147138	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	9450	9677	GCA_003942775_1_3_157	GCA_003942775_1_3_157	+	363951	.	.	hypothetical protein	MLELYFVYNGHCKFFLGRFDNVDDLIEHMKDHQWAFSGISRPKFKKHIVKDDVRFDYGAVDCYYLATKSTCREPR*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0017	cloud	direct	high	227	0.996	GCA_003942775.1_01029
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	147253	147441	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	9792	9980	GCA_003942775_1_3_158	GCA_003942775_1_3_158	+	363951	.	.	hypothetical protein	MEYSKQTVIDGLKRTIEQNEEKIIEYSKPCDSRKRRIRALERDLLKKKNKELRKKIKELEDE*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0018	cloud	direct	high	188	0.995	GCA_003942775.1_01030
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	147434	147844	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	9973	10383	GCA_003942775_1_3_159	GCA_003942775_1_3_159	+	363951	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNKEELVTIPKEVGEFITHQKAKGKNFFTSLENLKYELEILMWITKDDNGDKFLSAWVNGFNVELETLYQVRFKGLKKLKDGYDYLNYNKKQDEWLFMSKHEVGEFRTKHTRKELEEAGFGEVFTSKLFEVKEVEG*	mmseqs_cdd	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0019	cloud	direct	high	410	0.998	GCA_003942775.1_01031
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	147841	148368	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	10380	10907	GCA_003942775_1_3_160	GCA_003942775_1_3_160	+	363951	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MNKQELIVYCNDLKESKSRFINCIDVDRIIETIKQLDEPEKVKVPQCVEDWIEKCKNNFGFNLKSAMNINTILHYSDDCHKMIDWIKVNSNQELFARAWLDGYEVEKEKRYIVRIKGVVEDSAYLKHQLQNNHWYYGSLTECSLFSPYHTKKELEEADFGWVFDCEGIEIEEVEE*	mmseqs_cdd	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0020	cloud	direct	high	527	0.998	GCA_003942775.1_01032
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	148365	148523	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	10904	11062	GCA_003942775_1_3_161	GCA_003942775_1_3_161	+	363951	.	.	hypothetical protein	MSLTLNSTIGDLVLAIGEIIVESDGKTTTAILEIPDQSFYLEIAVKSKEEVG*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0021	cloud	direct	high	158	0.994	GCA_003942775.1_01033
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	148523	148999	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	11062	11538	GCA_003942775_1_3_162	GCA_003942775_1_3_162	+	363951	.	pfam08241	Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	MGDIRILDACCGSRMFWFDKNESHTTFMDIRQEKFEIHGKKVNVNPDVVGDFRDMPFDDETFNLVVFDPPHLKWAGQNSIMRSQYGQLDKVTWSEDLAKGFEECMRVLKIGGTLVFKWSDCQINVKEVLKSIPCKPLFGQQRGTTHWMTFMKFEEATE*	mmseqs_cdd	nonviral_gene	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0022	cloud	direct	high	476	0.998	GCA_003942775.1_01034
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	148996	149256	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	11535	11795	GCA_003942775_1_3_163	GCA_003942775_1_3_163	+	363951	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MKRFIAIWILLSAGLNIWQSIHIKKLEEKRPIIVYRADNAGAEIFGKVVEKGRHGKLYTLTIRDYGMFVVTKDVYDKVKIGDEVLL*	mmseqs_cdd	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0023	shell	direct	high	260	0.996	GCA_003942775.1_01035
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	149256	149711	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	11795	12250	GCA_003942775_1_3_164	GCA_003942775_1_3_164	+	363951	.	.	hypothetical protein	MDDILQALAKMLNMTVDEVSSLLTTFKGNAPQIYEQLMREWTLYNVLDNTSIAMILLSAILTGVLVYVVVRIKVDSDSLSYRYIPEGFTKLEYAEKLTKENLKNSKGTIKKLIVGITLALILAFASNIGRYLVAPNYLFIVNEIVPKLTNR*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0024	cloud	direct	high	455	0.998	GCA_003942775.1_01036
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	149720	150205	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	12259	12744	GCA_003942775_1_3_165	GCA_003942775_1_3_165	+	363951	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MNTIDKVKQWFIDRDLENGGRLDKQSLKLSEEFGELCAGYLKKNEQLTKDSIGDCAVVIVGLALLIKEDVHKIFETSGNDRDVMTCFSHLSRNISDFQIYQDSFSKDFRKVSLIRTIRWLKLLSTALGYDFEECFELAYQEIKDRKGRWIDGTFVKEEDLV*	phrogs_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0025	cloud	direct	high	485	0.998	GCA_003942775.1_01037
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	150202	150591	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	12741	13130	GCA_003942775_1_3_166	GCA_003942775_1_3_166	+	363951	.	pfam09643	YopX protein. YopX is a protein that is largely helical, with three identical chains probably complexing into a twelve-chain structure.	MIPKFRMWNRISSQLYLVDGLYFDDKEAEYVDDDNVLRFIGFKNIELMQSTGLKDKNGNEIFEGDILAFETDDEVINVNVFWDEEHALFMFESKKYNEQEPLAELVENNTYPFEIIGNIYENPELLEDK*	mmseqs_cdd	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0026	cloud	direct	high	389	0.997	GCA_003942775.1_01038
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	150591	150815	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	13130	13354	GCA_003942775_1_3_167	GCA_003942775_1_3_167	+	363951	.	PFAM:PF11753.7	nucelotide-kinase	MTDNINKPNHYIGTYGLEVKDVTRNFIKGKSEMEAHRWCSAVEYLLRYKEKNGIEDLKKARKNLDWLIEEMENE*	common_virus_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0027	shell	direct	high	224	0.996	GCA_003942775.1_01039
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	150927	151076	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	13466	13615	GCA_003942775_1_3_168	GCA_003942775_1_3_168	+	363951	.	PFAM:PF10078.8	transcriptional-regulator	MKRLERKLTQKELGERLGYSEATISIWENGGRISEFAIEDICTFFGIEI*	phrogs_hmm	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0028	.	unmatched_CDS	none	0	0	.
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	151151	151579	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	13690	14118	GCA_003942775_1_3_169	GCA_003942775_1_3_169	+	363951	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPRSSSGKTSKQVESMVVRRVSAQQDLELIAKAINNLSDLEYSRILVERYCRKKKREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0029	cloud	direct	high	428	0.998	GCA_003942775.1_01040
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	151494	151682	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	14033	14221	GCA_003942775_1_3_170	GCA_003942775_1_3_170	-	363951	.	.	hypothetical protein	MTVRCQSLDNTILAPFSVPILPRFSQIFPKIFPEITCKLEGCLLDRTPQTLIELCSISDNIH*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0030	cloud	ambiguous	low	87	0.46	GCA_003942775.1_01040
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	151868	152434	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	14407	14973	GCA_003942775_1_3_171	GCA_003942775_1_3_171	+	363951	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKKVEPIRDLDDIERIKDYLKNKSDRNYVLFMFGIYSGLRVSDIVPLQVKQVIADRIELKEKKTGKIRYFPISPPLRKEINRYIKDNQLAEYDYLFPSKKKKRTDGVRITHIGRVAVYQILQDAAKYVGLNHIGTHSMRKTFGYHHYKKNSNVAILQKIFNHSTPDITLGYIGYSQDELDQSILSFDY*	common_virus_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0031	cloud	direct	high	566	0.998	GCA_003942775.1_01041
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	152669	153013	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	15208	15552	GCA_003942775_1_3_172	GCA_003942775_1_3_172	+	363951	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MNTNPLRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKDLRYPHPLSPVIDHIVPVNKNGHPSDIANLQLAHWQCNRQKSDKLYADEKTNGTKVIGNRNLPQSTDWFKYKS*	mmseqs_cdd	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0032	cloud	direct	high	344	0.997	GCA_003942775.1_01042
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	153150	154454	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	15689	16993	GCA_003942775_1_3_173	GCA_003942775_1_3_173	+	363951	.	PDB:2JES_G	Portal-Protein	MTLKGMGYLRKKLANYKMGVDTRYNQYAMQHNDIDVGITIPPQIRQQYRAVLGWAAKGVDSLADRLVFREFANDEFEANEIFAQNNPDVFFDSAILSALIGSCCFVYVSQGDDDDAPRLQVIEASNATGVLDPITGLLTEGYAVLKRDDNGYALLEAYFTSDVTWFYPKDGQPFAIENPTGVPLLVPVIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERSDVTAEFYSFPQKYVLGLSQDAEAIDTWKATVSSLLTFTKDDEGDKPNVGQFTTSSMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVATCLRDEFPYLRKQFNKTVVKWEPLFEADANMLTLIGDGVIKLNQAVPGYMDAETIRDLTGIKGSDKPAPVVKEVADGGGYRSEPAQENQV*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0033	cloud	direct	high	1304	0.999	GCA_003942775.1_01043
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	154408	155799	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	16947	18338	GCA_003942775_1_3_174	GCA_003942775_1_3_174	+	363951	.	PFAM:PF06152.10	minor-head-protein	MVEDIVPSLLKKIKSEFEGARLDSEVLKDLLSKLHHSKASYLDANQYAIEIGEILSKALGTYLTNETLPDGKIYYNIAQRVLTDVLGRNHELVSDYAEQVQKNLNSEAKIGLAAQVPELNQDRIDGLVNRLASEESFDDVRWLLEEPVVNFTQSIIDDSIQKNAEFHHKSGLQPEIVRKSAYHCCEWCQEVQGTYKYPRVPKDIYRRHQRCRCTVDYDPKSGKVQNVWSKTWSKSDKSDKIEARKNIGVQSQISEVRKLALKIGIPSNPIQKSPKRLTEEEIIQAISGGDKTKGSCSSAAFAYIGNKGGYTVLDFRGGESCDFFSRNSRINMIGNLPGVKMHVAKNTNDFKATKELLENVENGNEYYLATGRHAAIIRKNDNLVEYLELQSKIVNGFKPFDNTVLKKRFKAQKSHAVRGRKYDVDSYLIDVNSLKDNPEFHNILSFLNTAESKQMKGIEGHEK*	phrogs_hmm	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0034	cloud	direct	high	1391	0.999	GCA_003942775.1_01044
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	155789	156028	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	18328	18567	GCA_003942775_1_3_175	GCA_003942775_1_3_175	+	363951	.	.	hypothetical protein	MKSDYEEVNWSEYCYKENDDDKIWWVDTSWYAKGLMLITFDKKKFYNLFEDYPQNMTFEEIEIFDKENPFWEDYFSDRK*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0035	cloud	direct	high	239	0.996	GCA_003942775.1_01045
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	156081	156311	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	18620	18850	GCA_003942775_1_3_176	GCA_003942775_1_3_176	+	363951	.	.	hypothetical protein	MENTIDFSEKKSSLERGASVKEILEENLEASHNYTSVLVVSLDKDGEINLGYSWDSSLQALGMLDVAKNYILNVIN*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0036	shell	direct	high	230	0.996	GCA_003942775.1_01046
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	156362	157774	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	18901	20313	GCA_003942775_1_3_177	GCA_003942775_1_3_177	+	363951	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAIELYERTGLSCYSWQINLLTPMMAVDKDGLWVHQKFGYSIPRRNGKTEVVYIFEIWALHDGMNILHTAHRISTSHSSFEKVKKYLEKMGYVEGEDFSSIRAKGQERIELFKSGGVIQFRTRTSNGGLGEGFDLLFIDEAQEYTTEQESALKYTVTDSSNPITIMCGTPPTPVSNGTVFTNYRKTCLFGKGKYSGWAEWSVSEEKEIDDVESWYNSNPSMGYHLNERKIEAELGDDKLDHNVQRLGYWPEYNQKSAISETEWNELCVGSMPDLSGKLFVGVKYGQDGANVALSIAVRTADERIFVETIDCQSVRNGNDWILDFVKRADVATIVVDGASGQKILDEELKKERMKSVILPTVKEIIVANSMWEQGIYQKTLCHAGQPSLKKITTNCEKRNIGSNGGFGYRSHFADMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0037	cloud	direct	high	1412	0.999	GCA_003942775.1_01047
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	157851	158321	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	20390	20860	GCA_003942775_1_3_178	GCA_003942775_1_3_178	+	363951	.	PDB:6B0X_d	Major-Capsid-protein	MKMSEFKTIETQEELDNIVKERIRREREKFGDYDDLKKRVSELESENSALKSTVEDDKQTRAGLDAQITELQGQVSNYETANLRTRIALQNGLPYDLADRLQGADEEALRADAERLAGFMRPATPQAPLRDTEPAMGDDKTMQMKQMLRELLPTGE*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0038	cloud	direct	moderate	464	0.985	GCA_003942775.1_01048
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	158327	159223	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	20866	21762	GCA_003942775_1_3_179	GCA_003942775_1_3_179	+	363951	.	PDB:3JB5_B	Major-Capsid-protein	MTDNAMKTGTLFKPELVTELIDKVQGKSVLAKLSAQTPIPFNGVEQFIFNLEGNAQIVGEGEQKLGNKAKLTSKVIKPLKFVYQARITDEFKNASEEKRMNFLSAYMDGFAKKIAEAFDLAALHGLEPKTMTDASFRATNSFDGVINGSIVAYDETKIDENLESAVQQVTARGCEVNGIALSQAAGQALAKVKVNGVVQYPEFRFGQNPDSFYGMKSDINKNLTVTGGTAETDHAIVGDFQNRFKWGYSENIPMEIIEYGDPDGAGRDLKAYNEICLRAEAFIGWGILDEDAFARVKA*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0039	cloud	direct	high	896	0.999	GCA_003942775.1_01049
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	159229	159441	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	21768	21980	GCA_003942775_1_3_180	GCA_003942775_1_3_180	+	363951	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MALYRDLKSGVIIASECILGGDWVPVEDTAPSGADLTVAELKSSLDELGIDYDKGSKKSDLVALYEENKG*	mmseqs_cdd	nonviral_gene	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0040	cloud	direct	high	212	0.995	GCA_003942775.1_01050
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	159445	159885	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	21984	22424	GCA_003942775_1_3_181	GCA_003942775_1_3_181	+	363951	.	PFAM:PF09355.9	head-to-tail-adaptor	MKNFAKIEDLELLWRSLKFDERARAEALLEVVSNSLRVEAEKVGKDLDDMVAENVSFASVAKSVTVDIVARTLMTSTDHEPMTQVSESALGYSFSGSYLVPGGGLFIKDTELKRLGLKKKQRYGAIEIYDLPKRNPCHFNRQGGNW*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0041	cloud	direct	high	440	0.998	GCA_003942775.1_01051
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	159830	160168	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	22369	22707	GCA_003942775_1_3_182	GCA_003942775_1_3_182	+	363951	.	PFAM:PF10665.8	Minor-capsid-protein	MTYLKGIPVILIDKVEIGNDDFGHPIHRDVEIEVQNVLVAPTSSEDVINQMNLTGKKAVYTLGIPKGDANKWENREVKFFGRKWRTIGIPQEGIESMIPLSWNRKVMVEVYE*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0042	cloud	direct	high	338	0.997	GCA_003942775.1_01052
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	160161	160397	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	22700	22936	GCA_003942775_1_3_183	GCA_003942775_1_3_183	+	363951	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MSDMKFQLNSAGVSALLRSSEMQGILREKGQGIASRAGEGFELTVSPGQKRANAKISTTDIKSMARNKKHNILLKAMR*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0043	cloud	direct	high	236	0.996	GCA_003942775.1_01053
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	160394	160729	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	22933	23268	GCA_003942775_1_3_184	GCA_003942775_1_3_184	+	363951	.	PDB:2LFP_A	tail-completion-protein	MIELVIKNFLDGQLDVPSFFEHKPKMPESYVILEKTGSGGSDYVHSATFAFQSYAPSLQKAAELNEKVKKVIENLITVNEVSGVHHNSDYNFTDTETKQYRYQAVYDINYF*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0044	cloud	direct	high	335	0.997	GCA_003942775.1_01054
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	160745	161368	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	23284	23907	GCA_003942775_1_3_185	GCA_003942775_1_3_185	+	363951	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MAPELEATEVRTPNAESTGGKNMTTASASNVTAAKPKASGAIASAPLGTLLPTDSKSDLNPAFKSLGYISEDGITNENSPESEEVKAWGGQTVLSSQTEKKDTFKFKLIESLNVEVLKETYGADNVTGTLSTGITVKANSNELPEHSLVIDILLKNKNFQRIVIPRGKVSEIGEVSYKDGEPIGYELTITALPDDQGNTHYKYIQGE*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0045	cloud	direct	high	623	0.998	GCA_003942775.1_01055
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	161374	161649	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	23913	24188	GCA_003942775_1_3_186	GCA_003942775_1_3_186	+	363951	.	.	hypothetical protein	MSKTFKGETKSGFKFEISERRLNNYELLELIGEVDEGQGQVFPKVVKLLFGDEQAKAFKDHLREEDGIVPNDKMADEIKSVFESVNGLKKS*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0046	cloud	direct	high	275	0.996	GCA_003942775.1_01056
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	161661	162047	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	24200	24586	GCA_003942775_1_3_187	GCA_003942775_1_3_187	+	363951	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MINLDEDALVCDLAETYQIYDYKQLPLNQVAVFAYGLRDDSRIKQMMSDQIVPLETTLLANIVDRLSLSLWLQTKDGQKGVNRPTSIAELLKKNHKEESDERDYLVFESGEDFENYRKALLAKTGGEE*	mmseqs_cdd	nonviral_gene	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0047	cloud	direct	high	386	0.997	GCA_003942775.1_01057
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	162047	164482	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	24586	27021	GCA_003942775_1_3_188	GCA_003942775_1_3_188	+	363951	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGKAYVQIIPSAKGISGMIQKEMGGEVASAGVSAGESLGSKMMGAVSGVIAAAGIGQAIGASITEGAALQQSIGGIETLFKTSAGKVRGYAEEAYRTTGLSANKYMENVTGFSASLLQSLGGDVNLAADVANRAMVDMSDNANKMGTSMDSIQMAYQGFAKQNYTMLDNLKLGYGGTQQEMKRLIADAASYKDEQEKLNISVKDGDMSFGNIVNAISVVQSKLKITGTTAKEASTTFTGSFESMKAAAQNVLGKLSLGEDIQPALQALMETTSTFLFGNLIPMIGNILKQIPTLILGGIKGVFSGIFGEGLGSIMGGIVTALGSAFLAFKAFSAVSGLLSGIPAVLTTIKTAVTGLFTAMSANPIGIAIAAIAALTAGLVYFFTQTEMGRQIWQGFMDWFSGVWQSVAPVLTEVWNGIVETATTVWNNMMAVVAPIIQAVVDFIRSVWDGISLWWTENQGLIQQTFTTVWNAIQTVIQTVMPIIQSIIETAMNILAPFIEGTWNNICTVVTTVWELIKIAIQTAMDVISGIIKAVMAIINGDWGTAWNAIKGVGEAIWKGLSAAGKAIFDGFAQILSNIWNTIKSVASSAWEGLKSTVLGLIDGLVQGAKNAWESMKQGVRDLVDKVTSIFDGIKNIDLWEAGKAILDGFLNGLKSAWNAVTDFVGGIAGWIADHKGPIEYDRKLLIPAGNAIMQGLDRGLQERFKGVKKSVSGMAGEISNAFSNDDFGLSGTPTIAKNLEASLAMPSAQIEAKDSQTVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGSIYAREGI*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0048	cloud	direct	high	2435	1.0	GCA_003942775.1_01058
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	164482	165180	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	27021	27719	GCA_003942775_1_3_189	GCA_003942775_1_3_189	+	363951	.	PDB:2X8K_A	Distal-Tail-Protein	MEYMIINGFNTSTIPNCVVTDFGEVEAAKPKVSETATLFGVNGNYRVLDGAYESYERTFGFYLPRTVDPSKIVERFQPNDNTLEFSYQLGSLFYADFVSAKYKPHGMHGWKLEIKLSMQPFRYQKSVAPLVFTASGNVNNPGSVYSEPVIEIEGDGDISLTIGRTTMHLTIRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGNNGLVFTGSVRKITVRPNWRYIL*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0049	cloud	direct	high	698	0.999	GCA_003942775.1_01059
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	165177	166982	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	27716	29521	GCA_003942775_1_3_190	GCA_003942775_1_3_190	+	363951	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNTPLNEAYNDEIVQERNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEIEKQQGYIQVYANQVISLLNNYIVSSIDVDRVSGTRVLSALAGSITRTNPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGEKAPDVDYVVVIDSPLLGKYTQIYEAVVEVNDQNVKDQASLIEYGKQYFRTSMCDMLEDNLEISVVGQSDVAVRMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHKIFEERLKKEIANADRAFDAEFAKREKAITDAIEQYKAKAEEMGAKIHEEMEKERPEFVKRIREELMSGADSIAELSKKLEQVSETARVNASLIGGDGNTQYNKNRLNGGTAKKISYGTDFVEVGHNGEGFEIGKKYVISWSATCTPYGKTDVTVVVNKNPFYGGHVHLAPANTVMPVIDKDLVQKEEQVLAVYYGAYRLTFSGDWYQNVEQSVTIDNQTRRIELAPVYKTVADGQNARYDGSWNESPTFIFDGGRT*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0050	cloud	direct	high	1805	0.999	GCA_003942775.1_01060
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	166979	167770	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	29518	30309	GCA_003942775_1_3_191	GCA_003942775_1_3_191	+	363951	.	PDB:2C3F_A	Hyaluronidase-phage-tail	MTETIPVRVQHKRMSARDWASSTLVLLDGELGVESDTGKVKVGNGRDRFSALQYLTGPKGDRGETGPVGPKGADGVMRFENLTSQQREGLRGDNGHSLNANVRIEGSYRNGATSQLNLIADVYYDGTRLTSGYTVDYYYRGFGNNNWQSLPNQTPDANGKFGQWNASQRSGGWLEVYIVVTHNGIKAAASTRLDNVSDGATGPAGPAGPAGPAGARGADGAPGQNIINQNSGQPMKYWSGTRAQYDAIPNKDSNTIYDIYSSS*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0051	cloud	direct	high	791	0.999	GCA_003942775.1_01061
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	167779	168180	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	30318	30719	GCA_003942775_1_3_192	GCA_003942775_1_3_192	+	363951	.	.	hypothetical protein	MTREGIYVGGKEVVGRYIGDKLIWKKYRFRIVNTLSLTILNINYQSATLDFYTRFSYRYVGLNSGYYYLRIEEKFVKVYAYNLSTPNPSFVFLLDQNEDAGVDEASKRQALSDLTRNWFRDDYKDIVLYDRMR*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0052	cloud	direct	high	401	0.998	GCA_003942775.1_01062
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	168184	169635	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	30723	32174	GCA_003942775_1_3_193	GCA_003942775_1_3_193	+	363951	.	PDB:3GUD_B	Neck-appendage-protein	MDITIQNVRSPALEHSGRYYKVFQPRTRDELLKLHHMGCVGDTVLTDIQLEQGDFPTSFVEPTVTQRTLSGLFKDMRSIELELRDPNSTLWGKIQQNNQGALTQFFNTNVKSAIAQTASEIRQEVRDAANSARVQVTPEGVTIGSTTLTGEQLASTISASSRGVDIIAPKVRVKSDMIVDGAVTAGKLAAGSVTADTIKAGAITGDKISVDDALIKNLTARDALIDKLTSKEIFTTKIESVVSSSTFLQAYQGEIGGFTLGQFDNGGGRWISGVNQFSVGMGNGAGYGTKTAFWANWGDNWNQAGPNSWHVDTDGQMYCKNTVSFYGKVDFSGSTNVNFYSRINAAKGIWTGNADIYGAGSNPAGGENAVVWWNQITTAKWRGYAGITSSSDRRLKENIKESPVNALDKIQALNMVSFDFIESQKHEEVGLIAQEVQEVVPHAVETDEVTSYLSINYSKFVPYLLKAVQELDQKIKEMEKLHG*	hallmark_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0053	cloud	direct	high	1451	0.999	GCA_003942775.1_01063
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	169628	169834	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	32167	32373	GCA_003942775_1_3_194	GCA_003942775_1_3_194	+	363951	.	.	hypothetical protein	MDNHTIDKLVAESLANRLAEGELGRAHLEARYTLALAELQAFKSVLEYDPALKELFEETQAKMKGTNQ*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0054	cloud	direct	high	206	0.995	GCA_003942775.1_01064
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	169831	170502	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	32370	33041	GCA_003942775_1_3_195	GCA_003942775_1_3_195	+	363951	.	PF07104.11	Protein of unknown function (DUF1366)	MTYKLTGSPILKGEKNVTIVTIEKEETGRYSYERVELPGNRTNDNEEVLIQAVLDHIRTELDPTSAIVQAQAKLEQTLAKLEQAEQKVAQAQANLEQTQEKLSQAEAKQNDLEALANRITKVVRVMAQDSIMGEKVSYGTTYKEMVELFPLAEVGKVYEPGSIFAVEDPNHTEVYGEGKRILIQTNQSFAYQGETLAQLEGTPFQNGVLATWKFNAPKATIVQ*	hhsuite_tools	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0055	cloud	direct	high	671	0.999	GCA_003942775.1_01065
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	170512	170790	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	33051	33329	GCA_003942775_1_3_196	GCA_003942775_1_3_196	+	363951	.	PFAM:PF04531.12	holin	MAEFERLIAQIFLSLIPVIGLYFSMKDRATKQENRLTVLEKDIENLNEFKRSANKRLDNHDEQNKAILVLAEQVKSLGEDVRELKTLIQSKS*	phrogs_hmm	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0056	shell	direct	high	278	0.996	GCA_003942775.1_01066
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	170805	171281	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	33344	33820	GCA_003942775_1_3_197	GCA_003942775_1_3_197	+	363951	.	PFAM:PF14606.5	neck-protein	MVCNLNTTNLAQVDGGYLIKQGDVASTFGFVLLDEDYRAVPSLEGEVAVVSLTMDKYQLKRKVTVTNSSVNFNLDTILPIGKYRLEVSAGGYIFPSDKATHIKIVASDKELVTEEVHALKELDIAEEVKKQLAERPASEGGACQEIPDLLTYYNLGKV*	phrogs_hmm	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0057	shell	direct	high	476	0.998	GCA_003942775.1_01067
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	171285	171605	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	33824	34144	GCA_003942775_1_3_198	GCA_003942775_1_3_198	+	363951	.	PFAM:PF12789.6	tail-fiber-protein	MDTSKWIAFAQALGVDYKALKQLIDTKIDNATVTQLIEQAKIAVKADILGDGVPENLDTLKEIATMIAGMSGDTEGAVVQKLADLGRRIDEFANLDLVSTYNAAKA*	phrogs_hmm	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0058	shell	direct	high	320	0.997	GCA_003942775.1_01068
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	171611	172327	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	34150	34866	GCA_003942775_1_3_199	GCA_003942775_1_3_199	+	363951	.	.	hypothetical protein	MSNFEEFAQAVGRDVKVLNQKPEPRLTLTGNTLGIVGGNNVTLPLPDNVGHEIRGTGSPEGRITAEIGTTYVDVNVTNGALKWIKESGNGNTGWRVLIGDTGWRTLNSVSRAGNSFIKIRRVNNLVTYQFGGLQWGWFGVGRRNGPGFARHNSSGDKGAKVLGPGGIPAGFRSEASLIGGIYNDAGKPYGIWYLGGVTDSNFIQFTFNDPIPTDKDIGDIRVGAISYLTDDPWPTKLP*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0059	shell	direct	high	717	1.0	GCA_003942775.1_01069
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	172344	172601	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	34883	35140	GCA_003942775_1_3_200	GCA_003942775_1_3_200	+	363951	.	PFAM:PF04531.12	Bacteriophage-holin	MINWKLRLQNKYFWLTAIPALLLVLQAGAAVFGYHLDLGDIGNKLILLVNAVFVFLTAIGLVNDPTTSGITDSTRALEYKKPSEE*	common_virus_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0060	shell	direct	high	257	0.996	GCA_003942775.1_01070
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	172604	173491	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	35143	36030	GCA_003942775_1_3_201	GCA_003942775_1_3_201	+	363951	.	PFAM:PF05382.12	peptidoglycan-hydrolase	MTLNIETAIDWMKEREGKVSYSMDLRDGPDSYDCSSSIYYSLMSAGAISAGWAVNTEYEHQWLMDNGYTLIAENTPWDAQRGDIFIWGRRGYSSGAGGHTGMFVDENNIIHCNYRFDGITVNDHDDIWLYAGRPYYYVYRLANADAQPAEVKRGWQKNDTGYWYVKEDGSYPKDKFEKIDGTWYYFDGSGYMLADRWKKHSDGNWYYFDQSGEMATGWKKIAEKWYYFDAEGAMKTGWVKYKDTWYYLDGKEGAMVSNAFIQSADKKGWYYLKPDGTMADKPEFTVEPEGLITVK*	common_virus_hmm	common_virus	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0061	cloud	direct	high	887	0.999	GCA_003942775.1_01071
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	173687	174238	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	36226	36777	GCA_003942775_1_3_202	GCA_003942775_1_3_202	+	363951	.	.	hypothetical protein	MKKLYIKTNQFANGDLQVENTSYKLCDTFKELYSTASKLVSEDTLNFVEDNFIEQNYKDEYNEVYENDGDTGEFVWQVFENKVSEEQFKELIEQLGVSYDEFDPEEELEKCIANKNRKSEFYGDGLKVIAEYLDSISHEDALAVVTYYYFYFGFGYEDQLISDIKDDQEDGAKFERVERAETI*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0062	cloud	direct	high	551	0.998	GCA_003942775.1_01072
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	174257	174463	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	36796	37002	GCA_003942775_1_3_203	GCA_003942775_1_3_203	+	363951	.	.	hypothetical protein	MTEEQLKEALIDLYESEFKDEQTFEEFADMLDFWIDKDDRILIEGRGMKPIDGIKEVGHVDKGVIYAY*	.	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0063	cloud	direct	high	206	0.995	GCA_003942775.1_01073
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	174453	174875	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	36992	37414	GCA_003942775_1_3_204	GCA_003942775_1_3_204	+	363951	.	PFAM:PF10078.8	HTH-DNA-binding-protein	MRINTSQVEAVLMNKAVSAYRLAKEIGIQESSISLLRNGKKDFNKLSLEVAMRVQAWIDAGNYRFSYDYSELIEELEADIAEGLTSDYIYIVRGEYNEILDKCPIIDYYYIPEEIEEGDVAEKILTTSVLAEMKADNEIF*	phrogs_hmm	hypothetical_protein	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0064	cloud	direct	high	422	0.998	GCA_003942775.1_01074
GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote	cenote	CDS	175188	175829	GCA_003942775.1	RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775.1_RJNX01000003.1	GCA_003942775.1|RJNX01000003.1	GCA_003942775_1_3	GCA_003942775_1_3@C11	37727	38368	GCA_003942775_1_3_205	GCA_003942775_1_3_205	+	363951	.	COG0765	ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]. 	MSYLFEILPSLLSGASMTLQVFALVLIFSIPLGVLIAFALQVHWKPLHHLINIYIWIMRGTPLLLQLIFIYYVLPSIGIRLDRLPAAIIAFVLNYAAYFAEIFRGGIDTIPNGQYEAAKVLKFSPFATVRYIILPQVTKIVLPSVFNEVMSLVKDTSLVYALGISDLILASRTAANRDASLVPMFLAGAIYLILIGIVTILAKKVEKKYSYYR*	mmseqs_cdd	nonviral_gene	C11	38368	137462	175830	GCA_003942775.1|RJNX01000003.1@region_137463_175830@tool_cenote_CDS_0065	persistent	direct	high	641	0.998	GCA_003942775.1_01075