core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	142949	143230	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	1	282	GCA_003943125_1_3_146	GCA_003943125_1_3_146	-	324150	.	.	hypothetical protein	MNFTDLSNKEQEKIMISEIIRNLKKLGDYATKRELLDAIKKGENTIDENFFEEEKVSQKSGKFINLVITLLIFLPKVCLPRVIFLNQSNRLLN*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0001	persistent	direct	high	281	0.996	GCA_003943125.1_01134
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	143485	144777	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	537	1829	GCA_003943125_1_3_147	GCA_003943125_1_3_147	-	324150	.	PRK01117	adenylosuccinate synthetase; Provisional	MTSVVVVGTQWGDEGKGKITDFLSANAEVIARYQGGDNAGHTIVIGGKKYKLHLIPSGIFFPEKISVIGNGMVVNPKSLVHELAYLHEEGVTTDNLRISDRAHVILPYHIELDRLQEEAKGDNKIGTTIKGIGPAYMDKAARVGIRIADLLDKDIFRERLERNLAEKNRLFEKLYDSAAIRFDDMFEEYYAYGQQIKQYVTDTSVILNDALDQGKRVLFEGAQGVMLDIDQGTYPFVTSSNPVAGGVTIGSGVGPSKIDKVVGVCKAYTSRVGDGPFPTELFDEVGNRIREVGHEYGTTTGRPRRVGWFDSVVMRHSRRVSGITNLSLNSIDVLTGLDTVKICVAYDLDGERIDYYPASLEQLKRCKPIYEELPGWSEDITGVRSLEELPENARNYVRRVSELVGVRISTFSVGPDREQTNILESVWSSL*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0002	persistent	direct	high	1292	0.999	GCA_003943125.1_01136
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	145067	145834	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	2119	2886	GCA_003943125_1_3_148	GCA_003943125_1_3_148	+	324150	.	PRK02471	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB. 	MNINHLLEKIAVDSLILQATFEKDKSIVIKPKSTNFGLGISIFQEPTNLDSSQKALEIAFSEDSSVLGEEFIAGTEYCFFVLDGKCEAVLLRLPANVRGDGRHTIRELVATKNANPLCSRDHRSPLERIKLGEIELLMLAQQGYKADDILPKGVQVFLRRNSNISTGGDSVDVTEIMHASYKELATETATAMGAWACGVDLIISDSTLPASKKESNCTCIELNFKPYIYMYTYCAEGPGQSITPNILAKLFPEIY*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0003	persistent	direct	high	767	0.999	GCA_003943125.1_01137
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	145921	146478	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	2973	3530	GCA_003943125_1_3_149	GCA_003943125_1_3_149	-	324150	.	PFAM:PF06852.11	acetyltransferase	MSLTSQIITAEFPDLEKVEQLNTEAFPEEERAPLSELLRYGDGEYSHFFAFYDGNEFVGFAFSVYNERAFYISFFAIMPHLRSHGYGGKIIDKLVDFYQRTMVLEVERLDEPCDNLEQRKARMDFYKRNGFRSSHAYLEYDGLSFEILYKGPFFDEEAYRDIFKKIQEDGYFEFEIKHGHGRDWE*	phrogs_hmm	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0004	persistent	direct	high	557	0.998	GCA_003943125.1_01138
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	146710	147300	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	3762	4352	GCA_003943125_1_3_150	GCA_003943125_1_3_150	-	324150	.	PF01061.24	ABC-2 type transporter	MFNELKRYFYYRKQYKFDSLCDAIYTLIFIVGIIMIFSGQTSLNILYFYIYFLVTNITLLANEELEYEIRTSQYDNLITSKYKVKRIYLRRIVAYLVWSSILFIISLFVSNVFGSSTHFVFPKMSIFGAIVFVSINLVLFLVFYMGVIKLTEKFKRVSVLLNFLNTIFLFYSGLVFPTSFETFADMLNKILSLGNN*	hhsuite_tools	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0005	shell	direct	high	590	0.998	GCA_003943125.1_01139
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	147293	148030	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	4345	5082	GCA_003943125_1_3_151	GCA_003943125_1_3_151	-	324150	.	5DO7_A	ATP-binding cassette sub-family G member	MMKDVKREFLRQIQETMQFKFNLFFANFSIFIMVSSYLHYFEESQNKFTLFCLLFTWYFTSHSITHPTFFIEDDIYDRTLISVIQSKKSVVHVLLFKILVQILIDLIKAIPIFLILSFLSDITFPASIVEIFVIVLICLLVIFILYGLGFCLSSFCLTLNRTSSFTSLLSHFILFFTGILKPFDGFLGILGHIFPFYTLREFIHRPSITEVLIILWYGVVYWSIGFVLFHIFLKMAKKKGSIFHV*	hhsuite_tools	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0006	shell	direct	high	737	0.999	GCA_003943125.1_01140
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	148027	148923	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	5079	5975	GCA_003943125_1_3_152	GCA_003943125_1_3_152	-	324150	.	COG1131	ABC-type multidrug transport system, ATPase component [Defense mechanisms]. 	MTDISISNLKKVFHGKVVLDIPQFTASKSEIISVLGVNGAGKSTFIKTISGLLLQDEGQVNICGYSNFSPKIHQVTKFVLESGKGYYDYLTANQNIDYFLKLNKASRSDLALNIAVLFQKLDFQQHADTLVSELSQGTRQKLSLIIALLCRPEVLCLDEPTNGLDVIAKKQLAQILLGLSKGKNTIVLLTTHDISFARDISSRVLVMDNGRIKKDDSFEHVFSRKNTWKKYEIVLPLSFQNIIERSFQNLHYVIQDEEMIIQTQEKDVKDRLLKETDIVRFEEIEQDIEEILYEVLSK*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0007	shell	direct	high	896	0.999	GCA_003943125.1_01141
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	149014	149175	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	6066	6227	GCA_003943125_1_3_153	GCA_003943125_1_3_153	-	324150	.	.	hypothetical protein	MKISKNWFVRFEPNFQSSQKTILYNKLNGDLYELSEVYFDFINNINQKKSSLF*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0008	shell	direct	high	161	0.994	GCA_003943125.1_01142
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	149165	150247	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	6217	7299	GCA_003943125_1_3_154	GCA_003943125_1_3_154	-	324150	.	COG0535	Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family [General function prediction only]. 	MKNNNLLKISQDLGNDFDLPYYIYTKVKTDTNEKVSAPLKIGLKLTNACHFRCPYCFVYKDNDYVDFDNLKLIFQKLPQLPFEVYLTGGEAILHPQFSEIVDYLTNLGILVKLHTTGVINMQSRNYILNNLSKFSSIQISIDSIKNFDKLRPNIIDKDPLERIISFVKQCKEKKYKNLLVNTVISSLNVNELDEIMEFCLCHNLFKVQLSTIFTTSKRLLVSDEIYAKHYNQIITKYSKKGLCFQNSPFCHPWSYAIKHNLKYDSPMYCPAQKTEFEIDMQGNVYPCPFLHDETHKMGNLLSDTFDEVWNSGVKELNKASWSENKKCKSCALFKDCGGGCYALAYVSQLNYDKRCILHEN*	mmseqs_cdd	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0009	shell	direct	high	1082	0.999	GCA_003943125.1_01143
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	150234	151046	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	7286	8098	GCA_003943125_1_3_155	GCA_003943125_1_3_155	-	324150	.	PRK13745	anaerobic sulfatase-maturation protein. 	MDILGYAKKNFPIVELFTNAVLFSEKSIKKLSSLFGDLDFIQVSLDGLRTTYKKQRGSDDFQKVIENIKLIVKYNLNIRVNMTITHLNIEEMIDVYELVDSIGITSFSISPVYPLRRGKKLVSLVDYTQYLHKGKLIEKMHAKRKSQMNLTVIYPMEVLSEKATYTQESTYFQRFNTDLLHWTIDGRGDIFHFMDQFIYKELKVGNIYENTIEELEANDYTIQKNVLEHSNQGLKCMNCSLVESCPGFAYAKSYPEIAFSYKRCVFNEKQ*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0010	shell	direct	high	812	0.999	GCA_003943125.1_01144
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	151047	151310	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	8099	8362	GCA_003943125_1_3_156	GCA_003943125_1_3_156	-	324150	.	COG0535	Radical SAM superfamily enzyme, MoaA/NifB/PqqE/SkfB family [General function prediction only]. 	MDERLWLTNWNSLYIQNDIFFTDAIKPVYVGFKISENCNQRCSHCWAGKNLTINHSFDEIIAALNKIKILNPLHITITGGEPLVHEH*	mmseqs_cdd	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0011	shell	direct	high	263	0.996	GCA_003943125.1_01145
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	151381	151557	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	8433	8609	GCA_003943125_1_3_157	GCA_003943125_1_3_157	-	324150	.	.	hypothetical protein	MWEFILFKVDRSIIELSNKEYIVMKLDMKPNQKLDLSVKKVDLSVAVLTRDSSKAHGH*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0012	shell	direct	moderate	108	0.61	GCA_003943125.1_01146
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	151573	152427	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	8625	9479	GCA_003943125_1_3_158	GCA_003943125_1_3_158	-	324150	.	TIGR01716	transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis. [Regulatory functions, DNA interactions]	MTHFGKIFKKFRQSRGIKLKDVAKHGLSKSQLSRFERGETDLTITKFMRALQVINMPIDEFMYAVHDFRRDELNELLERIRVYITTRDILNLKKLLIEQQEKIPEHQIFHELNIILIKIKLQDISGEDSVSEQDIKYLIDYLFSVEFWGNYEILLFANTLDVFNHETFMVLSREMVRRSDFYKEIPNNRRIISTLLLNSYITCIERCELMDAVYFEKQLKACFFIETEIYERLVFQYAKELYKLKKTNDTRSIIEMKKYIAALKLAGSNGLAETFDIHLTKLLK*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0013	shell	direct	high	854	0.999	GCA_003943125.1_01147
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	153268	154086	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	10320	11138	GCA_003943125_1_3_159	GCA_003943125_1_3_159	+	324150	.	PF10112.9	5-bromo-4-chloroindolyl phosphate hydrolysis protein	MPRRNYNNVRSRRWIGILLILIAVGIIIQYLIPILLSIGIGYGIYYYATHKPKKITEPSASQQIEDLKKEIRAADSQIKQLDNYLKEKSYANYQQLADQLLPQLSYIQGRADTLKKYISPEIYQRIQRKVQNVTTDIHEQLHNLRAQTSESLKPNLEELAPELLETIHNIQIDHEAILKKISQSESNNKEELTAIHQSQMEHYEDILEGYLKIKTSPKDFYNAEERLSSAKAAIEQFDLDLDETLRQLNEADLRDFDISLRILSKKEPNTEL*	hhsuite_tools	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0014	persistent	direct	high	818	0.999	GCA_003943125.1_01148
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	154105	155376	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	11157	12428	GCA_003943125_1_3_160	GCA_003943125_1_3_160	+	324150	.	PFAM:PF05816.10	tellurite-resistance	MSQEFNFDIDKIANNAISKTDRTTEIIESTETQANGQMNFLEKLTPEQQDAIIAKAPQLVDNFISDQNTLLDFGQAAVEEVNNTVNRILAEQKKLQIPQVDELLKNTNKELNGFVAKYKDTQIAELDKKPNFLEKLFKQSKNTLQEFYFDSQNIEQKMDSMAATVVKQEDLLARNIVSAEMLIEDNTKSIENLVGVISFIEATQKEAGARASTLQNEVAQLDTATLDYQTKSQELARLTEVVNTLEQQHTEYISRLYVAWATTPQMRNLVKVSSDMRQKLGMLRRNTIPTMKLSIAQLGILQQSMKSGQVADAISNANNAALQMLAETSKEVIPQMERISQNPTIAVESVTKLAESLVAQNQGIISAIDKGREKRALLEATVIKSAETINDSVKLRDQKIIQALLDQGKEIQKEVDKPTTSET*	phrogs_hmm	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0015	persistent	direct	high	1271	0.999	GCA_003943125.1_01149
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	155495	156457	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	12547	13509	GCA_003943125_1_3_161	GCA_003943125_1_3_161	+	324150	.	PRK00114	Hsp33 family molecular chaperone HslO. 	MVRGRTTKSLSYEILIFVPLPFLFYVTIKGMDKIIKTLSENGAFRAYVLDSTETVRTAQEKHQPLASSTVALGRTLIASQILAANEKGDTKITVKVLGTSSLGAIITVADTKGTVKGYVQNSGVDIKKTATGEVLVGSFVGNGEFLVITDYGTGNPYHSMTPLVSGEIGEDLAFYLTESQQTPSAVGLNVLLDTNDKVKVAGGFLLQVLPGAKEEEITHFEKRIQEMPAISTLLESENHIEALLSAIYGNEPYKRLSEEELRFQCDCSKERFLNALSSLPKSDLEEMRDEDHGAEITCQFCQSTYHFDEKDLEELIRDKS*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0016	persistent	direct	high	962	0.999	GCA_003943125.1_01150
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	156444	157415	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	13496	14467	GCA_003943125_1_3_162	GCA_003943125_1_3_162	+	324150	.	TIGR00737	putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General]	MTNLNTPFLIGDVKIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNKKTLHMLHIDEEEHPVSIQLFGSDEDSLARAAEFIQENTQTDIVDINMGCPVNKIVKNEAGAKWLKDPEKIYSIINKVRSVLDIPLTVKMRTGWADASLAVENALAAEAAGVAALAMHGRTREQMYTGHADLETLHNVAQALTKIPFIANGDIRTVQDAQQRIEEVGADAVMIGRAAMGNPYLFHQINHYFETGEILPDLSFEDKMQVAYDHLKRLIDLKGEHIAVREFRGLAPHYLRGTAGAAKLRGAIAQANSLAEIEALLQV*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0017	persistent	direct	high	971	0.999	GCA_003943125.1_01151
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	157486	157926	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	14538	14978	GCA_003943125_1_3_163	GCA_003943125_1_3_163	-	324150	.	PRK03624	putative acetyltransferase; Provisional	MNIREMVEEDYDQVYQLWLSCAGIGLNHLDDSKEGIAQFLKRNPQTCLVAVENQIIIGAILVGFDGRRAYIYHTAVHPNYCRRGIARQLVETVLTVLDELKIHKVALVVFKRNTEGNHFWETLGFSTREDLIYRNQARTEMVRLDT*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0018	persistent	direct	high	440	0.998	GCA_003943125.1_01152
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	157973	160402	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	15025	17454	GCA_003943125_1_3_164	GCA_003943125_1_3_164	-	324150	.	PDB:4M4W_K	Replicative-helicase	MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKVYQQEGDFTIWPFSYRMKVLFLTAEQIAGAVHANNLGTEHILLAMLFDRGSLAARILEFIGFSYEDKEGVLRMTDLRKNLEHKASWNKEDLKAIRHLNKSAAATRQTMANMMGMPPATSGGLEDYTRDLTEMAHMGLLEPVIGRDKEISRILQILSRKTKNNPVLVGDAGVGKTALALGLAQRVADGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDSTLDAANILKPALAKGTLRTIGATTQEEYQKYIEKDAALSRRFAKVTIEEPTVADSIAILQGLKKSYEDHHKVVITDSAIEMAVKYAHRYLTSKHLPDSAIDLLDEAAARVQNKSPQNHVKAELSAADEALMAGDWNKVDTLLEKESQPIVYKLRVKDEDVLATLSSLSGIPVQKLTQTDAKKYLNLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFMFLGPTGVGKTELAKALAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGVRDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSEDMQEVVKIMVQPLISSLAEKGIKLKFQPSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLAGELKTGQSLKVGVKAGKLKFEVL*	rep_hall_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0019	persistent	direct	high	2429	1.0	GCA_003943125.1_01153
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	160406	160867	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	17458	17919	GCA_003943125_1_3_165	GCA_003943125_1_3_165	-	324150	.	COG4463	Transcriptional regulator CtsR [Transcription]. 	MSSKNTSDSIEEYIKTLLAQAGIAELKRSEIADFFQVVPSQINYVIKTRFTESRGYIVESKRGGGGYIRIGRIEFSNHHELLCDLLHSVGEQISHQVFTDIIQLLFDEQIMTEREGNLLLATTTDRVLGTNAAQIRARMLKKILQQVDRKGKN*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0020	persistent	direct	high	461	0.998	GCA_003943125.1_01154
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	161126	161476	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	18178	18528	GCA_003943125_1_3_166	GCA_003943125_1_3_166	+	324150	.	.	hypothetical protein	MKMDWFKYTRHVLVWWFSTLFFFTIISADYVDVQVATLVACLFAPFLFEPSSIKPKTKWVIDLVIIVISVFAVLFTQTYRIAFTYSEITYLLISLIILILIDLVISHKGFTKRIVK*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0021	persistent	direct	high	350	0.997	GCA_003943125.1_01155
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	161553	162596	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	18605	19648	GCA_003943125_1_3_167	GCA_003943125_1_3_167	-	324150	.	COG0264	Translation elongation factor EF-Ts [Translation, ribosomal structure and biogenesis]. 	MAEITAKLVKELREKSGAGVMDAKKALVEVDGDIEKAIELLREKGMAKAAKKADRVAAEGLTGVYVSGNIAAIVEVNSETDFVAKNAQFVELVNETAKVIAEGKPANNEEALALIMPSGETLEAAYVSATATIGEKISFRRFAVVEKADDQVFGAYQHNGGRIGVITVLSGSDEDLAKHVAMHVAAMKPSVLSYKELGEEFIHDELAQMNHKIDQDNESRAMVGKPALPHYKFGSKLQLTDEVIAQAEEDIKAGLAAEGKPEKIWDKIIPGKMDRFMLDNTKVDQQYTLLAQVYIMDDSKTVEAFLESQGVTIAGFTRFEVGDGIEKAANDFESEVAATMAAALGQN*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0022	persistent	direct	high	1043	0.999	GCA_003943125.1_01156
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	162679	163461	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	19731	20513	GCA_003943125_1_3_168	GCA_003943125_1_3_168	-	324150	.	PRK05299	30S ribosomal protein S2; Provisional	MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKFADQAYDFMRDAAANDAVILFVGTKKQAADAVKDEAERAGQYYINHRWLGGTLTNWETIQKRVARLKEIKRMEEDGIFDVLPKKEVALLNKQRARLEKFLGGIEEMPRIPDVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMADAIIEGRQGEDNVESVEAELAATDTQADSIEEIVEVVEGTNE*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0023	persistent	direct	high	782	0.999	GCA_003943125.1_01157
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	164029	164544	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	21081	21596	GCA_003943125_1_3_169	GCA_003943125_1_3_169	-	324150	.	cd17493	type III toxin-antitoxin system toxin TenpN and similar proteins. TenpN-like toxin component of a type III toxin-antitoxin (TA) system, which consists of a ribonuclease (RNase) toxin that processes its structured and specific cognate RNA antitoxin, which in turn then directly inhibits the toxin. TA systems have been associated with many important phenotypes, like phage resistance, maintenance of genomic islands, and formation of bacterial persister cells.	MKSKRLRLTQIDLQMCCDFNLKQAMDYDFKSKKIYSKGRGFAIVLVNIKGLTFAIPLRSYMPKRYQLKYKLRDSKKIGFVEGLDLGKSLIIEDVKYILNTNFRLRQIADYHKIVDNDRAIINKLIKAITDYNKAVSDNDLNKLNDPKRFKFSTFQNYTDRLKSITEDDYID*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0024	cloud	direct	high	515	0.998	GCA_003943125.1_01159
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	164892	165707	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	21944	22759	GCA_003943125_1_3_170	GCA_003943125_1_3_170	-	324150	.	PDB:5T1Q_D	Adenosylhomocysteinase	MSRIESSIAEMRRLQAIPVHYDMGDRYGNDADGDGRIEYDCSSSVSQALGLSLNNNTETLKSNLPTIGYHQVYDGVDGSIDFERGDVVIWGPRDGSSSLGAFGHVMIMTSPTTMIHCNYGYDGIAETDYNQIWEINERPRETVFRENGQAAAPQPAPMANKSQNLKIYRVDDLQLVNDIWQVRCNDLVPVDFDWTDNGIACEDIDLVDENGNLLADQETKIGSLFVINPNKVVSDGESAYGSGNYYWRNIELAASGRVWLSVWDINHLLYG*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0025	cloud	direct	high	815	0.999	GCA_003943125.1_01160
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	165710	166030	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	22762	23082	GCA_003943125_1_3_171	GCA_003943125_1_3_171	-	324150	.	PFAM:PF04531.12	Phage_holin_1	MSKINWKVRFNAKNKAFIARVFVAVLVPIFVYYGLEVKDLTSWDAVFNLVVKAISNPFVIGTAVVNFINILPDPTTAGFSDSDRALGYEEPHGENTEKQTETDKGE*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0026	cloud	direct	high	320	0.997	GCA_003943125.1_01161
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	166032	166316	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	23084	23368	GCA_003943125_1_3_172	GCA_003943125_1_3_172	-	324150	.	PFAM:PF04531.12	holin	MFVVRNDFVYQVIIFAIPLIGLYWSQKDRAAKHERRITVLEKDIENLREFKKTASRRLDSHEEQNKAILVLAEQVKGLSEDIRELKKIINKKEN*	phrogs_hmm	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0027	cloud	direct	high	284	0.996	GCA_003943125.1_01162
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	166334	166882	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	23386	23934	GCA_003943125_1_3_173	GCA_003943125_1_3_173	-	324150	.	PF07104.11	Protein of unknown function (DUF1366)	MKFRVANKYLREANKTFVAIRCDEPYTAYDRVLEGDHMNDNDESLIDAVLKLVATELDPTGVIAEMQQKLDKTSDATNKNKDSVERTSKLTDVLILLAISIEGGMQQDLYKKVASLLPTLTDGVRYSFGDIVSAPYPYDTNPKYPQGTPVILKFLDNWTHKSQPLQELLQKGACTTIMPKLN*	hhsuite_tools	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0028	shell	direct	high	548	0.998	GCA_003943125.1_01163
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	166872	167099	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	23924	24151	GCA_003943125_1_3_174	GCA_003943125_1_3_174	-	324150	.	.	hypothetical protein	MNENLYTYMFTDLKNQIGDKTLEVAEFKARFIQEQTEKEQLQQQINHFNAVLASDEALRELFDEAKMKLEGTNEI*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0029	cloud	direct	high	227	0.996	GCA_003943125.1_01164
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	167109	170852	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	24161	27904	GCA_003943125_1_3_175	GCA_003943125_1_3_175	-	324150	.	PDB:3GS9_A	tail-protein	MLFLLDRGVKTVKWNGIPLHEANSAIVKEEQNGDFTLNVRYPITDSGIYQLIKEDMLIKAPAPVLGPQLFRIKKPIENNDHLEIQAYHITDDVMKRSVKPLKVVNLSCAMALSQMVQNAKADIQDFSFTSDIWDKRTFNTTEDDTLYSILLDGKHSIVGTWEGELVRDNFALTVKKNRGTNRGVIITTHKNLKSYQRTKDSQNVVTRIYAKSTFKAEGAEQETTLKVTVDSPLINSYPYVNEKEYENNNAKTVDELRQWAEAKFKNEGIDKSSDAIKIEAYELDGQVVHMGDTVNIKSRKHNVDLYKKAVAYEFDCLANNGKGAYISITFDDKLGIGGSKMSNGLSAVANEILEIGNSAQEIATERALRNADKAFEAEFEKQKSLINDGIEQAKAKAEEVKSEINQSIEQKLQQTKSEVVEKVKQDFNQGLANANSEIGKVKQDLTNLQSSSETTITQLKSDLTSQLGDKASKSEVKQTADGIREEISHLSTASRNYILNSDMTTSIDRTTGTGLPLSSDLIRTLNAERSFTLSVDVIAQNMVAKNDKKRFGISYELKFSDGSNLWTEVFQTSDTALARISKNFVLPAGKQIVSIAGGLYFQAAGQIKLSRPKWGIGHNNKEWIKAVEDTDEQITAARTTFEKTAEGLKTDMAAVKSYVADDGKRREQLEQYTRTETARSAEALRKQASESYVAKSQYSEDAKGVARRFEELNLNGTNLLPNTDFKNLIDVGNQFTVGGKTYKVKTLDKWYSSYNDGIPNPKTNYHGYFNETKFTETVFEFNESNGVREWKGLPIFITNDSRYTVGKYIFSADVNATGEGTHLEVGFYYYNKTGMREFHAGRARKNITSVNSWSRISLELKINDDVDFAKEMGFYIYGYGFTSNSALYFKRPKLTNTNWTPSVEDNKKYTETKIAEYKQTVDGEFKKIQSSVGEMVKKTDINITPGQISFGTGKVVNGKTIASFFVQNPESIEAITKLMRITGDLVVNGSITGQNLASKTITTANLAAGSVTTEVLAADAVTAKNMRVDYALINKLTADDVLLNNLVAKQAFINKLSTIDFSATQIKGGILKSLNGNTSFDLSSGTLEFYTDDPAIRRVTGGFPNQFVKFATGVSGGRDVGVTVIGSNRWGSENSNDGGFVGVRAWNGNGVDLIDVVGDTVRLASSAYESADGWDVITLPDRLEIDAHNANHRASSRVKVGDVWLWQDISTYSSLRDTINLIIDNLRLLHNNKTTETGYSYTLPAKV*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0030	cloud	direct	high	3743	1.0	GCA_003943125.1_01165
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	170853	171578	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	27905	28630	GCA_003943125_1_3_176	GCA_003943125_1_3_176	-	324150	.	PDB:2X8K_A	Distal-Tail-Protein	MIKHNELVIDGVHTSSFPYKIIILESPKIQVGESKTKLLGHDGISGYIMQSNEHREPIEKTYTIQMVNPTEQQILDFCALLAKRNFWLENEQNKLIRWWCYQVKVSDTEKDKFGVYSLEARFICHPTKYMKKVDNQILSKNSVLVMKGSALAFPKIIITGQSASETTFTIGSQVIRLEKLSESAYMTNNPANPSFLDEQGKPIKWSGDFISLNANQTDKNVGVVLGPGIQSIEFETNWGWI*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0031	cloud	direct	high	725	0.999	GCA_003943125.1_01166
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	171575	174664	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	28627	31716	GCA_003943125_1_3_177	GCA_003943125_1_3_177	-	324150	.	UniProtKB:R4KJ43_9FIRM	Minor-tail-protein	MAGKNIKGITIEIEGNTQPLQKALKGVDSAASKTTKEIREIDKSLKFDTGNITLLTQKQELLGKQVQTTKEKLEVLKGAQQQVEAQFKSGEIGAEQYRAFQREVVQTENVLKGYESKLEGVNKALESNGNSTKSNKDQLKELQNEQKQLASESEKVVSSFKLQESQMGSNASEADKLALAEQKIGKQSEIVERQIANLEKQLELAKQEYGENSVEVNKLETQLNESKSAFNRLANEMENLGDAGKKANDGLSETNNLLKAELLNQFSEKLADISQKLVDFGKKALEAFREIDEGMDTIVTKTGAGGKALEEMQEVAKGIATEMPTNFSNIGKAVGEVNTQFQLTGDALKTTSKDIIKFAEINGSDVTNATIQSKQALEAYGLSVEHLSDVLDSTTYVAQGTGVSVDDLMKKAIDGAPQIKMLGLSFDEAVTLIGQMEQHGVDSSAALSGLTKAASAYTKQGKSMKEGLKETIDAIKNSKNETEAMSLAMEIFGAKKAPQMVDAIKRGTLSFKDLGYTAQVSAGLVSETYKNTLDPIDKFTTAQNGLKIVMGEVGGAIAETFAPVLEVLVGIFKQVAEWIKSLPGPIKQFVVILGTVVTVAGVLAPIFLTLQAAAVALGTSIGGMIAAALPIIGIAAAIAAGIAAVVIVIKYLWETNESFRQAVETIWNTIMSVINTVIQAISDFVMSIWGTLVSWWNENQELIKATAEKIWNGIQQVIQVVMDIIGPFIQASWENISTVISTTWEVIKTVIETAINVVLGIIKTVMQIINGDWSGAWETIKSVGETIWNGIKSVAESIFNALAQILSNIWNAISSTASNIWNGISSSLNGIWNSLLSTVSNVFNSISSAISNVFNTISNSASNVWNGIKDTIGGAINTAKNLVGDAINAIKGFFNFQISWPHIPLPHFRVSGSANPLDWLKGNLPSIGIDWYAKGGILTKPTIFGANGSNLMVGGEAGNEAVLPLNERNLSAIGRGIAETMQGQAPIININISDNVIREEADINKIASAVADKIAYELRRKRELQGGTT*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0032	cloud	direct	high	3089	1.0	GCA_003943125.1_01167
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	174873	175292	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	31925	32344	GCA_003943125_1_3_178	GCA_003943125_1_3_178	-	324150	.	PFAM:PF12363.7	Tail-assembly-chaperone	MQRIVAINGVEYRLANNAYTPIAYKAEFGKDYFKDLLGMFKNNEALQKILTMSEKEEFKTEDMDIAMLADFDMTFFQRLFYIFAKSANPTIKTFVEFYMEMEVFPFDVVGQTLMEMLSEGMQTKKKSMKAQMQAMSPLQ*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0033	cloud	direct	high	419	0.998	GCA_003943125.1_01168
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	175304	175882	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	32356	32934	GCA_003943125_1_3_179	GCA_003943125_1_3_179	-	324150	.	PFAM:PF04630.11	tail-tube-protein	MTTEKNKVTFGLENVHWVEIESESEEGVLTYGNTVHPQRGAVELTLDPSGDTNIFKADNVNYHTSESNDGYTGKLKIAKLTDLFCQNILGEVLDPTSKVMTEVANAKKKRFALMFQIEGDSKGTRHVLYNCSAQRPSGGSATKDGGNVNTTELNFNASPRPLDKVVKRRTTEETPEDTYKKWFDKPFEPNQV*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0034	cloud	direct	high	578	0.998	GCA_003943125.1_01169
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	175895	176218	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	32947	33270	GCA_003943125_1_3_180	GCA_003943125_1_3_180	-	324150	.	PFAM:PF05657.10	tail-completion-protein	MKLVEFAELLTETGLIIQYHSFKKGQAPNPPYVVYTAGRPVVQLGDNQQEFKVDTVIVELVTDKKELALEEKLENLLNQSKFFFEKEDETYIDSEELFVVTYSVYLY*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0035	cloud	direct	high	323	0.997	GCA_003943125.1_01170
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	176215	176565	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	33267	33617	GCA_003943125_1_3_181	GCA_003943125_1_3_181	-	324150	.	PFAM:PF04883.11	putative-tail-component	MDLSNEIAKYLSEYSEEIENELDELAEETANKAVLTLKVNSPRRKGKYAAHWKVTRNKKGNYVVHNAPKTYRLTHLLERSHLLRNGGRSKAQPHIAQVEQQVIEEITKGVERIVRG*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0036	cloud	direct	high	350	0.997	GCA_003943125.1_01171
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	176565	176867	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	33617	33919	GCA_003943125_1_3_182	GCA_003943125_1_3_182	-	324150	.	PFAM:PF10665.8	Minor-capsid-protein	MWNDEITLIKRIENGYDELKQPVFDERETKILCKVRSTTRAEFYQAQAAQADFRPSKVVTVHTYEYQNEEFAIFLGKRYKVKRTYEVDVNEMELTLEEVL*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0037	cloud	direct	high	302	0.997	GCA_003943125.1_01172
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	176867	177136	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	33919	34188	GCA_003943125_1_3_183	GCA_003943125_1_3_183	-	324150	.	CDD:cd08054	Head-Tail-Connector-Protein	MMKEEVILELLKLQLGISTSIRDKILKSKIKSSISELKNVQGLKLNPERSDHVDFVVDYAAYRYKSGDVENMPRHLQWRLHNLIMGGAQ*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0038	cloud	direct	high	269	0.996	GCA_003943125.1_01173
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	177133	177438	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	34185	34490	GCA_003943125_1_3_184	GCA_003943125_1_3_184	-	324150	.	PFAM:PF08198.10	Arc-like-repressor	MTYKVIRAFADTTDKEPEHQNGYPYEVGETYPRDGFKPKKSFVQSLCNGTNTTGSIFLVFKEEPTVPEKDNTPEVDVENAHLENDLPAETDEQPKKQQEAE*	phrogs_hmm	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0039	cloud	direct	high	305	0.997	GCA_003943125.1_01174
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	177452	178624	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	34504	35676	GCA_003943125_1_3_185	GCA_003943125_1_3_185	-	324150	.	PFAM:PF06673.10	Major-Capsid-protein	MNRQIILGAKVKMRQESLVKLLAEIDDMEERSAVILREAEEAQTEEEVDKADEDLSALEKELDEKKAEKEKLEQEIKELEDEIEKLNQKAPQPAAEAGERAQGGKMEIREALNQYIRSQGATRDGGLKTVDGGALIPTELLAPQKVPTTNDHLVDLVNVVKVNSGSGKYPVIGKSGKKMSSVEELEKNPELAKPDINDVDYSIKTYRGYIPVSQELIDDADYDIMGLVGEEITDQDMNTKDVEIAKILKTATAKAAQGLDGLKDVINSIKSVYDVHLVVTDSLFAALDKVKDKNGRYMLQPDVTSPTGYKFAGRVIHKFEDKVMGENEGDMKAFIGDVKAFATLFDRVQASIKWTDNNIYGQLMASFVRFDTKKTDGKAGYYVTYTDAPA*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0040	cloud	direct	high	1172	0.999	GCA_003943125.1_01175
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	178617	179186	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	35669	36238	GCA_003943125_1_3_186	GCA_003943125_1_3_186	-	324150	.	PFAM:PF04586.16	prohead-serine-protease	MMKRESYRTATFETRENEEKKELIISGYFIKFEEETEIFPGYREIIDKHSLDRALDGADIRALFNHDTSLVLGRTGNHTLTLEVDEIGLRGDITINPDDPQAMGAYARVKRGDVVGCSFGFMPKEIDSTQTEDGFLDRIMDMELFEVSPCTFPAYPQTEIAARANDLEKAKANMLERKKQKLKEKYSHE*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0041	cloud	direct	high	569	0.998	GCA_003943125.1_01176
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	179173	180363	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	36225	37415	GCA_003943125_1_3_187	GCA_003943125_1_3_187	-	324150	.	PFAM:PF04860.11	Portal-protein	MGIFERFRKRNKNPTIQFLSHQDFGLMVSDSYTTLGRNPDVLIAVNKIADLVSNMTIYLMENTDKGDKRVLNELSRKIDIGPCHNMTRKSWVYKIVRDLLLFGDGNSVVHVQYHDGFIRNLLPFPMSQVSYKMDNSNGYKIVYNNQEYGPDEVIHFVMNPDPDSYFQGTGYRVALRDIVSNLNQATKTKNDFMRNKMLPSMIIKVDAFSETLSTEEGRNNLLKKYFESSKAGQPWLVSEDMFDIQQVKPLTLNDIAINDSVELDKKTVAGLIGVPAFLLGVGTFNKEEYNNFINGTIKDIALIISQTLTRDLLYSPNMYFKLNARSLYSYNLTELVTAGTSLVDRNAMRRNELRGWLDLAPDDEMEDLLVLENYLPADRLGDQKKLKGGETDNDET*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0042	cloud	direct	high	1190	0.999	GCA_003943125.1_01177
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	180384	182090	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	37436	39142	GCA_003943125_1_3_188	GCA_003943125_1_3_188	-	324150	.	PFAM:PF03354.14	Large-Terminase	MVTNLERAKIYATNVISGEIVACEETRLACQRFITDLENPDYYIDTDIVDFVVEFIQTCIVHQQGDDKFGASIREKPLILQDWQHFIVVNLFGFYHVGTGVRRFKEALIMLARKNGKTAFTAALTITMSLMDRMSGSKAYVVANSIKQALEAFGFMKFNMERWQDKNIRFKDNNAEHSITGNFGSEGAFYINALANDESRLDSLNGNVIIIDEAHTMRNSKKYGLMKKTMSAYTNKLLFIISTAGDIPNGFLANRVKYCQKVLKGTVKDEALFMFICKADQNSEGEVVDYTSDEVLMQANPSVGVTVSLEDLREEALQAMNDPQTRNEFLNKTLNIFTNSMNAYFNVDEFIASDEDYDWSLEELSQLPIKWFGGADLSKLHDLTAASLYGFYKTNDGKVIDITISHAFFPIVNAHKKANEDSIPLFGWKDDGWLTMSNTPTVLYDDVVNWFLKMRRMGFSIPKVGFDRKFGREFYLKMRKAGIKVVDMPQYFWRKSEGFRRIEMKAKNKEFYYCHNEAFEYCVGNVRAIEKTDDMIQYEKLDGDGGHQRIDLFDATVFAACMALEELR*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0043	cloud	direct	high	1706	0.999	GCA_003943125.1_01178
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	182093	182473	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	39145	39525	GCA_003943125_1_3_189	GCA_003943125_1_3_189	-	324150	.	PFAM:PF05119.11	Small-Terminase	MARPITKKSIASKVKKVMKELGTYRKEFEQIIEIYAGMLYQYQEYEKQHEELGYRVTEPYVNKAGAENERKLPIITVMETLRKDILSYSNQLMLNPKALGDEIQKENTESPLLKVFAKQPKPKGRA*	hallmark_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0044	cloud	direct	high	380	0.997	GCA_003943125.1_01179
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	182653	183015	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	39705	40067	GCA_003943125_1_3_190	GCA_003943125_1_3_190	-	324150	.	PFAM:PF14239.5	HNH-endonuclease	MTDSRVKIGIFLYMVYKEVRKNLRTKKWIKFRDRIMREHDYLCQENLRYGRRVQAEMVHHIYPVSEYPELEFVRWNCLPLLNKVHNTFHDRINDKIVGQGLYWQKKRKKEFLDFYKNLKK*	phrogs_hmm	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0045	cloud	direct	high	362	0.997	GCA_003943125.1_01180
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	183145	183687	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	40197	40739	GCA_003943125_1_3_191	GCA_003943125_1_3_191	-	324150	.	CDD:cd01192	site-specific-tyrosine-recombinase	MNLVEPIRDKDDIQAMKDYLMEWNERNYMLFLVGINSGFRISDIVMLKVKDVQGWHIRVKEKKTGKIIKRKMPRPLKNALRKYVEGKPLHHYLFQSRKGKNQPLTRQGAYAIIKTAAEDLGIDNVGTHTMRKTFGYHYYKKYKDVATLMEMFNHASPAITLRYIGIRQEQLDLTMANFSL*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0046	cloud	direct	high	542	0.998	GCA_003943125.1_01181
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	183813	184277	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	40865	41329	GCA_003943125_1_3_192	GCA_003943125_1_3_192	-	324150	.	PFAM:PF05263.10	transcriptional-regulator	MTKKTAIRTRRDFLEFELEDKYLKIDKLIGQRRHELERQYEVNNLIMPNMNDIGGSRSGTSINSSENAVINFASDRMILKLEEFQSAIDELLKKLEPDDKKIFHLRWGEHTKYDWIQIWHIMQSGETGYLYKHSKQIYRRREIILDNLAKLLLM*	phrogs_hmm	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0047	cloud	direct	high	464	0.998	GCA_003943125.1_01182
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	184243	184488	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	41295	41540	GCA_003943125_1_3_193	GCA_003943125_1_3_193	-	324150	.	.	hypothetical protein	MNKRIKKKKAKQAELLRLKQIEEAIAYFKENPIDIHKIIRDISNALHKAFTEIAAAFSTLDKQFENRRLESDKENSNKDKT*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0048	cloud	direct	high	245	0.996	GCA_003943125.1_01183
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	184503	185402	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	41555	42454	GCA_003943125_1_3_194	GCA_003943125_1_3_194	-	324150	.	PFAM:PF09681.9	replisome-organiser	MSEIKWIKITTDIFDDEKIRLIDALPEHDAILVIWFKILTLAGRQGGNGLLMMNNKVHYTDEMLAAIFNRPITTIRLALQTFEQFGMIEIINGIISLPNWEKHQNVDGMEKAKEQTRKRVARYREKQKQLLENGNVTCNVTVTPCNATDIDIEIDREKDKDNIVVIDKQNFIQEIEANLGRGLVKFEFDMINDYLLNQKVSTELFLEAVKIAVANNVRKFNYIARILDNWINQGIRTPEQAYQAQRDFQAKKNNKVMVKNQKAGNNPDWSNPDYKNETSPEKQAELEKQKQELLKKLEE*	rep_hall_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0049	cloud	direct	high	899	0.999	GCA_003943125.1_01184
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	185475	186224	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	42527	43276	GCA_003943125_1_3_195	GCA_003943125_1_3_195	-	324150	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MKCELFHDNFQNYKRYGIPKAQLVIADIPYNLGENAYASSPEWYVDGDNKNGESDKAKSTFFNTDVNFNIAEFMHFCSKMLIKEPKEKGKAPCMIVFCAHQQQQMVIDLAKRYGFQKYIPIVFIKKSSPQVLKANMKIVGAVEYALVLYRDKLPKFNNDGQMVLNHFPWIVDQSYPKIHKTQKPVPVLKRLIEIYTDKGDVVIDPCAGSGATLRAALELERQAYGFEIDRFFYKDAKEKMLTSFQASLF*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0050	cloud	direct	high	749	0.999	GCA_003943125.1_01185
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	186221	186487	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	43273	43539	GCA_003943125_1_3_196	GCA_003943125_1_3_196	-	324150	.	.	hypothetical protein	MYYTKTSNGIEVAKRDIIDDLKDVINRYEFYQDEVRRCYHDMEEYEAKIDLLETQKMDLVEALANKTWQDIRHTAFRRRQARKWRAKA*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0051	cloud	direct	high	266	0.996	GCA_003943125.1_01186
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	186498	186848	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	43550	43900	GCA_003943125_1_3_197	GCA_003943125_1_3_197	-	324150	.	.	hypothetical protein	MKFLDLFAGIQTSWQLSRSQCGCGDSKGIEMKLKINRRDSFQKDYEYCYVIFCTCDGADCSIQIFDNFIQIDDFEEFSYWFEQQIYYLTDEQFEKINGIWLRMMVKHYYRRDELAF*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0052	cloud	direct	high	350	0.997	GCA_003943125.1_01187
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	186863	187228	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	43915	44280	GCA_003943125_1_3_198	GCA_003943125_1_3_198	-	324150	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVVLVGRTTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGTLIGINGRIQTRTYENQQGQHVYVMEVVADNFQILQNRNKAANADSLYGEEPT*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0053	persistent	direct	high	365	0.997	GCA_003943125.1_01188
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	187320	187568	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	44372	44620	GCA_003943125_1_3_199	GCA_003943125_1_3_199	-	324150	.	.	hypothetical protein	MIEIIDRKPFRINFKNKDQTIYAVRDGILCVFFRNDWGWLNVPDEMYNKRWYYIKNKGITYISDEELQILSQEFTNGEELLL*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0054	cloud	direct	high	248	0.996	GCA_003943125.1_01189
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	187582	187818	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	44634	44870	GCA_003943125_1_3_200	GCA_003943125_1_3_200	-	324150	.	.	hypothetical protein	MSEILGAIAMLAFVFITGAFINHLGWRKAKKQAEREARENERIELEAMYVVCAIEHDRRERMRKLAEARKHSTKSFLY*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0055	shell	direct	moderate	210	0.886	GCA_003943125.1_01190
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	187818	188084	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	44870	45136	GCA_003943125_1_3_201	GCA_003943125_1_3_201	-	324150	.	.	hypothetical protein	MSEIIDRKPFRINFKSEDQTIFAVIDGILCIFFRNNWGWLNVPDEVYNKYWSYIKNKGITYIPDEELQRLSQKFTNGVELINIRESEK*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0056	cloud	direct	high	266	0.996	GCA_003943125.1_01191
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	188087	188395	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	45139	45447	GCA_003943125_1_3_202	GCA_003943125_1_3_202	-	324150	.	.	hypothetical protein	MTLKDRVENLEALHTVQKRGLANTQLWLVFVSFIMFLLAIGMIAGYGKQQTQIKDLQAELERVTNEQKDVNQRQDVMINKFNQMYYEYQHKKITGKDNFPGG*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0057	shell	direct	high	308	0.997	GCA_003943125.1_01192
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	188392	188943	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	45444	45995	GCA_003943125_1_3_203	GCA_003943125_1_3_203	-	324150	.	PFAM:PF05315.10	endonuclease-VII	MIPKFRAWENSAKQTFSGSTEVYRHLPKGMLTNLYHKMAARNKKNSFGNLPFSLNQFRKWAYSQEKFFYLFDVWVQSGYKKDFKPSVDRTNPYLGYSFDNMTWMFWEDNKIKSYKEVGSKKRKVIVMLKDGIKIGIFKSVKDAQFFLGMKSNGNISECLAGRRNNVFGYQFVYENPELMEGNA*	phrogs_hmm	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0058	cloud	direct	high	551	0.998	GCA_003943125.1_01193
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	188927	189292	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	45979	46344	GCA_003943125_1_3_204	GCA_003943125_1_3_204	-	324150	.	PDB:1E7L_A	Recombinase	MKRKSISKKTRELILSKYNSHCAYCGKKLDLTTLRVDHLHPHYLGGEDSFDNYMPACRQCNFYKSTLSLEKFREQMKSIHERVAKPFIARLAIDYGIVEIKPFDGKFYFEFEKEVQDDTKI*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0059	cloud	direct	high	365	0.997	GCA_003943125.1_01194
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	189292	189807	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	46344	46859	GCA_003943125_1_3_205	GCA_003943125_1_3_205	-	324150	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MDRQDLKEGQEVYVKGRVIHTGDHLDIVLDKGSFIENAIILHHKKPVIPQFVADWIEVCKDNLTHSLYTAMTPNFMKENGQSFDLILWIKKASNQETFARAWLDGYEVEKEKRYKVKLKNTDDYLVKTNNDDYHFYNNIYIKNRKHTRKELEDAGFGWCFSCEGIEVQEVE*	mmseqs_cdd	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0060	cloud	direct	high	515	0.998	GCA_003943125.1_01195
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	189809	190033	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	46861	47085	GCA_003943125_1_3_206	GCA_003943125_1_3_206	-	324150	.	.	hypothetical protein	MQNHTQIALIKRWERDHYRLGNEYKNKLAKKPVEVVELELAELTKQWDSVSFSVVPKGAMKIEGNKTTIFKKRG*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0061	shell	direct	high	224	0.996	GCA_003943125.1_01196
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	190037	190321	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	47089	47373	GCA_003943125_1_3_207	GCA_003943125_1_3_207	-	324150	.	PFAM:PF09035.9	Excisionase	MNDLMNQMLDQFEAGLMDRALKVMHVVMDEKRRYPMELNKSQCSEMLLGTKDTGTFDARFNCHKDFPRIEGKRDKFPRDEVIDWYHRNWMKTGG*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0062	shell	direct	high	284	0.996	GCA_003943125.1_01197
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	190343	190705	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	47395	47757	GCA_003943125_1_3_208	GCA_003943125_1_3_208	-	324150	.	.	hypothetical protein	MAVSRDMTEIEIKVLNGIKNGASFDLPIQANELRISLGLSKRMLEEVIESLRVNFRQPIIAKRTQPSGYYLPRNEEERQAGLAPYKRQIETEQKNLAAVMAVNLDEFWQRKKPDGNQAQK*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0063	shell	direct	high	362	0.997	GCA_003943125.1_01198
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	190714	190911	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	47766	47963	GCA_003943125_1_3_209	GCA_003943125_1_3_209	-	324150	.	.	hypothetical protein	MNNVAVNVVRIEPDAYDAAVKFANANDLKISKVISMFVRYGVENVELKEVDVRTEKFCIGDQVIN*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0064	cloud	direct	high	197	0.995	GCA_003943125.1_01199
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	191058	191276	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	48110	48328	GCA_003943125_1_3_210	GCA_003943125_1_3_210	-	324150	.	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain  [Transcription]. 	MQIKLYELRKKAGLNQADLAKKIGISVNQYGKKERGQQEFTQDEMFLLSNFFNKSISDIFSPRKSPKREHKI*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0065	cloud	direct	high	218	0.995	GCA_003943125.1_01200
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	191333	191758	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	48385	48810	GCA_003943125_1_3_211	GCA_003943125_1_3_211	+	324150	.	.	hypothetical protein	MNWIQWLEFINNITAPFGFLLTIFTFLLARATRKKLEKTEEITLFNAERAQYLSKLDGIKTVIDESENRKDIIPEKIITNTLKLISELENNYPCLFKHDKITAVALKDIKALKDKTKIPLVEFLDPFNRLYSMFTNRKEIK*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0066	cloud	direct	high	425	0.998	GCA_003943125.1_01201
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	191758	192072	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	48810	49124	GCA_003943125_1_3_212	GCA_003943125_1_3_212	+	324150	.	.	hypothetical protein	MDNIIINKLSTLTLNHQIKWNTIDHLTVRGMPYSQQFQHILPDKSFFTKYEGKTFVVLYGEIRDFFRNRTIENYFLQEIQGETIEDVNVPEEDIIKLHTIISLV*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0067	cloud	direct	high	314	0.997	GCA_003943125.1_01202
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	192076	192210	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	49128	49262	GCA_003943125_1_3_213	GCA_003943125_1_3_213	-	324150	.	.	hypothetical protein	MLIKIVSLLLSVTAIVMSLFHIHELYHEYKRLSKRVKYWNKRHR*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0068	cloud	direct	high	134	0.993	GCA_003943125.1_01203
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	192391	192504	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	49443	49556	GCA_003943125_1_3_214	GCA_003943125_1_3_214	-	324150	.	.	hypothetical protein	MLRRRRKQKDPWLTQPRATVIAAIIALIAVILQLLFK*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0069	.	unmatched_CDS	none	0	0	.
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	192673	193413	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	49725	50465	GCA_003943125_1_3_215	GCA_003943125_1_3_215	+	324150	.	PDB:2FJR_A	Repressor-protein-CI	MELNIYIGQKIKEFRTKEKMTQSDLAKVLDTTKQTISRYEKGDRKAGQDTLFTLCDIFNVSIDDFFPPIQSPDTSNELVQAINDTVVQLTPPNQKIVLRTSEDLLEGQKTKGEKITEISEPLTEYHVFEKLAAGNGYNYMEDRNYDVVFFNKDIDHDFASWVYGDSMEPKYLDGSVALIKDTGWDYDGAIYAVDWDGQSYIKKVYKEKDGLRLVSINDKYDDKFAKWEEEPRIIGKVVGNFMPMER*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0070	cloud	direct	high	740	0.999	GCA_003943125.1_01204
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	193559	194800	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	50611	51852	GCA_003943125_1_3_216	GCA_003943125_1_3_216	+	324150	.	COG3177	Fic family protein  [Transcription]. 	MEYRSLKKIYYSDRNTYEIEYLQRLNGYGTTKTAMFPYLMKKNTFSTSQYPLFVVPLLDIQFLSQKIIELSVEITKLANALPDVAHQQFYNEQLFNAIISTNEIEGIGTTRKDVAAAIEALNKNKKGVLKHRSTVRMYLDILSEDYLHITELSHIREIYDGLTNGEIDTEDQLDGELFRKDSVSIVNNKTGKIEHIAPHSESKIKDMLLSWIDFINSPSIPFLIKASLAHYFFENIHPFYDGNGRTGRYILSKYLSRRLDKFSGLIISKKINEDKDKYYKAFSETGDSLNRADGTQFVHTILSFIIKGQSEIIETLSDKQDMLYYYHDKLKNSDFTEVERTILFLLVQSQLFVSDFEASITDNELLELLSHTEYSQRSIKQTIKNLEKKAVLIKVAKRPLKHSIVEEFFDYEK*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0071	cloud	direct	high	1241	0.999	GCA_003943125.1_01205
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	195131	196201	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	52183	53253	GCA_003943125_1_3_217	GCA_003943125_1_3_217	+	324150	.	PDB:1Z19_B	Integrase	MASIRKRGKYFEYRVVYHDSLGERHEASCGGFKTKAQARAAGQKREVELRNSPMSNNEVTMLDYYKAWAQLYKKPYIKKKTWNSYKQTKNHIIKYFGQIKLKDMTPVRYQEFLNEFGAKYAQDTIERTHYHIKSAVKIAVRDQLIPSNFTEGAVVKSQKEKKPETESYLEEDEYFYVISKTQENPQYISHMTLYILAISGMRFAEAMGLTWDDIDFKNQVFRVENTWDYSDTEDFSETKNEQSIREIPFNDNVAKVLKNYKENYWRENKQGRVLFGASNRATNTALKRMVKREVHPHTLRHTYASYLIFKEVPVASISKLLGHKSILITLKVYAHQFEKMKEKHHSEVRNILSEIH*	common_virus_hmm	common_virus	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0072	shell	direct	high	1070	0.999	GCA_003943125.1_01206
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	196548	197333	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	53600	54385	GCA_003943125_1_3_218	GCA_003943125_1_3_218	-	324150	.	.	hypothetical protein	MKTIFENQEVKLNRKNGSTVIVRNDGFSYLDAKSEKKNLNISFDKVSTILSLRYCNSNSSYNLIFRDQNGKNMAEFDTDTTIYNNDHNILETKAILLAFAASKLTKDFPNNLRDLDIILAFSMKEKEIRIASGIIYGSKHKISIEDIRRVQCVTNGTISNLALYKSDKKTFWDIPDMKIPCNEITLPLFEAIVIKNTGKGIDFSRGNCFDQKTSEFMIIRYMDANFFVNSDGALDKEWQKQIYDRMSAYKYDLATLLEGVL*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0073	persistent	direct	high	785	0.999	GCA_003943125.1_01207
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	197387	197587	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	54439	54639	GCA_003943125_1_3_219	GCA_003943125_1_3_219	-	324150	.	.	hypothetical protein	MTRLQKLISAKLQSYNSLKNIKRVGKNFPLFLYAILAYLQVLIFSLRAYALDNDRFPVIENEYIIL*	.	hypothetical_protein	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0074	persistent	ambiguous	low	46	0.229	GCA_003943125.1_01208
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	CDS	197541	198077	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	54593	55129	GCA_003943125_1_3_220	GCA_003943125_1_3_220	-	324150	.	COG0250	Transcription antitermination factor NusG [Transcription]. 	MDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQEFDIHVKVGDTVRIIDGAFADYTGKITEIDNSKVKMIISMFGNDTVAEVNLSQIAEL*	mmseqs_cdd	nonviral_gene	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_CDS_0075	persistent	direct	high	536	0.998	GCA_003943125.1_01208
GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote	cenote	tRNA	163758	163829	GCA_003943125.1	RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125.1_RJOO01000003.1	GCA_003943125.1|RJOO01000003.1	GCA_003943125_1_3	GCA_003943125_1_3@C11	20810	20881	tRNA-Cys	tRNA-Cys	+	324150	.	tRNAscan-SE score: 55.6	Cys	NA	tRNAscan-SE	.	C11	55129	142949	198078	GCA_003943125.1|RJOO01000003.1@region_142950_198078@tool_cenote_tRNA_0001	.	.	.	.	.	.