core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	219499	219876	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	1	378	GCA_003943435_1_1_228	GCA_003943435_1_1_228	-	391447	.	.	hypothetical protein	MKKYLSWMMACTFLLVYVWLMNTLSLWGTENIVVFSFFLLIPLLPFLAPFLGILMFFNNKKLIITGYLLSLTAGIYLVNAIKSYPIRIYMRGEMTQEEYLSLILSLVGYLFISTLFFIFRMKKLK*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0001	shell	direct	high	377	0.997	GCA_003943435.1_00229
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	220187	220552	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	689	1054	GCA_003943435_1_1_229	GCA_003943435_1_1_229	-	391447	.	PF10852.8	Protein of unknown function (DUF2651)	MKVHKKEIFFLLPLFFFYFVFYILLRYGPMDSILSKGLVVGNVLIYSPLATLLVSLLYAALYGFSLRFSFLVALLFFLTIFTFGEWIPLYHAAYFLFSLAGNGLGHVIYRFTRKNSRAENQ*	hhsuite_tools	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0002	persistent	direct	high	365	0.997	GCA_003943435.1_00230
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	220589	221902	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	1091	2404	GCA_003943435_1_1_230	GCA_003943435_1_1_230	-	391447	.	cd03817	UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (EC 2.4.1.337, UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.	MRIGLFTDTYFPQVSGVATSIRTLKTELEKLGHKVFIFTTTDKDVNRYEDWQIIRIPSVPFFAFKDRRVAYRGFSNALEIARQYQLDIIHTQTEFSLGLLGIWIAKELRIPVVHTYHTQYEDYVHYLAKGMVIRPSMVKYIVRGFMSDLDGVICPSEIVYDLLVGYKIKAEKRVIPTGIDLAKFDRPELSREDIKKLRFKLGIAEDEVMLLSLSRISYEKNIQAIVEALPMVLEENAKVKLVIVGDGPYAEDLKALVTQLHIKDSVIFTGMIAPSDTALYYKAADFFISASTSETQGLTYLESLASGTPIIAHGNPYLDNVISDKAFGTLYYESRDLAGAILEAILATPDMDEKKLADKLYEISAENFGRRIYEFYLDLTISKDFHNDLNPEETMAKRLAKTIVYLPGKIMSLPVNSSTRMIKASKKQIKNIRKYWE*	mmseqs_cdd	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0003	persistent	direct	high	1313	0.999	GCA_003943435.1_00231
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	221904	222902	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	2406	3404	GCA_003943435_1_1_231	GCA_003943435_1_1_231	-	391447	.	CDD:cd03814	GT1-family-of-glycosyltransferase	MKVLLYLEGKSVLEKSGIGRALQHQMHALDLAGIPYTTDVLGDYDVVHINTYGPRSLLLLHAAKRRGKKVIMHGHSTKEDFENSFIGSNLFAPLFGKYLAHMYKMADFIITPSEYSKKLIESYGVTTPIMAVSNGIDLSKYKKDERKEEVFKKHFQIAEGQKVVICAGLYFRRKGIEDFVEVARRMPDVRFIWLGSINLWLIPRKIRDLVLYNHPENVEFPGYFKGAVFQGAMSGSDAFFFPSYEETEGIVVLEALASGQHVVLRDIPVYNGWIDEDSAELCHNVDEFVESLRKVLDGKVDKREAGYRVAESRSIDDVALKLVKAYQTVLEM*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0004	persistent	direct	high	998	0.999	GCA_003943435.1_00232
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	223044	226715	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	3546	7217	GCA_003943435_1_1_232	GCA_003943435_1_1_232	-	391447	.	PDB:1UAA_B	Replicase	MRRIPFLKEQDILVKQAEEAASDKPQKRTPEQIQAIYSSGQNILVSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFTVKAAGELKERLEKELSLVLKETSDQELRQHLAQQLAEIANADIGTMDAFTQKVVNKYGYLLGLAPHFRILQSASEQLILQNEVFDQLFDTYYESDQQELFSRLVKNFTGKRKDISGFRQQIYSIYSFLQSTSNPRKWLEETFLLGYETSDFEAERERILSGSRQSLLDLEDFFQSHLAHEGQAFAGAKYQENVQAALDILAELTEQTGSEQLLDLIQRFLELAKTSNHQAFTARVGKNADELKKELAQIYNEARKPLIERIKELDVRLYHLNFMEQHQSEALPQLDLLRDFVRDFSQAYLQRKVAENAFEFGDISHFAIEILENYPEVRRFYQDKYHEVMVDEYQDTNHTQERMLELLARGNNRFMVGDIKQSIYRFRQADPQIFNDKFKLYQADPSQGKLIILKENFRSHIEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKRDPNPANQAEFLLYDGSADSEEEDSDQGLPSISAGEVALVIKEIIRLHNEEGVDFKDMTLLTASRTRNDLILAEFDRHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLNDYALTALLKSPMFDFDEDELTRLALQASSSKSMENLYEKLRNALTDQGLEPQLIHGELRKKLQHFQETLNDWRNYSKTHSLYDLIWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFISMIDRILKNEHDLASVPLAAPKNAVQLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRQKGIGIKYVADVPVVAQDPHAPKQIRISMETLPYQQNAEELKLASLSEQMRLLYVAMTRAETKLYLVGKGKQAKLQERKWGTSQNGRLSSSLRSQLTNFQDWLYAIQSVFEKENLAYQTRFVTDQELTDEQIGVVEQADPIPVDDLTGNRQSEDIRRALDILENVDRLNSLYQAAIELPSVRTPSQIMKFYEPVMDSEGLDIMDAPRSYQTQLSFELPDFGKKKQVTGAQIGSAVHELMQRIPLDRPITKTSIRQALTQVQADAVVKKEIDLAKIEAFFATELGQLIQQEADHLHREAPFAMLKQDPASGQDFVVRGILDGYLLFDDRIVLFDYKTDRYHEPTGLVERYRAQLDLYAEALSRSYGLSQVDKYLILLGGTELQVVKVD*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0005	persistent	direct	high	3671	1.0	GCA_003943435.1_00233
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	226712	229999	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	7214	10501	GCA_003943435_1_1_233	GCA_003943435_1_1_233	-	391447	.	PFAM:PF12705.6	PD-(D-E)XK-nuclease-superfamily	MKLLYTDIRSPLTAHLAKQAQDLAAAGKRVFYIAPNSLSFEKERAVLEALENHASFAITVTRFAQMARYFVLNDVQDGQPLDDIGLGMLFYRILSEMDDRELKVYGRIKKDAQFIQQLLDLYHELQTAQMTFADLNYLEEPEKREDLLKIFTAFSAALQAGNYDATSKLTIFAQHILAGDLDGELANLALVIDGFTRFSAEEEYLVDLLHRKGVEIVIGVYASQKAYRTAFREGNLYQASVDFLLKLAQTYEVKPEYLAGDSTQSDDAFGKISKILESRYDFSETHVELTEDDRSHLEIWSVRNQKEELEYVAKSIRQRLHDGARYKDIRLLLGDVEAYQLQLKTIFDQYQIPFYLGRSESMAQHPLVQFLESLERLKRYNFQTEDLLNLLKTGLYGGLRQEELDSFEQYLRFAEIKGAAKLGRDFTINRQEKFDLKRLNVMRRSLITPLLDFFKSRSQTATGLLAKFTNFIKEVRLDTNLTGLLEDASQQEVERQEEVWKTFCHVLEQLAQVFDGSKLKIDDFLALILSGMLLAKYRVVPATVDVVTVQSYDLIEPMAAPYVYAIGLTQERLPKLAQNKSLLSDEERQALNQATGDEAELQIASSENLKKNRFAALSLLNSATEDLVLSAPVLINEVEDAMSSYLTELEIAPISLPIISKLPQASSDDIGTYRALLARVIDLYQEDIDREWTLEEQTFWAVAIRVLRKKLAAEGISIPQISKELKTEPLKSETLQALYPSEQPLRLSASALNEYFKNQYAYFLKYVLRLQEEWTIQPDARSHGIFLHRIFEKVMQEHLEQDFDTRLQRAMEETSWEAEFETVYGENGETQFARRLLLDTARATGRILAQSDGLEVIGEETDFGRDDRPFLLLDNGRALQVSGKVDRIDRLTETGSLGVVDYKSGDTKFSFEKFFNRLNSQLPTYLAAIREMPEYQEDKGIFGAMYLQMTEPLASLKDTKALDEAVKQVMKSQVYKGLFLADQAKDLGTNYEKSKVNLLTKEELEVILAYNAYLYQQAAEGILAGRFAINPYTENGRSIAPYVDQFKAITGFEANLHLGQARQLTKLNLEQYEKRPTGEKLRQAWLEKIKEELDK*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0006	persistent	direct	high	3287	1.0	GCA_003943435.1_00234
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	230139	231335	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	10641	11837	GCA_003943435_1_1_234	GCA_003943435_1_1_234	-	391447	.	PRK12736	elongation factor Tu; Reviewed	MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPSSVNQPKDYASIDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKIDLVDDEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDTKYEDIIMELMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEEIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGIQRDEIERGQVIAKPGSINPHTKFKGEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEMVMPGDNVTIDVELIHPIAVEQGTTFSIREGGRTVGSGMVTEIEA*	mmseqs_cdd	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0007	persistent	direct	high	1196	0.999	GCA_003943435.1_00235
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	231458	232456	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	11960	12958	GCA_003943435_1_1_235	GCA_003943435_1_1_235	-	391447	.	pfam13791	Sigma factor regulator C-terminal. This family is the C-terminal domain of a sigma factor regulator, this may represent a sensory domain.	METFEILAKKSKRKRLWKTVAISSLVSLALLLLLGKGLIELASSNGRNLQKEYEVMSEIAYPNVDYDSLYYTQNSLFSGTLHSDRFKDLDGVKVAYPSYEGNYSLIGAFRDPTAEGTYLSLSGTYTRTLRQKYPVFYNINAKGTIDTKRIPQELASVKEMPNQLVEVALTFDKAYTYKEIQQMIPNNLKINWYWIGSQSEDVDNTGALRTDPKTTYGANASLLFTYDSDVRKKAKEAKKEQQTFLDYLKKADKNLFPSVSGYNTYNDVQSYLNKFSQLDIREAENRDQLTFSGVILTGKAENFTQLEGKEWIYASSIGASVPNQPYYKLDKE*	mmseqs_cdd	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0008	persistent	direct	high	998	0.999	GCA_003943435.1_00236
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	232443	232958	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	12945	13460	GCA_003943435_1_1_236	GCA_003943435_1_1_236	-	391447	.	TIGR02950	RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:	MWGGEIIKLDEYENILIGFAREIVFYLQKSGASKAEAEDVVQDVFVKMLETDLVIPAEKMRAWMYRVSIRRYIDRYRRDQHYLEILQKEFFKQDVIQPFENDYYELLRMTIEELPTKEAMLLDLYYFQNFTVKEIAHIMSYSVSKVKVQLMRSRIKLRHKLEKKGYKNGNI*	mmseqs_cdd	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0009	persistent	direct	high	515	0.998	GCA_003943435.1_00237
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	233201	234136	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	13703	14638	GCA_003943435_1_1_237	GCA_003943435_1_1_237	-	391447	.	COG3152	Uncharacterized membrane protein YhaH, DUF805 family [Function unknown]. 	MFSAYKKFWTRYADFSGRSSRSDYWWVVLCNFLITLPFSLIALFGFLIPLFSEIYYAGLYDYEPDLSGAMAGAGLAVFIMFLLAIYGLATIVPHLAITVRRLRDAGFHWAFIFLGVGPSIASLIPVLNILAALVSLPCGIALIVLLCQASKPAQPVKGAPYGQQGFQGQQFGQAQQPVQNQQFVQPGFQGQQQPTQNQQFGQVQQPAQNQQFSQPASQEQPFAQQQAPVQNPEFGQPQQPFGQNQVNQPTQPFAASQAQTQESTQSAFSASVSEPAESVHSVEAHQSQAETAEQALGTASEQINNSESISQ*	mmseqs_cdd	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0010	persistent	direct	high	935	0.999	GCA_003943435.1_00238
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	234243	234788	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	14745	15290	GCA_003943435_1_1_238	GCA_003943435_1_1_238	-	391447	.	COG2333	Metal-dependent hydrolase, beta-lactamase superfamily II [General function prediction only]. 	MLEVAKHFSIKEIYVSKGSLTQSDFVEKLERMQTGVHAVEVGDSLPIFDGALQVLYPEETGDGSNDDSVVLYGQFFGTSFLFTGDLEEKGEATLMRRFPQLKVDVLKAGHHGSKGSSSPEFLHQLQPKIALISAGKNNRYKHPHQETLDRFKNIQTQIFRTDEQGAIRFSGWGSWEIETVK*	mmseqs_cdd	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0011	persistent	direct	high	545	0.998	GCA_003943435.1_00239
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	234864	235760	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	15366	16262	GCA_003943435_1_1_239	GCA_003943435_1_1_239	-	391447	.	.	hypothetical protein	MDLDLGNYLGVFSSVEIKDLLLLQSSDLYDDNIPESHHLYMIFGFEKFYVDSVTKNETKENELIVKVKTADEALELIWEDEENIVSFDKSLDNRCVIINGVTYQILDLILDSIIKNGNQIVSEILYIGQAKGRTESRNTGKRLASHKTLQRILADCHDYKKDVDVRVVSFSIGENVMWTTLTTPETSNAKIEDIYEPKSKEFKLKISDASLINLVEAKLINYLKPEYNDVYKNKSVPSKEHKTYIEYNKFFNSMNIDLSKLDNFYFKQPNIDFNPRRQFISNKLNPTEYMEIIRDSLY*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0012	cloud	direct	high	896	0.999	GCA_003943435.1_00240
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	235819	237384	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	16321	17886	GCA_003943435_1_1_240	GCA_003943435_1_1_240	-	391447	.	PDB:4BQQ_A	Integrase	MKNVITIEANAPRNSELASISLPKKRRVAGYARVSTDHEDQTTSYESQMRYYAEYISTRSDWEFVKMYSDEGISGTNTKLRVGFKSMIEDALAGKIDLIITKSVSRFARNTVDSLTTVRKLKEVGVEIYFEKENIWTLDSKGELLITIMSSLAQEESRSISENVTWGLRKQFAEGKVHFPYTNVMGFEKGENGEIVVNQEEAKTVRYIFQQALLGKTPYSIAKDLTQQGILSPSGKNHWSSVTIKRMLRNEKYKGDALLQKTYTIDFLSKKKNINKGELPQYYVENNHEAIVDKETFDAVQASLDRKEKGKGSTTLFSSKLVCGDCGHYFGSKVWHSTSKYRRVIYQCNEKYKGEKKCTTPHVTEDEIKDWFVSAINKVISNKDEIISNLETLLEISGTADLEQRMKELETEVEVVSQMISKLVTDNAVMPQNQDVYQEKYRNLVDRYDALIVELESVEKEHLDKAKRNKELQAFLKTLKSQECLVTEFDDLLWETAVERIIIKENRNIEFIFKNGEVTVH*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0013	cloud	direct	high	1565	0.999	GCA_003943435.1_00241
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	237381	238619	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	17883	19121	GCA_003943435_1_1_241	GCA_003943435_1_1_241	-	391447	.	PDB:4BQQ_A	Integrase	MRIVRRIQPMMTPQKPKLRVAAYARVSDSRLHHSLSTQVSYYSRLIQSHPDWELVGVYYDEGISGKEQSNRQGLQDLLKACDDGKIDRILTKSIARFGRNTVDLLSTVRVLRQKNIGITFEKEGIDSLSSEGELMLTLLASVAQEESHNISENLRWQIKKKFEQGQPHTPQDIYGYRWNGENYVIEPDEAKVVRQVFQWFLDGDNAPMITKKLNEQGVLTRLGNPFTVSSVREFFKQEAYFGRLVLQKTYREPFSRNPKRNNGQKNKYIVEDAHEAIVSKSYFDVVLQEKERRYKVMYQESHMHKGTFRELIECSHCGKIMITRVDSKKVHRTIRYCCRTRDRFGTSSCPSKTLSEKRILATFEDKIGFKPDKNWVTENIKKVIYDSSVGLITVFPIKGRKYELKVRKEHFL*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0014	cloud	direct	high	1238	0.999	GCA_003943435.1_00242
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	238677	238838	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	19179	19340	GCA_003943435_1_1_242	GCA_003943435_1_1_242	-	391447	.	pfam20612	hypothetical protein	MTNDKLQDEMTYQLTIIQADRLLKSRIISEEVHQQFKEKMLEKYQPFISRLST*	mmseqs_cdd	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0015	cloud	direct	high	161	0.994	GCA_003943435.1_00243
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	238943	239725	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	19445	20227	GCA_003943435_1_1_243	GCA_003943435_1_1_243	-	391447	.	PDB:5UDN_B	lysin	MTSKEKVVANALSKVNTKVTVPTNPYGGQCVALIDKIVQEETGKNMAYTNAIDCLDKAKANGFQVTYDAVGVNPQAGDIYVIRVPSHSFGHIGVCLADSDGTGLEGVEQNVDGYLDSNRNGINDQLEVGGGGYTRRVSRKWYSDGRLVDRHSGGLVGYMVGWFRLPYEVATSTKKVETSEDEDMKNFVVRSKSGKQGYVAVVNGAVFGIGHIDTVVQLQSAGAAHLTLDDDDFNRFLESQKFDDEKLVASVQALEKAIKQ*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0016	cloud	direct	high	782	0.999	GCA_003943435.1_00244
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	239715	240131	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	20217	20633	GCA_003943435_1_1_244	GCA_003943435_1_1_244	-	391447	.	PFAM:PF05105.11	Bacteriophage-holin	MHLAVSTNKLVFSGIGGVIGSIFGEIDGFLYGLLIFMLIDYVTGIMAAIVEKNLSSSIGKKGIFKKAMIICLVAVAHMIDQHVLKQGGAVRTAVIFFYFSNEGLSILENATRIGLPVPNRIKQVLRQLNEDKEDENDK*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0017	cloud	direct	high	416	0.998	GCA_003943435.1_00245
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	240142	241998	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	20644	22500	GCA_003943435_1_1_245	GCA_003943435_1_1_245	-	391447	.	PDB:5IV5_CF	Baseplate-wedge-protein	MADYGSNNDRGYNLLLRVEETGTSTANNTSTVRVQLWLRNGQTTFGMYNCSASVSIDGQTLSWSGRPDMYSMNSSLHLIDKTITIAHNSNGQKTIGFSATFSGSGGWSPGTLNTGYQSLRLRDIPRSSTASVSGNMMGSPITISITRASGDFTHKVTWQFGSLSGVVATGATTSCSWTPEVAKLAPQIPNATSGIGTILVQTIYGGKVIGESRIQVTLQLPSSVVPSLSSISLSDLNTIAQNAITGNTFVSLESNPKVTFNGATGIYGSTIPASGYRAEVFKFEGNSWIQLQNVATAQNGGVGGINHVGRAKISAFVTDSRGRQSPRKEVEISLLEYFKPILSFTSVRVGTAMNQLNVIRKVKIAPLIVGNSQKNRATMTWDILDLSTGTKTTNVGGAANWSTTTEHTKENFQATLNGSYDQTKSYTIIGHLRDLFYETDFEFTVGPEKVVYGLSPTGMGIGKAWTRGVLDVDGSQPSYFDGDIIMRNKKLIDIFYPVGTIYESTSYANPSTFMGGKWERFGNGHVLVGVSETESEFNTVSKTGGSKTHTLTINEMPVHSHPQYVSANSGNQAIRRDYSSDGGASLYPQGNNTGNSGGGQAHNNLQPYITVYRWRRTA*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0018	cloud	direct	high	1856	0.999	GCA_003943435.1_00246
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	242011	244899	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	22513	25401	GCA_003943435_1_1_246	GCA_003943435_1_1_246	-	391447	.	PDB:3GS9_A	tail-protein	MLFLLDGQTKTPKWNGLPLHETLSAEVEETLNGDFTLQFDYPITDSGIYKELVTDKLILCPVPYANKQLFRIKKPIEENDRVRVTCQHITDDIMRRSILPVSNQNVTCQSALGQLISKAKRDIARFSFDSDITKKRSFNTTETATLYKVLMDGKHSIVGTWEGELVRDNFLFTIKEHRGKNRGVAISTHHNLEKFDRTRSSQSIVTRIYASSTFKPEGEKEEKTLSVMVESPLIHQYPYVHEAEYENNNLHTEEELRQWAMAKFSNDHLDQVSEVIEIEAFELDGQEVQLGDEVTLKSRLHQVDVVKKVVAYRFNALTEKIISISFDDTVSFGGQGVSGNPISSVANELLTLNDGKVQRQIERERANLSLVLDSNMSRVSKDVEDGIERAKAEAVRSGNQAAVDYLSSEAAEIRFAAIQKAKIDELTVSNSAWMRRLVSHQVLTEYLNAIEVNANKVVIPGSHKPVFSLDSNGNISIDTPLLKVRGEELATKSQLSKLSLTPGPKGDRGISISQIEEYYLVSNQKTGVLTSTSGWSKTIPVLTDTSKYLWNYKRTVFTDGNETLTTPVVIGVYGNKGDIGQTLYTWKMYADSDKGEGISSSPKGKRYLGLAVNRPTATPSTNPSDYTWSSFFEGTVLGGRNYIDDYAMRETSFTNLQSEWRKEIVEDSTSVSDISIKMTCTKSGSGGFKRDFFDLRTCIGQTMTFAVDMKTSRAVSMMIGSELGGTKSIQLTTNWERVVSSWKVSSNVAYSFVFTLSSGTWVQGDVVWLRNVQLEDGNVATTPGPSLADLMKQIDGKADQSFMKQQLDILTEKTESIRVDMEARALASEVSDWLKTYKEFEKSNKETLTKFNQDFVANTQRIAAIEADLKSNALLLQFVNTYLRAGDNGVIIGKKDNSEFIELTPQGMMIKSAGNAVMTVTSGVIKIHHGVFVETLQVGYYRLEAARHNPKHLVCRFIDSKT*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0019	cloud	direct	high	2888	1.0	GCA_003943435.1_00247
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	244899	245624	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	25401	26126	GCA_003943435_1_1_247	GCA_003943435_1_1_247	-	391447	.	PDB:2X8K_A	Distal-Tail-Protein	MIQHNALIIDGLSTASFPYKILVEDRPSFHIPTSKSQLQEHDGLSGGLVLTNKHRKVIEKAYRIHLIAATEEQINEFSALLTREGFWLESERMKTTRYWCYKVDSFDIVQDNLGVFTLEVTFLCHPTRYFNDVSEYTLTKNGTIPLLGSALSYPKITVSGKSTGETSFTIGEQVIGLEQLNKTLVMDNDPHHPSFLTESGELVHWSGDFITLDANQKDKKVGVVLGTGITSLHIEILWGWA*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0020	cloud	direct	high	725	0.999	GCA_003943435.1_00248
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	245621	248740	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	26123	29242	GCA_003943435_1_1_248	GCA_003943435_1_1_248	-	391447	.	UniProtKB:R4KJ43_9FIRM	Minor-tail-protein	MAGNIKGITIEIGGDTQPLQRALKGINKESAESTKELKQIDKALKFDTGNVTLLTQKQEVLSKQIATTKEKLETLRQAQSQVEAQFQRGDIGAEQYRAFQREVETTQNVLKSYETKLEGVNRALDSHGNTVESNRSKLNSLEAEQAQLASESEKLNSTFRLQESQLGSNASESEKLALAQRRIASQSELVERQIANLERQLELTKSEYGENSVEANRLEKTLNDTKTAYNNLQQEMEGLSNASQQSAASLEQTNGLLKADILMEFGDRLGELSQKLIEFGQQSLEAFREVDEGMDIIITKTGASGKALEGMQDIATELATSIPTDFATAGSAVGELNTQFGLTGDALSQASALLIKYSEINGSDVTQSAISAKQAIEAYGLESKDLAMVLDTVTFTSQQTGVGVQDLMSKVVSGAPQIKSLGLSFDEGVALMGRFEKAGVDSSAALSTLSKAAVNYAKDGLTLQDGLAKTVEQIKNSTNETESLTLASEVFGSKAAPRMVDAIKRGAFSFNDLSGTAKNALGVVTSTYEATLDPIDKFTIAQNTAKAAMAEVGGVLAEALAPVLELLAQLLQAVANWFSNLPSPIQTFIVIMGGLITVVGLLLPGLLALQAAAVAMGTTIGGLVVAAAPIVGTVLGIIAVIALLVVGIQELWQNNEGFRTAVIEIWNAIYAFISVILQEISTFIMTIWGTLTTWWTENQALIQVAVETVWNAISTVIQTVMSLIGPYLEAAWANIQLIITTAWDIIKTVVETAINVVLGIIKAIMQVITGDWSGAWETIKGVLQRVWQAIQQIVTTILSAIGQFISNTWNGIKDTISNVLTAISGIVSSIWNTIKSVITSVISSIVSFVSSGWSGIQQTISSILSGISSTVSSVWNGIKNSISNAINGAKNVVSSAINAIKNLFNFKISWPHIPLPHFSVSGSANPLDWLKGGLPKISIAWYAKGGILTKPTAFGMNGNQLMVGGEAGKEAVLPLTKQNLAAIGEEIASTMGTGGNVINVSITDVVIREEADIKRLANQVAERIHDELTRIQSLRGVRL*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0021	cloud	direct	high	3119	1.0	GCA_003943435.1_00249
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	248758	248880	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	29260	29382	GCA_003943435_1_1_249	GCA_003943435_1_1_249	-	391447	.	.	hypothetical protein	MDDLKHISIGMALDYQTDYVALRSDKPQTRRATQADFDNF*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0022	cloud	direct	high	122	0.992	GCA_003943435.1_00250
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	248919	249338	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	29421	29840	GCA_003943435_1_1_250	GCA_003943435_1_1_250	-	391447	.	PFAM:PF12363.7	Tail-assembly-chaperone	MRKQVTICGKVYPLASNAYTPIAYKEQFGKDYFQDLFQMINAKSILDQLNQLEEGEELTAQNMDVSILSDFDMTFFHRLFWVFAKSANPRVKAFDVFFMEMEELPIQEIGPVLMEMLNQGMSTRKKSMKPMKRVKKSSR*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0023	cloud	direct	high	419	0.998	GCA_003943435.1_00251
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	249335	249925	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	29837	30427	GCA_003943435_1_1_251	GCA_003943435_1_1_251	-	391447	.	PFAM:PF04630.11	tail-tube-protein	MAEKNKVTFGLQDVHWAEVTTEGSDGALTYGNVERLRGAAELTLEATGDSGSYKADNINFYTTESNDGYSGTLKVALLTQEFLTRVLGETLDDTNKVITESSNATRKNFALMFRFEGDKKETLHVLYYCYASRPTVGSKTKNGSDINEVELKFTASPRPLDQVVRRRTTEETPETVKKNWFKSVYEPTVASGGSRT*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0024	cloud	direct	high	590	0.998	GCA_003943435.1_00252
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	249938	250255	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	30440	30757	GCA_003943435_1_1_252	GCA_003943435_1_1_252	-	391447	.	PFAM:PF05657.10	tail-completion-protein	MSEKEFFKQLKALHLPIAYHHFEEGHSPSPPFMVYYSPQSENFGADNQVYHKGAQFILELYTRKKDLDVEGKIETFLTEQHLFFDKVETYIDTEQLYQVAFHFAF*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0025	cloud	direct	high	317	0.997	GCA_003943435.1_00253
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	250252	250611	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	30754	31113	GCA_003943435_1_1_253	GCA_003943435_1_1_253	-	391447	.	PFAM:PF04883.11	putative-tail-component	MRADELSRAIEKELEEYLHQTTETVVEAVDDVTDEAIATLKSTSPKRSGRYVRGWTSKETSSTSTGKTKTIHNRTPGLTHLLENGYAKQNGGRVSGRPHIGPVEQKAVQALEKKIRGNL*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0026	cloud	direct	high	359	0.997	GCA_003943435.1_00254
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	250608	250937	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	31110	31439	GCA_003943435_1_1_254	GCA_003943435_1_1_254	-	391447	.	PDB:2KZ4_A	Head-tail-adaptor	MKIAPLNQRVLFKKRVITQDDIGNETSQFTNLFSRWASVNQANSDEIFEVGQTKRKLQLIVTLRYDSEVASLDTTNTQLIFQGKSFNILSIDHVFFEKKMVKCRVEEEP*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0027	cloud	direct	high	329	0.997	GCA_003943435.1_00255
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	250938	251201	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	31440	31703	GCA_003943435_1_1_255	GCA_003943435_1_1_255	-	391447	.	CDD:cd08054	Head-Tail-Connector-Protein	MLTLLEAKIYLRVDTSGEDNLIKVLIATSEELCKDVLRVDELVDTPLIRSAMLYAVAYLFEHREEANHHDLKETLYHLLGGLRKEVF*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0028	cloud	direct	high	263	0.996	GCA_003943435.1_00256
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	251205	252392	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	31707	32894	GCA_003943435_1_1_256	GCA_003943435_1_1_256	-	391447	.	PFAM:PF06673.10	Major-Capsid-protein	MDKILELREKRAKVWDKAKNFLDSCRDEKGMISQEDSEHYDKLEQEVVDLGKEIDRLERQERIERELSQATSAAIVSQPRTDAGGDEKTGTASTVYNQSFWKNVRQKNFFDVNNTLNIGNDGQGGYLVPDEYENRLIKALEEENFFRRLATIIKTSNGERKIPVVTGHGTAAWMDENGTYPESEETFGQVTLGAYKVGTAIKISEELIHDSVFDLESYMAEEFARRIGSKEEEAFLIGDGSGKPTGVFTTVTEGVTSTGANITFDDVMDLYHSLKSPYRKNSVWILNDSTIKALRKLKDNNGNYIWQPSVQAGVPDMILNRPYYTSSYAPEIASGQKVLAFGDFSHYWISDRQGRSFKRLNELYATSGQVGFLGSQRVDGKLVLPEAVKVLTMKG*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0029	cloud	direct	high	1187	0.999	GCA_003943435.1_00257
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	252408	253094	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	32910	33596	GCA_003943435_1_1_257	GCA_003943435_1_1_257	-	391447	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MHKFWNWAKNEGERTLFLNGVIASESWFGDEVTPQLFKDELLSEQGDITLWINSPGGDVFAAAQIYNMLMDYKGAVTVNIDGIAASAASVIAMAGTIVNMSPVSMMMIHNPATFASGDKREMEKAIQLLNEVKESIINAYEIKTSLSRQKLSNLMDGETWLNAKKAVELGFADQIIFDGTHDNDESQDAYAFSMQTVTNQVVAKCEQLIDKPKVAVSTLEKRLQLLKP*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0030	cloud	direct	high	686	0.999	GCA_003943435.1_00258
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	253087	254328	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	33589	34830	GCA_003943435_1_1_258	GCA_003943435_1_1_258	-	391447	.	PFAM:PF06074.12	Portal	MGILELIGLKRARDKPTNSYEGSDFSYLFGRTTSGKNVNEMTALQTTAVYACVRILAEAIASLPIHVYKHTDEGKEQDVNHQLYYLLHDEPNPDMTSFVFRETLMSHLLIWGNAYAQIIRDGRGQVLALYPLLPDRMTVKRDDKGELYYVYQRSEEDNPNFKDKGNIILKKSEVLHVPGLGFDGLIGYSPIAMAKNAVGMTLATEEYGASFFANGANPGGVLEHPGILKDPSKVRESWNQVYQGTNNSHKVAVLEEGMIYKTIGIPPNEAQFLETRKFQINEIARLYRIPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPWVVRFEQAFQKALLLPDEKKTYFIKFNVDGLLRGDYQSRMNGYAIGRQNGWLSTNDIRRLEDMNPLSKEEGGDLYLVNGNMTKLEDAGGFIKDA*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0031	cloud	direct	high	1241	0.999	GCA_003943435.1_00259
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	254340	255932	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	34842	36434	GCA_003943435_1_1_259	GCA_003943435_1_1_259	-	391447	.	PFAM:PF03354.14	Terminase-large-subunit	MTYHYKPSPFMLPTSHYDEKKADRAVAFIQNLKHTKGKWAGKHFLLLPWQEQIIRDLFGIVKEDGNRQFLSAYVEIPKKNGKSELAAAIALYLLYADGEASAEVYGAACDRNQASIVFDVAKQMVGMSNPLNKRSKIMGATKRIVNYNNAGFYQVLSAETGTKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAGTDKNSICYELHTKALDILSGRKKDETFYPVVYGLANDEDWQDEENWYKANPSLGHTIQIDRVREAYRNAIDNPAEENVFKQLRLNMWTSSTVTWIAEHVYDKGNRPIVESSLLGRECYAGLDLSSTSDITAFVLVFPPRTEDESYIVLPYFWLPEDTLPLRCRRDHVLYDVWERQGYLKTTEGNVVHYGFIERFIEDLSTKFNIKEIAYDRWNATQMVQNLEDMGLTVVPFGQGYKDMSPPSKELYKLMMEGRVTHAGHPVLKWMAQNVVMRQDPAGNIKPDKEKSVDKIDGIVALIMGLDRCIRHKGDDGSIYDQRGILSF*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0032	cloud	direct	high	1592	0.999	GCA_003943435.1_00260
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	255934	256410	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	36436	36912	GCA_003943435_1_1_260	GCA_003943435_1_1_260	-	391447	.	PFAM:PF05119.11	Small-Terminase	MSDLAQRGRKPKPTGLKVLEGNLGKRPLNHKEPKPTKKAPRCPSWLEEDAKKEWKRMSKVLESMGLLTDMDMTAFAGYCQAYARWKEAEEFLTKHGSIIKTPNGYLQQVPQVSIAQTNMKIMLKFSEQFGLTPSARSRIQADSSDGEQDEMESLLREV*	hallmark_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0033	cloud	direct	high	476	0.998	GCA_003943435.1_00261
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	256920	257018	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	37422	37520	GCA_003943435_1_1_261	GCA_003943435_1_1_261	-	391447	.	.	hypothetical protein	MWELVVIDRGERHYVCDLLRESSTDPSYINGE*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0034	cloud	direct	moderate	98	0.99	GCA_003943435.1_00262
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	257023	257235	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	37525	37737	GCA_003943435_1_1_262	GCA_003943435_1_1_262	-	391447	.	PF14192.6	Domain of unknown function (DUF4314)	MNNGAKERVECLYPVGCRVKLLEMDDPFPPPIGTLGTVYGHDDLASVLVHWDNGSGLSVVYGVDRIVKVE*	hhsuite_tools	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0035	cloud	direct	high	212	0.995	GCA_003943435.1_00263
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	257298	258566	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	37800	39068	GCA_003943435_1_1_263	GCA_003943435_1_1_263	-	391447	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MNQLTFIDFFAGIGGFRRGLELAGMTCIGYCEKDKFAVRSYQAMYDTEGEWYSDDITKLKPNDIPKADIWTAGSPCQNVSIAGKRAGLRAERSGLFFTLVDLLKSQSEEDKPEWLILENVKGLLSSRRGVDFLDYLLELDEAGYDLEWQVFNSKDYGVPQNRERVYTIGHLRSRGRRQVLPLQPESSGNLKQLVGGMQSYRVYDTDGISTTLVGTGGGVGAKTGLYLIDQSTTKPKVTDQARCITARYTAGSTKRTAMNSGVMEVQPILTPDRVNKRQNGRRLKEKGEPMFTLTSQDRHGVVEGIKVRNGTKQGYQVAELGDSVDLSYPASPTKRARVGKGIAHNLSCSGQMGVVVWNGRMVKIRRLTPRECFRLQGFTDDLFEKAQAVNSDAQLYKQAGNGVTVTVVYAIGKAILSCLNLR*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0036	cloud	direct	high	1268	0.999	GCA_003943435.1_00264
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	258563	259810	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	39065	40312	GCA_003943435_1_1_264	GCA_003943435_1_1_264	-	391447	.	PDB:5HFJ_C	Adenine-specific-DNA-methyltransferase	MTKESMTWLTLTVDQLNSASYNPRKALKKGDKEYEKIKRSIQEFGYVEPIIVNYDMTIIGGHQRLTVLKDLGFKEVQCVQVHIEDENKVKALNVALNKITGSWNEELLADLMLDLQEADFDTDLTGFEFPEIDQLFSKVHNKEVNEDDFDVDEELKKPTVAKQGDIWYLGKHQVICGDSTLPETYITLMGDKKANLVLTDPPYNVNVEETAGKIKNDNMSDSDFYKFLFAMFVNVEQNMESDASIYVFHADTEGYNFRKAFKDAGFYLSGCCIWKKNSLVLGRSPYQWQHEPCLFGWKNKGKHQWFSDRKQTTIWEYDRPKLSKEHPTMKPIQLMAYPIQNSSMRGTVVLDPFLGSGSTLIACEETGRICYGIELDEKFVDVIVKRYFEATGDQSIKVMRDGKEIKYADLVEVSV*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0037	cloud	direct	high	1247	0.999	GCA_003943435.1_00265
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	259810	260214	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	40312	40716	GCA_003943435_1_1_265	GCA_003943435_1_1_265	-	391447	.	PFAM:PF05766.11	HNH-endonuclease	MNDFKAKQVWKMRNEGLGYRKIANLLDLSLTAVKRYCSTNPHLKGYGQAVVAMISDGQRNGQLCKECLKPIEQPRKGRTKQFCSDSCRRKNWVTQHPEKADSHVCELCGKTFTAYGSPRRKFCSRTCARTPRRT*	phrogs_hmm	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0038	cloud	direct	high	404	0.998	GCA_003943435.1_00266
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	260273	260407	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	40775	40909	GCA_003943435_1_1_266	GCA_003943435_1_1_266	-	391447	.	.	hypothetical protein	MKSLNPWETKTDAPSNVKNRKIQKGVHKNRFLLTPNIIYDKVFH*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0039	cloud	direct	high	134	0.993	GCA_003943435.1_00267
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	260462	260827	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	40964	41329	GCA_003943435_1_1_267	GCA_003943435_1_1_267	-	391447	.	PDB:5H0M_A	HNH-endonuclease	MPRRPSTPCKQNGCPNLVPYGHKYCDNYKANYQLDTKSTKAKGYNAQWNKARLRYLKVQPLCVQCKVKGRLTKATVVDHITPHRGDQDLFWNQTNWQALCKSCHDRKTKTTDRYVEYTYRF*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0040	cloud	direct	high	365	0.997	GCA_003943435.1_00268
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	260829	261866	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	41331	42368	GCA_003943435_1_1_268	GCA_003943435_1_1_268	-	391447	.	PDB:5H9U_C	S-adenosylmethionine-synthase	MIISSEQVSVGHPDKICDQISDAILTECLKYDKSSRVAVETLIKDNQVVVAGEISTRHYFNLENIVRQVVEPLGMKNVRVTNLLGLQSSDIAQGVDNGGAGDQGMMFGYATDETPEYLPLPYVLATRVLEKLMSLGHPLLGKDAKAQVSYDYEKKRIDTFLVSIQHTEIANLAKVKRIVTEAMMSVALRYRQNLDFKVLVNPTGRFVLGGSFADAGVTGRKIVADTYGGFAHHGGGAFSGKDPSKVDRSAAYMARKIAKDIVREGYAKRCEVQLAYAIGVAEPVSVYVETFGTSRYTSTQLEGMIRERYDLTPQGIIKELHLLNVDYTKTSCFGHFTKAYLPWEK*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0041	cloud	direct	high	1037	0.999	GCA_003943435.1_00269
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	261914	262096	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	42416	42598	GCA_003943435_1_1_269	GCA_003943435_1_1_269	-	391447	.	.	hypothetical protein	MTKRQQEKLNALLTEIAKEELFVETLEKRWSDNLDFYDVSVWGIKRALERAYEAGQKSVK*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0042	cloud	direct	high	182	0.995	GCA_003943435.1_00270
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	262185	262412	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	42687	42914	GCA_003943435_1_1_270	GCA_003943435_1_1_270	-	391447	.	.	hypothetical protein	MWTDGRIDYQGQKVDYIAKVSPQPSEVGIDLGCIFKLDIEVAEETIVSYDRGWELYPETEEREAILEAVLMVLTV*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0043	cloud	direct	high	227	0.996	GCA_003943435.1_00271
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	262598	263101	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	43100	43603	GCA_003943435_1_1_271	GCA_003943435_1_1_271	-	391447	.	PFAM:PF05263.10	transcriptional-regulator	MDKVEYIAKNYRDMKMKLHLVQEKLLNYRPISENSVIQSLVFEKSEHEKVKKSKNHGRSELISLSFREKQEQENQEYLSSLLNTYYCLKMDLYYFEFVMELIPEDLKPLSKDLIYLGKSWTELEEIYEISHSTLAYRRRKILKQLRKCYRWTSKSLELKVEDYHIPI*	phrogs_hmm	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0044	cloud	direct	high	503	0.998	GCA_003943435.1_00272
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	263094	264470	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	43596	44972	GCA_003943435_1_1_272	GCA_003943435_1_1_272	-	391447	.	PDB:1Z6A_A	Helicase-of-the-snf2-family	MKLTLHNYQVVAKDFIIGHPYAAVILDMGMGKTATTLSAVNELMFDRFEVTKVLVIAPLRVANTVWSDEIEQWSELRNLRYSKIVGTPKQRKVALQKDADIYIVNRENLPWLVEQCSPYFKWDMVVIDELSSFKSWQSKRFKAFMTMRPYMKRVVGLTGTPSSNGLMDLFAEFKVIDGGERLGRFIGEFRSRYFEEGRRNGNIVYEYIPMDYAECQIQDKISDITISMKALDYLDMPELISTKKLVRMSEKEKEKYIQFKKEYVLSELDGLEVTAANAASLMNKLVQLSNGAVYSDDHTVVPLHEQKLDALEDILESANGEPVLVAYWFKHDLARITGRLEKLKVTSRVLKTEEDIREWNKGNVPVGLIHPAGAGHGLNLQKGGHHLVWFGLTWSLELYQQTNARLWRQGQEAETVVIQHIVTEGTIDEEILKALGNKDAQQERLIEAVKAQVGGTDG*	rep_hall_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0045	cloud	direct	high	1376	0.999	GCA_003943435.1_00273
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	264451	264732	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	44953	45234	GCA_003943435_1_1_273	GCA_003943435_1_1_273	-	391447	.	PDB:4QBL_E	Nuclease	MREKYVEQALVKSVKARGGICPKWVSPSFSGVPDRLVFLPKGKFGLVEVKAPDQKPRKLQVSRHKLFERLGFKVYVIDRIEMIGEVLDEIDIT*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0046	cloud	direct	high	281	0.996	GCA_003943435.1_00274
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	265017	267302	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	45519	47804	GCA_003943435_1_1_274	GCA_003943435_1_1_274	-	391447	.	PFAM:PF04735.11	dsDNA-helicase	MKFTLSHSGQTGIQTTTVYPNMVTITDKAILQNVAQFDHVAGLFVQNTRSNANFIKSDVLVMDIDNDHTENPDEWLTEEFLKDVFADYNFALVTSRSHMQTKAGKAPRPKFHIYFQINEVTDKDIYVAMKEELCNQYKFFDDHAKDAARFFFGNPNAQVIWHDSWLTIDEDLFQVVSIEDEEDFDADFYTPPSGPIQQGSRNSTMSVFAAKILKRLGVTQEARDGFDEQAQKCVPPLDKAELDTIWGSAVRFYNRTIKTSKSYVAPDAFNRETLKPDDYSDVGEAGVLAREYANKLAYTNATDYLYYDGTHWRENKQLALGAVVHFTDEQLAEAIALLESADKQLQSSGIDELTIKAGGKRLENAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPILSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAVSPSDQGMGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGSYSGKLSADALTMSNKRNVSPELAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPFHFVPSHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGRSDIKNFADHLYDNAAPAIMSWIIEGAEKAIKANFKTNVPTAVSSSVKAYREANDWLGHFLGDCCQVGDQLSEKSGELYSQYRAYCAKNMEYTRSTTDFYSALEQAGFKRKRTSKGNHILGLKLVEDGYDFLD*	rep_hall_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0047	cloud	direct	high	2285	1.0	GCA_003943435.1_00275
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	267579	267713	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	48081	48215	GCA_003943435_1_1_275	GCA_003943435_1_1_275	+	391447	.	.	hypothetical protein	MVNEPYIEPDDDVADTLIAISVISKLLARKIMEEENNEQNERTE*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0048	cloud	direct	high	134	0.993	GCA_003943435.1_00276
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	267688	268011	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	48190	48513	GCA_003943435_1_1_276	GCA_003943435_1_1_276	+	391447	.	.	hypothetical protein	MSKMKELNRLIHDMEETAKYYLRLVDEFKKLLTTEDETAPKSNPPKNEPQKEIQLEDVRAVLATKAKDGYKEDVRALLNAYGASSLSVLDPKHFAAVLEEAGGIGND*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0049	cloud	direct	high	323	0.997	GCA_003943435.1_00277
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	268004	269125	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	48506	49627	GCA_003943435_1_1_277	GCA_003943435_1_1_277	+	391447	.	pfam10926	Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	MTNHAILSASASHRWLNCPPSARLTEDLPDTTSDFAIEGSDAHELCAYLVEKALGRNARDPTEDLTFYNDEMQECAEEYRNYVMEQVEKARGYSRDPTVLIEQRLDFSKWVPEGFGTGDCIIVADGRLQVIDYKHGLGVQVDADHNPQMMCYALGALEMFDGLYNFDNVTMTIFQPRKHNISTFKIEKTELLEWAENVLTPKAELAFKGEGEMQSGKHCQFCKLKNVCRKRAEDNLALAKMEFADPASLDNEDIAEILPKLDLLISWANDIKAYALNQATDGHPIPGYKLVEGRSVRKFSDESAVSQAVIEAGYDPYEKKLLTITAMTKLLGKKTFNDLLGGLIIKPSGKPTLVPIDDSRQEMNLAKNEFKEE*	mmseqs_cdd	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0050	cloud	direct	high	1121	0.999	GCA_003943435.1_00278
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	269130	269678	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	49632	50180	GCA_003943435_1_1_278	GCA_003943435_1_1_278	+	391447	.	PDB:1JE5_B	DNA-Helix-Destabilizing-Protein	MTTKVITGPNTRFSYLNANEPKSINGSTPKYSASLIIPKEDTATINKIKAAIEQAYKEGESKLKGNGKSVPALSTLKTPLRDGDLERPDDEAYKNAYFVNANSPHKPGVVDGNRQEIIDTSELYSGIYGRASITFYAFNSNGNKGIACGLNNLQKLRDGEPLGGRTRAEDDFATEDDDDFLN*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0051	cloud	direct	high	548	0.998	GCA_003943435.1_00279
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	269697	269864	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	50199	50366	GCA_003943435_1_1_279	GCA_003943435_1_1_279	+	391447	.	.	hypothetical protein	MMYTILTCTIMGLWVLIGLYFGYMTIRDDIRNEVERKAKQNKEKLSQTPLSRKNK*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0052	cloud	direct	high	167	0.994	GCA_003943435.1_00280
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	269913	271868	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	50415	52370	GCA_003943435_1_1_280	GCA_003943435_1_1_280	+	391447	.	CDD:cd08642	DNA-Polymerase-I	MPIKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDFNKEKLPQDILEALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSLEGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAELKTLTGLEKPNSVLQMISWLREHGVATDSLDKKAVKELLKTVDETTAQVLKLRQQAAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARELFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLSEEELQPLVNSWRQANPNIVLYWWDVDNAVKTAVKELLPTSTQNIQFEVKSGILFITLPSGRKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLNDFKIVGHVHDEVIIECPIEQKLDEVASLMGIAPDWLSDINLRADGYECFFYQKD*	rep_hall_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0053	cloud	direct	high	1955	0.999	GCA_003943435.1_00281
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	271907	272365	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	52409	52867	GCA_003943435_1_1_281	GCA_003943435_1_1_281	-	391447	.	.	hypothetical protein	MDSRHSGLLRGTFRQCRIMGIPILTAFVPVAEEDYEQMVWWYNNSVNDYLKDYRKPSKNAPKISSWEAFTEKQDLPMIDDDIELYLFMDQFEFLKAKLAESNFQAPDILEMLFDGYENKEIFEKLGVQKSAGYKKVKNTQKEGLELYNKFNK*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0054	cloud	direct	high	458	0.998	GCA_003943435.1_00282
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	272822	273976	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	53324	54478	GCA_003943435_1_1_282	GCA_003943435_1_1_282	+	391447	.	.	hypothetical protein	MESKFTFKNKIEKYSLTDTFDPNSGQEILTLYCSHMPKPDYAKYNFDSLTGLVTSNVDSKKNNPFGEFLSINKSTFIDYLNKYGFLFDWESSENYDSIEFNYILEFQSRLKLLLSIFNNIAKSIEYKELLLSTFLLIGKPQLELNLGKSKFIFPSLFPFHVLRNSIPEKNLSDMTTRXTSSTGKITTYIKVENKFSENGYTCDLDFLYYQDIIENLQYDDFIKDIFYLYVNKPANLEPITAHIIDFIYLFFSKVGICDISNTNLKFEDEDLSNFMKSSELKNALLILSKEILALEINRGLAKVQPKINLDTLLPDWNLPDLISAFYFTLFYSNPKIAMYKICENIGCNTPFYVQRSNTIKKYCSESCKNASSQRRYRNKQKDFQ*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0055	cloud	direct	high	1154	0.999	GCA_003943435.1_00283
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	273998	275278	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	54500	55780	GCA_003943435_1_1_283	GCA_003943435_1_1_283	-	391447	.	PFAM:PF10117.8	restriction-endonuclease	MLTVPNKSLLDMCRVATNMEGDTFVGIKAEIIEGVQEVTVNFPLGFEIAKDVETARRDIIALVSVLQAHNDEESRLRTVNVNQALKTLNFPMEAYTFVIHDFINRGTYYKETEEYYIQTLGGRINWARTIKRVQPVVQGNGFKFLKMESKKQSDTDITLLTEINKFCVYEAFLNMGWLYQLPQPEKARINYNRSQFESIIKKKMATTFNDMERRLFQSMIDILNYKDRQEEPDKFYFGTNNFQYIWENLIDYTYGIANKTSYFPRTKWDLVFETKTSKGYALEPDTIMVHNDNVFVLDAKYYKFGQTNLMKDLPPSTSINKQITYGEYVANQDLLKKLHGQNSKVYNAFLMPFSKSHEIFQTDGMYQYIGEALGEWKGQDKTYERVQGILVDVKTLVHNSARNRTQYIQELSDLISEKVDEKLANM*	phrogs_hmm	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0056	cloud	direct	high	1280	0.999	GCA_003943435.1_00284
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	275259	276896	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	55761	57398	GCA_003943435_1_1_284	GCA_003943435_1_1_284	-	391447	.	COG1401	5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms]. 	MLKDLGVIFDEQSRIASEFLSKNDTEVILSTEFKENYKKHIDMLGDEIYFEQYNSKYHTNSKFIIIPNQWFYLAFIAAPYYKEFLKYKSILLDTLSGDDFKEFCQTARNGELDENLFDTISVDLTETDTLFLKKFVTDYHWWHGGKEIHRGDSFISPILALLKLINASSEHVAIIVKYLVDADFDLSDVNKYFELVEMDSRSVVTTNYDNTNLVGDNILLYGVPGSGKSFKIATEYCNDENRMERLVFHPDYMNTDFVGQIMPTVKENGDITYLFSPGPFTRIVKKAIDNPSEHYXLVIEELNRGNAPGIFGEIFQLLDRSASGESVYGINNSILATEIYGDKSHQIKIXSNLSLLATMNTADQNVFTLDTAFQRRWTMEMIENDVDLSEYGNYFIADTQYSWKVFNKVINKKILETSSQTLTSEDKRMGAYFISGNVLNIERIHQVPAGDSGNEFNKKNKRFAEKVLKYLWDDAFKFNREDIFDVALYPSLEAIIKRFTDNDNPENGRFDVFAKDIKEELENLKEATLIDNNNDTGEEDVDSTE*	mmseqs_cdd	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0057	cloud	direct	high	1637	0.999	GCA_003943435.1_00285
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	276959	278185	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	57461	58687	GCA_003943435_1_1_285	GCA_003943435_1_1_285	+	391447	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MTFDRHILESNRKLTTTNILSKKTTIAENLSGNDIKYLRKKYNLTQKELADALGLQKFGDRTIRRWEAEETHPSKLEQSSIQSFFNSLKNPPFIISENLPFKMIDLFAGIGGTRLGFQLTNEVETVFTSEWDKFAQKTYITNFGDTPEGDITQIDENTIPDHDILVAGFPCQAFSQAGKRLGFEDTRGTLFFDVARIIKAKRPKAFLLENVKNLKTHDKGKTYKIIISTLENLGYSTSTVLFKARDFGVPQNRERIYIVGFDKTCVNNFSEFRFPEPFHLETKLGNILQTDVDEKYTISDKLWEGHQRRKAEHKTKGNGFGYSLFNADSPYTNTLSARYYKDGSEILIEQKGKNPRKITPREAARLQGFPEEFIIPVSDTQAYKQFGNSVCVPTIHEIAKQILAVLKK*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0058	cloud	direct	high	1226	0.999	GCA_003943435.1_00286
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	278299	278988	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	58801	59490	GCA_003943435_1_1_286	GCA_003943435_1_1_286	+	391447	.	PDB:2FJR_A	Repressor-protein-CI	MFSHGRLKQRRLEIKLSQTAIANQLNVHRSAYHNWENGRNTPNQKNLTALAAILDVPVTYFESEYNIVNNYLQLSPDNQLKAEEYVEELLLSQQTSNVIPLFSVQVLSDIQLSAGLGEGFFDEFETETIYSDEEQYGYDIAAWIEGDSMEPVYKSGEVALIRSNGFDYDGAVYALSWNDSVYIKKLYRDEDGFRMVSLNKDYPEKFIPYEDEPRIVGLVVGHFMPVEGV*	common_virus_hmm	common_virus	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0059	cloud	direct	high	689	0.999	GCA_003943435.1_00287
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	278991	279218	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	59493	59720	GCA_003943435_1_1_287	GCA_003943435_1_1_287	+	391447	.	.	hypothetical protein	MKLKDILELGTYGFNPNCKVEIFCMDNFEERLENEGFDEILIPQNDDAKIYPYAFLIEDSILIAMTEVDDDINEC*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0060	cloud	direct	high	227	0.996	GCA_003943435.1_00288
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	279208	279336	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	59710	59838	GCA_003943435_1_1_288	GCA_003943435_1_1_288	+	391447	.	.	hypothetical protein	MNVKEMIYIKDERIIFTPDKFEYDITDYIGELIEELEKLKRR*	.	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0061	cloud	direct	high	128	0.992	GCA_003943435.1_00289
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	279341	280756	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	59843	61258	GCA_003943435_1_1_289	GCA_003943435_1_1_289	+	391447	.	cd01700	umuC subunit of DNA Polymerase V. umuC subunit of Pol V.   Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits.  Translesion synthesis is a process that allows the bypass of a variety of DNA lesions.  TLS polymerases lack proofreading activity and have low fidelity and low processivity.  They use damaged DNA as templates and insert nucleotides opposite the lesions.  Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	MGYIDYSIEPQSDIAFLDMKSFYASVECVDRGLHPLYTSLCVMSRADNSAGLILASSPMFKKVFGKANVGRSYDLPFDINTRKFSYQNAWKQGLEVTPKYKSFIEHWAKRTLIVPPRMDRYIEKNLEIQHIFQDYAAPDDILPYSIDEGFIDLTSSLSYFISDKSMSRKDKLDNVSAMIQRDIYSKTGIISTVGMSNSNPLLAKLALDNEAKKTATMRANWSYEDVETKVWAIPKLTDFWGIGSKTEIHLQKLGIHSIKELANFNPDILKKEFGKVGVQLWFHANGVDESNVHEPYKPKSRGLGNSQVLPRDYRTQREIEIVLAEMADQVANRLRSAHKKATVVSIHIGYSRTEMKKSINAQKKIDPANLPKTMVGHVLELFRKKYTSGAVRQIGVSYGGFVDENFTLLSLFDDVEQIEKENRLQTAIDVVREQFGFLAIQKGTVLTEGSRNIERSKLIGGHSAGGLEGLK*	mmseqs_cdd	nonviral_gene	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0062	cloud	direct	high	1415	0.999	GCA_003943435.1_00290
GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote	cenote	CDS	280753	281121	GCA_003943435.1	RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435.1_RJPP01000001.1	GCA_003943435.1|RJPP01000001.1	GCA_003943435_1_1	GCA_003943435_1_1@C20	61255	61623	GCA_003943435_1_1_290	GCA_003943435_1_1_290	+	391447	.	PF08863.10	YolD-like protein	MIDRSYLPFQSAREYQDTKMQKWMGFFLSEHTSALTDDANKVTYMSDLSLEKKLLLLSQVYAGQLNTRIHVVKKNNQVSYTGTIPSLTKDFILIKTTTGHINLKLKDIVSIELVEEVLYESA*	hhsuite_tools	hypothetical_protein	C20	61623	219499	281122	GCA_003943435.1|RJPP01000001.1@region_219500_281122@tool_cenote_CDS_0063	cloud	direct	high	368	0.997	GCA_003943435.1_00291
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	54481	54717	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	1	237	GCA_003943435_1_6_43	GCA_003943435_1_6_43	-	112326	.	.	hypothetical protein	MQEKNKTSRNIGILSIVGSLWLPLPGIILGTLAIIEANTRQKESGLDYKTERIIAIVGIVISAINWIAGILLTMNGFV*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0001	cloud	direct	high	236	0.996	GCA_003943435.1_01222
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	54801	55181	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	321	701	GCA_003943435_1_6_44	GCA_003943435_1_6_44	-	112326	.	cd00158	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	MGIWTLWAILLGMLAWMGFNYFRIRRAAKVVDNSEFEALIRQGQLIDLRDPSDFHRKHILGARNIPSQQLKSSINALRKDKPVLLYENSRGQRVTNAAIYLKKQGFNDIYILSYGLDSWTGKVKTS*	mmseqs_cdd	nonviral_gene	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0002	persistent	direct	high	380	0.997	GCA_003943435.1_01223
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	55183	55401	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	703	921	GCA_003943435_1_6_45	GCA_003943435_1_6_45	-	112326	.	pfam06014	Bacterial protein of unknown function (DUF910). This family consists of several short bacterial proteins of unknown function.	MKTLYDVQQFLKNFGIIIYMGKRLYDIEMMKIELERIYDAGLMDKLDYLEAEAVLRREHQVELKYLEDKGRN*	mmseqs_cdd	nonviral_gene	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0003	persistent	direct	high	218	0.995	GCA_003943435.1_01224
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	55820	56560	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	1340	2080	GCA_003943435_1_6_46	GCA_003943435_1_6_46	-	112326	.	PDB:4OLS_C	Endolysin	MTTANELVQFTIGLANSGMGVDKDGFAGTQCADLLTYPSKHFFGVDLWGNAADLLDSAEAAGWEVHRMPTDENPRAGAFFNMNAWFGGVNYGHCGIVIEDSDGITMRTVEQNVDGNADALIVGGPARYNNRGFEDVIGWFYPPYSDGAAPATPADVTPTSDEIELTPETGTFKVGEAAINVRRAPNLNGEIVHVYEPGESVNYDSKGSANGYRWISYIGQSGNRNYMAIGQTDEAGNRITLWGDLS*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0004	cloud	direct	high	740	0.999	GCA_003943435.1_01225
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	56653	56913	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	2173	2433	GCA_003943435_1_6_47	GCA_003943435_1_6_47	-	112326	.	PFAM:PF04531.12	Bacteriophage-holin	MNKINWTVRLKNKNFWLALVPAIALLLQAAGDIFGLKLELGVTIDKILVFINVLFALLVLVGVVNDPTTAGLGDSQKALSYDEPKK*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0005	cloud	direct	high	260	0.996	GCA_003943435.1_01226
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	56910	57317	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	2430	2837	GCA_003943435_1_6_48	GCA_003943435_1_6_48	-	112326	.	UniProtKB:A0A075EHP3_9CAUD	holin-protein-	MNHLIDFVDKLTPVLVVIIPSYFSYRSNQNSKETDKRIEALVEDLGDLKESVTNIQNIGNRNNQDLNLIQKGLQRLQRFRLQENLKKALRRSQTTQHELEELSRLYESYVELGGNGAIKLLFEKFSKLPIKEDKV*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0006	cloud	direct	high	407	0.998	GCA_003943435.1_01227
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	57330	57584	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	2850	3104	GCA_003943435_1_6_49	GCA_003943435_1_6_49	-	112326	.	.	hypothetical protein	MALEITKTTKIVGRIKIDDTVIKTMTADIDDKGVTTPNDWVDNAEAYAANRHEVRKQEQAFQNAVYATEDAIIAELEAKGAEKK*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0007	shell	direct	high	254	0.996	GCA_003943435.1_01228
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	57587	57778	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	3107	3298	GCA_003943435_1_6_50	GCA_003943435_1_6_50	-	112326	.	.	hypothetical protein	MDNKFYNLMLAGYKERLDNSTLGEIELKARLILEQEKNAELQAKVEELEALLAKETEPAKEGE*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0008	shell	direct	high	191	0.995	GCA_003943435.1_01229
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	57788	61954	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	3308	7474	GCA_003943435_1_6_51	GCA_003943435_1_6_51	-	112326	.	PDB:3GUD_A	Neck-appendage-protein	MKNNVRIAIRDSTDTHVVGFFDNQNGIKYHAADLTRFLKGSCSYLVIKYRSKDIAKVKSGCRLAFRFKGKDYWMTIKSIKKTGYQMEITAYSLSLEANEEKRGAYKASRAMSIREYVDVFDPEHALEVGINEIADKSIKLEWSGTDTVLARLYSIANSFGAELEFVTELNRDYSLKRHILNIYRAGNLGKVKTGLPIRVGKDLKVINYSDDINDIKTAIRGSGKDGLTIAGLDKKIYDDKGNLIFYSQGNTIYAPQSRDQFPSVTKKTDDGWIILENGETEHASKEALFGYLLSELKKRCVPKISYSTEGKVNGEIGDTLTLIDSEHYAPPLYVQARISEQTESLLGAKTDKTTLTNFERKSSQIASELLKRVEELAEEAAPYVIKLATDKGVVFKNNQGESTVFPTLKKGNKTVECTWKWLIDNEDFGQAPNHKVTAAGMRESLTLTAIALVKGQEVAREQLTFTNVNDGQNGAKGDPGPQGPKGSTGATGATGATGARGPQGERGPQGAVGPQGPKGERGDPADTAELKKAVTAAQTQLTDVKNNLEGVRANLTQAQSQLSTNIAQIRSDVGAIRTQQTVYEQSNTQNLARITGKLGDKASKAEVEQTAAGIREEIASQVVGGRNLLKGSKGPFKPNRNPTNFDNNVLYHNETSVYMVNGQRYRISAKTDGTFTSHHDGLKESDNVVLWIMDKTVSNYQIVSDAKTGTTGTEFVWNRPTGTYHLRVNTYHKDTQKLKSVWEVKVEQGSFKTDWSPAPEDTEGLITEAKATFERTAQGLRTDLSAVQAYVSTDGTRAEALLSHSREETARQLTAERKLIEAGYVAKATYAEDVRGLTRRFEELTVGGANLLAYANFNSEGYYQNGLKRDRNYVYSNLIEIKSTDYILQVWELEPQGKRLWVGLQLFDEQRNPVANGYSTFWFNGYLKRTIKPTQNARYLAISFENLILDKDKAKFKLETGTIPTDWSPAPEDTTAYADTKLAEYKQDIDGQLASVQAALNTANGSLTSFNTWKQSAQETLNKVGKVETGLNETKTSFAEFKRTAEGQLSTITQQVAGKVSQTELTQRANQITQAVQELSNSVLRKSQVKINEGGIISSVEKTINGQTLASMIAQRSENVEIIARLLKVKGDMIVNGSITADKLNIVGELSALSANLGRVRSGEIVNEYRTNSTNGEVVIGNNVKITNYNRSGPRIHIPKEEIMLLPNGLLMNAYDNRDRVSHTMRVSPEVMEFQKINYAQAQGGTGSWSLGYSNSYSMLSIDVALQKIRLQATSNLMWGVSATFVRIGNLVTISVTRIITNINQIVENARASERIPNGFRPISQAHLTLTGNVNATIDATCIVHLETDGSIRFTNNKTGNHVWSGTVTYTTVDDFPIVGNIPNGKLI*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0009	cloud	direct	high	4166	1.0	GCA_003943435.1_01230
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	61954	63348	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	7474	8868	GCA_003943435_1_6_52	GCA_003943435_1_6_52	-	112326	.	PDB:5LY8_A	Distal-Tail-protein	MSGAEFVKTRKKLKKISVPFYVAYDSVADYDALQTALNVSEPKELTFSHLPDRVFYAIPGGDLNFKEIRFNGKGTINFNIADGLGHAKNPKRFEFTKNAQGIWEAIINNTGSEPVPIDYKIKLKKESGFVAIVSQYGAIQYGKFEESDFVQEKKNVTLASNQGGDFANWQNGTVFYENQGKKAVTTMSADTAFNGRLGLLPRGFNNTGNNPFFGAIKEFNLSVGATEWYIWARAWFETGLMGQTGAWCLAVVDNANRFIAGMAIEKHDRVGNRASVYFLLGDGKGGSHIKHKIDFTPSFWVTDNPYGTEARNQNRNMFDLRKEGDKVTFFWYGQYFSYFESGIKNVEASKVQFFCGQINGRNTNDQIVTHQYLNDFSFFKLNVPFWRDVPNRYPAHSELFIDASGEINPDEPGRLYVNGLLAPDDEILGSQFFLAPPGETKVQLLVSSFSEVASAYAEIEEAWT*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0010	cloud	direct	high	1394	0.999	GCA_003943435.1_01231
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	63463	66429	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	8983	11949	GCA_003943435_1_6_53	GCA_003943435_1_6_53	-	112326	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATEIAQAYVQLIPSARGITGKIQAILNPEASAAGQSAGQSLGSSLVSVATKAIAAAGIGKAFSAAIHEGAALQQSLGGVETLFKGSADTVKRYAAEAYKTTGLSANAYMENVTGFSASLLQSLGGDTAKAADVANMAMVDMSDNANKMGTDMGRIQDAYQGFAKQNYTMLDNLKLGYGGTKSEMERLLADAEKLTGVKYDINNLSDVYNAIHAIQENLDITGTTAKEAASTFSGSFSAMKAAAQNVLGQLALGQNILPALHALFDTTKTFLFDNFIPMIGNVFSGLGLLLTEGISKIASELFGDAFGSAVYDQLSRVTGIFQTFFDMIFGSLNKQDNIDILKVLGFSDDAAKQIVNIADNIRVTFENIGATIGNIAGIVSSFIGELLGVRDGKQEVNLLGTAFEILTGFIKEVSSILKDVTKFFKDNQLAADLLKTSVVALGVGLPVAKIATFVQGLGGIPGILAIAKTAISGFATSAIAAISSIPLIGWIAAAIAALTWFFTQTETGRQIWAAFVDWIKVAWQGIAEFFSGLWSGIAEGANNLWSSVSEAWSSAVENVKNLWNGIVVFFDALWLTIQTAASIAWTQFTTTIMSIVQPFIDGFLNLWNGVSNGISQIFEGIKMIFQGAWEFIKSIFLGAILVIIDLVTGNFTQLGADLGLIWEGIKNGVSLVWEGIKAIFMGLVDAIVGFGKAAFENFSAALSAIWEFIKSAASAAWEWVKSTVTNLITGLVQGAQNIWNGFMNFLSSLWESIKSTAVNGWNALKSGVISIINGLIQGAQNAWNTLQQGVTNVVNSVTNIFKGLANINLWDAGRAILDGFLGGLKSAWGSVTDFVGGIAGWIRDHKGPIEYDRKLLIPAGNAIMGGLDKSLKEKFKEVKKTVSGMAGSIADSFGDEILAPDLGVLGNNEVQVALTSSKLLDQILDPDHNRDKESTLLETIVKLANRPVIVSQQVDTREVSQILAEPIAEEQEKRQTILKAVDGLGWT*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0011	cloud	direct	high	2966	1.0	GCA_003943435.1_01232
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	66429	66803	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	11949	12323	GCA_003943435_1_6_54	GCA_003943435_1_6_54	-	112326	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIDLDEDALICDLAETYGIYDYRQLPAQQVAVFAFGLKEDSRIKMALSNQKVPFETLLMASTLDRLSTLLWFKTKDGQKGANRPTMIAQKLIGEEKERDEMVFSSGEEFEAYRQRILAEVGGEK*	mmseqs_cdd	nonviral_gene	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0012	cloud	direct	high	374	0.997	GCA_003943435.1_01233
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	66818	67123	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	12338	12643	GCA_003943435_1_6_55	GCA_003943435_1_6_55	-	112326	.	.	hypothetical protein	MVKRKRNKRNHGAQGKTFKGKTSTGFAFEITQERLDNYELLEAVAEVDKNPAVLPTVINLMLGDKAQDLKDHVRTEAGMVPTGKLMQEVEEIFKSRTHLKK*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0013	cloud	direct	high	305	0.997	GCA_003943435.1_01234
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	67127	67678	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	12647	13198	GCA_003943435_1_6_56	GCA_003943435_1_6_56	-	112326	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MALEANVTTAKPKVGGAVHSAPLGAKLPVDATSKLDVAFKSLGFISEDGVTNNNSPESEDIKAWGGTIVNSSQTEKKDTFVYTLIEGLNIDVLKEVYGAENVSGDLATGITIKANSKELENHCLAIEMILKNGALKRIVIPSGKVTEIGEITYKDGEVVGYQTTITAFPDDTGNTHYKYIKGA*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0014	cloud	direct	high	551	0.998	GCA_003943435.1_01235
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	67692	68027	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	13212	13547	GCA_003943435_1_6_57	GCA_003943435_1_6_57	-	112326	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGHLDVPSFFEYEAEAPNSFVIIQKTGGKERNHSGSATFAFQSYGPTMQKAAELNVKVKQAVKGLIELDSISGVHLNSDYNFTDTETKRYRYQAVFDINYY*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0015	cloud	direct	high	335	0.997	GCA_003943435.1_01236
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	68028	68264	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	13548	13784	GCA_003943435_1_6_58	GCA_003943435_1_6_58	-	112326	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MASMKVKLNGAGVGALLKSREIQNLLNQEATKIRSRCGPGYEQDSYVGKTRANAMVYPKTYQAKKDNLLNNTLLKAVR*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0016	cloud	direct	high	236	0.996	GCA_003943435.1_01237
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	68257	68595	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	13777	14115	GCA_003943435_1_6_59	GCA_003943435_1_6_59	-	112326	.	PFAM:PF10665.8	Minor-capsid-protein	MGRIKGITVILIDKVKTGQDDFGHSVFEDREIEVENVLVQPTSTDDKVSQLNLTGKVAVYTLAIPKGDTHNWEDREVLFFGQRWRTFGIPTEGIESLIPLDWNKKVTVERYG*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0017	cloud	direct	high	338	0.997	GCA_003943435.1_01238
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	68582	68977	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	14102	14497	GCA_003943435_1_6_60	GCA_003943435_1_6_60	-	112326	.	PFAM:PF09355.9	head-to-tail-adaptor	MGDFATVEDLETLWRLLKSDERKRAEALLKIVSDSLRVEAKKIGKDLDVLVAEDSSFASVVKSVTVDVVARTLMTSTEQEPMTQFAESALGYSVSGSYLVPGGGLFIKDSELKRLGLKKQRFGVMEIYGTD*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0018	cloud	direct	high	395	0.997	GCA_003943435.1_01239
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	68983	69213	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	14503	14733	GCA_003943435_1_6_61	GCA_003943435_1_6_61	-	112326	.	PFAM:PF08198.10	Arc-like-repressor	MEYINKETLVTIETDCKLLGDWVPAAEFTKSQEGQADDSENWTVPELKSKLDELGVEYSDKAKKAELLALLEAHKE*	phrogs_hmm	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0019	cloud	direct	high	230	0.996	GCA_003943435.1_01240
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	69215	70105	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	14735	15625	GCA_003943435_1_6_62	GCA_003943435_1_6_62	-	112326	.	PDB:3JB5_B	Major-Capsid-protein	MPTLQTGDLFPVETVQDIFSKVKGHSTLAKLTTQEPIPFSGTETFVFNLEGNAEIVGEGSPSNAGSATMKPKVIKPVLVTYQARVSEEFVNCSEEKQLSYLKSFIDGLSKKVAQAIDIASFHGLEPKSMTDASFKSTNSFDGLITGNVVTYEADKIDENIDTAVATITANDCEVNGIALSPAAGAALGKIKVNGVVQYPEYRFGQNPGSFYGMKSDINKTLTTVASSAKKDHVIVGDFENAVKWGYAEEIPLEIIKYGDPDGAGRDLKRYREVCLRTQVYVGWGILDEQAFARVEA*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0020	cloud	direct	high	890	0.999	GCA_003943435.1_01241
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	70110	70574	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	15630	16094	GCA_003943435_1_6_63	GCA_003943435_1_6_63	-	112326	.	PDB:6B0X_d	Major-Capsid-protein	MRMSEFKPITTQEEFDAAIKARLSREKEKYADYDQLKSRVEELEKENVGLQSTIEASNKSKADADKQLEDLQNQIAGYETASLRTRVALQHGLPYDLADRLQGTDEESFKADAERLAGFMKKSQPTYPVGTNEPSSIDEKDAALKGMLHKMRGE*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0021	cloud	direct	moderate	459	0.987	GCA_003943435.1_01242
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	70649	72061	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	16169	17581	GCA_003943435_1_6_64	GCA_003943435_1_6_64	-	112326	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAIELYERTGLSCYAWQKNLLLPMMAIDKNGLWVHQKFGYSIPRRNGKSEILYILEIWGLHKGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEDFNSIRAKGQERIELYSTGGVVQFRTRTSNGGLGEGFDMLIIDEAQEYTTEQESALKYTVTDSANPITIMCGTPPTPVSSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAELGEDKLDHNIQRLGFWPTYNQKSAISETEWNELKVDDVPELSGKLSVGIKYGQDGTNVALSIAARTKDGRFFIETIDCQSVRNGNEWMVAFLRQADVAQIVIDGASGQKILDEELKDYRIKNVILPTVKEIIVANALWEQGIYQKTICHAGQPSLSKVATNCDKRNIGSNGGFGYRSHFDDMDISLMDSALLAHWACATTKPKKKQKISY*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0022	cloud	direct	high	1412	0.999	GCA_003943435.1_01243
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	72116	72346	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	17636	17866	GCA_003943435_1_6_65	GCA_003943435_1_6_65	-	112326	.	.	hypothetical protein	MGNTIDFSERKSSIERGASVKEILVENFEASPNYSSVLVISLDKNGEVNLGYSWESSLQALGMLEVAKNYILNDIN*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0023	cloud	direct	high	230	0.996	GCA_003943435.1_01244
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	72398	72589	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	17918	18109	GCA_003943435_1_6_66	GCA_003943435_1_6_66	-	112326	.	4A54_A	EDC3, MRNA DECAPPING COMPLEX SUBUNIT	MELRKFNNKVVRITDIDGQTFEGICLYEDKDVYDEEYDGLSVKSGTRWTKLFEDEIKEVEIIA*	hhsuite_tools	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0024	cloud	direct	high	191	0.995	GCA_003943435.1_01245
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	72589	73815	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	18109	19335	GCA_003943435_1_6_67	GCA_003943435_1_6_67	-	112326	.	PFAM:PF06152.10	minor-head-protein	MVKDIVPELLTKIQTEFEEARLDSEVLKSLLSKLESKSAGYLDANDYAIELGEILSKVLRSSVSPSNLPDGKMYYNIAKRLLTETLGRNFELISGYAQQVQKNLNEEAKIGLRVQVPELNQDRITGLVNRISSEAEFSQIAWILKEPIVNFSQSIIDDSIQKNAEFQKKVGLAPVIERHSTGHCCDWCQSLVGKYLYGEEPLGFYRRHQRCQCTIDYHPKNGKQQNSWSKKWSKESADVLERRKQQNIDVRDNNRKVDIREYKKIVEILGPQNAPISLAQFQELKYNDSERYERLRDVVYIQEKFKNGTWLDKINPEKQARHIQSTSLTGKSYFYDHVDVNALYDKYKMTGFLETSRKGAQTSNEKVDLFEDRPLGIDVYTGKPVNAMTIKYSKTGAHLIPTYYERGD*	phrogs_hmm	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0025	cloud	direct	high	1226	0.999	GCA_003943435.1_01246
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	73763	75076	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	19283	20596	GCA_003943435_1_6_68	GCA_003943435_1_6_68	-	112326	.	PDB:2JES_G	Portal-Protein	MEIRGIDYLRRKLASCRSRVNLRYKHYAMQYQEVPIGITIPPNVRAQYRATLGWTAKGVDSLADRLVFREFGDDVFNVTKIFDRNNPDIFFDSAILAALIGSCCFIYISKGEDDEVRLQVIEASNATGVIDPITGLLVEGYAVLARDDYGQATLEAYFEPNATHFIPKDGRPYSISNPTNIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILGLDPDAEPLEKWQATVSSLLTISASDNGEKPNVGQFSTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGFLNVAYVATCLRDDFQYARSQFVRTKVKWEPLFEADANMLTMIGDGAIKLNQAVPGYVDGETIRDLTGIKGAENPVPAPIEKEVNDGQGYRAGVVDENSDGI*	hallmark_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0026	cloud	direct	high	1313	0.999	GCA_003943435.1_01247
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	75309	75647	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	20829	21167	GCA_003943435_1_6_69	GCA_003943435_1_6_69	-	112326	.	COG1403	5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms]. 	MNLPRPDRNGPHRVAFEKNKNIILKTRNTCGICGLAVDKSLKYPHPLSPVIDHIIPINRNGHPSDINNLQLAHWQCNRQKSDKLYADSRAESLKVVGNRNLPQSRDWTKYRA*	mmseqs_cdd	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0027	cloud	direct	high	338	0.997	GCA_003943435.1_01248
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	75869	76435	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	21389	21955	GCA_003943435_1_6_70	GCA_003943435_1_6_70	-	112326	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKKVEPIRELDDIERMKDFLKSKSERNYVLIMCGLYSGMRISDIIPLQVKHVMSDRIEVTEKKTGKVKRFAINPELRKALNHYIKTNELQDYDYLFPSKKKVRTDGVRIAHIGRVAAYQILKQAAEHIGLKNIGTHSMRKSFGYHHYRRNQNVAILMELFNHSSPDITLDYIGIKQDELDDSMMNFSY*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0028	cloud	direct	high	566	0.998	GCA_003943435.1_01249
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	76548	76973	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	22068	22493	GCA_003943435_1_6_71	GCA_003943435_1_6_71	-	112326	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MPFFPEINEAKTKENAKKILKGYPRWRRVANDKNGQKVTTTYSFMPRNPGSDTTSQVEKLAIRKVDAELELDAIEQAVSELHDPYYRRIIYEKYLVWHRKKDETIYNELAISESSYYEILDKALLAFAELYRNGEQVEIME*	mmseqs_cdd	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0029	cloud	direct	high	425	0.998	GCA_003943435.1_01250
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	77005	77199	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	22525	22719	GCA_003943435_1_6_72	GCA_003943435_1_6_72	-	112326	.	.	hypothetical protein	MNKRIKKKAKQALLREQEKLNQELAKLSPEELARAVKQVFKSMARTLASIFEGLAAFFKGFDKP*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0030	cloud	direct	high	194	0.995	GCA_003943435.1_01251
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	77171	77317	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	22691	22837	GCA_003943435_1_6_73	GCA_003943435_1_6_73	-	112326	.	.	hypothetical protein	MNGYEFMAQHPYLTSFIAIMIAITVISTVESIAKIWRKPDEQKNQEES*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0031	cloud	direct	high	146	0.993	GCA_003943435.1_01252
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	77314	77505	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	22834	23025	GCA_003943435_1_6_74	GCA_003943435_1_6_74	-	112326	.	.	hypothetical protein	MRIMIDGEFQAFLTFMFHFIMIDWIWKFLEINIAGKENGNLPDSILLVLLCLYITWILNRRTK*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0032	cloud	direct	high	191	0.995	GCA_003943435.1_01253
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	77620	78006	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	23140	23526	GCA_003943435_1_6_75	GCA_003943435_1_6_75	-	112326	.	.	hypothetical protein	MTKLIGFGRCLGKTTMAILESHATGSRILVANQKMVENTFRMAKELGYTIPYPICVNDLVRTPHAYSSEEHFIIDNVEMVLQEMLYNKIDTITFDNRTIDPEDRYREEIRTLKQEVDACYKEKRKTRK*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0033	cloud	direct	high	386	0.997	GCA_003943435.1_01254
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	78019	78210	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	23539	23730	GCA_003943435_1_6_76	GCA_003943435_1_6_76	-	112326	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MKEKTYEDNQQGQRVYVTEVVADSFQLLESRNKSANHSSMDEQMPPDFGNNNPMDISDDDLPF*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0034	persistent	direct	high	191	0.995	GCA_003943435.1_01255
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	78221	78652	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	23741	24172	GCA_003943435_1_6_77	GCA_003943435_1_6_77	-	112326	.	.	hypothetical protein	MTKTIEIPDWCSMWGRKDERYGSLEELKELLLYKRIVKWDKDFLLLEDGTKVTIEMSESDCCASAGGEFKNVTLDAVITDVKIGEPTKFDNGDGTTCENTVTIYHNQNPIASAECEADDGNGGYYYSVGSLVIGKIHFPVVEA*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0035	cloud	direct	high	431	0.998	GCA_003943435.1_01256
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	78698	78976	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	24218	24496	GCA_003943435_1_6_78	GCA_003943435_1_6_78	-	112326	.	.	hypothetical protein	MKKLGIILGTVFVIVVSPFVVQYGWNEIITTIVPVGKITVWQALGMDALLSFIWPVLSSKKESEEDYSYAVKSSISKIIVCAFLIWLASLFI*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0036	cloud	direct	high	278	0.996	GCA_003943435.1_01257
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	78973	79281	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	24493	24801	GCA_003943435_1_6_79	GCA_003943435_1_6_79	-	112326	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MREHSIYIFSIVVLLAILMAAIIKINRINERVEQLEARKLITIHRADNAGAEMHGRITDKEVIDGRYTVTAGPYGKFLVTKEQYDNLQVGDEIPDYLRGTGR*	mmseqs_cdd	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0037	cloud	direct	high	308	0.997	GCA_003943435.1_01258
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	79278	79769	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	24798	25289	GCA_003943435_1_6_80	GCA_003943435_1_6_80	-	112326	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MNSITLEEKVEQWFVERNLHEANPVKQFEKLMEEAGELFEGIAKGKNELIYDALGDIQVVLIGLEQQIRNGAEIEATAQELELLLMVSSLGNLAQKLYKHVFHKETKQPLIKPDLMLLHSAIHALALYNETSADDCLALAYQTIKHRKGKMIDGVFVKEEDLT*	phrogs_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0038	cloud	direct	high	491	0.998	GCA_003943435.1_01259
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	79762	80559	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	25282	26079	GCA_003943435_1_6_81	GCA_003943435_1_6_81	-	112326	.	PDB:4U7P_B	Adenine-specific-DNA-methyltransferase	MIIREMVVWALFDSGNGSYFKGAKVLNRSGGANIDIYPIGKDVENKNNHFINLDLADYGRLFGDNTLFGELDKLPKPDLIIASPPCESWSNASAMENGNACWKRNDVSDCLFAPQVRPSPFTIRGNQDYESAYINYQYDRQFLKRINGELTAFNTIEIIRKYRPQFWVIENPAADRLWPYIEDIIGFKIPYKNLARYNNYDYPLQKRTIFGSNIELNLKNKIIKQDIEWKNFSKSYNERSNIPKKLVIEIFEKVYKEFSKEKKDE*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0039	cloud	direct	high	797	0.999	GCA_003943435.1_01260
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	80556	81374	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	26076	26894	GCA_003943435_1_6_82	GCA_003943435_1_6_82	-	112326	.	PDB:4M4W_K	Replicative-helicase	MDFKNFEARQVLDETCEVHGCQLWLTKMPIKGKLEEIKQCPECTKAAISLFEKRLIETSEVQSKLADTYAVFERDSIISDKLRDKTLRNYEITSDIDQEAVNFVKRLEHSYAKGETGNAIITGPSGVGKSHLTYGLAAYLNEQFKSYDEPKSVLFVSVVRLFSLIKESFKVDNGYSESKMIKLLTDVDFLFLDDLGKESRKADARSNEWAHRVLYEILDNRSNTIINTNLTSEEIKALYADDFGNGALSSRIFEGATGRCFVYPSGMKDRRY*	rep_hall_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0040	cloud	direct	high	818	0.999	GCA_003943435.1_01261
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	81374	82120	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	26894	27640	GCA_003943435_1_6_83	GCA_003943435_1_6_83	-	112326	.	PFAM:PF09681.9	phage-replisome-organiser	MAQRRMFSRKITETDRFLEMPLSSQALYFHLNMGADDEGFIDKAKTIQRTIGASDDDMKLLIAKGFLIPFDSGVVVIRHWRIHNYIQSDRFQSTLYQSEKAQLEYDKSKTASLKPIGNCIQNVSETETQVRLSKGSLDEDSLTTYPTVSDNEEEDIPYKEIISYLNEKANRNYRPNIQKNKTLIKARWSEGFRLDDFKHVIDTTVKDWSGTKYEKYLRPETLFGSKFEGYLNQAPRTKKEIIDERLGF*	rep_hall_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0041	cloud	direct	high	746	0.999	GCA_003943435.1_01262
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	82121	83449	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	27641	28969	GCA_003943435_1_6_84	GCA_003943435_1_6_84	-	112326	.	PDB:3BGW_F	DNAB-Like-Replicative-Helicase	MDDLKILPHDIQAEQSVLGSIFINPDKMIEVIELLKPDDFYRPAHKILFKAMLGLFDSGEAIDIVTVKSELEASNELDLVGNVSYLAEIINAVPTSSNAEHYAKIVAKKSRLRSIITNLSDSIGNAYDEDMDIDEIIAKAEKSLLEVSQSSNKGSFRPIHDVLLENHSKIEERSNNTSEITGIESGFSDFDKLTTGLHEDNLIILAARPAMGKTAFALNIAQNVATKANQPVAIFSLEMGAESLVERMLSAEGAIPNHHIRTGSLSTDEWERLVYAQSRLAEAPIFIDDSAGIRISDIRARARRLAQETSGLSLIVIDYLQLITGRKTDNRQQEVSEISKQLKIIAKELKVPVIALSQLSRSVEQRQDKRPIMSDLRDSGSIEQDADIVAFLYRDAYYQDKTDDQPESNLTELLIKKNRHGGLGTVKLYFHKEYTKFSSVEE*	rep_hall_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0042	cloud	direct	high	1328	0.999	GCA_003943435.1_01263
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	83449	83676	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	28969	29196	GCA_003943435_1_6_85	GCA_003943435_1_6_85	-	112326	.	.	hypothetical protein	MNNLQIIAVGTLFSVTLIESILMNIRLKKALKRKLTTSEISPQRSYQKGFVDPKTGRRVDIDPMTRKETFVDRGR*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0043	cloud	direct	high	227	0.996	GCA_003943435.1_01264
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	83755	84012	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	29275	29532	GCA_003943435_1_6_86	GCA_003943435_1_6_86	-	112326	.	PFAM:PF09035.9	Excisionase	MDNVLVSLSDWIKSIIKDTITRLVEIEKDSDHYPELMDVGTTCDFLGIKYDTFSDNYRYLKGFPKELPGKKWSKRAIKEWLSNQI*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0044	cloud	direct	high	257	0.996	GCA_003943435.1_01265
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	84027	84740	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	29547	30260	GCA_003943435_1_6_87	GCA_003943435_1_6_87	-	112326	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNEIFNFHGQEVRTLTIDDEPWFVGKDVADILGYAKPLDAISRHVDEDDSVKYGLTDNLGRTQNTIIINESGLYSLILSSKMPQAKEFKRWVTSEVLPAIRKQGGFIREDLDEDAFIALFTGQKKLREQQATMLEDIDYLKSEQPIHPSYAQSLLKKRKARVVACLGGIDSPAYADKIFAQSVFRQAEIDFKDHFNISRYDLLPKKFAEAALAYWMTWEPSTNTKMKIMKLNSFDEV*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0045	cloud	direct	high	713	0.999	GCA_003943435.1_01266
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	84758	84961	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	30278	30481	GCA_003943435_1_6_88	GCA_003943435_1_6_88	-	112326	.	PFAM:PF10078.8	transcriptional-repressor	MSKELKKIKAKIKTRLIELDMTQTELAKQVPVASSVISELLRYGKGSDTVKEKVSEVLGIENPWAKI*	phrogs_hmm	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0046	cloud	direct	high	203	0.995	GCA_003943435.1_01267
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	85014	85544	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	30534	31064	GCA_003943435_1_6_89	GCA_003943435_1_6_89	+	112326	.	.	hypothetical protein	MLSDIINIISIIASTSVSIISIYYSHKAVKIASEANKLTAEVTEEANRPVIVAYLDTIEINDFHKYLVIKNFGNTSATILDLKFSKDIDTLGFNMSSLVGYTIAPSQKFMHILDNSFKETIVVNIIYQNSAGKTYDEVCLVKTDATSKLLWVGSSDTDKTRKLLKNSAEAIIKSLK*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0047	cloud	direct	high	530	0.998	GCA_003943435.1_01268
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	85545	85706	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	31065	31226	GCA_003943435_1_6_90	GCA_003943435_1_6_90	-	112326	.	.	hypothetical protein	MEMEKEYLTEEDAAKIKKELLKVLRSHDLNSGLAKAVLTDTIETIENYSQLPE*	.	hypothetical_protein	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0048	cloud	direct	high	161	0.994	GCA_003943435.1_01269
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	85995	86345	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	31515	31865	GCA_003943435_1_6_91	GCA_003943435_1_6_91	+	112326	.	PDB:1PRA_A	Repressor-protein	MFFTFEKIKELADKQGISLNKLEENLGFSRNTIYNMKKSTPNIERVSKIADYFNVSTDYLLGRTDNPIIAGEKASKIEIDLKKDAAESFFYDGHELNDEDIDLISSILEARMRNRK*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0049	cloud	direct	high	350	0.997	GCA_003943435.1_01270
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	86355	86738	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	31875	32258	GCA_003943435_1_6_92	GCA_003943435_1_6_92	+	112326	.	PDB:3DTE_A	IrrE-protein	MTTPEQVCSEQGIDLVYFDGRDSQNKGIYNQHHNIIAVDSYLDDIEKKKVIYHEIGHKEHDPGQYQRRREEYELQADRNMIHYLLKEELETMDDTANFNYIHFMEKYNLKSITNEIMVKEEYLALLN*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0050	cloud	direct	high	383	0.997	GCA_003943435.1_01271
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	86754	87665	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	32274	33185	GCA_003943435_1_6_93	GCA_003943435_1_6_93	+	112326	.	pfam08797	HIRAN domain. The HIRAN domain (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. The HIRAN domain is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this domain functions as a DNA-binding domain that probably recognizes features associated with damaged DNA or stalled replication forks	MKIGMRSPSLKKSLKARTTSKWKRQTKKALIPGYGQKGIGWLKNPKKAMYNKIYHKTTFGLSDLLKPSKKRKKKVVTKNQQSILTSNGKKYTAKDHKEAGIVLMVLGAIFLFLFPPIGFFLFITGFISYIIGRLTIKREKKKKIENYSPQIDTIVFHDNFLLMGTNYHKEEAEIAADFLSKGVHYFGKDNKSLKSYMLETYKPVYKYNKLKTVDVQLLPEPSNPHDKNAVKVLVNNIFVGYLPAVIASQISSYIANPNYRYDAILTGRGGPYKTLNIETERVVSYEKELTYYLDLTIWRLAKK*	mmseqs_cdd	nonviral_gene	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0051	cloud	direct	high	911	0.999	GCA_003943435.1_01272
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	87840	88988	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	33360	34508	GCA_003943435_1_6_94	GCA_003943435_1_6_94	+	112326	.	PDB:1XO0_A	Recombinase	MKYIKTKYPNIYYYETAKGKRYYVRRSFFFRGKKREKSKSGFTTLPQARAALVELEQQIQDQELGINTNITLDQYWDIYSEKRLSTGRWNDTSYYLNDNLYKNHVKPKFGSTLLKNLDRNEYELFIAEKLKNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAANKKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDISQNDSGRAILHLRDSRSNQTLKGKGGLKTRESERYVCLDDIGTELVYYLIDEAAKIKRKLGIIKDQQKDYITINEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVYMTDRYNQVEDELAEATTDLFLNHIR*	common_virus_hmm	common_virus	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0052	cloud	direct	high	1148	0.999	GCA_003943435.1_01273
GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote	cenote	CDS	89419	89934	GCA_003943435.1	RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435.1_RJPP01000006.1	GCA_003943435.1|RJPP01000006.1	GCA_003943435_1_6	GCA_003943435_1_6@C6	34939	35454	GCA_003943435_1_6_95	GCA_003943435_1_6_95	-	112326	.	cd01043	DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	MTQVKHGAAADVATFTNQNSLPKTKAVLNQVVSDLYTARIALHQVHWYMRGAGFMVWHPKMDEYMDTIDETLDEVSERLITLGGKPYSTLTEFIQHSKIEEKAGEFSKNVEESLERVIEIFRYLTDLYQEALDVTDEEGDDVTNDIFVGAKADLEKTIWMLTAELGQAPGL*	mmseqs_cdd	nonviral_gene	C6	35454	54481	89935	GCA_003943435.1|RJPP01000006.1@region_54482_89935@tool_cenote_CDS_0053	persistent	direct	high	515	0.998	GCA_003943435.1_01275