core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	152333	152710	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	1	378	GCA_003943095_1_3_152	GCA_003943095_1_3_152	-	264231	.	.	hypothetical protein	MTRSDGVNNKLGSEFLRKFDNYERPILFGRTKRQLVFLLGICFGAGLSILLYFLHFPKFVTYVLLAVIVTPFILYGTKKDVELKEIFRFKFTIQERVFMTDYQKGESYTKHDFKPKKGVKEVNQG*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0001	cloud	direct	high	377	0.997	GCA_003943095.1_01195
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	152767	153237	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	435	905	GCA_003943095_1_3_153	GCA_003943095_1_3_153	-	264231	.	.	hypothetical protein	MAENKELSKITIHAHDEEEAHRLVSAVFQQEHNHSQTQEATKPNSSSKFMVAVKTIGYVLLVAGEWLLKMILFLLMTPIYLWYFIRNWIGSAVVILVGYFIIALAYYNFTGQNSLVSNGDTITATLFSETKGMILLIVITVFAALATFGEIRDGLD*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0002	cloud	direct	high	470	0.998	GCA_003943095.1_01196
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	153259	154008	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	927	1676	GCA_003943095_1_3_154	GCA_003943095_1_3_154	-	264231	.	PF04610.14	TrbL/VirB6 plasmid conjugal transfer protein	MNASELTKSLAGYNSTVNDTANAIASATRPLAIIIISIFFLIEMDSWWKTMKQEGGGLTSELWMEIAFKYIIAYMLVMMTGRIFGAILEISNIAIKMINHVVPASSVDFNSELGHIKGWFIKNVITFIGGGTQFVAKLSTKLIVMMRFFQMYLLKAIGPLLVAFFVSDITRPTAINILKYFGAVAFQGVLVFIVLRLYPALVTSDLLSINMSGTWESWVTAFTSIAKGIIFIFLLWGSQRQAKSLLGVM*	hhsuite_tools	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0003	cloud	direct	high	749	0.999	GCA_003943095.1_01197
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	154020	154247	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	1688	1915	GCA_003943095_1_3_155	GCA_003943095_1_3_155	-	264231	.	PF12750.7	Maff2 family	MDLVRTVVGALGVVGTVRGLFGIWQGWEDFSVGKKNDNVQQQERGQSGMLYGGMLAAGASGIAAGIVAALSGLHF*	hhsuite_tools	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0004	cloud	direct	high	227	0.996	GCA_003943095.1_01198
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	154249	154602	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	1917	2270	GCA_003943095_1_3_156	GCA_003943095_1_3_156	-	264231	.	.	hypothetical protein	MNEIKSQYDTEVTISDLKTLGLHGNVTAYLETGETLFLRAKYGIIKRQAIVDGQRQVVDVVVPYADIYKKIRTISRKHLLIARKARRLGRPILILTGKGYHRPQKIKKKFKKKKEII*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0005	cloud	direct	high	353	0.997	GCA_003943095.1_01199
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	154968	155234	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	2636	2902	GCA_003943095_1_3_157	GCA_003943095_1_3_157	-	264231	.	.	hypothetical protein	MALFGNNRESQRMAAMRETQKPAEELEMLIEYYDKTTETISIISNLEELQQLVGNSLSTGASMNFSSANPPFAINPRWVKKVTLTKRQ*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0006	cloud	direct	high	266	0.996	GCA_003943095.1_01200
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	155234	156118	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	2902	3786	GCA_003943095_1_3_158	GCA_003943095_1_3_158	-	264231	.	PFAM:PF06970.10	Replication-initiation-factor	MAYGRISLEQALNSDNFYQLPKVIIGTKFYSKLKAEAKLLFMLCRDRLSVSLDSTRKGDLRFVDEAGDIFIYYSIEELAEDLGCGRAKVIKLKKELIKYSLIDEVRQGLNKANRIYVKNVITDIQILNMTFEEAQPLLNPVKSTEVSKSNFQKFENGTSRSTKNELQEVSKSDSTYIKESKTKKNKNKIILSEDEEESPSRNLEEKNLELLSRKVDKATRYDKEYIWNLVHEQLLKDNFTETTVSYILLNFEERYQYALDNMRYASSSERIAEYVFNGLLAEWNNIVRKREGIN*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0007	cloud	direct	high	884	0.999	GCA_003943095.1_01201
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	156118	156309	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	3786	3977	GCA_003943095_1_3_159	GCA_003943095_1_3_159	-	264231	.	.	hypothetical protein	MNMNQKKLRAKQRQSKNMVIVELMELTGWSRDRVIASLGYLEATRMIKFPEQGGIMLRAGEVK*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0008	cloud	direct	high	191	0.995	GCA_003943095.1_01202
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	156580	157170	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	4248	4838	GCA_003943095_1_3_160	GCA_003943095_1_3_160	-	264231	.	PF01061.24	ABC-2 type transporter	MFNELKRYFYYRKQYKFDSLCDAIYTLIFIVGIIMIFSGQTLLNILYFYIYFLVTNITLLANEELEYEIRTSQYDNLITSKYKVKRIYLRRIVAYLVWSSILFIISLFVSNVFGSSTHFVFPKMSIFGAIVFVSINLVLFLVFYMGVIKLTEKFKRVSVLLNFLNTIFLFYSGLVFPTSFETFADMLNKILSLGNN*	hhsuite_tools	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0009	shell	direct	high	590	0.998	GCA_003943095.1_01203
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	157163	157900	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	4831	5568	GCA_003943095_1_3_161	GCA_003943095_1_3_161	-	264231	.	5DO7_A	ATP-binding cassette sub-family G member	MMKDVKREFLRQIQETMQFKFNLFFANFSIFIMVSSYLHYFEESQNKFTLFCLLFTWYFTSHSITHPTFFIEDDIYDRTLISVIQSKKSVVHVLLFKILVQILIDLIKAIPIFLILSFLSDITFPASIVEIFVIVLICLLVILILYGLGFCLSSFCLTLNRTSSFTSLLSYFILFFTGILKPFDGFLGILGHIFPFYTLREFIHRPSITEVLIILWYGVVYWSIGFVLFHIFLKMAKKKGNIFHV*	hhsuite_tools	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0010	shell	direct	high	737	0.999	GCA_003943095.1_01204
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	157897	158793	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	5565	6461	GCA_003943095_1_3_162	GCA_003943095_1_3_162	-	264231	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MTDISISNLKKAFHGKVVLDIPQFTASKSEIISVLGVNGAGKSTFIKTISGLLLQDEGQVNICGYSNFSPKIHQVTKFVLESGKGYYDYLTANQNIDYFLKLNKASRSDLALNIAVLFQKLDFQQHADTLVSELSQGTRQKLSLIIALLCRPEVLCLDEPTNGLDVIAKKQLAQILLGLSKGKNTIVLLTTHDISFARDISSRVLVMDNGRIKKDDSFEHVFSRKNTWKKYEIVLPLSFQNIIEQSFQNLHYVIQDEEMIIQTQEKDVKDRLLKETDIVRFEEIEQDIEEILYEVLSK*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0011	shell	direct	high	896	0.999	GCA_003943095.1_01205
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	158884	159045	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	6552	6713	GCA_003943095_1_3_163	GCA_003943095_1_3_163	-	264231	.	.	hypothetical protein	MKISKNWFVRFEPNFQSSQKTILYNKLNGDLYELSEVYFDFINNINQKKSSLF*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0012	shell	direct	high	161	0.994	GCA_003943095.1_01206
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	159035	159904	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	6703	7572	GCA_003943095_1_3_164	GCA_003943095_1_3_164	-	264231	.	COG0535	Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family [General function prediction only]. 	MIFQKLPQLPFEVYLTGGEATLHPQFSEIVDYLTNLGILVKLHTTGVINMQSRNYILNNLSKFSSIQISIDSIKNFDKLRPNIIDKDPLERIISFVKQCKEKKYKNLLVNTVISSLNVNELDEIMEFCLCHNLFKVQLSTIFTTSKRLLVSDEIYAKHYNQIITKYSKKGLCFQNSPFCHPWSYAIKHNLKYDSPMYCPAQKTEFEIDMQGNVYPCPFLHDETHKMGNLLSDTFDEVWNSGVKELNKASWSENKKCKSCALFKDCGGGCYALAYVSQLNYDKRCILHEN*	mmseqs_cdd	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0013	shell	direct	high	869	0.999	GCA_003943095.1_01207
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	160041	160172	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	7709	7840	GCA_003943095_1_3_165	GCA_003943095_1_3_165	-	264231	.	.	hypothetical protein	MLSHILRLHLVTKGVYLMKNNNLLKISQDLGNDFDLPYYIYIY*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0014	cloud	direct	high	131	0.992	GCA_003943095.1_01208
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	160225	161184	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	7893	8852	GCA_003943095_1_3_166	GCA_003943095_1_3_166	-	264231	.	COG0535	Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family [General function prediction only]. 	MDERLLLTNWNSLYIQNDISFTDAIKPVYVGFKITENCNQRCSHCWAGKNLTINHSFDEIIAALNKIKILNPLHITITGGEPLVHEHWLDILGYAKKNFPIVELFTNAVLFSEKSIKKLSSLFGDLDFIQVSLDGLRTTYKKQRGSDDFQKVIENIKLIVKYNLNIRVNMTITHLNIEEMIDVYELVDSIGITSFSISPVYPLRRGKKLVSLVDYTQYLHKGKLIEKMHAKRKSQMNLTVIYPMEVLSEKATYTQESTYFQRFNTDLLHWTIDGRGDIFHFMDQFIYKELKVGNIYENTIEELEANDYTIQKNVLEHSN*	mmseqs_cdd	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0015	shell	direct	high	959	0.999	GCA_003943095.1_01209
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	161255	161431	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	8923	9099	GCA_003943095_1_3_167	GCA_003943095_1_3_167	-	264231	.	.	hypothetical protein	MWEFILFKVDRSIIELSNKEDIVRKLDMKPNQKLDFSVKKVDLSVAVLTRDSSKAHGH*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0016	cloud	direct	high	176	0.994	GCA_003943095.1_01210
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	161447	162301	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	9115	9969	GCA_003943095_1_3_168	GCA_003943095_1_3_168	-	264231	.	TIGR01716	transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis. [Regulatory functions, DNA interactions]	MTHFGKIFKKFRQSRGIKLKDVAKHGLSKSQLSRFERGETDLTIIKFMRALQVINMPIDEFMYAVHDFRRDELNELLERIRVYITTRDILNLKKLLIEQQEKIPEHQIFHELNIILIKIKLQDISGEDSVSEQDIKHLIDYLFSVEFWGNYEILLFANTLDVFNHETFMVLSREMVRRSDFYKEIPNNRRIISTLLLNSYITCIERCELMDAVYFEKQLKACFFIETEIYERLVFQYAKELYKLKKTNDTRSIIEMKKCIAALKLAGSNGLAETFDIHLTKLLK*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0017	shell	direct	high	854	0.999	GCA_003943095.1_01211
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	162659	162895	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	10327	10563	GCA_003943095_1_3_169	GCA_003943095_1_3_169	-	264231	.	cd08287	formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family.  The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones.  FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	MKAAVFVEPEKMEVREVARPGAVVGRVGVPHTGDINIGDYWMVNLAMAGGPASCTTYDKEVLLKAVLDGQINPGKVFT*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0018	shell	direct	high	236	0.996	GCA_003943095.1_01212
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	163137	163955	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	10805	11623	GCA_003943095_1_3_170	GCA_003943095_1_3_170	+	264231	.	PF10112.9	5-bromo-4-chloroindolyl phosphate hydrolysis protein	MPRRNYNNIRSRRWIGILLILIAVGIIIQYLIPILLSIGIGYGIYYYATHKPKKITEPSASQQIEDLKKEIRAADSRIKQLDNYLKEKSYANYQQLADQLLPQLSYIQGRANTLKKYISPEIYQRIQRKVQNVTTDIHEQLHNLHAQTSESLKPNLEELAPELLETIHNIQIDHEAILKKISQSESNNKEELTAIHQSQMEHYEDILEGYLKIKTSPKDFYNAEERLSSAKAAIEQFDLDLDETLRQLNEADLRDFDISLRILSKKEPNTEL*	hhsuite_tools	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0019	persistent	direct	high	818	0.999	GCA_003943095.1_01213
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	163974	165245	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	11642	12913	GCA_003943095_1_3_171	GCA_003943095_1_3_171	+	264231	.	PFAM:PF05816.10	tellurite-resistance	MSQEFNFDIDKIANNAISKTDRTTEIIESTETQANGQMNFLEKLTPEQQDAIIAKAPQLVDNFISDQNTLLDFGQAAVEEVNNTVNRILAEQKKLQIPQVDELLKNTNKELNGFVAKYKDTQIAELDKKPNFLEKLFKQSKNTLQEFYFDSQNIEQKMDSMAATVVKQEDLLARNIVSAEMLIEDNTKSIENLVGVISFIEATQKEAGARASTLQNEVAQLDTATLDYQTKSQELARLTEVVNTLEQQHTEYISRLYVAWATTPQMRNLVKVSSDMRQKLGMLRRNTIPTMKLSIAQLGILQQSMKSGQVANAISNANNAALQMLAETSKEVIPQMERISQNPTIAVESVTKLAESLVAQNQGIISAIDKGREKRALLEATVIKSAETINDSVKLRDQKIIQALLDQGKEIQKEVDKPTTSET*	phrogs_hmm	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0020	persistent	direct	high	1271	0.999	GCA_003943095.1_01214
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	165364	166326	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	13032	13994	GCA_003943095_1_3_172	GCA_003943095_1_3_172	+	264231	.	PRK00114	Hsp33 family molecular chaperone HslO. 	MVRGRTTKSLSYEILIFVPPPFLFYVTIKGMDKIIKTISENGAFRAYVLDSTETVRTAQEKHQTLASSTVALGRTLIASQILAANEKGDTKITVKVLGTSSLGAIITVADTKGTVKGYVQNSGVDIKKTATGEVLAGPFVGNGEFLVITDYGTGNPYHSMTPLVSGEIGEDLAFYLTESQQTPSAIGLNVLLDTNDKVKVAGGFLLQVLPGAKEEEITCFEKRIQEMPAISTLLESENHIEALLSAIYGNEPYKRLSEEELRFQCDCSKERFLNALSSLPKSDLEEMRDEDHGAEITCQFCQSTYHFDEKDLEELIRDKS*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0021	persistent	direct	high	962	0.999	GCA_003943095.1_01215
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	166313	167284	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	13981	14952	GCA_003943095_1_3_173	GCA_003943095_1_3_173	+	264231	.	COG0042	tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]. 	MTNLNTPFLIGDVKIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNKKTLHMLHIDEEEHPVSIQLFGSDEDSLARAAEFIQENTQTDIVDINMGCPVNKIVKNEAGAKWLKDPEKIYSIINKVRSVLDIPLTVKMRTGWADASLAVENALAAEAAGVAALAMHGRTREQMYTGHADLEALHNVAQALTKIPFIANGDIRTVQDAQQRIEEVGADAVMIGRAAMGNPYLFHQINHYFETGEILPDLSFEDKIQVAYDHLKRLIDLKGEHIAVREFRGLAPHYLRGTAGAAKLRGAIAQANSLVEIEALLQV*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0022	persistent	direct	high	971	0.999	GCA_003943095.1_01216
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	167355	167795	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	15023	15463	GCA_003943095_1_3_174	GCA_003943095_1_3_174	-	264231	.	PRK03624	putative acetyltransferase; Provisional	MNIREMVEADYDQVYQLWLSCAGMGLNHLDDSKEGIAQFLKRNPQTCLVAVENQIIIGAILVGFDGRRAYIYHTAVHPNYRRRGIARKLVETVLTVLDELKIHKVALVVFKRNTEGNRFWETLGFSTREDLIYRNQARNEMVRLDT*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0023	persistent	direct	high	440	0.998	GCA_003943095.1_01217
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	167842	170271	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	15510	17939	GCA_003943095_1_3_175	GCA_003943095_1_3_175	-	264231	.	PDB:4M4W_K	Replicative-helicase	MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKVYQQEGDFTIWPFSYRMKVLFLTAEQIAGAVHANNLGTEHVLLAMLFDRGSLAARILEFIGFSYEDKEGVLRMTDLRKNLEHKASWNKEDLKAIRHLNKSAAATRQTMANMMGMPPATSGGLEDYTRDLTEMAHMGLLEPVIGRDKEISRILQILSRKTKNNPVLVGDAGVGKTALALGLAQRVADGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDSTLDAANILKPALAKGTLRTIGATTQEEYQKYIEKDAALSRRFAKVTIEEPTVADSVAILQGLKKSYEDHHKVVITDSAIETAVKYAHRYLTSKHLPDSAIDLLDEAAARVQNKSPQNHVKAELSAADEALMAGDWNKVGTLLEKESQPIVYKLRVKDEDVLATLSSLSGIPVQKLTQTDAKKYLNLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFMFLGPTGVGKTELAKALAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSEDMQEVVKIMVQPLISSLTEKGIKLKFQLSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLSGELKTGQSLKVGVKAGKLKFEVL*	rep_hall_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0024	persistent	direct	high	2429	1.0	GCA_003943095.1_01218
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	170275	170736	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	17943	18404	GCA_003943095_1_3_176	GCA_003943095_1_3_176	-	264231	.	COG4463	Transcriptional regulator CtsR [Transcription]. 	MSSKNTSDSIEEYIKTLLAQAGIAELKRSEIADVFQVVPSQINYVIKTRFTESRGYIVESKRGGGGYIRIGRIEFSNHHELLCDLLHSVGEQISHQVFTDIIQLLFDEQIMTEREGNLLLATTTDRVLGTNAAQIRARMLKKILQQVDRKGKN*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0025	persistent	direct	high	461	0.998	GCA_003943095.1_01219
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	170995	171345	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	18663	19013	GCA_003943095_1_3_177	GCA_003943095_1_3_177	+	264231	.	.	hypothetical protein	MKMDWFKYTRHVLVWWFSTLFFFTIISADYVDVQVATLVACLFAPFLFEPSSIKPKTKWIIDLAIIVISVFAVLFTQTYRIAFTYSEITYLLISLIILILIDLVISHKGFTKRIVK*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0026	persistent	direct	high	350	0.997	GCA_003943095.1_01220
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	171421	172464	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	19089	20132	GCA_003943095_1_3_178	GCA_003943095_1_3_178	-	264231	.	COG0264	Translation elongation factor EF-Ts [Translation, ribosomal structure and biogenesis]. 	MAEITAKLVKELREKSGAGVMDAKKALVEVDGDIEKAIELLREKGMAKAAKKADRVAAEGLTGVYVSGNIAAIVEVNSETDFVAKNAQFVELVNETAKVIAEGKPANNEEALALIMSSGETLEAAYVSATATIGEKISFRRFAVVEKADDQVFGAYQHNGGRIGVITVLSGSDEDLAKHVAMHVAAMKPSVLSYKELSEEFIHDELAQMNHKIDQDNESRAMVGKPALPHYKFGSKLQLTDEVIAQAEEDIKAGLAAEGKPEKIWDKIIPGKMDRFMLDNTKVDQQYTLLAQVYIMDDSKTVEAFLESQGVTIAGFTRFEVGDGIEKAANDFESEVAATMAAALGQN*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0027	persistent	direct	high	1043	0.999	GCA_003943095.1_01221
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	172547	173329	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	20215	20997	GCA_003943095_1_3_179	GCA_003943095_1_3_179	-	264231	.	PRK05299	30S ribosomal protein S2; Provisional	MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKFADQAYDFMRDAAANDAVILFVGTKKQAADAVKDEAERAGQYYINHRWLGGTLTNWETIQKRVARLKEIKRMEEDGIFDVLPKKEVALLNKQRARLEKFLGGIEEMPRIPDVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMADAIIEGRQGEDNVESVEAELAATDTQADSIEEIVEVVEGTNE*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0028	persistent	direct	high	782	0.999	GCA_003943095.1_01222
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	174022	174177	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	21690	21845	GCA_003943095_1_3_180	GCA_003943095_1_3_180	-	264231	.	.	hypothetical protein	MFIKHLKNIDLIELLNQGKISEVGNKILEIFKLLIFSLTGYLFGTNANKDD*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0029	cloud	ambiguous	low	61	0.391	GCA_003943095.1_01224
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	174116	174361	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	21784	22029	GCA_003943095_1_3_181	GCA_003943095_1_3_181	-	264231	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MITALDVANTFLAKAKKEKIDISPMKLQKLIYILYKNYLKETQKKLFPDKFEVWKYGPVISDVYQAFKKYRSNRITESRKD*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0030	cloud	direct	high	245	0.996	GCA_003943095.1_01224
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	174503	175804	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	22171	23472	GCA_003943095_1_3_182	GCA_003943095_1_3_182	-	264231	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MTQKKKIKQLLAISAIFIGFIAPTVAQAAVGDQGVDWSVYQGTNGIFGYGHDKFAIIQIGGINAYGMYGQSTYETQVASAIAQGKRAHTYIWYEVGGNAALGEQVLKNFLPQVQTPKGSIVALDYESGASGSKEANTNAILHGMRMIKAAGYTPMYYSYKPYTVAHVDYNRILAEFPNSLWIAAYPDYNVTPSPNYNFFPSLPGIAIFQFTSTYIAGGLDGNVDLTGITDNGYGRKNTPKTQTPAIKEGEKADNTPKSDIKAGDTVKVNFSATNWATGEEIPEWVKGRSYQVAEVSGDKVLLAGINSWIYKRNVEIISTTNSQPQASAVPSAGSYTVQPGDTLSGIAAKYGTTYQQLAALNGINNPNYIYVGQVLKVSGQGQSSPQNVVYHTAQWGDTLSGMASKYGTTVENIQALNGLSGDLIYAGVTYRIK*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0031	cloud	direct	high	1301	0.999	GCA_003943095.1_01225
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	175782	176066	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	23450	23734	GCA_003943095_1_3_183	GCA_003943095_1_3_183	-	264231	.	PFAM:PF06946.10	holin	MQQILITAGVVAPIISAIVNVAKAQFKLDGKQVSTLALVLGVVVGLTYAATIVRGDYAVYGWGGLIAGLSAIGYYELAFKNKKGDTTDDTKKEN*	phrogs_hmm	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0032	cloud	direct	high	284	0.996	GCA_003943095.1_01226
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	176068	176298	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	23736	23966	GCA_003943095_1_3_184	GCA_003943095_1_3_184	-	264231	.	.	hypothetical protein	MAPDVVNAVVTISASLIGTFGGIVTSAKLTTFRIQELEKKVEKHNSVVERTYRLEERTNYFDERIDKLESKIEKEK*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0033	cloud	direct	high	230	0.996	GCA_003943095.1_01227
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	176310	176858	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	23978	24526	GCA_003943095_1_3_185	GCA_003943095_1_3_185	-	264231	.	PF07104.11	Protein of unknown function (DUF1366)	MKFRVANKYLREANKTFVAIRCDEPYTAYDRVLEGDHMNDNDESLIDAVLKLVATELDPTGAIAEMQQKLDKTSDATSKNRDSVERTSKLTDVLILLAISIEGGMQQDLYKKVASLLPTLTDDVRYSFGDIVSAPYPYDTNPKYPQGTPVILKFLDNWTHKGQPLQELLQKGACTTIMPKLG*	hhsuite_tools	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0034	shell	direct	high	548	0.998	GCA_003943095.1_01228
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	176879	181219	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	24547	28887	GCA_003943095_1_3_186	GCA_003943095_1_3_186	-	264231	.	PDB:3GUD_A	Neck-appendage-protein	MKRNVRIAIRDTTDTHVVGFFDNKSGVKYNAANLTQFLKGSCSVLVLTYHSKKMVAQSGQKLAFRFKDKDFWLNINSVKKTGYNIELTAYSLSLEANKEKRGPHKPASAMTIKQYIDYYDPENSFVIGINEVADKSLKLEWSGTDTILARLYSVANGFGAELEFVTELNNDYSLKRHVINIYREGDFGKDKTGMPVRVGEKLKVINYSDNMDDFYTGIRRTGKDGLTIGGLNKKIYDDKGNLLFYSSGDTLYAPQARDKYPSIARKTNDGYIVNEDSGTEYANKEALFGYMLSELKKHCELKVEYEVEGAVDGNIGDKKTLIDAQHFDPPLYVQARISEQTESLLEASDVKTSLSNYVRKSNQIANELLQKVEQLALEATPYTIKLATNNGIIFKNNQGQSTVYPTLKKGNKTVECTWQWLVDNQSFGTSATFEVRAAGMSNKLVLTAIALIDGKEVAREQVTFSNVNDGKNGSNGEKGEDGKSLRLFTTQYKYAQKFINQYSADGYTGDWSVIENTAGLKAGDSVQIRVFNTDKQCDSWIVASVSAIMGENRIKTVSKGLIEKGDQGERGPKGATGEKGDKGDPGKPADPAPINQLKQDMELTKKDLSAVKSDLLREKSESSAKIDQVKQDVGAIRNQQTTYEQTNTQNLARITGQLGDKASKSEVKQTADGIREEISHLSTASRNYILNSDMTTATDRTTGTGLPLSSDLIRTLNAERNFTLSVDVVAQNMVAKNDKKRFGISYELKFSDGSNLWTEVFQTSDTALTRISQNFVLPAGKQILSIAGGLYFQASGQIKLSRPKWGIGHNNKEWIKAVEDTDEQITAARTTFEKTAEGLKTDMAAVKSYVADDGKRREQLEQYTRTETARSAEALRKQASESYVAKSQYSEDARGVARRFEELNLNGTNLLPNTDFKNLIDVGNQFTVGGKTYKVKTLDKWYSSYNDGIPNPKTNYHGYFNETKFSETVFEFNESNGVREWKGLPIFITNDSRYTIGKYIFSADVNATGLGTHLEVGFYYYNKAGMRYFHAGLIRKAVTSVNAWSRISLELKINDDVDFSKEMGFYIYGYGFTSNSVLYFKRPKLTNTNWTPSVEDNKKYTETKLAEYKQTVDGQLAAVKQDVNGKVSQTTFDQRANQITQTVQELNDNVVKKNQIRVNENGIVSTVEKVVNGQTLASMIAQHPEWVEIIAKLLKVKADMIVNGAITADKLNVKELSALASDLGKITAGEIEFTARFRNSPSHDTWGTVPGEYNYDATVLINSSGIYSNGKIGRENKEDKTPTITPVSYFKNGELFFANLEAGHSLKYMEMNGIHPFVRGGSSLMYFGKKEDGKDALYITCRNAELYLKSDNYTDWKQSEVNNKVRWKVQGSLVLVDFNLQFDRDGDYHLADIPKQYVPSNKMFPVQAWSLDRNKDRTAQLNVGGDLHIIGAERGIPYLGQIIWTY*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0035	cloud	direct	high	4340	1.0	GCA_003943095.1_01229
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	181219	182742	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	28887	30410	GCA_003943095_1_3_187	GCA_003943095_1_3_187	-	264231	.	PDB:5LY8_A	Distal-Tail-protein	MANELIKVYFNDVELTKWITVLDGFTALGGADYDPTFHNYPILNGSEFIKTRKKLKKIPVPFYVKYEGVADYDALQTSLNVDEPKKLTFSHLPDRVFYAIPSGDLDFKEIKFSGKGIINFSIVDGLAHSKNPRYFEFKKNEQGILEAEIENNGSEEIPVNYRIKLKRESGFVGITSRYGAMQFGKIEETDSVEDKKNVLLSANGTGDFSNWTDGTIFYENKNKKVVTKMTADKNLGGRLGVLSADFTNTADGACFGAVKELNLPQQAKDWYIWARAWFETGYVSQTGAWCLSVVDSDNHFIAGMAIEKSERTRNKALVVFLMGDGAGGSRVVKSIEFSPTLWVKDNPYSLEGKDQNRNMFDLRKEGDKITYFWYGSYHSFFESKIKDKQAAKVQFFVGQYKGRNSTINELVTHHYLNDFAIYKLNVPYWRDVPNRYPTGAELFIDSTGEVNPEEKGRLYVNNLLAPDDEILGTDYFKVPPGKTKVQLLVSSFAEVESARAEIEEAWI*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0036	cloud	direct	high	1523	0.999	GCA_003943095.1_01230
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	182727	185714	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	30395	33382	GCA_003943095_1_3_188	GCA_003943095_1_3_188	-	264231	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGQAYVQIMPSAKGISGSIQSALAPEATAAGNSAGSSIGSTLVKAATGIIAAAGIGKAFSAAINEGAALQQSLGGIETLFKGSADKVKAYANEAYRTTGLSANTYMENVTGFSASLLQSLGGDTNKAAEIANMAMVDMSDNANKMGTSMDRIQDAYQGFAKQNYTMLDNLKLGYGGTKTEMERLLADATKLTGVKYDINNLSDVYQAIHAIQGKLDITGTTAKEAATTFSGSFASMKAAAQNVLGKLALGEDIMPSLKALAETTSTFLFKNFIPMVGNILRGLPTVIGAVLKEGIAAIFGDGIAKSITDKIYNIYANVSGVLNALSDMIFGSGNKADNKDFLKSYLGLDEKLASRIVNIGENIRVTFVNIGSTIGNIAGIIGSFVSDLLGIAGGEKSVNAIGSEFESVTGFIKSASGAIKNFTTWLKSNETAMAVLKSTMAGLLAGFLAFKTVATIKAIISGFTVAISAAKAAVLAFNAAIVANPIGAIAAAIAAVVTGLVWFFTQTKIGKKIWSGFVSWIKQAWQGTADFFVGIWSGISDGAKNLWNGVTDTWNAVVDTIKNAWDGIVEFFSNLWSGITSGVSAAWTAITQTIMTIVQPFIDGFINIWNGIKDGLSQMWEGVKMIFQGAWDFIKSIVLGAVLIVLDIITGNFGKLGEDLGLIWQGISDAVSTIWEGIKTYFMGVVSAIVGYGQSVFENFSNALAAIWDFIKNTASVAWEWIKTTISNLITGLVQGAQNILNGFMSFLSSLWNFITSVAVGAWNGLKSSVQAIINGIVQGAQNAWNSMKQGVSNLVSGIANIFNGLRNINLWSAGRAILDGFLGGLKSAWQGVTDFVGGIAGWIRDHKGPIEYDRKLLIPAGRAIMNGLDEGLRNQFRSVKSTVSNMAGEITDSLEDQPLSIGLSGFESVNPQMDVSNAILTTKMANVAQPQSREIELLSIIAKLANRPTIVSQELDKREISRIIAEPVAEEQARKQAILNAVDGLGWQMN*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0037	cloud	direct	high	2987	1.0	GCA_003943095.1_01231
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	185714	186088	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	33382	33756	GCA_003943095_1_3_189	GCA_003943095_1_3_189	-	264231	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIKADENALICDLAETYHIYDYRQLPALKVAVFSIGLRDDSRIKMKLSNQKVSTETLLLAGIFDRLSILAWFKTADGQKGTNRPESIVEQLTAEPKERKEMVFTSGEEFERARKEILEKIGGEH*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0038	cloud	direct	high	374	0.997	GCA_003943095.1_01232
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	186103	186441	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	33771	34109	GCA_003943095_1_3_190	GCA_003943095_1_3_190	-	264231	.	.	hypothetical protein	MSKSKKNKVKTPSKQVTKMNLPELNSNVIKGTTSTGFKFEVLKERLANYELVEAIAEVDENPLVLPKVVKNLLGPQAEDLKEHVRDESGLVPLNRLMAEIEEIFNSKTSLKN*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0039	cloud	direct	high	338	0.997	GCA_003943095.1_01233
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	186444	186995	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	34112	34663	GCA_003943095_1_3_191	GCA_003943095_1_3_191	-	264231	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MSKSSNVTTAKPKVGGAIYSAPLGTELPTDATTALNAAFKSLGYISEDGMTNTNSPESEDIKAWGGDVVNSSQTEKKDTFGFTLIEALNVEVLKEVYGSENVSGDLSTGIEVKANSKELKDHCLVAEIVMKNGVLKRIVVPQGKVTEIGEISYKDGETVGYQTTVTAFPDKDQNTHYEYIKGA*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0040	cloud	direct	high	551	0.998	GCA_003943095.1_01234
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	187011	187346	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	34679	35014	GCA_003943095_1_3_192	GCA_003943095_1_3_192	-	264231	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGHLHVPSFFEHETKMPDSFILIEKTSGSERDHSKSATFAFQSYASSMQKAAELNEKVKEVVKEMVELNSISGVHLNSDYNYTDTETKRYRYQAVFDINYF*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0041	cloud	direct	high	335	0.997	GCA_003943095.1_01235
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	187347	187574	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	35015	35242	GCA_003943095_1_3_193	GCA_003943095_1_3_193	-	264231	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MKFKLNRAGVADLMKSGAMQTVLNKHASNIKNRCGDGYEQDVYVGRNRANAMVSAKTTKAKKDNLKNNTLLKAVR*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0042	cloud	direct	high	227	0.996	GCA_003943095.1_01236
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	187564	187905	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	35232	35573	GCA_003943095_1_3_194	GCA_003943095_1_3_194	-	264231	.	PFAM:PF10665.8	Minor-capsid-protein	MARIKGITVTLIDKVKTGQDDFGHSIFEDKEIEVENVLVSPTTSDDITTQLNLSGRKAAYTLAIPKGDTHDWENKEVRFFGKRWQVFGLPLEGIEDLIPLDWNKKVTVERYEI*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0043	cloud	direct	high	341	0.997	GCA_003943095.1_01237
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	187892	188287	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	35560	35955	GCA_003943095_1_3_195	GCA_003943095_1_3_195	-	264231	.	PFAM:PF09355.9	head-to-tail-adaptor	MKNFATVDELQELWRPLKLDEQKRAEALLKVVSASLRVEAEKVGKDLDKLVVVNESYACVVKSVVVDVVARTLMTSTDQEPMTQVSEGALGYTWSGSYLVPGGGLFIKDSELKRLGFKKQRYGVIDIYGTD*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0044	cloud	direct	high	395	0.997	GCA_003943095.1_01238
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	188293	188499	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	35961	36167	GCA_003943095_1_3_196	GCA_003943095_1_3_196	-	264231	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MEYINKETLASIETDCELGGDWVPASELKEEYKLTVPEIKSKLDELGIEYDSKAVKSDLIALLEQHEG*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0045	cloud	direct	high	206	0.995	GCA_003943095.1_01239
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	188501	189391	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	36169	37059	GCA_003943095_1_3_197	GCA_003943095_1_3_197	-	264231	.	PDB:3JB5_B	Major-Capsid-protein	MATLQSGDMFPVQTVQDIFSKVKGHSTLAKLTTQEPIPFTGTETFVFNLEGNAEIVGEGNPSGAGNATMKPKVIKPVLITYQARVSEEFVHCSEEKQLSYLKSFIDGLAKKVAQAIDIASFHGLEPKSMTDASFKATNSFDGLITGNVVTFEADKIDENIDAAVATITANDCEVNGIALSPAAGAALGKIKVNGVVQYPEYRFGQNPDSFYGMKSDVNKTLTTVASTAKKDHVIVGDFENAVKWGYAENIPLEIIEYGDPDGAGRDLKRYREVCLRTEVYAGWGILDEQAFARVEA*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0046	cloud	direct	high	890	0.999	GCA_003943095.1_01240
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	189396	189860	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	37064	37528	GCA_003943095_1_3_198	GCA_003943095_1_3_198	-	264231	.	PDB:6B0X_d	Major-Capsid-protein	MRMSEFKAITTQEEFDAAIKSRLVREKEKYSDYDQLKSRVAELETENGGLKSSIEASNQSKADADKQVADLQSQIAGFETEKLRTRVALEHGLPLDLAARLQGDDEEALKADAEKLAGFMKIKKPVPPLKGNEPNLGNDEDAALKGMLRNMRGE*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0047	cloud	direct	moderate	459	0.987	GCA_003943095.1_01241
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	189936	191354	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	37604	39022	GCA_003943095_1_3_199	GCA_003943095_1_3_199	-	264231	.	PFAM:PF03354.14	Large-Terminase	MARTKKKLGNQNPTQSVILPYTKKKSLYKEAIDIYERTGLSSYPWQQNLLKAIMAVDKTGVWVHQKFGYSIPRRNGKSEILYILELWGLEHGLNMLHTAHRISTSHSSFEKVKRYLEKMGYEDGEDFNSIRAKGQERIELYKSGGVVQFRTRTSNGGLGEGFDLLIIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTPVSSGTVFTKYREACLFGKGKYSGWAEWSVNEEKEIDDVEAWYNSNPSMGFHLNERKIEAELGEDKLDHNVQRLGFWPTYNQKSAISETEWNALEVEEIPKLSGRLFVGIKYGQDGTNVSMSIAVRTADKRIFIETIDCQSVRNGNHWIVAFLKQADVSQIVVDGASGQKVLDDELKDYKIKNVILPTVKEIITANSLWEQGIYQHTICHNGQPSLAKVATNSDKRNIGSNGGFGYRSHFSDMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0048	cloud	direct	high	1418	0.999	GCA_003943095.1_01242
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	191417	191668	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	39085	39336	GCA_003943095_1_3_200	GCA_003943095_1_3_200	-	264231	.	pfam19791	Family of unknown function (DUF6275). This family of proteins is functionally uncharacterized. This family of proteins is found in Firmicute bacteria and their phage. Proteins in this family are approximately 90 amino acids in length.	MLEKAKQLASQEFSRLSGREIKAEECFIVWFSKTLQNWKALVSTNAISSNEKCGDYAEITHNGDKKETYVDVYAKVSNRAIKD*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0049	cloud	direct	high	251	0.996	GCA_003943095.1_01243
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	191671	191922	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	39339	39590	GCA_003943095_1_3_201	GCA_003943095_1_3_201	-	264231	.	PFAM:PF14083.5	nucleotide-pyrophosphohydrolase	MKYRKKPVVIEAVKWTGNNVKDLADFMGESQINYEIETRKMFIRTLEGIMEASVGDYIIKGVQGEFYPCKPDIFAETYEKTEE*	phrogs_hmm	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0050	cloud	direct	high	251	0.996	GCA_003943095.1_01244
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	191976	192275	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	39644	39943	GCA_003943095_1_3_202	GCA_003943095_1_3_202	-	264231	.	.	hypothetical protein	MSNNDDFLEELSELANQEDDRIWSESHLDGYSDFYKENEASKVWWIDKLDAIGEHLFSFDQKKIYNLFVDYPHNMMDKEVEIFDKENPYWKEFLSNRKK*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0051	cloud	direct	high	299	0.997	GCA_003943095.1_01245
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	192265	193659	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	39933	41327	GCA_003943095_1_3_203	GCA_003943095_1_3_203	-	264231	.	PFAM:PF06152.10	minor-head-protein	MDKDIFPELIKSIQDDFERAYGKSEVVRKSFEALKSKKATYTTVNDFAIEIGEILSKALGASLNADKLPDGKLYYNIAKRLLEDTLGRNYELVSSYASDVQKQLNERANIHLKTQIPALNQDRIDGIVNRVSSEQDFDDIKWILQEPIVNFTQSIVDDSIEKNAEFHHKAGLQPEIVRKSVAKCCDWCQEVQGIYKYPRVPKDIYRRHQRCRCIVDYDPKNGKVQDVWSKIWRKQKDSDKIKERKGLNKEENISVVRKSALQHGIKVNPIKRSKVKKTEEAIIKAVGGGDQTKGSCSSLALAYIGNKAGFDVLDYRDGKSRTFFASMLNIKNISELPNVHSHVVTDTNDFTAVKKLIGQMQDDKEYYLGTGKHAAIVRKKEGRFQYLELQAPFEGNGFKPITNAVLKERFGCQRSHSVYGQKLQVPNVLIDSDSLGENEEFQKILGFINTKKGQQNKGDKGYVK*	phrogs_hmm	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0052	cloud	direct	high	1394	0.999	GCA_003943095.1_01246
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	193652	194923	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	41320	42591	GCA_003943095_1_3_204	GCA_003943095_1_3_204	-	264231	.	PDB:2JES_G	Portal-Protein	MSLKGMSYLRKKLLNYKLRVDMRYKQYAMKYNDISVGITIPAEVRMKYRSVLGWAAKGVDSLADRLVFREFANDDFEANEIFNQNNPDVFFDSAVLSALIGSCCFVYISQGATEIPRLQVIEASNATGVLDPITGLLTEGYAVLQRDDYDNPLLEAYFTEDMTWYYPKNEKPYSIHNPAGVPLLVPVIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERADVTAEFYSYPQKYILGMDPSADAMDKWKATVSSLLRIDKDEEGDKPTVGQFTTSSMTPFTEQLKTAAAGFAGEMGLTMDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVAVCLRDEFHYLRSQFVNTNIKWEPLFEADASTLTMIGDGAIKLNQAIPGFLDGEAIRDLTGVKGSGNVAPALPSEKEAVDG*	hallmark_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0053	cloud	direct	moderate	1209	0.95	GCA_003943095.1_01247
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	195027	195362	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	42695	43030	GCA_003943095_1_3_205	GCA_003943095_1_3_205	-	264231	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MEMRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKSLRYPHPLSPVIDHVIPVNKNGHPSDIANLQLAHWQCNRQKSDKLYAEERAVGSVVIGNRNLPQSINWTSYRS*	mmseqs_cdd	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0054	cloud	direct	high	335	0.997	GCA_003943095.1_01248
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	195540	196106	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	43208	43774	GCA_003943095_1_3_206	GCA_003943095_1_3_206	-	264231	.	CDD:cd01192	site-specific-tyrosine-recombinase	MRRVEPIRDVDDIQRLKDYLKDRNERDYMLIVTGLYSGMRISDIIPLQVKQVTGEHIEIKERKTGKTKRFAINPELRRALNNYIKNNDLKGYDFLFQSRKRKRVDGVRITHIGRVAAYQIIKSAAESIGLQNIGTHSLRKTFGYHHYKKNQNVAILMEIFNHSSPDITLRYIGYKQDELDSSMIDFSY*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0055	cloud	direct	high	566	0.998	GCA_003943095.1_01249
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	196214	196651	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	43882	44319	GCA_003943095_1_3_207	GCA_003943095_1_3_207	-	264231	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MPFFPEINEVKTKENARKILRGYPRWRRVANDRNGQRVTTIYSFTPRNPNFTNNSQVEKLAIRKVDAEIELDAIEQAVSNLHNPFYRRILFEKYLKSTPEKDFSIYQNLAISESSYYDLLDKALIAFAEIYRNGEQVAIYGENPE*	mmseqs_cdd	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0056	cloud	direct	high	437	0.998	GCA_003943095.1_01250
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	196656	196847	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	44324	44515	GCA_003943095_1_3_208	GCA_003943095_1_3_208	-	264231	.	.	hypothetical protein	MAIAKKCDRCGEFHDVYNENDDPSNINSLVPANADKFNKRYTQKIINLCPNCKDSFLNWLKMG*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0057	cloud	direct	high	191	0.995	GCA_003943095.1_01251
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	196861	197004	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	44529	44672	GCA_003943095_1_3_209	GCA_003943095_1_3_209	-	264231	.	.	hypothetical protein	MYLKYKHMQIVKHALQYYIQRAEERATGSAVIGNRNLPQSCDWILII*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0058	cloud	direct	high	143	0.993	GCA_003943095.1_01252
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	196995	197513	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	44663	45181	GCA_003943095_1_3_210	GCA_003943095_1_3_210	-	264231	.	.	hypothetical protein	MTKLIGFGRCLGKTTMAILESHATGNRILVANQKMAKNIFGMAQELGYAIPYPICVNDLVRTPHAYSSEEHLIIDNVEMVLQEMIYNPVDTITFDNRSIDPEDRYAEEITELKKELVACYREKEEDQATIEDLKEKCVDLMLENADYVWDEMARSAMAKRANTRRWRSRGCI*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0059	cloud	direct	high	518	0.998	GCA_003943095.1_01253
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	197506	197889	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	45174	45557	GCA_003943095_1_3_211	GCA_003943095_1_3_211	-	264231	.	.	hypothetical protein	MNEEVLNELKKLLGLFPKSYINQNLEVILIPKTNTYFSLEGVSSRRDIIAKLLMWCTRTISKERPYKQELRNFQYRYDNTVRLGRYVGKIITTEMVDLIYQKLGNGVRPELTYKFIDSDFDMEVLND*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0060	cloud	direct	high	383	0.997	GCA_003943095.1_01254
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	197899	198315	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	45567	45983	GCA_003943095_1_3_212	GCA_003943095_1_3_212	-	264231	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVVLVGRMTRDAELRYTPQNQAVATFNLAVNRNFKNQSGEREADFINIVIWRQQAENLANWTRKGMLIGVTGRIQTRSYENQQGQRVYVTEVVADSFQVLEKRDNSANQSSMDSQMPPNFGDSQPMDISDDDLPF*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0061	persistent	direct	high	416	0.998	GCA_003943095.1_01255
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	198308	198754	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	45976	46422	GCA_003943095_1_3_213	GCA_003943095_1_3_213	-	264231	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPKFRGRSTVEDDKGKWVYGHLLIDNKRALIINRIIEANDEYVSIGDWCSIDMKTIGQSTGVFDRNGTEIFEGDIIDTTDYEGGLSSVGNPLVKVERDKYGFVVTGDFPTSPITLKEFEAGRKFAGVEVIIAGNIYENPELVEVIDD*	mmseqs_cdd	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0062	cloud	direct	high	446	0.998	GCA_003943095.1_01256
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	198738	199241	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	46406	46909	GCA_003943095_1_3_214	GCA_003943095_1_3_214	-	264231	.	PFAM:PF11753.7	nucelotide-kinase	MKCYSEQIADLAFKKSGLEACRTLPDQAFHKTIEQDVINKPTHYQGRYGMESIEILRNFMTDEQLAGFYLGNSLKYLIHHQKKNGLEDLKKARKNLDWLIEEMEEIEQMEDKELENIAFALQLGQLVLYTAKSIIKDDNLLRSEGHFMLDDRKFKIIVEEVVNDTKI*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0063	cloud	direct	high	503	0.998	GCA_003943095.1_01257
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	199243	199560	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	46911	47228	GCA_003943095_1_3_215	GCA_003943095_1_3_215	-	264231	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MISKKQYMVSWCITTLIYLIIGGTFAFWNRNLRIENKRLKENQVIIYRVDNAGAAMIGKITEKKVIQGHYTVTAGAYGKFLVTEEQYNDISVGDEIPNYLKGRGN*	mmseqs_cdd	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0064	cloud	direct	high	317	0.997	GCA_003943095.1_01258
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	199560	200045	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	47228	47713	GCA_003943095_1_3_216	GCA_003943095_1_3_216	-	264231	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MTKTLEEKVEQWFIDRNLHEANPVKQFEKLMEETGELFEGIAKDKPTLIKDALGDMQVVLIGLEQQIKNGAEIEASPQEMELLLLASSLGELAQKLHKHIFHSETQLPFIRPELLSLHSSIHAVAIHNLTTADSCLQLAYEEIKDRKGKMIDGVFVKEADL*	phrogs_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0065	cloud	direct	high	485	0.998	GCA_003943095.1_01259
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	200038	200934	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	47706	48602	GCA_003943095_1_3_217	GCA_003943095_1_3_217	-	264231	.	PFAM:PF09681.9	replisome-organiser	MANVNKRYYWIQLAKDFFKSKEMKLLRKIAGGDTHTIIYLKMMLMSLEDGGRIFFDGVADNLAEEIALVIDEAVEDIKITLIFLESKGLLTRNSDREYFLEQVPEMVGSETAGARRVRKHREQQKALQCNTGETKCNGDIEIDTEKDKDIKKDIDKDIKKDKQKFVQEVEANLGRGLVKFEFDMINDYLLNQKVSTELFIEAVKIAVANNVRKFNYIARILDNWTNQGIKTPEQAFQDQRDFQARKNNKAMSASQKTGGNNPEWSNPDYKNETSPEKQAELERQKQELLKKMEKKQND*	rep_hall_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0066	cloud	direct	high	896	0.999	GCA_003943095.1_01260
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	200947	202329	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	48615	49997	GCA_003943095_1_3_218	GCA_003943095_1_3_218	-	264231	.	PFAM:PF14284.5	PcfJ-like-protein	MKHEQCKREAERRLKPPKAFWDWCYSQIRTYKWTNKNQTIVSSDRPLGYCVEKRLTKSSRLTFYDKTYFFSIVLCTAKRIEVQSYEFTSRVDNGHQTVKHALANLERFENDRHIKIGRDYTNRYLPFLIHNFVGGSPYTGNKFYPNNWNSRLKEVSELKYIQFDHLNYWEIERMYKYKFEIEFAQKINAHRLADEIMHPGNWIRNRWKSAVDMRTLNRKWLQKNKQFFKNSDRSFRDFELGRRIQQRNGKLVSGIEQFLDFQDIKKIPTNIGINKFQNWVIKNKVDFQEYTDYLNMLEQMGIEPEGDAMIVPKDFKGMHQHTCELYNQFLAEQRRLAREEETRAKKKREKQLEAEFKRRADLDRVVEGYSFHIPSRVAELIYEGKKLHHCVSSYTERHLKGHTMIVFVRLSSSPNTPLYTLEVKSGEIVQFRAKYNHDVPNEVWDVAKKWLQVTKQAKTA*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0067	cloud	direct	high	1382	0.999	GCA_003943095.1_01261
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	202326	202760	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	49994	50428	GCA_003943095_1_3_219	GCA_003943095_1_3_219	-	264231	.	PF14058.6	PcfK-like protein	MSSDIKQQALDKMLEEMNQEHSPSEDRIHNWICEQDDDELFQGILKDGYTIKCSLDYAKGKAREFAKNGVACIDDVTVFRWVREYFLSNSKLENIKQVPVESVKKVNDKLNVVKAAVPKPTNKKVKKEKGVVETQMSIFDFLDE*	hhsuite_tools	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0068	cloud	direct	high	434	0.998	GCA_003943095.1_01262
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	202792	203010	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	50460	50678	GCA_003943095_1_3_220	GCA_003943095_1_3_220	-	264231	.	.	hypothetical protein	MNNLQIIAVGTVVSVILIESLIMNFKLKKALRAKKSAETVITHPAAQAGFIDYKTGRRVDINPKTRKEVFVD*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0069	cloud	direct	high	218	0.995	GCA_003943095.1_01263
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	203034	203318	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	50702	50986	GCA_003943095_1_3_221	GCA_003943095_1_3_221	-	264231	.	PFAM:PF09035.9	Excisionase	MNDLMNQLLDQFEAGLMDRALKVMHVVTDEKRRYPMELNKSQCAEMLLGTKDTGTFDERFYRHKDFPRIEGKRDKFPRDAVIEWYHKNWQRTAI*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0070	shell	direct	high	284	0.996	GCA_003943095.1_01264
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	203340	203702	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	51008	51370	GCA_003943095_1_3_222	GCA_003943095_1_3_222	-	264231	.	.	hypothetical protein	MVVSRDMTELEIKVLNGIKNGASFDLPIQASELRISLGLSKRMLEEVIESLRVNFRQPIIAKRTQPSGYYLPRNEEERQAGLAPYKRQIETEQKNLAAVMAVDLEAFWQRKKPDGNQAQK*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0071	shell	direct	high	362	0.997	GCA_003943095.1_01265
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	203711	203908	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	51379	51576	GCA_003943095_1_3_223	GCA_003943095_1_3_223	-	264231	.	.	hypothetical protein	MSNVAVNVVRIEPDAYDAAVKFANENDLKISKVISMFVRYGVENVELKEVDVRTEKFCIGDQVIN*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0072	cloud	direct	high	197	0.995	GCA_003943095.1_01266
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	203909	204106	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	51577	51774	GCA_003943095_1_3_224	GCA_003943095_1_3_224	-	264231	.	PFAM:PF10078.8	transcriptional-repressor	MSQQQKLWVALVKERLYNLGWSQTQLAESVGVAKATISELFKYGKGSRQLKQKISEILEIESEEN*	phrogs_hmm	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0073	cloud	direct	high	197	0.995	GCA_003943095.1_01267
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	204568	204927	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	52236	52595	GCA_003943095_1_3_225	GCA_003943095_1_3_225	+	264231	.	PDB:1PRA_A	Repressor-protein	MFITFERIKELAKKQGLSINSLEQKLGYSRNTIYALKRNQPGAEKLQQIADYFHVSTDYLLGRTDNPKIADDKEKFYFQGQEVDVEELASTAMRFNGKPLTDKDKKAIQNIIEIYLRKQ*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0074	cloud	direct	high	359	0.997	GCA_003943095.1_01268
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	204942	205328	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	52610	52996	GCA_003943095_1_3_226	GCA_003943095_1_3_226	+	264231	.	PDB:3DTE_A	IrrE-protein	MTEKELCSELGIKFFVFEDTLYKDEAFYIPGLRTMFLSDKVMEEDRVKTILHELGHRNHLPHLYNIFREKYEAQANRNMIHHLMKAELEEYEDKEQFNYLAFMQKYKLKTIADETMVKEEYYNLVNII*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0075	cloud	direct	high	386	0.997	GCA_003943095.1_01269
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	205344	205520	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	53012	53188	GCA_003943095_1_3_227	GCA_003943095_1_3_227	+	264231	.	.	hypothetical protein	MKIGIRKPSLKRSLKARTTSKWKRQMKKAVILGYGQKGIGWIKNPKKALYNKVYHKTT*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0076	cloud	direct	high	176	0.994	GCA_003943095.1_01270
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	205705	205974	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	53373	53642	GCA_003943095_1_3_228	GCA_003943095_1_3_228	+	264231	.	PF13783.6	Domain of unknown function (DUF4177)	MGFFDKAKEEGSFSTASGIENLHYVVLQVTLKEKFIGTGSGNLTELENVINKQAKKGYRLHTIATSNGGSKGLVGGDRIQATMVFEKIY*	hhsuite_tools	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0077	cloud	direct	high	269	0.996	GCA_003943095.1_01271
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	206094	207164	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	53762	54832	GCA_003943095_1_3_229	GCA_003943095_1_3_229	+	264231	.	PDB:1Z19_B	Integrase	MASIRKRGKYFEYRVVYHDSLGERHEASCGGFKTKAQARAAGQKREVELRNSPMSNNEVTMLDYYKAWAQLYKKPYIKKKTWNSYKQTENHIIKYFGQIKLKDMTPVRYQEFLNEFGSKYAQDTIERTHYHIKSAVKIAVRDQLIPSNFTEGAVVKSQKEKKPEAESYLEEDEYFYVISKTQENPQYISHMTLYILAISGMRFAEAMGLTWDDIDFKNQVFRVENTWDYSDTEDFSETKNEQSIREIPFNDNVAKVLKNYKKNYWRENKQGRVLFGASNRATNTALKRMVKREVHPHTLRHTYASYLIFKEVPVASISKLLGHKSILITLKVYAHQFEKMKEKHHSEVRNILSEIH*	common_virus_hmm	common_virus	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0078	shell	direct	high	1070	0.999	GCA_003943095.1_01272
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	207510	208295	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	55178	55963	GCA_003943095_1_3_230	GCA_003943095_1_3_230	-	264231	.	.	hypothetical protein	MKTIFENQEVKLDRKNGSTVIVRNDGFSYLDAKSEKKNLNISFDKVSTILSLRYCNSNSSYNLIFRDKNGKNMAEFDTDTTIYNNDHNILETKAILLAFAASKLTKDFPNNLRDLDIILAFSMKEKEIRIASGIIYGSKHKISIEDIRRVQCVTNGTISNLALYKSDKKTFWDIPDMKVPCNEITLPLFEAIVTKNTGKGIDFSRGNGFDQKTSEFMIIRYMDANFFVNSDGTLDKEWQKQIYDRMSAYKYDLATLLEGVL*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0079	persistent	direct	high	785	0.999	GCA_003943095.1_01273
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	208348	208548	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	56016	56216	GCA_003943095_1_3_231	GCA_003943095_1_3_231	-	264231	.	.	hypothetical protein	MIRLQKLISAKLQSYNFLKNIKRVGKNFPLFLYAILAYLQVLIFSLRAYALDNGRFLVIENEYIIL*	.	hypothetical_protein	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0080	persistent	ambiguous	low	46	0.229	GCA_003943095.1_01274
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	208502	209038	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	56170	56706	GCA_003943095_1_3_232	GCA_003943095_1_3_232	-	264231	.	COG0250	Transcription antitermination factor NusG [Transcription]. 	MDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQEFDIHVKVGDTVRIIDGAFADYTGKITEIDNSKVKMIISMFGNDTVAEVNLSQIAEL*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0081	persistent	direct	high	536	0.998	GCA_003943095.1_01274
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	CDS	209184	209360	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	56852	57028	GCA_003943095_1_3_233	GCA_003943095_1_3_233	-	264231	.	PRK07597	preprotein translocase subunit SecE; Reviewed	MKFIRDTFQVLKDTTWPTRKQSWVDFISVMEYTAFFVVIIYLFDLFVTRGLVRLLNIF*	mmseqs_cdd	nonviral_gene	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_CDS_0082	persistent	direct	high	176	0.994	GCA_003943095.1_01275
GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote	cenote	tRNA	173627	173698	GCA_003943095.1	RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095.1_RJOM01000003.1	GCA_003943095.1|RJOM01000003.1	GCA_003943095_1_3	GCA_003943095_1_3@C13	21295	21366	tRNA-Cys	tRNA-Cys	+	264231	.	tRNAscan-SE score: 55.6	Cys	NA	tRNAscan-SE	.	C13	57028	152333	209361	GCA_003943095.1|RJOM01000003.1@region_152334_209361@tool_cenote_tRNA_0001	.	.	.	.	.	.