core_seqid core_source core_type core_start core_end core_bax_acc core_contig_acc core_bax_acc|contig_acc core_bax_acc_contig_acc cenote_input_name cenote_contig cenote_phage_region_id cenote_gene_start cenote_gene_stop cenote_gene_name original_cenote_gene_name cenote_gene_orient cenote_contig_length cenote_dtr_seq cenote_evidence_accession cenote_evidence_description cenote_translation cenote_Evidence_source cenote_vscore_category cenote_chunk_name cenote_chunk_length cenote_chunk_start cenote_chunk_stop UNI_lookup_ID pangenome_partition pangenome_method pangenome_confidence pangenome_overlap_length pangenome_overlap_fraction pangenome_matching_locus_tag GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 223685 224062 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 1 378 GCA_003943465_1_2_235 GCA_003943465_1_2_235 - 395892 . . hypothetical protein MKKYLSWMMACTFLLVYVWLMNTLSLWGTENIVVFSFFLLIPLLPFLAPFLGILMFFNNKKLIITGYLLSLTAGIYLVNAIKSYPIRIYMRGEMTQEEYLSLILSLVGYLFISTLFFIFRMKKLK* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0001 shell direct high 377 0.997 GCA_003943465.1_00719 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 224373 224738 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 689 1054 GCA_003943465_1_2_236 GCA_003943465_1_2_236 - 395892 . PF10852.8 Protein of unknown function (DUF2651) MKVHKKEIFFLLPLFFFYFVFYILLRYGPMDSILSKGLVVGNVLIYSPLATLLVSLLYAALYGFSLRFSFLVALLFFLTIFTFGEWIPLYHAAYFLFSLAGNGLGHVIYRFTRKNSRAENQ* hhsuite_tools hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0002 persistent direct high 365 0.997 GCA_003943465.1_00720 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 224775 226088 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 1091 2404 GCA_003943465_1_2_237 GCA_003943465_1_2_237 - 395892 . cd03817 UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (EC 2.4.1.337, UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol. MRIGLFTDTYFPQVSGVATSIRTLKTELEKLGHKVFIFTTTDKDVNRYEDWQIIRIPSVPFFAFKDRRVAYRGFSNALEIARQYQLDIIHTQTEFSLGLLGIWIAKELRIPVVHTYHTQYEDYVHYLAKGMVIRPSMVKYIVRGFMSDLDGVICPSEIVYDLLVGYKIKAEKRVIPTGIDLAKFDRPELSREDIKKLRFKLGIAEDEVMLLSLSRISYEKNIQAIVEALPMVLEENAKVKLVIVGDGPYAEDLKALVTQLHIKDSVIFTGMIAPSDTALYYKAADFFISASTSETQGLTYLESLASGTPIIAHGNPYLDNVISDKAFGTLYYESRDLAGAILEAILATPDMDEKKLADKLYEISAENFGRRIYEFYLDLTISKDFHNDLNPEETMAKRLAKTIVYLPGKIMSLPVNSSTRMIKASKKQIKNIRKYWE* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0003 persistent direct high 1313 0.999 GCA_003943465.1_00721 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 226090 227088 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 2406 3404 GCA_003943465_1_2_238 GCA_003943465_1_2_238 - 395892 . CDD:cd03814 GT1-family-of-glycosyltransferase MKVLLYLEGKSVLEKSGIGRALQHQMHALDLAGIPYTTDVLGDYDVVHINTYGPRSLLLLHAAKRRGKKVIMHGHSTKEDFENSFIGSNLFAPLFGKYLAHMYKMADFIITPSEYSKKLIESYGVTTPIMAVSNGIDLSKYKKDERKEEVFKKHFQIAEGQKVVICAGLYFRRKGIEDFVEVARRMPDVRFIWLGSINLWLIPRKIRDLVLYNHPENVEFPGYFKGAVFQGAMSGSDAFFFPSYEETEGIVVLEALASGQHVVLRDIPVYNGWIDEDSAELCHNVDEFVESLRKVLDGKVDKREAGYRVAESRSIDDVALKLVKAYQTVLEM* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0004 persistent direct high 998 0.999 GCA_003943465.1_00722 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 227230 230901 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 3546 7217 GCA_003943465_1_2_239 GCA_003943465_1_2_239 - 395892 . PDB:1UAA_B Replicase MRRIPFLKEQDILVKQAEEAASDKPQKRTPEQIQAIYSSGQNILVSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFTVKAAGELKERLEKELSLVLKETSDQELRQHLAQQLAEIANADIGTMDAFTQKVVNKYGYLLGLAPHFRILQSASEQLILQNEVFDQLFDTYYESDQQELFSRLVKNFTGKRKDISGFRQQIYSIYSFLQSTSNPRKWLEETFLLGYETSDFEAERERILSGSRQSLLDLEDFFQSHLAHEGQAFAGAKYQENVQAALDILAELTEQTGSEQLLDLIQRFLELAKTSNHQAFTARVGKNADELKKELAQIYNEARKPLIERIKELDVRLYHLNFMEQHQSEALPQLDLLRDFVRDFSQAYLQRKVAENAFEFGDISHFAIEILENYPEVRRFYQDKYHEVMVDEYQDTNHTQERMLELLARGNNRFMVGDIKQSIYRFRQADPQIFNDKFKLYQADPSQGKLIILKENFRSHIEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKRDPNPANQAEFLLYDGSADSEEEDSDQGLPSISAGEVALVIKEIIRLHNEEGVDFKDMTLLTASRTRNDLILAEFDRHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLNDYALTALLKSPMFDFDEDELTRLALQASSSKSMENLYEKLRNALTDQGLEPQLIHGELRKKLQHFQETLNDWRNYSKTHSLYDLIWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFISMIDRILKNEHDLASVPLAAPKNAVQLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRQKGIGIKYVADVPVVAQDPHAPKQIRISMETLPYQQNAEELKLASLSEQMRLLYVAMTRAETKLYLVGKGKQAKLQERKWGTSQNGRLSSSLRSQLTNFQDWLYAIQSVFEKENLAYQTRFVTDQELTDEQIGVVEQADPIPVDDLTGNRQSEDIRRALDILENVDRLNSLYQAAIELPSVRTPSQIMKFYEPVMDSEGLDIMDAPRSYQTQLSFELPDFGKKKQVTGAQIGSAVHELMQRIPLDRPITKTSIRQALTQVQADAVVKKEIDLAKIEAFFATELGQLIQQEADHLHREAPFAMLKQDPASGQDFVVRGILDGYLLFDDRIVLFDYKTDRYHEPTGLVERYRAQLDLYAEALSRSYGLSQVDKYLILLGGTELQVVKVD* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0005 persistent direct high 3671 1.0 GCA_003943465.1_00723 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 230898 234185 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 7214 10501 GCA_003943465_1_2_240 GCA_003943465_1_2_240 - 395892 . PFAM:PF12705.6 PD-(D-E)XK-nuclease-superfamily MKLLYTDIRSPLTAHLAKQAQDLAAAGKRVFYIAPNSLSFEKERAVLEALENHASFAITVTRFAQMARYFVLNDVQDGQPLDDIGLGMLFYRILSEMDDRELKVYGRIKKDAQFIQQLLDLYHELQTAQMTFADLNYLEEPEKREDLLKIFTAFSAALQAGNYDATSKLTIFAQHILAGDLDGELANLALVIDGFTRFSAEEEYLVDLLHRKGVEIVIGVYASQKAYRTAFREGNLYQASVDFLLKLAQTYEVKPEYLAGDSTQSDDAFGKISKILESRYDFSETHVELTEDDRSHLEIWSVRNQKEELEYVAKSIRQRLHDGARYKDIRLLLGDVEAYQLQLKTIFDQYQIPFYLGRSESMAQHPLVQFLESLERLKRYNFQTEDLLNLLKTGLYGGLRQEELDSFEQYLRFAEIKGAAKLGRDFTINRQEKFDLKRLNVMRRSLITPLLDFFKSRSQTATGLLAKFTNFIKEVRLDTNLTGLLEDASQQEVERQEEVWKTFCHVLEQLAQVFDGSKLKIDDFLALILSGMLLAKYRVVPATVDVVTVQSYDLIEPMAAPYVYAIGLTQERLPKLAQNKSLLSDEERQALNQATGDEAELQIASSENLKKNRFAALSLLNSATEDLVLSAPVLINEVEDAMSSYLTELEIAPISLPIISKLPQASSDDIGTYRALLARVIDLYQEDIDREWTLEEQTFWAVAIRVLRKKLAAEGISIPQISKELKTEPLKSETLQALYPSEQPLRLSASALNEYFKNQYAYFLKYVLRLQEEWTIQPDARSHGIFLHRIFEKVMQEHLEQDFDTRLQRAMEETSWEAEFETVYGENGETQFARRLLLDTARATGRILAQSDGLEVIGEETDFGRDDRPFLLLDNGRALQVSGKVDRIDRLTETGSLGVVDYKSGDTKFSFEKFFNRLNSQLPTYLAAIREMPEYQEDKGIFGAMYLQMTEPLASLKDTKALDEAVKQVMKSQVYKGLFLADQAKDLGTNYEKSKVNLLTKEELEVILAYNAYLYQQAAEGILAGRFAINPYTENGRSIAPYVDQFKAITGFEANLHLGQARQLTKLNLEQYEKRPTGEKLRQAWLEKIKEELDK* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0006 persistent direct high 3287 1.0 GCA_003943465.1_00724 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 234325 235521 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 10641 11837 GCA_003943465_1_2_241 GCA_003943465_1_2_241 - 395892 . PRK12736 elongation factor Tu; Reviewed MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPSSVNQPKDYASIDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKIDLVDDEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDTKYEDIIMELMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEEIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGIQRDEIERGQVIAKPGSINPHTKFKGEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEMVMPGDNVTIDVELIHPIAVEQGTTFSIREGGRTVGSGMVTEIEA* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0007 persistent direct high 1196 0.999 GCA_003943465.1_00725 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 235644 236642 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 11960 12958 GCA_003943465_1_2_242 GCA_003943465_1_2_242 - 395892 . pfam13791 Sigma factor regulator C-terminal. This family is the C-terminal domain of a sigma factor regulator, this may represent a sensory domain. METFEILAKKSKRKRLWKTVAISSLVSLALLLLLGKGLIELASSNGRNLQKEYEVMSEIAYPNVDYDSLYYTQNSLFSGTLHSDRFKDLDGVKVAYPSYEGNYSLIGAFRDPTAEGTYLSLSGTYTRTLRQKYPVFYNINAKGTIDTKRIPQELASVKEMPNQLVEVALTFDKAYTYKEIQQMIPNNLKINWYWIGSQSEDVDNTGALRTDPKTTYGANASLLFTYDSDVRKKAKEAKKEQQTFLDYLKKADKNLFPSVSGYNTYNDVQSYLNKFSQLDIREAENRDQLTFSGVILTGKAENFTQLEGKEWIYASSIGASVPNQPYYKLDKE* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0008 persistent direct high 998 0.999 GCA_003943465.1_00726 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 236629 237144 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 12945 13460 GCA_003943465_1_2_243 GCA_003943465_1_2_243 - 395892 . TIGR02950 RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot: MWGGEIIKLDEYENILIGFAREIVFYLQKSGASKAEAEDVVQDVFVKMLETDLVIPAEKMRAWMYRVSIRRYIDRYRRDQHYLEILQKEFFKQDVIQPFENDYYELLRMTIEELPTKEAMLLDLYYFQNFTVKEIAHIMSYSVSKVKVQLMRSRIKLRHKLEKKGYKNGNI* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0009 persistent direct high 515 0.998 GCA_003943465.1_00727 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 237387 238322 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 13703 14638 GCA_003943465_1_2_244 GCA_003943465_1_2_244 - 395892 . COG3152 Uncharacterized membrane protein YhaH, DUF805 family [Function unknown]. MFSAYKKFWTRYADFSGRSSRSDYWWVVLCNFLITLPFSLIALFGFLIPLFSEIYYAGLYDYEPDLSGAMAGAGLAVFIMFLLAIYGLATIVPHLAITVRRLRDAGFHWAFIFLGVGPSIASLIPVLNILAALVSLPCGIALIVLLCQASKPAQPVKGAPYGQQGFQGQQFGQAQQPVQNQQFVQPGFQGQQQPTQNQQFGQVQQPAQNQQFSQPASQEQPFAQQQAPVQNPEFGQPQQPFGQNQVNQPTQPFAASQAQTQESTQSAFSASVSEPAESVHSVEAHQSQAETAEQALGTASEQINNSESISQ* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0010 persistent direct high 935 0.999 GCA_003943465.1_00728 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 238429 238974 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 14745 15290 GCA_003943465_1_2_245 GCA_003943465_1_2_245 - 395892 . COG2333 Metal-dependent hydrolase, beta-lactamase superfamily II [General function prediction only]. MLEVAKHFSIKEIYVSKGSLTQSDFVEKLERMQTGVHAVEVGDSLPIFDGALQVLYPEETGDGSNDDSVVLYGQFFGTSFLFTGDLEEKGEATLMRRFPQLKVDVLKAGHHGSKGSSSPEFLHQLQPKIALISAGKNNRYKHPHQETLDRFKNIQTQIFRTDEQGAIRFSGWGSWEIETVK* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0011 persistent direct high 545 0.998 GCA_003943465.1_00729 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 239050 239946 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 15366 16262 GCA_003943465_1_2_246 GCA_003943465_1_2_246 - 395892 . . hypothetical protein MDLDLGNYLGVFSSVEIKDLLLLQSSDLYDDNIPESHHLYMIFGFEKFYVDSVTKNETKENELIVKVKTADEALELIWEDEENIVSFDKSLDNRCVIINGVTYQILDLILDSIIKNGNQIVSEILYIGQAKGRTESRNTGKRLASHKTLQRILADCHDYKKDVDVRVVSFSIGENVMWTTLTTPETSNAKIEDIYEPKSKEFKLKISDASLINLVEAKLINYLKPEYNDVYKNKSVPSKEHKTYIEYNKFFNSMNIDLSKLDNFYFKQPNIDFNPRRQFISNKLNPTEYMEIIRDSLY* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0012 cloud direct high 896 0.999 GCA_003943465.1_00730 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 240005 241570 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 16321 17886 GCA_003943465_1_2_247 GCA_003943465_1_2_247 - 395892 . PDB:4BQQ_A Integrase MKNVITIEANAPRNSELASISLPKKRRVAGYARVSTDHEDQTTSYESQMRYYAEYISTRSDWEFVKMYSDEGISGTNTKLRVGFKSMIEDALAGKIDLIITKSVSRFARNTVDSLTTVRKLKEVGVEIYFEKENIWTLDSKGELLITIMSSLAQEESRSISENVTWGLRKQFAEGKVHFPYTNVMGFEKGENGEIVVNQEEAKTVRYIFQQALLGKTPYSIAKDLTQQGILSPSGKNHWSSVTIKRMLRNEKYKGDALLQKTYTIDFLSKKKNINKGELPQYYVENNHEAIVDKETFDAVQASLDRKEKGKGSTTLFSSKLVCGDCGHYFGSKVWHSTSKYRRVIYQCNEKYKGEKKCTTPHVTEDEIKDWFVSAINKVISNKDEIISNLETLLEISGTADLEQRMKELETEVEVVSQMISKLVTDNAVMPQNQDVYQEKYRNLVDRYDALIVELESVEKEHLDKAKRNKELQAFLKTLKSQECLVTEFDDLLWETAVERIIIKENRNIEFIFKNGEVTVH* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0013 cloud direct high 1565 0.999 GCA_003943465.1_00731 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 241567 242805 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 17883 19121 GCA_003943465_1_2_248 GCA_003943465_1_2_248 - 395892 . PDB:4BQQ_A Integrase MRIVRRIQPMMTPQKPKLRVAAYARVSDSRLHHSLSTQVSYYSRLIQSHPDWELVGVYYDEGISGKEQSNRQGLQDLLKACDDGKIDRILTKSIARFGRNTVDLLSTVRVLRQKNIGITFEKEGIDSLSSEGELMLTLLASVAQEESHNISENLRWQIKKKFEQGQPHTPQDIYGYRWNGENYVIEPDEAKVVRQVFQWFLDGDNAPMITKKLNEQGVLTRLGNPFTVSSVREFFKQEAYFGRLVLQKTYREPFSRNPKRNNGQKNKYIVEDAHEAIVSKSYFDVVLQEKERRYKVMYQESHMHKGTFRELIECSHCGKIMITRVDSKKVHRTIRYCCRTRDRFGTSSCPSKTLSEKRILATFEDKIGFKPDKNWVTENIKKVIYDSSVGLITVFPIKGRKYELKVRKEHFL* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0014 cloud direct high 1238 0.999 GCA_003943465.1_00732 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 242863 243024 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 19179 19340 GCA_003943465_1_2_249 GCA_003943465_1_2_249 - 395892 . pfam20612 hypothetical protein MTNDKLQDEMTYQLTIIQADRLLKSRIISEEVHQQFKEKMLEKYQPFISRLST* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0015 cloud direct high 161 0.994 GCA_003943465.1_00733 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 243129 243911 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 19445 20227 GCA_003943465_1_2_250 GCA_003943465_1_2_250 - 395892 . PDB:5UDN_B lysin MTSKEKVVANALSKVNTKVTVPTNPYGGQCVALIDKIVQEETGKNMAYTNAIDCLDKAKANGFQVTYDAVGVNPQAGDIYVIRVPSHSFGHIGVCLADSDGTGLEGVEQNVDGYLDSNRNGINDQLEVGGGGYTRRVSRKWYSDGRLVDRHSGGLVGYMVGWFRLPYEVATSTKKVETSEDEDMKNFVVRSKSGKQGYVAVVNGAVFGIGHIDTVVQLQSAGAAHLTLDDDDFNRFLESQKFDDEKLVASVQALEKAIKQ* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0016 cloud direct high 782 0.999 GCA_003943465.1_00734 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 243901 244317 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 20217 20633 GCA_003943465_1_2_251 GCA_003943465_1_2_251 - 395892 . PFAM:PF05105.11 Bacteriophage-holin MHLAVSTNKLVFSGIGGVIGSIFGEIDGFLYGLLIFMLIDYVTGIMAAIVEKNLSSSIGKKGIFKKAMIICLVAVAHMIDQHVLKQGGAVRTAVIFFYFSNEGLSILENATRIGLPVPNRIKQVLRQLNEDKEDENDK* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0017 cloud direct high 416 0.998 GCA_003943465.1_00735 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 244328 246184 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 20644 22500 GCA_003943465_1_2_252 GCA_003943465_1_2_252 - 395892 . PDB:5IV5_CF Baseplate-wedge-protein MADYGSNNDRGYNLLLRVEETGTSTANNTSTVRVQLWLRNGQTTFGMYNCSASVSIDGQTLSWSGRPDMYSMNSSLHLIDKTITIAHNSNGQKTIGFSATFSGSGGWSPGTLNTGYQSLRLRDIPRSSTASVSGNMMGSPITISITRASGDFTHKVTWQFGSLSGVVATGATTSCSWTPEVAKLAPQIPNATSGIGTILVQTIYGGKVIGESRIQVTLQLPSSVVPSLSSISLSDLNTIAQNAITGNTFVSLESNPKVTFNGATGIYGSTIPASGYRAEVFKFEGNSWIQLQNVATAQNGGVGGINHVGRAKISAFVTDSRGRQSPRKEVEISLLEYFKPILSFTSVRVGTAMNQLNVIRKVKIAPLIVGNSQKNRATMTWDILDLSTGTKTTNVGGAANWSTTTEHTKENFQATLNGSYDQTKSYTIIGHLRDLFYETDFEFTVGPEKVVYGLSPTGMGIGKAWTRGVLDVDGSQPSYFDGDIIMRNKKLIDIFYPVGTIYESTSYANPSTFMGGKWERFGNGHVLVGVSETESEFNTVSKTGGSKTHTLTINEMPVHSHPQYVSANSGNQAIRRDYSSDGGASLYPQGNNTGNSGGGQAHNNLQPYITVYRWRRTA* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0018 cloud direct high 1856 0.999 GCA_003943465.1_00736 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 246197 249085 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 22513 25401 GCA_003943465_1_2_253 GCA_003943465_1_2_253 - 395892 . PDB:3GS9_A tail-protein MLFLLDGQTKTPKWNGLPLHETLSAEVEETLNGDFTLQFDYPITDSGIYKELVTDKLILCPVPYANKQLFRIKKPIEENDRVRVTCQHITDDIMRRSILPVSNQNVTCQSALGQLISKAKRDIARFSFDSDITKKRSFNTTETATLYKVLMDGKHSIVGTWEGELVRDNFLFTIKEHRGKNRGVAISTHHNLEKFDRTRSSQSIVTRIYASSTFKPEGEKEEKTLSVMVESPLIHQYPYVHEAEYENNNLHTEEELRQWAMAKFSNDHLDQVSEVIEIEAFELDGQEVQLGDEVTLKSRLHQVDVVKKVVAYRFNALTEKIISISFDDTVSFGGQGVSGNPISSVANELLTLNDGKVQRQIERERANLSLVLDSNMSRVSKDVEDGIERAKAEAVRSGNQAAVDYLSSEAAEIRFAAIQKAKIDELTVSNSAWMRRLVSHQVLTEYLNAIEVNANKVVIPGSHKPVFSLDSNGNISIDTPLLKVRGEELATKSQLSKLSLTPGPKGDRGISISQIEEYYLVSNQKTGVLTSTSGWSKTIPVLTDTSKYLWNYKRTVFTDGNETLTTPVVIGVYGNKGDIGQTLYTWKMYADSDKGEGISSSPKGKRYLGLAVNRPTATPSTNPSDYTWSSFFEGTVLGGRNYIDDYAMRETSFTNLQSEWRKEIVEDSTSVSDISIKMTCTKSGSGGFKRDFFDLRTCIGQTMTFAVDMKTSRAVSMMIGSELGGTKSIQLTTNWERVVSSWKVSSNVAYSFVFTLSSGTWVQGDVVWLRNVQLEDGNVATTPGPSLADLMKQIDGKADQSFMKQQLDILTEKTESIRVDMEARALASEVSDWLKTYKEFEKSNKETLTKFNQDFVANTQRIAAIEADLKSNALLLQFVNTYLRAGDNGVIIGKKDNSEFIELTPQGMMIKSAGNAVMTVTSGVIKIHHGVFVETLQVGYYRLEAARHNPKHLVCRFIDSKT* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0019 cloud direct high 2888 1.0 GCA_003943465.1_00737 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 249085 249810 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 25401 26126 GCA_003943465_1_2_254 GCA_003943465_1_2_254 - 395892 . PDB:2X8K_A Distal-Tail-Protein MIQHNALIIDGLSTASFPYKILVEDRPSFHIPTSKSQLQEHDGLSGGLVLTNKHRKVIEKAYRIHLIAATEEQINEFSALLTREGFWLESERMKTTRYWCYKVDSFDIVQDNLGVFTLEVTFLCHPTRYFNDVSEYTLTKNGTIPLLGSALSYPKITVSGKSTGETSFTIGEQVIGLEQLNKTLVMDNDPHHPSFLTESGELVHWSGDFITLDANQKDKKVGVVLGTGITSLHIEILWGWA* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0020 cloud direct high 725 0.999 GCA_003943465.1_00738 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 249807 252926 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 26123 29242 GCA_003943465_1_2_255 GCA_003943465_1_2_255 - 395892 . UniProtKB:R4KJ43_9FIRM Minor-tail-protein MAGNIKGITIEIGGDTQPLQRALKGINKESAESTKELKQIDKALKFDTGNVTLLTQKQEVLSKQIATTKEKLETLRQAQSQVEAQFQRGDIGAEQYRAFQREVETTQNVLKSYETKLEGVNRALDSHGNTVESNRSKLNSLEAEQAQLASESEKLNSTFRLQESQLGSNASESEKLALAQRRIASQSELVERQIANLERQLELTKSEYGENSVEANRLEKTLNDTKTAYNNLQQEMEGLSNASQQSAASLEQTNGLLKADILMEFGDRLGELSQKLIEFGQQSLEAFREVDEGMDIIITKTGASGKALEGMQDIATELATSIPTDFATAGSAVGELNTQFGLTGDALSQASALLIKYSEINGSDVTQSAISAKQAIEAYGLESKDLAMVLDTVTFTSQQTGVGVQDLMSKVVSGAPQIKSLGLSFDEGVALMGRFEKAGVDSSAALSTLSKAAVNYAKDGLTLQDGLAKTVEQIKNSTNETESLTLASEVFGSKAAPRMVDAIKRGAFSFNDLSGTAKNALGVVTSTYEATLDPIDKFTIAQNTAKAAMAEVGGVLAEALAPVLELLAQLLQAVANWFSNLPSPIQTFIVIMGGLITVVGLLLPGLLALQAAAVAMGTTIGGLVVAAAPIVGTVLGIIAVIALLVVGIQELWQNNEGFRTAVIEIWNAIYAFISVILQEISTFIMTIWGTLTTWWTENQALIQVAVETVWNAISTVIQTVMSLIGPYLEAAWANIQLIITTAWDIIKTVVETAINVVLGIIKAIMQVITGDWSGAWETIKGVLQRVWQAIQQIVTTILSAIGQFISNTWNGIKDTISNVLTAISGIVSSIWNTIKSVITSVISSIVSFVSSGWSGIQQTISSILSGISSTVSSVWNGIKNSISNAINGAKNVVSSAINAIKNLFNFKISWPHIPLPHFSVSGSANPLDWLKGGLPKISIAWYAKGGILTKPTAFGMNGNQLMVGGEAGKEAVLPLTKQNLAAIGEEIASTMGTGGNVINVSITDVVIREEADIKRLANQVAERIHDELTRIQSLRGVRL* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0021 cloud direct high 3119 1.0 GCA_003943465.1_00739 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 252944 253066 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 29260 29382 GCA_003943465_1_2_256 GCA_003943465_1_2_256 - 395892 . . hypothetical protein MDDLKHISIGMALDYQTDYVALRSDKPQTRRATQADFDNF* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0022 cloud direct high 122 0.992 GCA_003943465.1_00740 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 253105 253524 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 29421 29840 GCA_003943465_1_2_257 GCA_003943465_1_2_257 - 395892 . PFAM:PF12363.7 Tail-assembly-chaperone MRKQVTICGKVYPLASNAYTPIAYKEQFGKDYFQDLFQMINAKSILDQLNQLEEGEELTAQNMDVSILSDFDMTFFHRLFWVFAKSANPRVKAFDVFFMEMEELPIQEIGPVLMEMLNQGMSTRKKSMKPMKRVKKSSR* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0023 cloud direct high 419 0.998 GCA_003943465.1_00741 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 253521 254111 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 29837 30427 GCA_003943465_1_2_258 GCA_003943465_1_2_258 - 395892 . PFAM:PF04630.11 tail-tube-protein MAEKNKVTFGLQDVHWAEVTTEGSDGALTYGNVERLRGAAELTLEATGDSGSYKADNINFYTTESNDGYSGTLKVALLTQEFLTRVLGETLDDTNKVITESSNATRKNFALMFRFEGDKKETLHVLYYCYASRPTVGSKTKNGSDINEVELKFTASPRPLDQVVRRRTTEETPETVKKNWFKSVYEPTVASGGSRT* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0024 cloud direct high 590 0.998 GCA_003943465.1_00742 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 254124 254441 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 30440 30757 GCA_003943465_1_2_259 GCA_003943465_1_2_259 - 395892 . PFAM:PF05657.10 tail-completion-protein MSEKEFFKQLKALHLPIAYHHFEEGHSPSPPFMVYYSPQSENFGADNQVYHKGAQFILELYTRKKDLDVEGKIETFLTEQHLFFDKVETYIDTEQLYQVAFHFAF* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0025 cloud direct high 317 0.997 GCA_003943465.1_00743 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 254438 254797 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 30754 31113 GCA_003943465_1_2_260 GCA_003943465_1_2_260 - 395892 . PFAM:PF04883.11 putative-tail-component MRADELSRAIEKELEEYLHQTTETVVEAVDDVTDEAIATLKSTSPKRSGRYVRGWTSKETSSTSTGKTKTIHNRTPGLTHLLENGYAKQNGGRVSGRPHIGPVEQKAVQALEKKIRGNL* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0026 cloud direct high 359 0.997 GCA_003943465.1_00744 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 254794 255123 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 31110 31439 GCA_003943465_1_2_261 GCA_003943465_1_2_261 - 395892 . PDB:2KZ4_A Head-tail-adaptor MKIAPLNQRVLFKKRVITQDDIGNETSQFTNLFSRWASVNQANSDEIFEVGQTKRKLQLIVTLRYDSEVASLDTTNTQLIFQGKSFNILSIDHVFFEKKMVKCRVEEEP* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0027 cloud direct high 329 0.997 GCA_003943465.1_00745 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 255124 255387 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 31440 31703 GCA_003943465_1_2_262 GCA_003943465_1_2_262 - 395892 . CDD:cd08054 Head-Tail-Connector-Protein MLTLLEAKIYLRVDTSGEDNLIKVLIATSEELCKDVLRVDELVDTPLIRSAMLYAVAYLFEHREEANHHDLKETLYHLLGGLRKEVF* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0028 cloud direct high 263 0.996 GCA_003943465.1_00746 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 255391 256578 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 31707 32894 GCA_003943465_1_2_263 GCA_003943465_1_2_263 - 395892 . PFAM:PF06673.10 Major-Capsid-protein MDKILELREKRAKVWDKAKNFLDSCRDEKGMISQEDSEHYDKLEQEVVDLGKEIDRLERQERIERELSQATSAAIVSQPRTDAGGDEKTGTASTVYNQSFWKNVRQKNFFDVNNTLNIGNDGQGGYLVPDEYENRLIKALEEENFFRRLATIIKTSNGERKIPVVTGHGTAAWMDENGTYPESEETFGQVTLGAYKVGTAIKISEELIHDSVFDLESYMAEEFARRIGSKEEEAFLIGDGSGKPTGVFTTVTEGVTSTGANITFDDVMDLYHSLKSPYRKNSVWILNDSTIKALRKLKDNNGNYIWQPSVQAGVPDMILNRPYYTSSYAPEIASGQKVLAFGDFSHYWISDRQGRSFKRLNELYATSGQVGFLGSQRVDGKLVLPEAVKVLTMKG* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0029 cloud direct high 1187 0.999 GCA_003943465.1_00747 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 256594 257280 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 32910 33596 GCA_003943465_1_2_264 GCA_003943465_1_2_264 - 395892 . PDB:1TG6_E Putative-ATP-dependent-Clp-protease MHKFWNWAKNEGERTLFLNGVIASESWFGDEVTPQLFKDELLSEQGDITLWINSPGGDVFAAAQIYNMLMDYKGAVTVNIDGIAASAASVIAMAGTIVNMSPVSMMMIHNPATFASGDKREMEKAIQLLNEVKESIINAYEIKTSLSRQKLSNLMDGETWLNAKKAVELGFADQIIFDGTHDNDESQDAYAFSMQTVTNQVVAKCEQLIDKPKVAVSTLEKRLQLLKP* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0030 cloud direct high 686 0.999 GCA_003943465.1_00748 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 257273 258514 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 33589 34830 GCA_003943465_1_2_265 GCA_003943465_1_2_265 - 395892 . PFAM:PF06074.12 Portal MGILELIGLKRARDKPTNSYEGSDFSYLFGRTTSGKNVNEMTALQTTAVYACVRILAEAIASLPIHVYKHTDEGKEQDVNHQLYYLLHDEPNPDMTSFVFRETLMSHLLIWGNAYAQIIRDGRGQVLALYPLLPDRMTVKRDDKGELYYVYQRSEEDNPNFKDKGNIILKKSEVLHVPGLGFDGLIGYSPIAMAKNAVGMTLATEEYGASFFANGANPGGVLEHPGILKDPSKVRESWNQVYQGTNNSHKVAVLEEGMIYKTIGIPPNEAQFLETRKFQINEIARLYRIPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPWVVRFEQAFQKALLLPDEKKTYFIKFNVDGLLRGDYQSRMNGYAIGRQNGWLSTNDIRRLEDMNPLSKEEGGDLYLVNGNMTKLEDAGGFIKDA* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0031 cloud direct high 1241 0.999 GCA_003943465.1_00749 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 258526 260118 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 34842 36434 GCA_003943465_1_2_266 GCA_003943465_1_2_266 - 395892 . PFAM:PF03354.14 Terminase-large-subunit MTYHYKPSPFMLPTSHYDEKKADRAVAFIQNLKHTKGKWAGKHFLLLPWQEQIIRDLFGIVKEDGNRQFLSAYVEIPKKNGKSELAAAIALYLLYADGEASAEVYGAACDRNQASIVFDVAKQMVGMSNPLNKRSKIMGATKRIVNYNNAGFYQVLSAETGTKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAGTDKNSICYELHTKALDILSGRKKDETFYPVVYGLANDEDWQDEENWYKANPSLGHTIQIDRVREAYRNAIDNPAEENVFKQLRLNMWTSSTVTWIAEHVYDKGNRPIVESSLLGRECYAGLDLSSTSDITAFVLVFPPRTEDESYIVLPYFWLPEDTLPLRCRRDHVLYDVWERQGYLKTTEGNVVHYGFIERFIEDLSTKFNIKEIAYDRWNATQMVQNLEDMGLTVVPFGQGYKDMSPPSKELYKLMMEGRVTHAGHPVLKWMAQNVVMRQDPAGNIKPDKEKSVDKIDGIVALIMGLDRCIRHKGDDGSIYDQRGILSF* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0032 cloud direct high 1592 0.999 GCA_003943465.1_00750 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 260120 260596 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 36436 36912 GCA_003943465_1_2_267 GCA_003943465_1_2_267 - 395892 . PFAM:PF05119.11 Small-Terminase MSDLAQRGRKPKPTGLKVLEGNLGKRPLNHKEPKPTKKAPRCPSWLEEDAKKEWKRMSKVLESMGLLTDMDMTAFAGYCQAYARWKEAEEFLTKHGSIIKTPNGYLQQVPQVSIAQTNMKIMLKFSEQFGLTPSARSRIQADSSDGEQDEMESLLREV* hallmark_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0033 cloud direct high 476 0.998 GCA_003943465.1_00751 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 261106 261204 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 37422 37520 GCA_003943465_1_2_268 GCA_003943465_1_2_268 - 395892 . . hypothetical protein MWELVVIDRGERHYVCDLLRESSTDPSYINGE* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0034 cloud direct moderate 98 0.99 GCA_003943465.1_00752 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 261209 261421 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 37525 37737 GCA_003943465_1_2_269 GCA_003943465_1_2_269 - 395892 . PF14192.6 Domain of unknown function (DUF4314) MNNGAKERVECLYPVGCRVKLLEMDDPFPPPIGTLGTVYGHDDLASVLVHWDNGSGLSVVYGVDRIVKVE* hhsuite_tools nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0035 cloud direct high 212 0.995 GCA_003943465.1_00753 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 261484 262752 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 37800 39068 GCA_003943465_1_2_270 GCA_003943465_1_2_270 - 395892 . PDB:3ME5_A Cytosine-specific-methyltransferase MNQLTFIDFFAGIGGFRRGLELAGMTCIGYCEKDKFAVRSYQAMYDTEGEWYSDDITKLKPNDIPKADIWTAGSPCQNVSIAGKRAGLRAERSGLFFTLVDLLKSQSEEDKPEWLILENVKGLLSSRRGVDFLDYLLELDEAGYDLEWQVFNSKDYGVPQNRERVYTIGHLRSRGRRQVLPLQPESSGNLKQLVGGMQSYRVYDTDGISTTLVGTGGGVGAKTGLYLIDQSTTKPKVTDQARCITARYTAGSTKRTAMNSGVMEVQPILTPDRVNKRQNGRRLKEKGEPMFTLTSQDRHGVVEGIKVRNGTKQGYQVAELGDSVDLSYPASPTKRARVGKGIAHNLSCSGQMGVVVWNGRMVKIRRLTPRECFRLQGFTDDLFEKAQAVNSDAQLYKQAGNGVTVTVVYAIGKAILSCLNLR* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0036 cloud direct high 1268 0.999 GCA_003943465.1_00754 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 262749 263996 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 39065 40312 GCA_003943465_1_2_271 GCA_003943465_1_2_271 - 395892 . PDB:5HFJ_C Adenine-specific-DNA-methyltransferase MTKESMTWLTLTVDQLNSASYNPRKALKKGDKEYEKIKRSIQEFGYVEPIIVNYDMTIIGGHQRLTVLKDLGFKEVQCVQVHIEDENKVKALNVALNKITGSWNEELLADLMLDLQEADFDTDLTGFEFPEIDQLFSKVHNKEVNEDDFDVDEELKKPTVAKQGDIWYLGKHQVICGDSTLPETYITLMGDKKANLVLTDPPYNVNVEETAGKIKNDNMSDSDFYKFLFAMFVNVEQNMESDASIYVFHADTEGYNFRKAFKDAGFYLSGCCIWKKNSLVLGRSPYQWQHEPCLFGWKNKGKHQWFSDRKQTTIWEYDRPKLSKEHPTMKPIQLMAYPIQNSSMRGTVVLDPFLGSGSTLIACEETGRICYGIELDEKFVDVIVKRYFEATGDQSIKVMRDGKEIKYADLVEVSV* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0037 cloud direct high 1247 0.999 GCA_003943465.1_00755 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 263996 264400 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 40312 40716 GCA_003943465_1_2_272 GCA_003943465_1_2_272 - 395892 . PFAM:PF05766.11 HNH-endonuclease MNDFKAKQVWKMRNEGLGYRKIANLLDLSLTAVKRYCSTNPHLKGYGQAVVAMISDGQRNGQLCKECLKPIEQPRKGRTKQFCSDSCRRKNWVTQHPEKADSHVCELCGKTFTAYGSPRRKFCSRTCARTPRRT* phrogs_hmm hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0038 cloud direct high 404 0.998 GCA_003943465.1_00756 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 264459 264593 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 40775 40909 GCA_003943465_1_2_273 GCA_003943465_1_2_273 - 395892 . . hypothetical protein MKSLNPWETKTDAPSNVKNRKIQKGVHKNRFLLTPNIIYDKVFH* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0039 cloud direct high 134 0.993 GCA_003943465.1_00757 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 264648 265013 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 40964 41329 GCA_003943465_1_2_274 GCA_003943465_1_2_274 - 395892 . PDB:5H0M_A HNH-endonuclease MPRRPSTPCKQNGCPNLVPYGHKYCDNYKANYQLDTKSTKAKGYNAQWNKARLRYLKVQPLCVQCKVKGRLTKATVVDHITPHRGDQDLFWNQTNWQALCKSCHDRKTKTTDRYVEYTYRF* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0040 cloud direct high 365 0.997 GCA_003943465.1_00758 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 265015 266052 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 41331 42368 GCA_003943465_1_2_275 GCA_003943465_1_2_275 - 395892 . PDB:5H9U_C S-adenosylmethionine-synthase MIISSEQVSVGHPDKICDQISDAILTECLKYDKSSRVAVETLIKDNQVVVAGEISTRHYFNLENIVRQVVEPLGMKNVRVTNLLGLQSSDIAQGVDNGGAGDQGMMFGYATDETPEYLPLPYVLATRVLEKLMSLGHPLLGKDAKAQVSYDYEKKRIDTFLVSIQHTEIANLAKVKRIVTEAMMSVALRYRQNLDFKVLVNPTGRFVLGGSFADAGVTGRKIVADTYGGFAHHGGGAFSGKDPSKVDRSAAYMARKIAKDIVREGYAKRCEVQLAYAIGVAEPVSVYVETFGTSRYTSTQLEGMIRERYDLTPQGIIKELHLLNVDYTKTSCFGHFTKAYLPWEK* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0041 cloud direct high 1037 0.999 GCA_003943465.1_00759 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 266100 266282 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 42416 42598 GCA_003943465_1_2_276 GCA_003943465_1_2_276 - 395892 . . hypothetical protein MTKRQQEKLNALLTEIAKEELFVETLEKRWSDNLDFYDVSVWGIKRALERAYEAGQKSVK* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0042 cloud direct high 182 0.995 GCA_003943465.1_00760 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 266371 266598 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 42687 42914 GCA_003943465_1_2_277 GCA_003943465_1_2_277 - 395892 . . hypothetical protein MWTDGRIDYQGQKVDYIAKVSPQPSEVGIDLGCIFKLDIEVAEETIVSYDRGWELYPETEEREAILEAVLMVLTV* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0043 cloud direct high 227 0.996 GCA_003943465.1_00761 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 266784 267287 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 43100 43603 GCA_003943465_1_2_278 GCA_003943465_1_2_278 - 395892 . PFAM:PF05263.10 transcriptional-regulator MDKVEYIAKNYRDMKMKLHLVQEKLLNYRPISENSVIQSLVFEKSEHEKVKKSKNHGRSELISLSFREKQEQENQEYLSSLLNTYYCLKMDLYYFEFVMELIPEDLKPLSKDLIYLGKSWTELEEIYEISHSTLAYRRRKILKQLRKCYRWTSKSLELKVEDYHIPI* phrogs_hmm hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0044 cloud direct high 503 0.998 GCA_003943465.1_00762 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 267280 268656 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 43596 44972 GCA_003943465_1_2_279 GCA_003943465_1_2_279 - 395892 . PDB:1Z6A_A Helicase-of-the-snf2-family MKLTLHNYQVVAKDFIIGHPYAAVILDMGMGKTATTLSAVNELMFDRFEVTKVLVIAPLRVANTVWSDEIEQWSELRNLRYSKIVGTPKQRKVALQKDADIYIVNRENLPWLVEQCSPYFKWDMVVIDELSSFKSWQSKRFKAFMTMRPYMKRVVGLTGTPSSNGLMDLFAEFKVIDGGERLGRFIGEFRSRYFEEGRRNGNIVYEYIPMDYAECQIQDKISDITISMKALDYLDMPELISTKKLVRMSEKEKEKYIQFKKEYVLSELDGLEVTAANAASLMNKLVQLSNGAVYSDDHTVVPLHEQKLDALEDILESANGEPVLVAYWFKHDLARITGRLEKLKVTSRVLKTEEDIREWNKGNVPVGLIHPAGAGHGLNLQKGGHHLVWFGLTWSLELYQQTNARLWRQGQEAETVVIQHIVTEGTIDEEILKALGNKDAQQERLIEAVKAQVGGTDG* rep_hall_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0045 cloud direct high 1376 0.999 GCA_003943465.1_00763 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 268637 268918 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 44953 45234 GCA_003943465_1_2_280 GCA_003943465_1_2_280 - 395892 . PDB:4QBL_E Nuclease MREKYVEQALVKSVKARGGICPKWVSPSFSGVPDRLVFLPKGKFGLVEVKAPDQKPRKLQVSRHKLFERLGFKVYVIDRIEMIGEVLDEIDIT* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0046 cloud direct high 281 0.996 GCA_003943465.1_00764 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 269203 271488 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 45519 47804 GCA_003943465_1_2_281 GCA_003943465_1_2_281 - 395892 . PFAM:PF04735.11 dsDNA-helicase MKFTLSHSGQTGIQTTTVYPNMVTITDKAILQNVAQFDHVAGLFVQNTRSNANFIKSDVLVMDIDNDHTENPDEWLTEEFLKDVFADYNFALVTSRSHMQTKAGKAPRPKFHIYFQINEVTDKDIYVAMKEELCNQYKFFDDHAKDAARFFFGNPNAQVIWHDSWLTIDEDLFQVVSIEDEEDFDADFYTPPSGPIQQGSRNSTMSVFAAKILKRLGVTQEARDGFDEQAQKCVPPLDKAELDTIWGSAVRFYNRTIKTSKSYVAPDAFNRETLKPDDYSDVGEAGVLAREYANKLAYTNATDYLYYDGTHWRENKQLALGAVVHFTDEQLAEAIALLESADKQLQSSGIDELTIKAGGKRLENAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPILSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAVSPSDQGMGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGSYSGKLSADALTMSNKRNVSPELAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPFHFVPSHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGRSDIKNFADHLYDNAAPAIMSWIIEGAEKAIKANFKTNVPTAVSSSVKAYREANDWLGHFLGDCCQVGDQLSEKSGELYSQYRAYCAKNMEYTRSTTDFYSALEQAGFKRKRTSKGNHILGLKLVEDGYDFLD* rep_hall_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0047 cloud direct high 2285 1.0 GCA_003943465.1_00765 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 271765 271899 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 48081 48215 GCA_003943465_1_2_282 GCA_003943465_1_2_282 + 395892 . . hypothetical protein MVNEPYIEPDDDVADTLIAISVISKLLARKIMEEENNEQNERTE* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0048 cloud direct high 134 0.993 GCA_003943465.1_00766 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 271874 272197 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 48190 48513 GCA_003943465_1_2_283 GCA_003943465_1_2_283 + 395892 . . hypothetical protein MSKMKELNRLIHDMEETAKYYLRLVDEFKKLLTTEDETAPKSNPPKNEPQKEIQLEDVRAVLATKAKDGYKEDVRALLNAYGASSLSVLDPKHFAAVLEEAGGIGND* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0049 cloud direct high 323 0.997 GCA_003943465.1_00767 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 272190 273311 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 48506 49627 GCA_003943465_1_2_284 GCA_003943465_1_2_284 + 395892 . pfam10926 Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins. MTNHAILSASASHRWLNCPPSARLTEDLPDTTSDFAIEGSDAHELCAYLVEKALGRNARDPTEDLTFYNDEMQECAEEYRNYVMEQVEKARGYSRDPTVLIEQRLDFSKWVPEGFGTGDCIIVADGRLQVIDYKHGLGVQVDADHNPQMMCYALGALEMFDGLYNFDNVTMTIFQPRKHNISTFKIEKTELLEWAENVLTPKAELAFKGEGEMQSGKHCQFCKLKNVCRKRAEDNLALAKMEFADPASLDNEDIAEILPKLDLLISWANDIKAYALNQATDGHPIPGYKLVEGRSVRKFSDESAVSQAVIEAGYDPYEKKLLTITAMTKLLGKKTFNDLLGGLIIKPSGKPTLVPIDDSRQEMNLAKNEFKEE* mmseqs_cdd common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0050 cloud direct high 1121 0.999 GCA_003943465.1_00768 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 273316 273864 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 49632 50180 GCA_003943465_1_2_285 GCA_003943465_1_2_285 + 395892 . PDB:1JE5_B DNA-Helix-Destabilizing-Protein MTTKVITGPNTRFSYLNANEPKSINGSTPKYSASLIIPKEDTATINKIKAAIEQAYKEGESKLKGNGKSVPALSTLKTPLRDGDLERPDDEAYKNAYFVNANSPHKPGVVDGNRQEIIDTSELYSGIYGRASITFYAFNSNGNKGIACGLNNLQKLRDGEPLGGRTRAEDDFATEDDDDFLN* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0051 cloud direct high 548 0.998 GCA_003943465.1_00769 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 273883 274050 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 50199 50366 GCA_003943465_1_2_286 GCA_003943465_1_2_286 + 395892 . . hypothetical protein MMYTILTCTIMGLWVLIGLYFGYMTIRDDIRNEVERKAKQNKEKLSQTPLSRKNK* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0052 cloud direct high 167 0.994 GCA_003943465.1_00770 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 274099 276054 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 50415 52370 GCA_003943465_1_2_287 GCA_003943465_1_2_287 + 395892 . CDD:cd08642 DNA-Polymerase-I MPIKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDFNKEKLPQDILEALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSLEGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAELKTLTGLEKPNSVLQMISWLREHGVATDSLDKKAVKELLKTVDETTAQVLKLRQQAAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARELFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLSEEELQPLVNSWRQANPNIVLYWWDVDNAVKTAVKELLPTSTQNIQFEVKSGILFITLPSGRKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLNDFKIVGHVHDEVIIECPIEQKLDEVASLMGIAPDWLSDINLRADGYECFFYQKD* rep_hall_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0053 cloud direct high 1955 0.999 GCA_003943465.1_00771 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 276093 276551 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 52409 52867 GCA_003943465_1_2_288 GCA_003943465_1_2_288 - 395892 . . hypothetical protein MDSRHSGLLRGTFRQCRIMGIPILTAFVPVAEEDYEQMVWWYNNSVNDYLKDYRKPSKNAPKISSWEAFTEKQDLPMIDDDIELYLFMDQFEFLKAKLAESNFQAPDILEMLFDGYENKEIFEKLGVQKSAGYKKVKNTQKEGLELYNKFNK* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0054 cloud direct high 458 0.998 GCA_003943465.1_00772 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 277008 278162 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 53324 54478 GCA_003943465_1_2_289 GCA_003943465_1_2_289 + 395892 . . hypothetical protein MESKFTFKNKIEKYSLTDTFDPNSGQEILTLYCSHMPKPDYAKYNFDSLTGLVTSNVDSKKNNPFGEFLSINKSTFIDYLNKYGFLFDWESSENYDSIEFNYILEFQSRLKLLLSIFNNIAKSIEYKELLLSTFLLIGKPQLELNLGKSKFIFPSLFPFHVLRNSIPEKNLSDMTTRHTSSTGKITTYIKVENKFSENGYTCDLDFLYYQDIIENLQYDDFIKDIFYLYVNKPANLEPITAHIIDFIYLFFSKVGICDISNTNLKFEDEDLSNFMKSSELKNALLILSKEILALEINRGLAKVQPKINLDTLLPDWNLPDLISAFYFTLFYSNPKIAMYKICENIGCNTPFYVQRSNTIKKYCSESCKNASSQRRYRNKQKDFQ* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0055 cloud direct high 1154 0.999 GCA_003943465.1_00773 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 278184 279464 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 54500 55780 GCA_003943465_1_2_290 GCA_003943465_1_2_290 - 395892 . PFAM:PF10117.8 restriction-endonuclease MLTVPNKSLLDMCRVATNMEGDTFVGIKAEIIEGVQEVTVNFPLGFEIAKDVETARRDIIALVSVLQAHNDEESRLRTVNVNQALKTLNFPMEAYTFVIHDFINRGTYYKETEEYYIQTLGGRINWARTIKRVQPVVQGNGFKFLKMESKKQSDTDITLLTEINKFCVYEAFLNMGWLYQLPQPEKARINYNRSQFESIIKKKMATTFNDMERRLFQSMIDILNYKDRQEEPDKFYFGTNNFQYIWENLIDYTYGIANKTSYFPRTKWDLVFETKTSKGYALEPDTIMVHNDNVFVLDAKYYKFGQTNLMKDLPPSTSINKQITYGEYVANQDLLKKLHGQNSKVYNAFLMPFSKSHEIFQTDGMYQYIGEALGEWKGQDKTYERVQGILVDVKTLVHNSARNRTQYIQELSDLISEKVDEKLANM* phrogs_hmm hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0056 cloud direct high 1280 0.999 GCA_003943465.1_00774 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 279445 281082 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 55761 57398 GCA_003943465_1_2_291 GCA_003943465_1_2_291 - 395892 . COG1401 5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms]. MLKDLGVIFDEQSRIASEFLSKNDTEVILSTEFKENYKKHIDMLGDEIYFEQYNSKYHTNSKFIIIPNQWFYLAFIAAPYYKEFLKYKSILLDTLSGDDFKEFCQTARNGELDENLFDTISVDLTETDTLFLKKFVTDYHWWHGGKEIHRGDSFISPILALLKLINASSEHVAIIVKYLVDADFDLSDVNKYFELVEMDSRSVVTTNYDNTNLVGDNILLYGVPGSGKSFKIATEYCNDENRMERLVFHPDYMNTDFVGQIMPTVKENGDITYLFSPGPFTRIVKKAIDNPSEHYYLVIEELNRGNAPGIFGEIFQLLDRSASGESVYGINNSILATEIYGDKSHQIKIPSNLSLLATMNTADQNVFTLDTAFQRRWTMEMIENDVDLSEYGNYFIADTQYSWKVFNKVINKKILETSSQTLTSEDKRMGAYFISGNVLNIERIHQVPAGDSGNEFNKKNKRFAEKVLKYLWDDAFKFNREDIFDVALYPSLEAIIKRFTDNDNPENGRFDVFAKDIKEELENLKEATLIDNNNDTGEEDVDSTE* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0057 cloud direct high 1637 0.999 GCA_003943465.1_00775 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 281145 282371 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 57461 58687 GCA_003943465_1_2_292 GCA_003943465_1_2_292 + 395892 . PDB:3ME5_A Cytosine-specific-methyltransferase MTFDRHILESNRKLTTTNILSKKTTIAENLSGNDIKYLRKKYNLTQKELADALGLQKFGDRTIRRWEAEETHPSKLEQSSIQSFFNSLKNPPFIISENLPFKMIDLFAGIGGTRLGFQLTNEVETVFTSEWDKFAQKTYITNFGDTPEGDITQIDENTIPDHDILVAGFPCQAFSQAGKRLGFEDTRGTLFFDVARIIKAKRPKAFLLENVKNLKTHDKGKTYKIIISTLENLGYSTSTVLFKARDFGVPQNRERIYIVGFDKTCVNNFSEFRFPEPFHLETKLGNILQTDVDEKYTISDKLWEGHQRRKAEHKTKGNGFGYSLFNADSPYTNTLSARYYKDGSEILIEQKGKNPRKITPREAARLQGFPEEFIIPVSDTQAYKQFGNSVCVPTIHEIAKQILAVLKK* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0058 cloud direct high 1226 0.999 GCA_003943465.1_00776 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 282485 283174 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 58801 59490 GCA_003943465_1_2_293 GCA_003943465_1_2_293 + 395892 . PDB:2FJR_A Repressor-protein-CI MFSHGRLKQRRLEIKLSQTAIANQLNVHRSAYHNWENGRNTPNQKNLTALAAILDVPVTYFESEYNIVNNYLQLSPDNQLKAEEYVEELLLSQQTSNVIPLFSVQVLSDIQLSAGLGEGFFDEFETETIYSDEEQYGYDIAAWIEGDSMEPVYKSGEVALIRSNGFDYDGAVYALSWNDSVYIKKLYRDEDGFRMVSLNKDYPEKFIPYEDEPRIVGLVVGHFMPVEGV* common_virus_hmm common_virus C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0059 cloud direct high 689 0.999 GCA_003943465.1_00777 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 283177 283404 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 59493 59720 GCA_003943465_1_2_294 GCA_003943465_1_2_294 + 395892 . . hypothetical protein MKLKDILELGTYGFNPNCKVEIFCMDNFEERLENEGFDEILIPQNDDAKIYPYAFLIEDSILIAMTEVDDDINEC* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0060 cloud direct high 227 0.996 GCA_003943465.1_00778 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 283394 283522 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 59710 59838 GCA_003943465_1_2_295 GCA_003943465_1_2_295 + 395892 . . hypothetical protein MNVKEMIYIKDERIIFTPDKFEYDITDYIGELIEELEKLKRR* . hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0061 cloud direct high 128 0.992 GCA_003943465.1_00779 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 283527 284942 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 59843 61258 GCA_003943465_1_2_296 GCA_003943465_1_2_296 + 395892 . cd01700 umuC subunit of DNA Polymerase V. umuC subunit of Pol V. Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage. MGYIDYSIEPQSDIAFLDMKSFYASVECVDRGLHPLYTSLCVMSRADNSAGLILASSPMFKKVFGKANVGRSYDLPFDINTRKFSYQNAWKQGLEVTPKYKSFIEHWAKRTLIVPPRMDRYIEKNLEIQHIFQDYAAPDDILPYSIDEGFIDLTSSLSYFISDKSMSRKDKLDNVSAMIQRDIYSKTGIISTVGMSNSNPLLAKLALDNEAKKTATMRANWSYEDVETKVWAIPKLTDFWGIGSKTEIHLQKLGIHSIKELANFNPDILKKEFGKVGVQLWFHANGVDESNVHEPYKPKSRGLGNSQVLPRDYRTQREIEIVLAEMADQVANRLRSAHKKATVVSIHIGYSRTEMKKSINAQKKIDPANLPKTMVGHVLELFRKKYTSGAVRQIGVSYGGFVDENFTLLSLFDDVEQIEKENRLQTAIDVVREQFGFLAIQKGTVLTEGSRNIERSKLIGGHSAGGLEGLK* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0062 cloud direct high 1415 0.999 GCA_003943465.1_00780 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 284939 285307 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 61255 61623 GCA_003943465_1_2_297 GCA_003943465_1_2_297 + 395892 . PF08863.10 YolD-like protein MIDRSYLPFQSAREYQDTKMQKWMGFFLSEHTSALTDDANKVTYMSDLSLEKKLLLLSQVYAGQLNTRIHVVKKNNQVSYTGTIPSLTKDFILIKTTTGHINLKLKDIVSIELVEEVLYESA* hhsuite_tools hypothetical_protein C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0063 cloud direct high 368 0.997 GCA_003943465.1_00781 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote cenote CDS 285294 285593 GCA_003943465.1 RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465.1_RJPR01000002.1 GCA_003943465.1|RJPR01000002.1 GCA_003943465_1_2 GCA_003943465_1_2@C20 61610 61909 GCA_003943465_1_2_298 GCA_003943465_1_2_298 + 395892 . pfam19385 Family of unknown function (DUF5960). This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000561) is described by MIBiG as an example of the following biosynthetic class, RiPP (ribosomally synthesized and post-translationally modified peptide). MNQLEFQRNHLQMDYYSESYQDFERDFYRYSNMNIPLTFLTDDILKTMATSRKNYFVLNKEKSRDNRDHFFIFEVRTLEENPLIYHYTYKKTTTYLAEK* mmseqs_cdd nonviral_gene C20 61909 223685 285594 GCA_003943465.1|RJPR01000002.1@region_223686_285594@tool_cenote_CDS_0064 cloud direct high 299 0.997 GCA_003943465.1_00782 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 54481 54717 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 1 237 GCA_003943465_1_6_43 GCA_003943465_1_6_43 - 112639 . . hypothetical protein MQEKNKTSRNIGILSIVGSLWLPLPGIILGTLAIIEANTRQKESGLDYKTERIIAIVGIVISAINWIAGILLTMNGFV* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0001 cloud direct high 236 0.996 GCA_003943465.1_01430 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 54801 55181 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 321 701 GCA_003943465_1_6_44 GCA_003943465_1_6_44 - 112639 . cd00158 Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. MGIWTLWAILLGMLAWMGFNYFRIRRAAKVVDNSEFEALIRQGQLIDLRDPSDFHRKHILGARNIPSQQLKSSINALRKDKPVLLYENSRGQRVTNAAIYLKKQGFNDIYILSYGLDSWTGKVKTS* mmseqs_cdd nonviral_gene C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0002 persistent direct high 380 0.997 GCA_003943465.1_01431 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 55183 55401 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 703 921 GCA_003943465_1_6_45 GCA_003943465_1_6_45 - 112639 . pfam06014 Bacterial protein of unknown function (DUF910). This family consists of several short bacterial proteins of unknown function. MKTLYDVQQFLKNFGIIIYMGKRLYDIEMMKIELERIYDAGLMDKLDYLEAEAVLRREHQVELKYLEDKGRN* mmseqs_cdd nonviral_gene C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0003 persistent direct high 218 0.995 GCA_003943465.1_01432 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 55820 56560 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 1340 2080 GCA_003943465_1_6_46 GCA_003943465_1_6_46 - 112639 . PDB:4OLS_C Endolysin MTTANELVQFTIGLANSGMGVDKDGFAGTQCADLLTYPSKHFFGVDLWGNAADLLDSAEAAGWEVHRMPTDENPRAGAFFNMNAWFGGVNYGHCGIVIEDSDGITMRTVEQNVDGNADALIVGGPARYNNRGFEDVIGWFYPPYSDGAAPATPADVTPTSDEIELTPETGTFKVGEAAINVRRAPNLNGEIVHVYEPGESVNYDSKGSANGYRWISYIGQSGNRNYMAIGQTDEAGNRITLWGDLS* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0004 cloud direct high 740 0.999 GCA_003943465.1_01433 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 56653 56913 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 2173 2433 GCA_003943465_1_6_47 GCA_003943465_1_6_47 - 112639 . PFAM:PF04531.12 Bacteriophage-holin MNKINWTVRLKNKNFWLALVPAIALLLQAAGDIFGLKLELGVTIDKILVFINVLFALLVLVGVVNDPTTAGLGDSQKALSYDEPKK* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0005 cloud direct high 260 0.996 GCA_003943465.1_01434 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 56910 57317 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 2430 2837 GCA_003943465_1_6_48 GCA_003943465_1_6_48 - 112639 . UniProtKB:A0A075EHP3_9CAUD holin-protein- MNHLIDFVDKLTPVLVVIIPSYFSYRSNQNSKETDKRIEALVEDLGDLKESVTNIQNIGNRNNQDLNLIQKGLQRLQRFRLQENLKKALRRSQTTQHELEELSRLYESYVELGGNGAIKLLFEKFSKLPIKEDKV* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0006 cloud direct high 407 0.998 GCA_003943465.1_01435 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 57330 57584 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 2850 3104 GCA_003943465_1_6_49 GCA_003943465_1_6_49 - 112639 . . hypothetical protein MALEITKTTKIVGRIKIDDTVIKTMTADIDDKGVTTPNDWVDNAEAYAANRHEVRKQEQAFQNAVYATEDAIIAELEAKGAEKK* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0007 shell direct high 254 0.996 GCA_003943465.1_01436 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 57587 57778 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 3107 3298 GCA_003943465_1_6_50 GCA_003943465_1_6_50 - 112639 . . hypothetical protein MDNKFYNLMLAGYKERLDNSTLGEIELKARLILEQEKNAELQAKVEELEALLAKETEPAKEGE* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0008 shell direct high 191 0.995 GCA_003943465.1_01437 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 57788 61954 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 3308 7474 GCA_003943465_1_6_51 GCA_003943465_1_6_51 - 112639 . PDB:3GUD_A Neck-appendage-protein MKNNVRIAIRDSTDTHVVGFFDNQNGIKYHAADLTRFLKGSCSYLVIKYRSKDIAKVKSGCRLAFRFKGKDYWMTIKSIKKTGYQMEITAYSLSLEANEEKRGAYKASRAMSIREYVDVFDPEHALEVGINEIADKSIKLEWSGTDTVLARLYSIANSFGAELEFVTELNRDYSLKRHILNIYRAGNLGKVKTGLPIRVGKDLKVINYSDDINDIKTAIRGSGKDGLTIAGLDKKIYDDKGNLIFYSQGNTIYAPQSRDQFPSVTKKTDDGWIILENGETEHASKEALFGYLLSELKKRCVPKISYSTEGKVNGEIGDTLTLIDSEHYAPPLYVQARISEQTESLLGAKTDKTTLTNFERKSSQIASELLKRVEELAEEAAPYVIKLATDKGVVFKNNQGESTVFPTLKKGNKTVECTWKWLIDNEDFGQAPNHKVTAAGMRESLTLTAIALVKGQEVAREQLTFTNVNDGQNGAKGDPGPQGPKGSTGATGATGATGARGPQGERGPQGAVGPQGPKGERGDPADTAELKKAVTAAQTQLTDVKNNLEGVRANLTQAQSQLSTNIAQIRSDVGAIRTQQTVYEQSNTQNLARITGKLGDKASKAEVEQTAAGIREEIASQVVGGRNLLKGSKGPFKPNRNPTNFDNNVLYHNETSVYMVNGQRYRISAKTDGTFTSHHDGLKESDNVVLWIMDKTVSNYQIVSDAKTGTTGTEFVWNRPTGTYHLRVNTYHKDTQKLKSVWEVKVEQGSFKTDWSPAPEDTEGLITEAKATFERTAQGLRTDLSAVQAYVSTDGTRAEALLSHSREETARQLTAERKLIEAGYVAKATYAEDVRGLTRRFEELTVGGANLLAYANFNSEGYYQNGLKRDRNYVYSNLIEIKSTDYILQVWELEPQGKRLWVGLQLFDEQRNPVANGYSTFWFNGYLKRTIKPTQNARYLAISFENLILDKDKAKFKLETGTIPTDWSPAPEDTTAYADTKLAEYKQDIDGQLASVQAALNTANGSLTSFNTWKQSAQETLNKVGKVETGLNETKTSFAEFKRTAEGQLSTITQQVAGKVSQTELTQRANQITQAVQELSNSVLRKSQVKINEGGIISSVEKTINGQTLASMIAQRSENVEIIARLLKVKGDMIVNGSITADKLNIVGELSALSANLGRVRSGEIVNEYRTNSTNGEVVIGNNVKITNYNRSGPRIHIPKEEIMLLPNGLLMNAYDNRDRVSHTMRVSPEVMEFQKINYAQAQGGTGSWSLGYSNSYSMLSIDVALQKIRLQATSNLMWGVSATFVRIGNLVTISVTRIITNINQIVENARASERIPNGFRPISQAHLTLTGNVNATIDATCIVHLETDGSIRFTNNKTGNHVWSGTVTYTTVDDFPIVGNIPNGKLI* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0009 cloud direct high 4166 1.0 GCA_003943465.1_01438 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 61954 63348 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 7474 8868 GCA_003943465_1_6_52 GCA_003943465_1_6_52 - 112639 . PDB:5LY8_A Distal-Tail-protein MSGAEFVKTRKKLKKISVPFYVAYDSVADYDALQTALNVSEPKELTFSHLPDRVFYAIPGGDLNFKEIRFNGKGTINFNIADGLGHAKNPKRFEFTKNAQGIWEAIINNTGSEPVPIDYKIKLKKESGFVAIVSQYGAIQYGKFEESDFVQEKKNVTLASNQGGDFANWQNGTVFYENQGKKAVTTMSADTAFNGRLGLLPRGFNNTGNNPFFGAIKEFNLSVGATEWYIWARAWFETGLMGQTGAWCLAVVDNANRFIAGMAIEKHDRVGNRASVYFLLGDGKGGSHIKHKIDFTPSFWVTDNPYGTEARNQNRNMFDLRKEGDKVTFFWYGQYFSYFESGIKNVEASKVQFFCGQINGRNTNDQIVTHQYLNDFSFFKLNVPFWRDVPNRYPAHSELFIDASGEINPDEPGRLYVNGLLAPDDEILGSQFFLAPPGETKVQLLVSSFSEVASAYAEIEEAWT* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0010 cloud direct high 1394 0.999 GCA_003943465.1_01439 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 63463 66429 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 8983 11949 GCA_003943465_1_6_53 GCA_003943465_1_6_53 - 112639 . UniProtKB:R2PRN9_9ENTE tail-tape-measure-protein- MATEIAQAYVQLIPSARGITGKIQAILNPEASAAGQSAGQSLGSSLVSVATKAIAAAGIGKAFSAAIHEGAALQQSLGGVETLFKGSADTVKRYAAEAYKTTGLSANAYMENVTGFSASLLQSLGGDTAKAADVANMAMVDMSDNANKMGTDMGRIQDAYQGFAKQNYTMLDNLKLGYGGTKSEMERLLADAEKLTGVKYDINNLSDVYNAIHAIQENLDITGTTAKEAASTFSGSFSAMKAAAQNVLGQLALGQNILPALHALFDTTKTFLFDNFIPMIGNVFSGLGLLLTEGISKIASELFGDAFGSAVYDQLSRVTGIFQTFFDMIFGSLNKQDNIDILKVLGFSDDAAKQIVNIADNIRVTFENIGATIGNIAGIVSSFIGELLGVRDGKQEVNLLGTAFEILTGFIKEVSSILKDVTKFFKDNQLAADLLKTSVVALGVGLPVAKIATFVQGLGGIPGILAIAKTAISGFATSAIAAISSIPLIGWIAAAIAALTWFFTQTETGRQIWAAFVDWIKVAWQGIAEFFSGLWSGIAEGANNLWSSVSEAWSSAVENVKNLWNGIVVFFDALWLTIQTAASIAWTQFTTTIMSIVQPFIDGFLNLWNGVSNGISQIFEGIKMIFQGAWEFIKSIFLGAILVIIDLVTGNFTQLGADLGLIWEGIKNGVSLVWEGIKAIFMGLVDAIVGFGKAAFENFSAALSAIWEFIKSAASAAWEWVKSTVTNLITGLVQGAQNIWNGFMNFLSSLWESIKSTAVNGWNALKSGVISIINGLIQGAQNAWNTLQQGVTNVVNSVTNIFKGLANINLWDAGRAILDGFLGGLKSAWGSVTDFVGGIAGWIRDHKGPIEYDRKLLIPAGNAIMGGLDKSLKEKFKEVKKTVSGMAGSIADSFGDEILAPDLGVLGNNEVQVALTSSKLLDQILDPDHNRDKESTLLETIVKLANRPVIVSQQVDTREVSQILAEPIAEEQEKRQTILKAVDGLGWT* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0011 cloud direct high 2966 1.0 GCA_003943465.1_01440 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 66429 66803 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 11949 12323 GCA_003943465_1_6_54 GCA_003943465_1_6_54 - 112639 . pfam17318 Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria. MIDLDEDALICDLAETYGIYDYRQLPAQQVAVFAFGLKEDSRIKMALSNQKVPFETLLMASTLDRLSTLLWFKTKDGQKGANRPTMIAQKLIGEEKERDEMVFSSGEEFEAYRQRILAEVGGEK* mmseqs_cdd nonviral_gene C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0012 cloud direct high 374 0.997 GCA_003943465.1_01441 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 66818 67123 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 12338 12643 GCA_003943465_1_6_55 GCA_003943465_1_6_55 - 112639 . . hypothetical protein MVKRKRNKRNHGAQGKTFKGKTSTGFAFEITQERLDNYELLEAVAEVDKNPAVLPTVINLMLGDKAQDLKDHVRTEAGMVPTGKLMQEVEEIFKSRTHLKK* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0013 cloud direct high 305 0.997 GCA_003943465.1_01442 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 67127 67678 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 12647 13198 GCA_003943465_1_6_56 GCA_003943465_1_6_56 - 112639 . UniProtKB:F8S0S2_9CAUD tail-protein- MALEANVTTAKPKVGGAVHSAPLGAKLPVDATSKLDVAFKSLGFISEDGVTNNNSPESEDIKAWGGTIVNSSQTEKKDTFVYTLIEGLNIDVLKEVYGAENVSGDLATGITIKANSKELENHCLAIEMILKNGALKRIVIPSGKVTEIGEITYKDGEVVGYQTTITAFPDDTGNTHYKYIKGA* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0014 cloud direct high 551 0.998 GCA_003943465.1_01443 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 67692 68027 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 13212 13547 GCA_003943465_1_6_57 GCA_003943465_1_6_57 - 112639 . PDB:2LFP_A tail-completion-protein MIEIIIKKYLDGHLDVPSFFEYEAEAPNSFVIIQKTGGKERNHSGSATFAFQSYGPTMQKAAELNVKVKQAVKGLIELDSISGVHLNSDYNFTDTETKRYRYQAVFDINYY* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0015 cloud direct high 335 0.997 GCA_003943465.1_01444 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 68028 68264 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 13548 13784 GCA_003943465_1_6_58 GCA_003943465_1_6_58 - 112639 . Uniprot:A0A0C5ADH8_9CAUD type-I-neck-protein MASMKVKLNGAGVGALLKSREIQNLLNQEATKIRSRCGPGYEQDSYVGKTRANAMVYPKTYQAKKDNLLNNTLLKAVR* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0016 cloud direct high 236 0.996 GCA_003943465.1_01445 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 68257 68595 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 13777 14115 GCA_003943465_1_6_59 GCA_003943465_1_6_59 - 112639 . PFAM:PF10665.8 Minor-capsid-protein MGRIKGITVILIDKVKTGQDDFGHSVFEDREIEVENVLVQPTSTDDKVSQLNLTGKVAVYTLAIPKGDTHNWEDREVLFFGQRWRTFGIPTEGIESLIPLDWNKKVTVERYG* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0017 cloud direct high 338 0.997 GCA_003943465.1_01446 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 68582 68977 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 14102 14497 GCA_003943465_1_6_60 GCA_003943465_1_6_60 - 112639 . PFAM:PF09355.9 head-to-tail-adaptor MGDFATVEDLETLWRLLKSDERKRAEALLKIVSDSLRVEAKKIGKDLDVLVAEDSSFASVVKSVTVDVVARTLMTSTEQEPMTQFAESALGYSVSGSYLVPGGGLFIKDSELKRLGLKKQRFGVMEIYGTD* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0018 cloud direct high 395 0.997 GCA_003943465.1_01447 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 68983 69213 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 14503 14733 GCA_003943465_1_6_61 GCA_003943465_1_6_61 - 112639 . PFAM:PF08198.10 Arc-like-repressor MEYINKETLVTIETDCKLLGDWVPAAEFTKSQEGQADDSENWTVPELKSKLDELGVEYSDKAKKAELLALLEAHKE* phrogs_hmm hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0019 cloud direct high 230 0.996 GCA_003943465.1_01448 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 69215 70105 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 14735 15625 GCA_003943465_1_6_62 GCA_003943465_1_6_62 - 112639 . PDB:3JB5_B Major-Capsid-protein MPTLQTGDLFPVETVQDIFSKVKGHSTLAKLTTQEPIPFSGTETFVFNLEGNAEIVGEGSPSNAGSATMKPKVIKPVLVTYQARVSEEFVNCSEEKQLSYLKSFIDGLSKKVAQAIDIASFHGLEPKSMTDASFKSTNSFDGLITGNVVTYEADKIDENIDTAVATITANDCEVNGIALSPAAGAALGKIKVNGVVQYPEYRFGQNPGSFYGMKSDINKTLTTVASSAKKDHVIVGDFENAVKWGYAEEIPLEIIKYGDPDGAGRDLKRYREVCLRTQVYVGWGILDEQAFARVEA* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0020 cloud direct high 890 0.999 GCA_003943465.1_01449 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 70110 70574 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 15630 16094 GCA_003943465_1_6_63 GCA_003943465_1_6_63 - 112639 . PDB:6B0X_d Major-Capsid-protein MRMSEFKPITTQEEFDAAIKARLSREKEKYADYDQLKSRVEELEKENVGLQSTIEASNKSKADADKQLEDLQNQIAGYETASLRTRVALQHGLPYDLADRLQGTDEESFKADAERLAGFMKKSQPTYPVGTNEPSSIDEKDAALKGMLHKMRGE* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0021 cloud direct moderate 459 0.987 GCA_003943465.1_01450 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 70649 72061 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 16169 17581 GCA_003943465_1_6_64 GCA_003943465_1_6_64 - 112639 . PFAM:PF03354.14 Large-Terminase MARKKLGNQNPTQSVILKYVKKNSKAKEAIELYERTGLSCYAWQKNLLLPMMAIDKNGLWVHQKFGYSIPRRNGKSEILYILEIWGLHKGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEDFNSIRAKGQERIELYSTGGVVQFRTRTSNGGLGEGFDMLIIDEAQEYTTEQESALKYTVTDSANPITIMCGTPPTPVSSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAELGEDKLDHNIQRLGFWPTYNQKSAISETEWNELKVDDVPELSGKLSVGIKYGQDGTNVALSIAARTKDGRFFIETIDCQSVRNGNEWMVAFLRQADVAQIVIDGASGQKILDEELKDYRIKNVILPTVKEIIVANALWEQGIYQKTICHAGQPSLSKVATNCDKRNIGSNGGFGYRSHFDDMDISLMDSALLAHWACATTKPKKKQKISY* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0022 cloud direct high 1412 0.999 GCA_003943465.1_01451 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 72116 72346 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 17636 17866 GCA_003943465_1_6_65 GCA_003943465_1_6_65 - 112639 . . hypothetical protein MGNTIDFSERKSSIERGASVKEILVENFEASPNYSSVLVISLDKNGEVNLGYSWESSLQALGMLEVAKNYILNDIN* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0023 cloud direct high 230 0.996 GCA_003943465.1_01452 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 72398 72589 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 17918 18109 GCA_003943465_1_6_66 GCA_003943465_1_6_66 - 112639 . 4A54_A EDC3, MRNA DECAPPING COMPLEX SUBUNIT MELRKFNNKVVRITDIDGQTFEGICLYEDKDVYDEEYDGLSVKSGTRWTKLFEDEIKEVEIIA* hhsuite_tools hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0024 cloud direct high 191 0.995 GCA_003943465.1_01453 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 72589 73815 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 18109 19335 GCA_003943465_1_6_67 GCA_003943465_1_6_67 - 112639 . PFAM:PF06152.10 minor-head-protein MVKDIVPELLTKIQTEFEEARLDSEVLKSLLSKLESKSAGYLDANDYAIELGEILSKVLRSSVSPSNLPDGKMYYNIAKRLLTETLGRNFELISGYAQQVQKNLNEEAKIGLRVQVPELNQDRITGLVNRISSEAEFSQIAWILKEPIVNFSQSIIDDSIQKNAEFQKKVGLAPVIERHSTGHCCDWCQSLVGKYLYGEEPLGFYRRHQRCQCTIDYHPKNGKQQNSWSKKWSKESADVLERRKQQNIDVRDNNRKVDIREYKKIVEILGPQNAPISLAQFQELKYNDSERYERLRDVVYIQEKFKNGTWLDKINPEKQARHIQSTSLTGKSYFYDHVDVNALYDKYKMTGFLETSRKGAQTSNEKVDLFEDRPLGIDVYTGKPVNAMTIKYSKTGAHLIPTYYERGD* phrogs_hmm hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0025 cloud direct high 1226 0.999 GCA_003943465.1_01454 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 73763 75076 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 19283 20596 GCA_003943465_1_6_68 GCA_003943465_1_6_68 - 112639 . PDB:2JES_G Portal-Protein MEIRGIDYLRRKLASCRSRVNLRYKHYAMQYQEVPIGITIPPNVRAQYRATLGWTAKGVDSLADRLVFREFGDDVFNVTKIFDRNNPDIFFDSAILAALIGSCCFIYISKGEDDEVRLQVIEASNATGVIDPITGLLVEGYAVLARDDYGQATLEAYFEPNATHFIPKDGRPYSISNPTNIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILGLDPDAEPLEKWQATVSSLLTISASDNGEKPNVGQFSTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGFLNVAYVATCLRDDFQYARSQFVRTKVKWEPLFEADANMLTMIGDGAIKLNQAVPGYVDGETIRDLTGIKGAENPVPAPIEKEVNDGQGYRAGVVDENSDGI* hallmark_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0026 cloud direct high 1313 0.999 GCA_003943465.1_01455 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 75309 75647 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 20829 21167 GCA_003943465_1_6_69 GCA_003943465_1_6_69 - 112639 . COG1403 5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms]. MNLPRPDRNGPHRVAFEKNKNIILKTRNTCGICGLAVDKSLKYPHPLSPVIDHIIPINRNGHPSDINNLQLAHWQCNRQKSDKLYADSRAESLKVVGNRNLPQSRDWTKYRA* mmseqs_cdd common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0027 cloud direct high 338 0.997 GCA_003943465.1_01456 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 75869 76435 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 21389 21955 GCA_003943465_1_6_70 GCA_003943465_1_6_70 - 112639 . CDD:cd01192 site-specific-tyrosine-recombinase MKKVEPIRELDDIERMKDFLKSKSERNYVLIMCGLYSGMRISDIIPLQVKHVMSDRIEVTEKKTGKVKRFAINPELRKALNHYIKTNELQDYDYLFPSKKKVRTDGVRIAHIGRVAAYQILKQAAEHIGLKNIGTHSMRKSFGYHHYRRNQNVAILMELFNHSSPDITLDYIGIKQDELDDSMMNFSY* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0028 cloud direct high 566 0.998 GCA_003943465.1_01457 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 76548 76973 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 22068 22493 GCA_003943465_1_6_71 GCA_003943465_1_6_71 - 112639 . TIGR01637 phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions] MPFFPEINEAKTKENAKKILKGYPRWRRVANDKNGQKVTTTYSFMPRNPGSDTTSQVEKLAIRKVDAELELDAIEQAVSELHDPYYRRIIYEKYLVWHRKKDETIYNELAISESSYYEILDKALLAFAELYRNGEQVEIME* mmseqs_cdd common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0029 cloud direct high 425 0.998 GCA_003943465.1_01458 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 77005 77199 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 22525 22719 GCA_003943465_1_6_72 GCA_003943465_1_6_72 - 112639 . . hypothetical protein MNKRIKKKAKQALLREQEKLNQELAKLSPEELARAVKQVFKSMARTLASIFEGLAAFFKGFDKP* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0030 cloud direct high 194 0.995 GCA_003943465.1_01459 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 77171 77317 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 22691 22837 GCA_003943465_1_6_73 GCA_003943465_1_6_73 - 112639 . . hypothetical protein MNGYEFMAQHPYLTSFIAIMIAITVISTVESIAKIWRKPDEQKNQEES* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0031 cloud direct high 146 0.993 GCA_003943465.1_01460 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 77314 77505 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 22834 23025 GCA_003943465_1_6_74 GCA_003943465_1_6_74 - 112639 . . hypothetical protein MRIMIDGEFQAFLTFMFHFIMIDWIWKFLEINIAGKENGNLPDSILLVLLCLYITWILNRRTK* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0032 cloud direct high 191 0.995 GCA_003943465.1_01461 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 77620 78006 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 23140 23526 GCA_003943465_1_6_75 GCA_003943465_1_6_75 - 112639 . . hypothetical protein MTKLIGFGRCLGKTTMAILESHATGSRILVANQKMVENTFRMAKELGYTIPYPICVNDLVRTPHAYSSEEHFIIDNVEMVLQEMLYNKIDTITFDNRTIDPEDRYREEIRTLKQEVDACYKEKRKTRK* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0033 cloud direct high 386 0.997 GCA_003943465.1_01462 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 78019 78210 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 23539 23730 GCA_003943465_1_6_76 GCA_003943465_1_6_76 - 112639 . PDB:1Z9F_A Single-stranded-DNA-binding-protein MKEKTYEDNQQGQRVYVTEVVADSFQLLESRNKSANHSSMDEQMPPDFGNNNPMDISDDDLPF* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0034 persistent direct high 191 0.995 GCA_003943465.1_01463 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 78221 78652 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 23741 24172 GCA_003943465_1_6_77 GCA_003943465_1_6_77 - 112639 . . hypothetical protein MTKTIEIPDWCSMWGRKDERYGSLEELKELLLYKRIVKWDKDFLLLEDGTKVTIEMSESDCCASAGGEFKNVTLDAVITDVKIGEPTKFDNGDGTTCENTVTIYHNQNPIASAECEADDGNGGYYYSVGSLVIGKIHFPVVEA* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0035 cloud direct high 431 0.998 GCA_003943465.1_01464 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 78698 78976 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 24218 24496 GCA_003943465_1_6_78 GCA_003943465_1_6_78 - 112639 . . hypothetical protein MKKLGIILGTVFVIVVSPFVVQYGWNEIITTIVPVGKITVWQALGMDALLSFIWPVLSSKKESEEDYSYAVKSSISKIIVCAFLIWLASLFI* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0036 cloud direct high 278 0.996 GCA_003943465.1_01465 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 78973 79281 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 24493 24801 GCA_003943465_1_6_79 GCA_003943465_1_6_79 - 112639 . pfam07116 Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown. MREHSIYIFSIVVLLAILMAAIIKINRINERVEQLEARKLITIHRADNAGAEMHGRITDKEVIDGRYTVTAGPYGKFLVTKEQYDNLQVGDEIPDYLRGTGR* mmseqs_cdd common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0037 cloud direct high 308 0.997 GCA_003943465.1_01466 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 79278 79769 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 24798 25289 GCA_003943465_1_6_80 GCA_003943465_1_6_80 - 112639 . PFAM:PF03819.16 MazG-like-pyrophosphatase MNSITLEEKVEQWFVERNLHEANPVKQFEKLMEEAGELFEGIAKGKNELIYDALGDIQVVLIGLEQQIRNGAEIEATAQELELLLMVSSLGNLAQKLYKHVFHKETKQPLIKPDLMLLHSAIHALALYNETSADDCLALAYQTIKHRKGKMIDGVFVKEEDLT* phrogs_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0038 cloud direct high 491 0.998 GCA_003943465.1_01467 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 79762 80559 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 25282 26079 GCA_003943465_1_6_81 GCA_003943465_1_6_81 - 112639 . PDB:4U7P_B Adenine-specific-DNA-methyltransferase MIIREMVVWALFDSGNGSYFKGAKVLNRSGGANIDIYPIGKDVENKNNHFINLDLADYGRLFGDNTLFGELDKLPKPDLIIASPPCESWSNASAMENGNACWKRNDVSDCLFAPQVRPSPFTIRGNQDYESAYINYQYDRQFLKRINGELTAFNTIEIIRKYRPQFWVIENPAADRLWPYIEDIIGFKIPYKNLARYNNYDYPLQKRTIFGSNIELNLKNKIIKQDIEWKNFSKSYNERSNIPKKLVIEIFEKVYKEFSKEKKDE* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0039 cloud direct high 797 0.999 GCA_003943465.1_01468 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 80556 81374 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 26076 26894 GCA_003943465_1_6_82 GCA_003943465_1_6_82 - 112639 . PDB:4M4W_K Replicative-helicase MDFKNFEARQVLDETCEVHGCQLWLTKMPIKGKLEEIKQCPECTKAAISLFEKRLIETSEVQSKLADTYAVFERDSIISDKLRDKTLRNYEITSDIDQEAVNFVKRLEHSYAKGETGNAIITGPSGVGKSHLTYGLAAYLNEQFKSYDEPKSVLFVSVVRLFSLIKESFKVDNGYSESKMIKLLTDVDFLFLDDLGKESRKADARSNEWAHRVLYEILDNRSNTIINTNLTSEEIKALYADDFGNGALSSRIFEGATGRCFVYPSGMKDRRY* rep_hall_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0040 cloud direct high 818 0.999 GCA_003943465.1_01469 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 81374 82120 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 26894 27640 GCA_003943465_1_6_83 GCA_003943465_1_6_83 - 112639 . PFAM:PF09681.9 phage-replisome-organiser MAQRRMFSRKITETDRFLEMPLSSQALYFHLNMGADDEGFIDKAKTIQRTIGASDDDMKLLIAKGFLIPFDSGVVVIRHWRIHNYIQSDRFQSTLYQSEKAQLEYDKSKTASLKPIGNCIQNVSETETQVRLSKGSLDEDSLTTYPTVSDNEEEDIPYKEIISYLNEKANRNYRPNIQKNKTLIKARWSEGFRLDDFKHVIDTTVKDWSGTKYEKYLRPETLFGSKFEGYLNQAPRTKKEIIDERLGF* rep_hall_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0041 cloud direct high 746 0.999 GCA_003943465.1_01470 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 82121 83449 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 27641 28969 GCA_003943465_1_6_84 GCA_003943465_1_6_84 - 112639 . PDB:3BGW_F DNAB-Like-Replicative-Helicase MDDLKILPHDIQAEQSVLGSIFINPDKMIEVIELLKPDDFYRPAHKILFKAMLGLFDSGEAIDIVTVKSELEASNELDLVGNVSYLAEIINAVPTSSNAEHYAKIVAKKSRLRSIITNLSDSIGNAYDEDMDIDEIIAKAEKSLLEVSQSSNKGSFRPIHDVLLENHSKIEERSNNTSEITGIESGFSDFDKLTTGLHEDNLIILAARPAMGKTAFALNIAQNVATKANQPVAIFSLEMGAESLVERMLSAEGAIPNHHIRTGSLSTDEWERLVYAQSRLAEAPIFIDDSAGIRISDIRARARRLAQETSGLSLIVIDYLQLITGRKTDNRQQEVSEISKQLKIIAKELKVPVIALSQLSRSVEQRQDKRPIMSDLRDSGSIEQDADIVAFLYRDAYYQDKTDDQPESNLTELLIKKNRHGGLGTVKLYFHKEYTKFSSVEE* rep_hall_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0042 cloud direct high 1328 0.999 GCA_003943465.1_01471 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 83449 83676 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 28969 29196 GCA_003943465_1_6_85 GCA_003943465_1_6_85 - 112639 . . hypothetical protein MNNLQIIAVGTLFSVTLIESILMNIRLKKALKRKLTTSEISPQRSYQKGFVDPKTGRRVDIDPMTRKETFVDRGR* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0043 cloud direct high 227 0.996 GCA_003943465.1_01472 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 83755 84012 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 29275 29532 GCA_003943465_1_6_86 GCA_003943465_1_6_86 - 112639 . PFAM:PF09035.9 Excisionase MDNVLVSLSDWIKSIIKDTITRLVEIEKDSDHYPELMDVGTTCDFLGIKYDTFSDNYRYLKGFPKELPGKKWSKRAIKEWLSNQI* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0044 cloud direct high 257 0.996 GCA_003943465.1_01473 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 84027 84740 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 29547 30260 GCA_003943465_1_6_87 GCA_003943465_1_6_87 - 112639 . PFAM:PF10547.8 P22_AR-repressor-domain-protein MNEIFNFHGQEVRTLTIDDEPWFVGKDVADILGYAKPLDAISRHVDEDDSVKYGLTDNLGRTQNTIIINESGLYSLILSSKMPQAKEFKRWVTSEVLPAIRKQGGFIREDLDEDAFIALFTGQKKLREQQATMLEDIDYLKSEQPIHPSYAQSLLKXRKARVVACLGGIDSPAYADKIFAQSVFRQAEIDFKDHFNISRYDLLPKKFAEAALAYWMTWEPSTNTKMKIMKLNSFDEV* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0045 cloud direct high 713 0.999 GCA_003943465.1_01474 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 84758 84961 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 30278 30481 GCA_003943465_1_6_88 GCA_003943465_1_6_88 - 112639 . PFAM:PF10078.8 transcriptional-repressor MSKELKKIKAKIKTRLIELDMTQTELAKQVPVASSVISELLRYGKGSDTVKEKVSEVLGIENPWAKI* phrogs_hmm hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0046 cloud direct high 203 0.995 GCA_003943465.1_01475 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 85014 85544 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 30534 31064 GCA_003943465_1_6_89 GCA_003943465_1_6_89 + 112639 . . hypothetical protein MLSDIINIISIIASTSVSIISIYYSHKAVKIASEANKLTAEVTEEANRPVIVAYLDTIEINDFHKYLVIKNFGNTSATILDLKFSKDIDTLGFNMSSLVGYTIAPSQKFMHILDNSFKETIVVNIIYQNSAGKTYDEVCLVKTDATSKLLWVGSSDTDKTRKLLKNSAEAIIKSLK* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0047 cloud direct high 530 0.998 GCA_003943465.1_01476 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 85545 85706 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 31065 31226 GCA_003943465_1_6_90 GCA_003943465_1_6_90 - 112639 . . hypothetical protein MEMEKEYLTEEDAAKIKKELLKVLRSHDLNSGLAKAVLTDTIETIENYSQLPE* . hypothetical_protein C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0048 cloud direct high 161 0.994 GCA_003943465.1_01477 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 85995 86345 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 31515 31865 GCA_003943465_1_6_91 GCA_003943465_1_6_91 + 112639 . PDB:1PRA_A Repressor-protein MFFTFEKIKELADKQGISLNKLEENLGFSRNTIYNMKKSTPNIERVSKIADYFNVSTDYLLGRTDNPIIAGEKASKIEIDLKKDAAESFFYDGHELNDEDIDLISSILEARMRNRK* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0049 cloud direct high 350 0.997 GCA_003943465.1_01478 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 86355 86738 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 31875 32258 GCA_003943465_1_6_92 GCA_003943465_1_6_92 + 112639 . PDB:3DTE_A IrrE-protein MTTPEQVCSEQGIDLVYFDGRDSQNKGIYNQHHNIIAVDSYLDDIEKKKVIYHEIGHKEHDPGQYQRRREEYELQADRNMIHYLLKEELETMDDTANFNYIHFMEKYNLKSITNEIMVKEEYLALLN* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0050 cloud direct high 383 0.997 GCA_003943465.1_01479 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 86754 87665 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 32274 33185 GCA_003943465_1_6_93 GCA_003943465_1_6_93 + 112639 . pfam08797 HIRAN domain. The HIRAN domain (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. The HIRAN domain is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this domain functions as a DNA-binding domain that probably recognizes features associated with damaged DNA or stalled replication forks MKIGMRSPSLKKSLKARTTSKWKRQTKKALIPGYGQKGIGWLKNPKKAMYNKIYHKTTFGLSDLLKPSKKRKKKVVTKNQQSILTSNGKKYTAKDHKEAGIVLMVLGAIFLFLFPPIGFFLFITGFISYIIGRLTIKREKKKKIENYSPQIDTIVFHDNFLLMGTNYHKEEAEIAADFLSKGVHYFGKDNKSLKSYMLETYKPVYKYNKLKTVDVQLLPEPSNPHDKNAVKVLVNNIFVGYLPAVIASQISSYIANPNYRYDAILTGRGGPYKTLNIETERVVSYEKELTYYLDLTIWRLAKK* mmseqs_cdd nonviral_gene C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0051 cloud direct high 911 0.999 GCA_003943465.1_01480 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 87840 88988 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 33360 34508 GCA_003943465_1_6_94 GCA_003943465_1_6_94 + 112639 . PDB:1XO0_A Recombinase MKYIKTKYPNIYYYETAKGKRYYVRRSFFFRGKKREKSKSGFTTLPQARAALVELEQQIQDQELGINTNITLDQYWDIYSEKRLSTGRWNDTSYYLNDNLYKNHVKPKFGSTLLKNLDRNEYELFIAEKLKNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAANKKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDISQNDSGRAILHLRDSRSNQTLKGKGGLKTRESERYVCLDDIGTELVYYLIDEAAKIKRKLGIIKDQQKDYITINEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVYMTDRYNQVEDELAEATTDLFLNHIR* common_virus_hmm common_virus C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0052 cloud direct high 1148 0.999 GCA_003943465.1_01481 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote cenote CDS 89419 89934 GCA_003943465.1 RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465.1_RJPR01000006.1 GCA_003943465.1|RJPR01000006.1 GCA_003943465_1_6 GCA_003943465_1_6@C6 34939 35454 GCA_003943465_1_6_95 GCA_003943465_1_6_95 - 112639 . cd01043 DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic. MTQVKHGAAADVATFTNQNSLPKTKAVLNQVVSDLYTARIALHQVHWYMRGAGFMVWHPKMDEYMDTIDETLDEVSERLITLGGKPYSTLTEFIQHSKIEEKAGEFSKNVEESLERVIEIFRYLTDLYQEALDVTDEEGDDVTNDIFVGAKADLEKTIWMLTAELGQAPGL* mmseqs_cdd nonviral_gene C6 35454 54481 89935 GCA_003943465.1|RJPR01000006.1@region_54482_89935@tool_cenote_CDS_0053 persistent direct high 515 0.998 GCA_003943465.1_01483