core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	65831	66367	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	1	537	GCA_003943035_1_7_66	GCA_003943035_1_7_66	+	120701	.	COG0250	Transcription antitermination factor NusG [Transcription]. 	MDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQEFDIHVKVGDTVRIIDGAFADYTGKITEIDNSKVKMIISMFGNDTVAEVNLSQIAEL*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0001	persistent	direct	high	536	0.998	GCA_003943035.1_01543
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	66574	67371	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	744	1541	GCA_003943035_1_7_67	GCA_003943035_1_7_67	+	120701	.	.	hypothetical protein	MKTIFENQEVKLNRKNGSTVIVRNDGFSYLDAKSEKKNLNISFDKVSTILSLRYCNSNSSYNLIFRDQNGKNMAEFDTDTTIYNNGHNILETKAILLAFAASKLTKDFPNNLRDLDIILAFSMKEKEIRIASGIIYGSKHKISIEDIRRVQCVTNGTISNLALYKSDKKTFWDIPDMRVPCNEITLPLFEAIVTKNIGKGIDFSRGNGFDQKTSEFMIIRYMDANFFVNSDGTLDKEWQKQIYDRMSAYKYDLATLLEGYCRLRV*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0002	persistent	direct	high	797	0.999	GCA_003943035.1_01544
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	67705	68775	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	1875	2945	GCA_003943035_1_7_68	GCA_003943035_1_7_68	-	120701	.	PDB:1Z19_B	Integrase	MASIRKRGKYFEYRVVYHDSLGERHEASCGGFKTKAQARAAGQKREVELRNSPMSNNDVTMIDYYKAWAQLYKKPYITKKTWNSYKQTENHIIKYFGQSKLKDMTPVRYQEFLNEFGAKYAQDTIERTHYHIKSAVKIAVRDQLIPSNFTEGAVVKSQKEKKPEAESYLEEDEYFYVISKTQENPQYISHMTLYILAISGMRFAEAMGLTWDDIDFKNQVFRVENTWDYSDTEDFSETKNEQSIREIPFNDNIAKVLKNYKENYWRENKQGRVLFGASNRATNTALKRMVKREVHPHTLRHTYASYLIFKEVPVASISKLLGHKSILITLKVYAHQFEKMKEKHHSEVRNILSEIH*	common_virus_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0003	shell	direct	high	1070	0.999	GCA_003943035.1_01545
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	69061	69825	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	3231	3995	GCA_003943035_1_7_69	GCA_003943035_1_7_69	-	120701	.	PFAM:PF02452.16	antitoxin-mazE-like	MYKENPYFEQTKQNYIKVEKLYKRGKLKHTSSKYKFLAPAVKRQSEQFLFEANTPKRKYWKFDRGALIFVEFGVNIGGELSNNHWAIVLDKNDSPYQKTVTVIPLTSKNHKDAVLIDEVIAESPSLLLDEYVEELHKEVYAYLKYLDSKNALTEQLLLKAFQKYQHHFRNVDIPAKIITNENISNTLSKAKDTTELIEYYQKYIKRSYAKCSSLQTISKDRILKKNKLDPVGKVKVSNNTLDAINRKLKELYLF*	phrogs_hmm	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0004	cloud	direct	high	764	0.999	GCA_003943035.1_01546
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	69840	70580	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	4010	4750	GCA_003943035_1_7_70	GCA_003943035_1_7_70	-	120701	.	PDB:2FJR_A	Repressor-protein-CI	MNILGNSIKEIRKSKKMTQNQLAELTGFKQNTISNHENGNRQLDETDIRKYAKALNVEPQQLFDKASATPTYSASPPTSDTARAISDTVERLEEPRRVIVLDTAKMQLDEQNRAQNDVHEELTEYHVFEKLAAGNGYNYMEDRNYDVVFFNKDIDHDFASWVYGDSMEPKYLDGSVALIKDTGWDYDGAIYAVDWDGQSYIKKVYKEKDGLRLVSINDKYDDKFAKWEEEPRIIGKVVGNFMPVER*	common_virus_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0005	cloud	direct	high	740	0.999	GCA_003943035.1_01547
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	70751	70864	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	4921	5034	GCA_003943035_1_7_71	GCA_003943035_1_7_71	+	120701	.	.	hypothetical protein	MLKRRRKRKDPWLTQPRATVIAAIIALIAVILQLLFK*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0006	.	unmatched_CDS	none	0	0	.
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	70949	71101	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	5119	5271	GCA_003943035_1_7_72	GCA_003943035_1_7_72	+	120701	.	.	hypothetical protein	MDEEEFEKIVTFFSTEQGSAYLKGYIDALSLLTEIMKSLYEKAKSSDSTS*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0007	cloud	direct	high	152	0.993	GCA_003943035.1_01548
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	71251	71577	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	5421	5747	GCA_003943035_1_7_73	GCA_003943035_1_7_73	+	120701	.	.	hypothetical protein	MKDNIDREIIVIEPGYSKEQIKRIIGHYNKKQKEQIKITTFESPKVPESELFKNALLKGVAYGVFMLFFGIPFLLWGVLSNYSTNAANVYGILAFIFTLFVIISLEDK*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0008	cloud	direct	high	326	0.997	GCA_003943035.1_01549
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	71581	72207	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	5751	6377	GCA_003943035_1_7_74	GCA_003943035_1_7_74	-	120701	.	.	hypothetical protein	MQLALVISLVSILMSTYLFVIKHYRELYKIGISNSQAIFDESSKTMFVKITFVNESSLPFTVVGLMVTQDKFQYHLSDWGEFIHKEIKVIHCNNYNRYEIEDKTSDLPIIIAPYSKEARYFAFKFPRTYRHDFFLEIESPQRFLVVPFNPVPDTYPNVAAERKGRVRVIQVHWRQHRIRSIKDFVVSLSHKKTWFLLKLKIKDKFLRK*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0009	cloud	direct	high	626	0.998	GCA_003943035.1_01550
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	72261	72401	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	6431	6571	GCA_003943035_1_7_75	GCA_003943035_1_7_75	+	120701	.	.	hypothetical protein	MDTIAIRENSIRINNQKINGVQAIKIKSTAEKSYAEVYIKLLAKLV*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0010	cloud	direct	high	140	0.993	GCA_003943035.1_01551
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	73118	73354	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	7288	7524	GCA_003943035_1_7_76	GCA_003943035_1_7_76	+	120701	.	PFAM:PF13744.5	transcriptional-repressor	MRSVTKKQRLKKQFLEPKKRLRAERLKREYTETYMADLIGLKNRKGYSEKEDGLQPFKDYEMAIISRKFGISEAELFF*	phrogs_hmm	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0011	cloud	direct	moderate	227	0.958	GCA_003943035.1_01553
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	73408	73548	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	7578	7718	GCA_003943035_1_7_77	GCA_003943035_1_7_77	+	120701	.	.	hypothetical protein	MEKENTITLDEVVAQFLTNVIKEADKKDPAAVAAVAELIKAVRDFY*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0012	cloud	direct	high	140	0.993	GCA_003943035.1_01554
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	73652	73849	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	7822	8019	GCA_003943035_1_7_78	GCA_003943035_1_7_78	+	120701	.	.	hypothetical protein	MSNVAVNVVRIEPDAYDAAVKFANENDLKISKVISMFVRYGVENVELKEVDVRTEKFCIGDQVIN*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0013	cloud	direct	high	197	0.995	GCA_003943035.1_01555
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	73858	74220	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	8028	8390	GCA_003943035_1_7_79	GCA_003943035_1_7_79	+	120701	.	.	hypothetical protein	MTVSRDMTELEIKVLNGIKNGASFDLPIQASELRISLGLSKRMLEEVIESLRVNFRQPIIAKRTQPSGYYLPRNEEERQAGLAPYKRQIETEQKNLAAVMAVNLDEFWQRKKPDGNQAQK*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0014	shell	direct	high	362	0.997	GCA_003943035.1_01556
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	74242	74526	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	8412	8696	GCA_003943035_1_7_80	GCA_003943035_1_7_80	+	120701	.	PFAM:PF09035.9	Excisionase	MNDLMNQMLDQFEAGLMDRALKVMHVVTDEKRRYPMELNKSQCSEMLLGTKDTGTFDTRFNCHKDFPRIEGKRDKFPRDEVIDWYHRNWMKTGG*	common_virus_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0015	shell	direct	high	284	0.996	GCA_003943035.1_01557
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	74530	74754	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	8700	8924	GCA_003943035_1_7_81	GCA_003943035_1_7_81	+	120701	.	.	hypothetical protein	MQNQEQIRLIMNWERDHYRLGINYKNKLAKRSVEAVKLELAELSREWDSVTFSVEPKGAMKIEGDKTTIFRKRG*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0016	shell	direct	high	224	0.996	GCA_003943035.1_01558
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	74756	75514	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	8926	9684	GCA_003943035_1_7_82	GCA_003943035_1_7_82	+	120701	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MTGFKIGDKVWVKGVINQIDKGNVWDLYISTRENGVWIDSCLDECIPQNDTDEKPRYLRNVLARLRELPEHDREVWLKGIMDEFELDFSHAKWREGYEQGKFDGVVEAEKSKPVIPQFVADWIDYCKENHFTITGAFDPVSEYGIGIAGTFKGSVYKCTRWALDNQNLFARAWLDGYEVEQERRYKAVLPNLYEEENVLHFSQEDEVWYFNHDFNDNVSVDKDSRYHTREELEDAGFGWVFDCEGVEVQEVE*	mmseqs_cdd	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0017	cloud	direct	high	758	0.999	GCA_003943035.1_01559
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	75514	75705	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	9684	9875	GCA_003943035_1_7_83	GCA_003943035_1_7_83	+	120701	.	.	hypothetical protein	MPVFLNTEDLNSPLGSLENTLDIIKNFYNEERFEDMDNAKKLIKDYENAIALLSRVVEKGGAR*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0018	cloud	direct	high	191	0.995	GCA_003943035.1_01560
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	75702	76112	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	9872	10282	GCA_003943035_1_7_84	GCA_003943035_1_7_84	+	120701	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPKFRGRSTVEDDKGKWVYGHLLIDDNRALIINGIIEANDEYVSLEDWCDIDMKTIGQSTGLKDKNGTEIFEGDALKNNDYPNQTFICKHSRLQASFQAESLNGLLTLSLWKDEERDWQVLGNIYENQELVEDDA*	mmseqs_cdd	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0019	cloud	direct	high	410	0.998	GCA_003943035.1_01561
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	76109	76417	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	10279	10587	GCA_003943035_1_7_85	GCA_003943035_1_7_85	+	120701	.	.	hypothetical protein	MTLKDRVENLEALHTVQKRGLANTQLWLVFVSFIMFLLVIGMIAGYGKQQTQIKDLQTELERVTNEQKNVNQRQDVMINKFNQMYYEYQHKKITGKDNFPGG*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0020	shell	direct	high	308	0.997	GCA_003943035.1_01562
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	76506	76760	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	10676	10930	GCA_003943035_1_7_86	GCA_003943035_1_7_86	+	120701	.	.	hypothetical protein	MKWIKFKTRKLTEEELSEYKYMYYKYMWDCKIPEVDEIVLVSDGERIWTEDWVDYDEGLGLEDSDAEGLYWMPLPELPKEMSNE*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0021	cloud	direct	high	254	0.996	GCA_003943035.1_01563
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	76753	76986	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	10923	11156	GCA_003943035_1_7_87	GCA_003943035_1_7_87	+	120701	.	.	hypothetical protein	MSEILGAVLTLVLVFFLGAFINHLDWRKERKRLERQAKEDKRIELEAMYVICAIEHDRRERMRKLAEARKKSPGWNY*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0022	shell	direct	high	233	0.996	GCA_003943035.1_01564
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	77022	77348	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	11192	11518	GCA_003943035_1_7_88	GCA_003943035_1_7_88	+	120701	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGTLIGITGRIQTRIYENQQGQHVYVMEVVADNFQILQNRNNAANSDSL*	common_virus_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0023	persistent	direct	high	327	1.0	GCA_003943035.1_01565
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	77381	77647	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	11551	11817	GCA_003943035_1_7_89	GCA_003943035_1_7_89	+	120701	.	.	hypothetical protein	MYYTKTSNGIEVAKRDIIDDLKDVINRYEFYRDEVRRCYHDMEEYEAKIDLLETQKMDLVEALANKTWQDMRQTAFKRRQARKWRVKA*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0024	cloud	direct	high	266	0.996	GCA_003943035.1_01566
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	77644	78393	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	11814	12563	GCA_003943035_1_7_90	GCA_003943035_1_7_90	+	120701	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MKCELFHDNFQNYKRYGIPKAQLVIADIPYNLGENAYASSPEWYVDGDNKNGESDKAKSTFFNTDVNFNIAEFMHFCSKMLIKEPKEKGKAPCMIVFCAHQQQQMVIDLAKRYGFQKYIPIVFIKKSSPQVLKANMKIVGAVEYALVLYRDKLPKFNNDGQMVLNHFPWIVDQSYPKIHKTQKPVPILKRLIEIYTDKGDVVIDPCAGSGSTLRAALELERQAYGFEIDRFFYKDAKEKMLTSFQASLF*	common_virus_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0025	cloud	direct	high	749	0.999	GCA_003943035.1_01567
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	78466	79395	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	12636	13565	GCA_003943035_1_7_91	GCA_003943035_1_7_91	+	120701	.	PFAM:PF09681.9	replisome-organiser	MSEIKWIKITTDIFDDEKIRLIDALPEHDAILVIWFKILTLAGRQGGNGLLMMNNKVHYTDEMLAAIFNRPITTIRLALQTFEQFGMIEIINGIISLPNWEKHQNVDGMEKAKEQTRKRVARYREKQKQLLENGNVTCNVTVTPCNATDIDIEIDTDREKDKDNIVVIDKQNFIQEIEANLGRGLVKFEFDMINDYLLNQKVSTELFLEAVKIAVANNVRKFNYIARILDNWINQGIRTPEQAYQAQRDFQAKKNNKVMVKNQKAGNNPDWSNPDYKNETSPEKQAELEKQKQELLKRLEKKDGNSKKV*	rep_hall_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0026	cloud	direct	high	929	0.999	GCA_003943035.1_01568
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	79373	79564	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	13543	13734	GCA_003943035_1_7_92	GCA_003943035_1_7_92	+	120701	.	.	hypothetical protein	MAIAKKCDRCGKFHEIYNKNDNSRNINSLVTANADEYNKRYHQKLINLCPNCKDSFFNWLKKR*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0027	cloud	direct	high	191	0.995	GCA_003943035.1_01569
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	79569	80006	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	13739	14176	GCA_003943035_1_7_93	GCA_003943035_1_7_93	+	120701	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MPFFPEINEVKTKENARKILRGYPRWRRVANDRNGQRVTTIYSFTPRNPNFTNNSQVEKLAIRKVDAEIELDAIEQAVSNLHNPFYRRILFEKYLKSTPEKDFSIYQNLAISESSYYDLLDKALIAFAEIYRNGEQVVISGENPE*	mmseqs_cdd	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0028	cloud	direct	high	437	0.998	GCA_003943035.1_01570
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	80105	80680	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	14275	14850	GCA_003943035_1_7_94	GCA_003943035_1_7_94	+	120701	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKFLRRVEPIRDVDDIQRLKDYLKDRNERDYMLIVTGLYSGMRISDIIPLQVKQVTGEHIEIKERKTGKTKRFAINPELRRTLNNYIKNNDLKGYDFLFQSRKRKRADGVRITHIGRVAAYQIIRSAAESIGLQNIGTHSLRKTFGYHHYKKNQNVAILMEIFNHSSPDITLRYIGYKQDELDSSMIDFSY*	common_virus_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0029	cloud	direct	moderate	566	0.983	GCA_003943035.1_01571
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	80858	81193	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	15028	15363	GCA_003943035_1_7_95	GCA_003943035_1_7_95	+	120701	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MEMRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKSLRYPHPLSPVIDHVIPVNKNGHPSDIANLQLAHWQCNRQKSDKLYAEERAIGSVVIGNRNLPQSINWTSYRS*	mmseqs_cdd	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0030	cloud	direct	high	335	0.997	GCA_003943035.1_01572
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	81360	82568	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	15530	16738	GCA_003943035_1_7_96	GCA_003943035_1_7_96	+	120701	.	PDB:2JES_G	Portal-Protein	MRYKQYAMKYNDISVGITIPAEVRMKYRSVLGWAAKGVDSLADRLVFREFANDDFEANEIFNQNNPDVFFDSAVLSALIGSCCFVYISQGATEIPRLQVIEASNATGVLDPITGLLTEGYAVLQRDDYDNPLLEAYFTEDMTWYYPKNEKPYSIHNPAGVPLLVPVIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERADVTAEFYSYPQKYILGMDPSADAMDKWKATVSSLLRIDKDEEGDKPTVGQFTTSSMTPFTEQLKTAAAGFAGEMGLTMDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVAVCLRDEFHYLRSQFVNTNIKWEPLFEADASTLTMIGDGAIKLNQAIPGFLDGEAIRDLTGVKGSGNVVPALPSEKEAVDG*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0031	cloud	direct	high	1208	0.999	GCA_003943035.1_01573
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	82561	83955	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	16731	18125	GCA_003943035_1_7_97	GCA_003943035_1_7_97	+	120701	.	PFAM:PF06152.10	minor-head-protein	MDKDIFPELIKSIQDDFERAYGKSEVVRKSFEALKSKKATYTTVNDFAIEIGEILSKALGASLSADKLPDGKLYYNIAKRLLEDTLGRNYGLVSSYASDVQKQLNERANIHLKTQIPALNQDRIDGIVNRVSSEQDFDDIKWILQEPIVNFTQSIVDDSIEKNAEFHHKAGLQPEIVRKSVAKCCDWCQEVQGIYKYPRVPKDIYRRHQRCRCIVDYDPKNGKVQDVWSKIWRKQKDSDKIKERKGLNKEENISVVRKSALQHGIKVNPIKRSKVKKTEEAIIKAVGGGDQTKGSCSSLALAYIGNKAGFDVLDYRDGKSRTFFASMLNIKNISELPNVHSHVVADTNDFTAVKKLIGQMQDDKEYYLATGKHAAIVRKKEGWFQYLELQAPFEGNGFKPITNAVLKERFGCQRSHSVYGQKLQVPNVLIDSDSLGENEEFQKILGFINTKKGQQNKGDKGYVK*	phrogs_hmm	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0032	cloud	direct	high	1394	0.999	GCA_003943035.1_01574
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	83945	84244	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	18115	18414	GCA_003943035_1_7_98	GCA_003943035_1_7_98	+	120701	.	.	hypothetical protein	MSNNDDFLEELSELANQEDDRIWSESHLDGYSDFYKENEDSKVWWIDKLDAIGEHLFSFDQKKIYNLFVDYPHNMMDKEVEIFDKENPYWKEFLSNRKK*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0033	cloud	direct	high	299	0.997	GCA_003943035.1_01575
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	84352	85770	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	18522	19940	GCA_003943035_1_7_99	GCA_003943035_1_7_99	+	120701	.	PFAM:PF03354.14	Large-Terminase	MARTKKKLGNQNPTQSVILPYTKKKSLYKEAIDIYERTGLSSYPWQQNLLKAIMAVDKTGVWVHQKFGYSIPRRNGKSEILYILELWGLEHGLNMLHTAHRISTSHSSFEKVKRYLEKMGYEDGEDFNSIRAKGQERIELYKSGGVVQFRTRTSNGGLGEGFDLLIIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTPVSSGTVFTKYREACLFGKGKYSGWAEWSVNEEKEIDDVEAWYNSNPSMGFHLNERKIEAELGEDKLDHNVQRLGFWPTYNQKSAISETEWNVLKVEGMPKLSGRLFVGIKYGQDGTNVSMSIAVRTADKRIFIETIDCQSVRNGNHWIVAFLKQADVSQIVVDGASGQKVLDDELKDYKIKNVILPTVKEIITANSLWEQGIYQHTICHNGQPSLAKVATNCDKRNIGSNGGFGYRSHFSDMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0034	cloud	direct	high	1418	0.999	GCA_003943035.1_01576
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	85798	86310	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	19968	20480	GCA_003943035_1_7_100	GCA_003943035_1_7_100	+	120701	.	PDB:6B0X_d	Major-Capsid-protein	MLKKITELPGKQEKGDMRMSEFKAITTQEEFDAAIKSRLVREKEKYSDYDQLKSRVAELETENGGLKSSIEASNQSKAEADKQVADLQSQIAGFETEKLRTRVALEHGLPLDLAARLQGDDEEALKADAEKLAGFMKIKKPVPPLKGNEPNLGNDEDAALRGMLRNMRGE*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0035	cloud	direct	moderate	458	0.893	GCA_003943035.1_01577
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	86314	87204	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	20484	21374	GCA_003943035_1_7_101	GCA_003943035_1_7_101	+	120701	.	PDB:3JB5_B	Major-Capsid-protein	MATLQSGDLFPVETVQDIFSKVKGHSTLAKLTTQEPIPFTGTETFVFNLEGNAEIVGEGNPSSAGNATMKPKVIKPVLITYQARVSEEFVHCSEEKQLSYLKSFIDGLAKKVAQAIDIASFHGLEPKSMTDASFKATNSFDGLITGNVVTYEADKIDENIDAAVATITANDCEVNGIALSPAAGAALGKIKVNGVVQYPEYRFGQNPDSFYGMKSDVNKTLTTVASTAKKDHVIVGDFENAVKWGYAENIPLEIIEYGDPDGAGRDLKRYREVCLRTEVYAGWGILDEQAFARVEA*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0036	cloud	direct	high	890	0.999	GCA_003943035.1_01578
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	87152	87412	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	21322	21582	GCA_003943035_1_7_102	GCA_003943035_1_7_102	+	120701	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MPVGEFLMSKHLLVWRLNMEYINKETLASIETNCELGGDWVLASELKESYKLTVPEIKSKLDELGIEYDSKAVKADLIALLEQHEG*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0037	cloud	direct	moderate	206	0.789	GCA_003943035.1_01579
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	87418	87813	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	21588	21983	GCA_003943035_1_7_103	GCA_003943035_1_7_103	+	120701	.	PFAM:PF09355.9	head-to-tail-adaptor	MKNFATVDELQELWRPLKLDEQKRAEALLKVVSASLCVEAEKVGKDLDKLVVANESYACVVKSVVVDVVARTLMTSTDQEPMTQVSEGALGYTWSGSYLVPGGGLFIKDSELKRLGFKKQRYGVIDIYGTD*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0038	cloud	direct	high	395	0.997	GCA_003943035.1_01580
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	87800	88141	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	21970	22311	GCA_003943035_1_7_104	GCA_003943035_1_7_104	+	120701	.	PFAM:PF10665.8	Minor-capsid-protein	MARIKGITVTLIDKVKTGQDDFGHSIFEDKEIEVENVLVSPTTSDDITTQLNLTGRKAAYTLAIPKGDTHDWENKEVRFFGKRWQVFGLPLEGIEDLIPLDWNKKVTVERYEI*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0039	cloud	direct	high	341	0.997	GCA_003943035.1_01581
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	88131	88358	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	22301	22528	GCA_003943035_1_7_105	GCA_003943035_1_7_105	+	120701	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MKFKLNRAGVADLMKSGAMQTVLNKHASNIKNRCGDGYEQDVYVGRNRANAMVSAKTVKAKKDNLKNNTLLKAVR*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0040	cloud	direct	high	227	0.996	GCA_003943035.1_01582
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	88359	88694	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	22529	22864	GCA_003943035_1_7_106	GCA_003943035_1_7_106	+	120701	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGHLDVPSFFEHETKMPDSFILIEKTSGSERDHSKSATFAFQSYASSMQKAAKLNEKVKEVVKEMVELNSISGVHLNSDYNYTDTETKRYRYQAVFDINYF*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0041	cloud	direct	high	335	0.997	GCA_003943035.1_01583
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	88710	89261	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	22880	23431	GCA_003943035_1_7_107	GCA_003943035_1_7_107	+	120701	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MSKSSNVTTAKPKVGGAIYSAPLGTELPTDATTALNAAFKSLGYISEDGMTNTNSPESEDIKAWGGDVVNSSQTEKKDTFGFTLIEALNVEVLKEVYGSENVSGDLSTGIEVKANSKELKDHCLVAEIVMKNGVLKRIVVPQGKVTEIGEISYKDGETVGYQTTVTAFPDKDQNTHYEYIKGA*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0042	cloud	direct	high	551	0.998	GCA_003943035.1_01584
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	89264	89602	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	23434	23772	GCA_003943035_1_7_108	GCA_003943035_1_7_108	+	120701	.	.	hypothetical protein	MSKSKKNKVKTPSKQVTKMNLPELNSNVIKGTTSTGFKFEVSQERLANYELVEAIAEVDENPLVLPKLVKKLLGPQAEDLKEHVRDENGLVPLNRLMAEIEEIFNSKTSLKN*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0043	cloud	direct	high	338	0.997	GCA_003943035.1_01585
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	89617	89991	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	23787	24161	GCA_003943035_1_7_109	GCA_003943035_1_7_109	+	120701	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIKADEDALICDLAETYHIYDYRQLPALKVAVFSIGLRDDSRIKMKLSNQKVSTETLLLAGIFDRLSTLAWFKTADGQKGTNRPESIVEQLTAEPQERKEMVFTSGEEFEKARKEILEKIGGEH*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0044	cloud	direct	high	374	0.997	GCA_003943035.1_01586
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	89991	93071	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	24161	27241	GCA_003943035_1_7_110	GCA_003943035_1_7_110	+	120701	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGQAYVQIMPSAKGISGSIQSALAPEATAAGNSAGSSIGSSLVKAATGIIAAAGIGKAFSAAINEGAALQQSLGGIETLFKGSADKVKAYANEAYRTTGLSANTYMENVTGFSASLLQSLGGDTNKAAEIANMAMVDMSDNANKMGTSMDRIQDAYQGFAKQNYTMLDNLKLGYGGTRTEMERLLADATKLTGVKYDINNLSDVYQAIHAIQGKLDITGTTAKEAATTFSGSFASMKAAAQNVLGKLALGEDIMPSLKALAKTTSTFLFKNFIPMVGNILRGLPTVIGTVLKEGIAAIFGDGIAKSITDKIYNIYANVSGVLNALSDMIFGSGNKADNKDFLKSYLGLDEKLASRIVNIGENIRVTFVNIGSTIGNIAGIVSNFVSDLLGIAGSKQGVNAIGSAFESVTGFIKSASEKIKEFTGWLKNSPAALDSLKGAIVGITTALTTYKVVTGVTKGIEAARNGILAIQNAYTLAQFVRTGALTSAIAANAAATMGVSGAFKIFNAVLSLSGGWIGIAVTAIGALVAGLTWFFTKTKTGQKIWAAFVEWIKQAWQGIADFFVGLWSGITQGASNVWNGVTAIWNAAVETIKSTWNGIVEFFSNLWSGITSGVSAAWTAITQVIMTIVQPFIDGFINIWNGIKDGLSQMWEGVKMIFQGAWDFIKSIVLGAVLIVLDIITGNFGKLGEDLGLIWQGISDAVSTIWEGIKTYFMGVVSAIVGYGQSVFENFSNALAAIWDFIKNTASVAWEWIKTTISNLITGLVQGAQNILNGFMSFLSSLWNFITSVAVGAWNGLKSSVQAIINGIVQGAQNAWNSMKQGVSNLVSGIANIFNGLRNINLWSAGRAILDGFLGGLKSAWQGVTDFVSGIAGWIRDHKGPIEYDRKLLIPAGRAIMNGLDEGLRNQFKSVKSTVGNMAGEITDSLEDQPLSIGLSGFESVNPQMDVSNAILTTKMANVAQTQSREIELLSIIAKLANRPTIVSQELDKREISRIIAEPVAEEQARKQAILNAVDGLGWQMN*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0045	cloud	direct	high	3080	1.0	GCA_003943035.1_01587
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	93056	94579	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	27226	28749	GCA_003943035_1_7_111	GCA_003943035_1_7_111	+	120701	.	PDB:5LY8_A	Distal-Tail-protein	MANELIKVYFNDVELTKWITVLDGFTALGGADYDPTFHNYPILNGSEFIKTRKKLKKIPVPFYVKYEGVADYDALQTSLNVDEPKKLTFSHLPDRVFYAIPSGDLDFKEIKFSGKGTINFSIVDGLAHSKNPRYFEFKKNEQGILEAEIENNGSEEIPVNYRIKLKRESGFVGITSRYGAMQFGKIEETDSVEDKKNVLLSANGTGDFSNWTDGTIFYENQNKKVVTKMTADKNLGGRLGVLSADFTNTADGACFGAVKELNLPQQAKDWYIWARAWFETGYVSQTGAWCLSVVDSDNHFIAGMAIEKSERTRNKALVVFLMGDGAGGSRVVKSIEFSPTLWVKDNPYSLEGKDQNRNMFDLRKEGDKITYFWYGSYHSFFESKVKDKQAAKVQFFVGQYKGRNSTINELVTHHYLNDFAIYKLNVPYWRDVPNRYPTGAELFIDSTGEVNPEEKGRLYVNNLLAPDDEILGTDYFKVPPGKTKVQLLVSSFAEVESARAEIEEAWI*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0046	cloud	direct	high	1523	0.999	GCA_003943035.1_01588
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	94570	98685	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	28740	32855	GCA_003943035_1_7_112	GCA_003943035_1_7_112	+	120701	.	PDB:3GUD_A	Neck-appendage-protein	MDLVKGNVRIAIRDTTDTHVVGFFDNKSGIKYNAANLTQFLKGSCSVLVLTYHSKKMVAQSGQKLAFRFKDKDFWLNINSVKKTGYNIELTAYSLSLEANKEKRGPHKPASVMTIKQYIDYYDPENSFVIGINEVADKSLKLEWSGTDTILARLYSVANGFGAELEFVTELNNDYSLKRHVINIYREGNLGKDKTGMPVRVGEKLKVINYSDNMDDFYTGIRRIGKDGLTIAGLNKKIYDDKGNLLFYSSGDTLYAPQARDKYPSIARKTNDGYIVNEDSGTEYANKEALFGYMLSELKKHCELKVDYEVEGAVDGNIGDKKTLIDAQHFDPPLYVQARISEQTESLLEASDVKTSLSNYVRKSSQIANELLQKVEQLALEATPYTIKLATNNGIIFKNNQGQSTVYPTLKKGNKTVECTWQWLVDNQSFGTSATFEVRAAGMSNKLVLTAIALIDGKEVAREQVTFSNVNDGAKGDPGKSITITKTERQADGVKVTFSDNKSIVVPKGDKGDPADPKELNQLKQEMNQARQGLDEVKADLLREKSESSAKIDQVKQDVGAIRNQQTAYEQSNTQNLARITGQLGDKASKSEVKQTADGIREEISHLNTASRNYILNSDMTTATDRTTGTGLPLSSDLIRTLNAERSFTLSVDVIAQNMVAKNDKKRFGISYELKFSDGSNLWTEVFQTSDTALARISKNFVLPVGKQIVSIAGGLYFQALGQIKLSRPKWGIGHNNKEWVKAIEDTDEQITAARTIFEKTAEGLKTDMASVKSYVADDGKRREQLEQYTRTETARSAEALRKQASESYVAKSQYSEDARGVARRFEELNLNGTNLLPNTDFKNLVDVGNQFTVGGKTYKVKTLDKWYSSYNDGIPNPKTNYHGFFNETKFSETVFEFNESNGVREWKGLPIFITNDSRYTVGKYIFSADVNATGLGTHLEVGFYYYNKSGMREFHAGRSRKNITSVNVWSRISLELKINDDVDFSKEMGFYIYGYGFTSNSVLYFKRPKLTNTNWTPSVEDNKKYTETKIAEYKQTVDGQLAAVKQDVNGKVSQTTFDQRANQITQTVQELNDNVVKKNQIRVNENGIVSTAEKVVNGQTLASMIAQHPEWVEIIAKLLKVKADMIVNGAITADKLNVKKLSALASSLGEISAGLIDLRKHWERTSSEDVWGINRDVTYDTGALLGDFGLLTNGAPTRLQRNDTKPTIMPLVWLNSGELYFANVDSRYDLKQIIVNAVYPFVRTGDAKIRFGKMEDGRDALYIECLLSELYLKANNYTDWKQSEINSKVRWKVQGSLVLVDFNLQFDRDGDYHLVDIPKQYVPSNKMFPVQAWSLDRNKDRTAQLNVGGDLHIIGAERGVPYLGQIIWTY*	hallmark_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0047	cloud	direct	high	4106	0.998	GCA_003943035.1_01589
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	98713	99261	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	32883	33431	GCA_003943035_1_7_113	GCA_003943035_1_7_113	+	120701	.	PF07104.11	Protein of unknown function (DUF1366)	MKFRVANKYLREANKTFVAIRCDEPYTAYDRVLEGDRMNDSDEILTDAVLKIVATELDPTGAIAEMQQKLDKTSDATNKNKDSVERTSKLTDVLILLAISIEGGMQQDLYKKVASLLPTLTDGVRYSFGDIVSAPYPYDTNPKYPQGTPVILKFLDNWTHKGQPLQELLQKGACTTIMPKLG*	hhsuite_tools	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0048	shell	direct	high	548	0.998	GCA_003943035.1_01590
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	99273	99503	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	33443	33673	GCA_003943035_1_7_114	GCA_003943035_1_7_114	+	120701	.	.	hypothetical protein	MTPDVVNAVVTISASLIGTFGGIVTSAKLTTFRIQELEKKVEKHNSVVERTYRLEERTNYFDERIDKLESKIEKEK*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0049	cloud	direct	high	230	0.996	GCA_003943035.1_01591
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	99505	99789	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	33675	33959	GCA_003943035_1_7_115	GCA_003943035_1_7_115	+	120701	.	PFAM:PF06946.10	holin	MQQILITAGVVAPIISAIVNVAKAQFKLDGKQVSTLALVLGVVVGLTYAATIVRGDYAVYGWGGLIAGLSAIGYYELAFKNKKGDTTDDTKKEN*	phrogs_hmm	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0050	cloud	direct	high	284	0.996	GCA_003943035.1_01592
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	99767	101068	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	33937	35238	GCA_003943035_1_7_116	GCA_003943035_1_7_116	+	120701	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MTQKKKIKQFLAISAIFIGFIAPTVAQAAVGDQGVDWSVYQGTNGIFGYGHDKFAIIQIGGINAYGMYGQSTYETQVASAIAQGKRAHTYIWYEVGGNAALGEQVLKNFLPQVQTPKGSIVALDYESGASASKEANTNAILHGMRMIKAAGYTPMYYSYKPYTVAHVDYNRILAEFPNSLWIAAYPDYNVTPSPNYNFFPSLPGIAIFQFTSTYIAGGLDGNVDLTGITDNGYGRKNTPKTQTPAIKEGEKADNTPKSDIKAGDTVKVNFSATNWATGEEIPEWVKGRSYQVAEVSGDKVLLAGINSWIYKRNVEIISTTNSQPQAPAVPSAASYTVQPGDTLSGIAAKYGTTYQQLAALNGISNPNYIYVGQVLKVSGQGQSSPQNVVYHTAQWGDTLSGMASKYGTTVENIQALNGLSGDLIYAGVTYRIK*	common_virus_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0051	cloud	direct	high	1301	0.999	GCA_003943035.1_01593
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	101219	101680	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	35389	35850	GCA_003943035_1_7_117	GCA_003943035_1_7_117	+	120701	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MITALDVANTFLARAKKEKIDISPMKLQKLIYILYKNYLKETKKKLFSDKFEVWKYGPVISEVYQAFKEYRSNRITEFYLNRDGSYNTVKLGNNSHFDKIFEKVWNEYRLIDGIYLSQLTHQRNTAWSKADDRGDIFLNDHDIFEEEEYEIVI*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0052	cloud	direct	high	461	0.998	GCA_003943035.1_01594
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	101691	101981	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	35861	36151	GCA_003943035_1_7_118	GCA_003943035_1_7_118	+	120701	.	.	hypothetical protein	MEDIPVEEDVPKDNHFPIDNSNSIKPNEVTKDVFNTIKGHNLLGWCVAILVVIYLFEFFRNQGKISEAGGKILEIFKLLIFSLTGYLFGTNANKDD*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0053	cloud	direct	high	291	1.0	GCA_003943035.1_01595
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	102689	103456	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	36859	37626	GCA_003943035_1_7_119	GCA_003943035_1_7_119	+	120701	.	PRK05299	30S ribosomal protein S2; Provisional	MKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKFADQAYDFMRDAAANDAVILFVGTKKQAADAVKDEAERAGQYYINHRWLGGTLTNWETIQKRVARLKEIKRMEEDGIFDVLPKKEVALLNKQRARLEKFLGGIEEMPRIPDVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMADAIIEGRQGEDNVESVEAELAATDTQADSIEEIVEVVEGTNE*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0054	persistent	direct	high	768	1.0	GCA_003943035.1_01597
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	103539	104582	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	37709	38752	GCA_003943035_1_7_120	GCA_003943035_1_7_120	+	120701	.	COG0264	Translation elongation factor EF-Ts [Translation, ribosomal structure and biogenesis]. 	MAEITAKLVKELREKSGAGVMDAKKALVEVDGDIEKAIELLREKGMAKAAKKADRVAAEGLTGVYVSGNIAAIVEVNSETDFVAKNAQFVELVNETAKVIAEGKPANNEEALALIMPSGETLEAAYVSATATIGEKISFRRFAVVEKADDQVFGAYQHNGGRIGVITVLSGSDEDLAKHVAMHVAAMKPSVLSYKELSEEFIHDELAQMNHKIDQDNESRAMVGKPALPHYKFGSKLQLTDEVIAQAEEDIKAGLAAEGKPEKIWDKIIPGKMDRFMLDNTKVDQQYTLLAQVYIMDDSKTVEAFLESQGVTIAGFTRFEVGDGIEKAANDFESEVAATMAAALGQN*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0055	persistent	direct	high	1043	0.999	GCA_003943035.1_01598
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	104658	105008	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	38828	39178	GCA_003943035_1_7_121	GCA_003943035_1_7_121	-	120701	.	.	hypothetical protein	MKMDWFKYTRHVLVWWFSTLFFFTIISANYVDVQVATLVACLFAPFLFEPSSIKPKTKWIIDLAIIVISVFAVLFTQTYRIAFTYSEITYLLISLIILILIDLVISHKGFTKRIVK*	.	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0056	persistent	direct	high	350	0.997	GCA_003943035.1_01599
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	105267	105728	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	39437	39898	GCA_003943035_1_7_122	GCA_003943035_1_7_122	+	120701	.	COG4463	Transcriptional regulator CtsR [Transcription]. 	MSSKNTSDSIEEYIKTLLAQAGIAELKRSEIADVFQVVPSQINYVIKTRFTESRGYIVESKRGGGGYIRIGRIEFSNHHELLCDLLHSVGEQISHQVFTDIIQLLFDEQIMIEREGNLLLATTTDRVLGTNAAQIRARMLKKILQQVDRKGKN*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0057	persistent	direct	high	461	0.998	GCA_003943035.1_01600
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	105732	108161	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	39902	42331	GCA_003943035_1_7_123	GCA_003943035_1_7_123	+	120701	.	PDB:4M4W_K	Replicative-helicase	MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKVYQQEGDFTIWPFSYRMKVLFLTAEQIAGAVHANNLGTEHILLAMLFDRGSLAARILEFIGFSYEDKEGVLRMTDLRKNLEHKASWNKEDLKAIRHLNKSAAATRQTMANMMGMPPATSGGLEDYTRDLTEMAHMGLLEPVIGRDKEISRILQILSRKTKNNPVLVGDAGVGKTALALGLAQRVADGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDSTLDAANILKPALAKGTLRTIGATTQEEYQKYIEKDAALSRRFAKVTIEEPTVADSIAILQGLKKSYEDHHKVVITDSAIETAVKYAHRYLTSKHLPDSAIDLLDEAAARVQNKSPQNHVKAELSAADKALMAGDWNKVDTLLEKESQPIVYKLRVKDEDVLATLSSLSGIPVQKLTQTDAKKYLNLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFLFLGPTGVGKTELAKALAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSEDMQEVVKIMVQPLISSLAEKGIKLKFQPSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLAGELKTGQSLKVGVKAGKLKFEVL*	rep_hall_hmm	common_virus	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0058	persistent	direct	high	2429	1.0	GCA_003943035.1_01601
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	108208	108648	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	42378	42818	GCA_003943035_1_7_124	GCA_003943035_1_7_124	+	120701	.	PRK03624	putative acetyltransferase; Provisional	MNIREMVEADYDQVYQLWLSCAGMGLNHLDDSKEGIAQFLKRNPQTCLVAVENQIIIGAILVGFDGRRAYIYHTAVHPSYRRRGIARQLVETVLTVLDDLKIHKVALVVFKRNKEGNQFWEKLGFSVREDLIYRNQARTEMTRIDT*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0059	persistent	direct	high	440	0.998	GCA_003943035.1_01602
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	108727	109698	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	42897	43868	GCA_003943035_1_7_125	GCA_003943035_1_7_125	-	120701	.	COG0042	tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]. 	MTNLNTPFLIGDVKIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNKKTLHMLHIDEEEHPVSIQLFGSDEDSLARAAEFIQENTQTDIVDINMGCPVNKIVKNEAGAKWLKDPEKIYSIINKVRSVLDIPLTVKMRTGWADASLAVENALAAESAGAAALAMHGRTREQMYTGHVDLETLHSVAQALTKIPFIANGDIRTVQDAKQRIEEVGADAVMIGRAAMGNPYLFHQINHYFETGEILPDLSFEDKMHIAYDHLKRLIDLKGEHIAIREFRGLAPHYLRGTAGAAKLRGAIAQANSLAEIEALLQV*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0060	persistent	direct	high	971	0.999	GCA_003943035.1_01603
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	109685	110647	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	43855	44817	GCA_003943035_1_7_126	GCA_003943035_1_7_126	-	120701	.	PRK00114	Hsp33 family molecular chaperone HslO. 	MVRGRTTKSLSYEILIFVPLPFLFYVTIKGMDKIIKTISENGAFRAYVLDSTETVRTAQEKHQTLASSTVALGRTLIASQILAANEKGDTKITVKVLGTSSLGAIITVADTKGTVKGYVQNSGVDIKKTATGEVLVGPFVGNGEFLVITDYGTGNPYHSMTPLVSGEIGEDLAFYLTESQQTPSAIGLNVLLDTNDKVKVAGGFLLQVLPGAKEEEITRFEKRIQEMPAISTLLESENHIEALLSAIYGNEPYKRLSEEELRFQCDCSKERFLNALSSLPKSDLEEMRDEDHGAEITCQFCQSTYHFDEKDLEELIRDKS*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0061	persistent	direct	high	962	0.999	GCA_003943035.1_01604
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	110766	112037	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	44936	46207	GCA_003943035_1_7_127	GCA_003943035_1_7_127	-	120701	.	PFAM:PF05816.10	tellurite-resistance	MSQEFNFDIDKIANNAISKTDRTTEIIESTETQANGQMNFLEKLTPEQQDAIIAKAPQLVDNFISDQNTLLDFGQAAVEEVNNTVNRILAEQKKLQIPQVDELLKNTNKELNGFVAKYKDTQIAELDKKPNFLEKLFKQSKNTLQEFYFDSQNIEQKMDSMAATVVKQEDLLARNIVSAEMLIEDNTKSIENLVGVISFIEATQKEAGARASTLQNEVAQLDTATLDYQTKSQELARLTEVVNTLEQQHTEYISRLYVAWATTPQMRNLVKVSSDMRQKLGMLRRNTIPTMKLSIAQLGILQQSMKSGQVADAISNANNAALQMLAETSKEVIPQMERISQNPTIAVESVTKLAESLVAQNQGIISAIDKGREKRALLEATVIKSAETINDSVKLRDQKIIQALLDQGKEIQKEVDKPTTSET*	phrogs_hmm	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0062	persistent	direct	high	1271	0.999	GCA_003943035.1_01605
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	112056	112874	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	46226	47044	GCA_003943035_1_7_128	GCA_003943035_1_7_128	-	120701	.	PF10112.9	5-bromo-4-chloroindolyl phosphate hydrolysis protein	MPRRNYNNVRSRRWIGILLILIAVGIIIQYLIPILLSIGIGYGIYYYATHKPKKITEPSASQQIEDLKKEIRAADSRIKQLDNYLKEKSYANYQQLADQLLPQLSYIQGRADTLKKYISPEIYQRIQRKVQNVTTDIHEQLHNLRAQTSESLKPNLEELAPELLETIHNIQIDHEAILKKISQSESNNKEELTAIHQSQMEHYEDILEGYLKIKTSPKDFYNAEERLSSAKAAIEQFDLDLDETLRQLNEADLRDFDISLRILSKKEPNTEL*	hhsuite_tools	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0063	persistent	direct	high	818	0.999	GCA_003943035.1_01606
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	113239	113433	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	47409	47603	GCA_003943035_1_7_129	GCA_003943035_1_7_129	+	120701	.	cd08287	formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family.  The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones.  FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	MVNLAMAGGPASCTTYDKEVLLKAVLDGQINPGKVFTQSYKLENIDQAYKDMADRKTIKAMIVM*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0064	shell	direct	high	194	0.995	GCA_003943035.1_01607
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	113474	114151	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	47644	48321	GCA_003943035_1_7_130	GCA_003943035_1_7_130	+	120701	.	PFAM:PF06852.11	acetyltransferase	MSGRRHCLDPFFIVCMFASKFSTILIFGKIKEKRLRKRKAMSLTSQIITAEFPDLEKVEQLNTEAFPEEERAPLSELLRYGDGEYSHFFAFYDGDEFVGFAFSVYNERAFYISFFAIMPHLRSHGYGGKIIDKLVDFYQRTMILEVERLDEPCDNLEQRKARMDFYKRNGFRSSHAYLEYDGLSFEILYKGPFFDEEAYRDIFKKIQEDGYFEFEIKHGHGRDWE*	phrogs_hmm	hypothetical_protein	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0065	persistent	direct	moderate	557	0.822	GCA_003943035.1_01608
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	CDS	114238	114594	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	48408	48764	GCA_003943035_1_7_131	GCA_003943035_1_7_131	-	120701	.	PRK02471	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB. 	MLEQQGYKADDILPKGVQVFLRRNSNISTGGDSVDVTEIMHASYKELATETATAMGAWVCGVDLIISDSTLPASKKESNCTCIELNFKPYIYMHTYCAEGPGQSITPNILAKLFPEIY*	mmseqs_cdd	nonviral_gene	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_CDS_0066	cloud	direct	high	356	0.997	GCA_003943035.1_01609
GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote	cenote	tRNA	102305	102376	GCA_003943035.1	RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035.1_RJOI01000007.1	GCA_003943035.1|RJOI01000007.1	GCA_003943035_1_7	GCA_003943035_1_7@C8	36475	36546	tRNA-Cys	tRNA-Cys	-	120701	.	tRNAscan-SE score: 55.6	Cys	NA	tRNAscan-SE	.	C8	48764	65831	114595	GCA_003943035.1|RJOI01000007.1@region_65832_114595@tool_cenote_tRNA_0001	.	.	.	.	.	.