core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	108665	108886	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_113	222	-1	0.342	11	AGGAG	GENOMAD.196220.VC	1.561e-11	60	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	113	1	1	222	MNKKTTFLVAENDFLSGVSRVLDIASTRNKRVYNTSRSGDEADKKAIFNDWFMIGNDIRGAYEQFKKEVKAQA	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0001	cloud	direct	high	222	1.0	GCA_003943815.1_00719
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	109369	109539	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_114	171	1	0.409	11	AGxAGG/AGGxGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	114	2	705	875	MKQLAVEAVGHLYLILKSRRCIIKSRKKHGFPAQKALELWESHASFLSHKSPQIRF	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0002	.	unmatched_CDS	none	0	0	.
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	109653	110072	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_115	420	-1	0.402	11	AGGAG	GENOMAD.017137.VV	5.451e-68	226	0	0	0	1246	Caudoviricetes	NA	NA	PF05263;TIGR01636;COG2739	phage transcriptional activator, RinA family	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	115	3	989	1408	MTPEQVKEKLEGVKWINKEIEGLYLELAVLESGIIKKQELSTTRVQTSRVNTAENNLISVLKLKEDTLQRIERLTEERMEISRLIDKLANPLERSVLRLFYLNVLDAWEVAEEIDKSKTTVYIIRQKAIEHLAGIVNGD	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0003	cloud	direct	high	420	1.0	GCA_003943815.1_00720
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	111565	111981	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_116	417	-1	0.362	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	116	4	2901	3317	MNKKTIITKMLALKGAISNLYGKIEEIQNNQFLSAEGKENELETLKFKYEAWYAGYYDDLKKIADNLLPDKEAKRAEAEVKALTDSGYQVAVQNAVKLFESGALAVSTGKALIDHYKDDRTTLELFRNALGGIFGNGT	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0004	cloud	direct	high	417	1.0	GCA_003943815.1_00721
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	112183	112338	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_117	156	-1	0.378	11	GGAGG	GENOMAD.096366.VV	8.711e-08	48	0	0	0	1246	Caudoviricetes	NA	NA	PF13128	Phage-like element PBSX protein XtrA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	117	5	3519	3674	MDDLVELLKQGFILYQKNGKIEAEAPPTFGSVALHFQDGRFSYLQRSETKK	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0005	cloud	direct	high	156	1.0	GCA_003943815.1_00722
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	112877	114331	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_118	1455	-1	0.396	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	118	6	4213	5667	MNSDEIVNKIIEDDHQQVSSEMVNLTEARETNEGHNSLDLAKKPRGDGFAVSLDNLKKILSGDSKLKGAIQYNTFTYEIDVTRPIKLNGRTLSGAIDDLIIREIRAYIATKYKIDYKKPDIADILEVVAGEHSYNPLKNYLESCESEYKELVNQRDPFDILRCYLNIEDNDYNRIILDLFFRGAVAKVFNPSIKFDFVLDLTGRQGVGKTQFFEGLFTHKYFTTVETFTDKDDKARMVRNWCVFDDEMVASKKASFSELKKFITETKLEFRPPYASSDRRLPKSFIIVRATNDHDYLNDLTGERRFLVAEVHKDTEYKDRKWTEKDRRHFWGAMVAAWRANKVLTLTDEQEKLVNEVRSRYKFVDELAEDLERYLDTPYPKGMYQYPEIDRTRRYYIHDMINHGYYMGADGTEIPLDIEKYGELVERDKVAVNLFFTEVYLNNSPNPKDKNKVKKIMQNKEGWESRKSLRIGKTIKRGFAKVKE	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0006	cloud	direct	high	1455	1.0	GCA_003943815.1_00723
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	114324	114839	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_119	516	-1	0.388	11	AGxAGG/AGGxGG	GENOMAD.075584.VV	1.368e-98	316	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	119	7	5660	6175	MRMIELTISSKKMPLFSFLKHAPTQVWKNGEHYKLIYYEPIGEGLTDFHYKGLYVAVRDEKGRLEGWELARSLDIALASSELLTILKKLEANRLTERRQGLGLELKGWIFDLICNGIYTRYETSLFVRSLFVNGYSFSQSVDLFSAIVKRKDLAGYFLEVAKVFYKEVAFE	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0007	cloud	direct	high	516	1.0	GCA_003943815.1_00724
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	114850	115116	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_120	267	-1	0.401	11	GGA/GAG/AGG	GENOMAD.177906.VP	3.236e-33	123	0	0	0	1246	Caudoviricetes	NA	NA	PF09035;COG3311;TIGR01764	Predicted DNA-binding transcriptional regulator AlpA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	120	8	6186	6452	MQLLSREAELELLEKVGDHLEKRLELEKQHNDGWDLIARADLLNKLRISGTTLNNWEKHGLKPYQSPFENSKKIYYRKTDIYNFLAVD	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0008	cloud	direct	high	267	1.0	GCA_003943815.1_00725
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	115131	115334	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_121	204	-1	0.441	11	GGAG/GAGG	GENOMAD.068563.VV	1.15e-33	123	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	121	9	6467	6670	MNELDLTNTQAVIFMVXLIVLLVYLNHRDRKKSAQMERESKQTIETPSEVLNPCYGRYIQLAGKIHN	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0009	cloud	direct	high	204	1.0	GCA_003943815.1_00726
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	115336	115536	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_122	201	-1	0.418	11	AGGAG	GENOMAD.072874.VV	2.194e-34	125	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	122	10	6672	6872	MTLDLDNMTQAEFDKQMAEIKERHPNLFRFITDFVDRKVSTEEVDDFLKMELSDQVDYIKNYKARA	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0010	cloud	direct	high	201	1.0	GCA_003943815.1_00727
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	115533	115985	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_123	453	-1	0.375	11	GGAG/GAGG	GENOMAD.083515.VV	1.764e-85	277	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	123	11	6869	7321	MIETTYENLTRRIDRISAEMREISEKNDLGRLSLLASQTKSIKEDLSRLLWIELPELNESHKIAAVTKSTTGMLFHPGIFEMDAMRQAFFKRQAKHFFDNEAEQQEYMEHAEKEYLEATITLKDILFNSKNDTRKVSKDHLIEKFEEAMQ	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0011	cloud	direct	high	453	1.0	GCA_003943815.1_00728
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	116318	116506	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_124	189	-1	0.402	11	AGxAGG/AGGxGG	GENOMAD.081367.VV	1.64e-20	85	0	0	1	1246	Caudoviricetes	NA	NA	PF06892;TIGR00721;COG3620;K22299	DNA-binding protein, Tfx family	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	124	12	7654	7842	MLITTKLAEKVRVKRAKAQQTKKAVAEELGIKPQTYTKVENGDYDAPKRIYEAVMNWLVEDL	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0012	cloud	direct	high	189	1.0	GCA_003943815.1_00729
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	116663	117253	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_125	591	1	0.332	11	3Base/5BMM	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	125	13	7999	8589	MNRIKELRENIGLSQEKLAKNLSINLRTLQRWENDETAIRKKNAEKIANYFNVSVPYLLGYTAEIDASSNWGKILSISSRDPDYEAVKAGKSIFQSLTPPNSDKILENNIFEYYVNFYKDGKTKNKHNLSEEDLEKFFGEQHISHSSSKRLNNFYQALAFLEAEEAAVLSCFSLLSKEKKAAVYEILAGLITPDNK	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0013	cloud	direct	high	591	1.0	GCA_003943815.1_00730
GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	genomad	CDS	117427	118590	GCA_003943815.1	RJNA01000004.1	GCA_003943815.1|RJNA01000004.1	GCA_003943815.1_RJNA01000004.1	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590_126	1164	1	0.410	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad	GCA_003943815.1|RJNA01000004.1	126	14	8763	9926	MNITEYKKKNGTTVYRASVYLGVDKLTGKKARTTVTASTKKGVKIKAREAVNAFAANGYSVKEKPTITTYRELVALWWESYKNTIKPNSQQSMEGIVRLHILPVFGDYKLDKLTTPIIQQQVNKWADKANKGEKGSYANYSFLNNINRRILQYGVTMQAIQHNPARDVIIPRKQQNKEHKVKFFSNQELKQFLDYLEDLDQSSYENFFDYVLYKTLLASGCRIGEALALEWPDIDLKKGTISISKTLNRYQETNTPKSKAGLREIDIDKATVSLLKQYKKRQQVQSWQLGRSEGIVFTPFTTKYAYACLLRKRLQSHFKAAGVPDISFHGFRHTHATIMLYAGIEAKDLQYRLGHSNISMTLNTYVHATKEGAKKAVSIFEAAISNL	GCA_003943815.1|RJNA01000004.1|provirus_108665_118590	GCA_003943815.1|RJNA01000004.1@region_108665_118590@tool_genomad_CDS_0014	cloud	direct	high	1164	1.0	GCA_003943815.1_00731