core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	65509	65685	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	1	177	GCA_003944005_1_4_67	GCA_003944005_1_4_67	+	252317	.	PRK07597	preprotein translocase subunit SecE; Reviewed	MKFIRDTFQVLKDTTWPTRKQSWVDFISVMEYTAFFVVIIYLFDLFVTRGLVRLLNIF*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0001	persistent	direct	high	176	0.994	GCA_003944005.1_01050
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	65831	66367	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	323	859	GCA_003944005_1_4_68	GCA_003944005_1_4_68	+	252317	.	COG0250	Transcription antitermination factor NusG [Transcription]. 	MDSFDKGWFVLQTYSGYENKVKENLLQRAQTYNMLENILRVEIPTQTVQVEKNGKTKEVEENRFPGYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRQILISMGQTVQEFDIHVKVGDTVRIIDGAFADYTGKITEIDNSKVKMIISMFGNDTVAEVNLSQIAEL*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0002	persistent	direct	high	536	0.998	GCA_003944005.1_01051
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	66321	66521	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	813	1013	GCA_003944005_1_4_69	GCA_003944005_1_4_69	+	252317	.	.	hypothetical protein	MTRLQKLISAKLQSYNSLKNIKRVGKNFPLFLYAILAYLQVLIFSLRAYALDNDRFPVIENEYIIL*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0003	persistent	ambiguous	low	48	0.239	GCA_003944005.1_01051
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	66574	67371	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	1066	1863	GCA_003944005_1_4_70	GCA_003944005_1_4_70	+	252317	.	.	hypothetical protein	MKTIFENQEVKLNRKNGSTVIVRNDGFSYLDAKSEKKNLNISFDKVSTILSLRYCNSNSSYNLIFRDQNGKNMAEFDTDTTIYNNGHNILETKAILLAFAASKLTKDFPNNLRDLDIILAFSMKEKEIRIASGIIYGSKHKISIEDIRRVQCVTNGTISNLALYKSDKKTFWDIPDMRVPCNEITLPLFEAIVTKNIGKGIDFSRGNGFDQKTSEFMIIRYMDANFFVNSDGTLDKEWQKQIYDRMSAYKYDLATLLEGYCRLRV*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0004	persistent	direct	high	797	0.999	GCA_003944005.1_01052
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	67705	68775	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	2197	3267	GCA_003944005_1_4_71	GCA_003944005_1_4_71	-	252317	.	PDB:1Z19_B	Integrase	MASIRKRGKYFEYRVVYHDSLGERHEASCGGFKTKAQARAAGQKREVELRNSPMSNNDVTMIDYYKAWAQLYKKPYITKKTWNSYKQTENHIIKYFGQSKLKDMTPVRYQEFLNEFGAKYAQDTIERTHYHIKSAVKIAVRDQLIPSNFTEGAVVKSQKEKKPEAESYLEEDEYFYVISKTQENPQYISHMTLYILAISGMRFAEAMGLTWDDIDFKNQVFRVENTWDYSDTEDFSETKNEQSIREIPFNDNIAKVLKNYKENYWRENKQGRVLFGASNRATNTALKRMVKREVHPHTLRHTYASYLIFKEVPVASISKLLGHKSILITLKVYAHQFEKMKEKHHSEVRNILSEIH*	common_virus_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0005	shell	direct	high	1070	0.999	GCA_003944005.1_01053
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	69061	69825	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	3553	4317	GCA_003944005_1_4_72	GCA_003944005_1_4_72	-	252317	.	PFAM:PF02452.16	antitoxin-mazE-like	MYKENPYFEQTKQNYIKVEKLYKRGKLKHTSSKYKFLAPAVKRQSEQFLFEANTPKRKYWKFDRGALIFVEFGVNIGGELSNNHWAIVLDKNDSPYQKTVTVIPLTSKNHKDAVLIDEVIAESPSLLLDEYVEELHKEVYAYLKYLDSKNALTEQLLLKAFQKYQHHFRNVDIPAKIITNENISNTLSKAKDTTELIEYYQKYIKRSYAKCSSLQTISKDRILKKNKLDPVGKVKVSNNTLDAINRKLKELYLF*	phrogs_hmm	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0006	cloud	direct	high	764	0.999	GCA_003944005.1_01054
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	69840	70580	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	4332	5072	GCA_003944005_1_4_73	GCA_003944005_1_4_73	-	252317	.	PDB:2FJR_A	Repressor-protein-CI	MNILGNSIKEIRKSKKMTQNQLAELTGFKQNTISNHENGNRQLDETDIRKYAKALNVEPQQLFDKASATPTYSASPPTSDTARAISDTVERLEEPRRVIVLDTAKMQLDEQNRAQNDVHEELTEYHVFEKLAAGNGYNYMEDRNYDVVFFNKDIDHDFASWVYGDSMEPKYLDGSVALIKDTGWDYDGAIYAVDWDGQSYIKKVYKEKDGLRLVSINDKYDDKFAKWEEEPRIIGKVVGNFMPVER*	common_virus_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0007	cloud	direct	high	740	0.999	GCA_003944005.1_01055
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	70751	70864	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	5243	5356	GCA_003944005_1_4_74	GCA_003944005_1_4_74	+	252317	.	.	hypothetical protein	MLKRRRKRKDPWLTQPRATVIAAIIALIAVILQLLFK*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0008	.	unmatched_CDS	none	0	0	.
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	70949	71101	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	5441	5593	GCA_003944005_1_4_75	GCA_003944005_1_4_75	+	252317	.	.	hypothetical protein	MDEEEFEKIVTFFSTEQGSAYLKGYIDALSLLTEIMKSLYEKAKSSDSTS*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0009	cloud	direct	high	152	0.993	GCA_003944005.1_01056
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	71251	71577	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	5743	6069	GCA_003944005_1_4_76	GCA_003944005_1_4_76	+	252317	.	.	hypothetical protein	MKDNIDREIIVIEPGYSKEQIKRIIGHYNKKQKEQIKITTFESPKVPESELFKNALLKGVAYGVFMLFFGIPFLLWGVLSNYSTNAANVYGILAFIFTLFVIISLEDK*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0010	cloud	direct	high	326	0.997	GCA_003944005.1_01057
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	71581	72207	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	6073	6699	GCA_003944005_1_4_77	GCA_003944005_1_4_77	-	252317	.	.	hypothetical protein	MQLALVISLVSILMSTYLFVIKHYRELYKIGISNSQAIFDESSKTMFVKITFVNESSLPFTVVGLMVTQDKFQYHLSDWGEFIHKEIKVIHCNNYNRYEIEDKTSDLPIIIAPYSKEARYFAFKFPRTYRHDFFLEIESPQRFLVVPFNPVPDTYPNVAAERKGRVRVIQVHWRQHRIRSIKDFVVSLSHKKTWFLLKLKIKDKFLRK*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0011	cloud	direct	high	626	0.998	GCA_003944005.1_01058
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	72261	72401	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	6753	6893	GCA_003944005_1_4_78	GCA_003944005_1_4_78	+	252317	.	.	hypothetical protein	MDTIAIRENSIRINNQKINGVQAIKIKSTAEKSYAEVYIKLLAKLV*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0012	cloud	direct	high	140	0.993	GCA_003944005.1_01059
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	72549	72749	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	7041	7241	GCA_003944005_1_4_79	GCA_003944005_1_4_79	+	252317	.	.	hypothetical protein	MPSGVVNKKTPASYQVAGGVDFLKINVGKTEITLEVLLPTHASFATNTNFRGVPERELKFPPYSYY*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0013	.	unmatched_CDS	none	0	0	.
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	72975	73121	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	7467	7613	GCA_003944005_1_4_80	GCA_003944005_1_4_80	+	252317	.	.	hypothetical protein	MEDKVIELADWLINQSKTYSEAMIACEKLLKDVAHEIQLRALENKTRR*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0014	cloud	direct	high	146	0.993	GCA_003944005.1_01060
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	73127	73354	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	7619	7846	GCA_003944005_1_4_81	GCA_003944005_1_4_81	+	252317	.	PFAM:PF13744.5	transcriptional-repressor	MTKKQRLKKQFLEPKKRLRAERLKREYTETYMADLIGLKNRKGYSEKEDGLQPFKDYEMAIISRKFGISEAELFF*	phrogs_hmm	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0015	cloud	direct	high	227	0.996	GCA_003944005.1_01061
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	73408	73548	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	7900	8040	GCA_003944005_1_4_82	GCA_003944005_1_4_82	+	252317	.	.	hypothetical protein	MEKENTITLDEVVAQFLTNVIKEADKKDPAAVAAVAELIKAVRDFY*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0016	cloud	direct	high	140	0.993	GCA_003944005.1_01062
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	73652	73849	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	8144	8341	GCA_003944005_1_4_83	GCA_003944005_1_4_83	+	252317	.	.	hypothetical protein	MSNVAVNVVRIEPDAYDAAVKFANENDLKISKVISMFVRYGVENVELKEVDVRTEKFCIGDQVIN*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0017	cloud	direct	high	197	0.995	GCA_003944005.1_01063
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	73858	74220	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	8350	8712	GCA_003944005_1_4_84	GCA_003944005_1_4_84	+	252317	.	.	hypothetical protein	MTVSRDMTELEIKVLNGIKNGASFDLPIQASELRISLGLSKRMLEEVIESLRVNFRQPIIAKRTQPSGYYLPRNEEERQAGLAPYKRQIETEQKNLAAVMAVNLDEFWQRKKPDGNQAQK*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0018	shell	direct	high	362	0.997	GCA_003944005.1_01064
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	74242	74526	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	8734	9018	GCA_003944005_1_4_85	GCA_003944005_1_4_85	+	252317	.	PFAM:PF09035.9	Excisionase	MNDLMNQMLDQFEAGLMDRALKVMHVVTDEKRRYPMELNKSQCSEMLLGTKDTGTFDTRFNCHKDFPRIEGKRDKFPRDEVIDWYHRNWMKTGG*	common_virus_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0019	shell	direct	high	284	0.996	GCA_003944005.1_01065
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	74530	74754	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	9022	9246	GCA_003944005_1_4_86	GCA_003944005_1_4_86	+	252317	.	.	hypothetical protein	MQNQEQIRLIMNWERDHYRLGINYKNKLAKRSVEAVKLELAELSREWDSVTFSVEPKGAMKIEGDKTTIFRKRG*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0020	shell	direct	high	224	0.996	GCA_003944005.1_01066
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	74756	75514	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	9248	10006	GCA_003944005_1_4_87	GCA_003944005_1_4_87	+	252317	.	pfam07852	Protein of unknown function (DUF1642). The sequences making up this family are derived from various hypothetical phage and prophage proteins. The region in question is approximately 140 amino acids long.	MTGFKIGDKVWVKGVINQIDKGNVWDLYISTRENGVWIDSCLDECIPQNDTDEKPRYLRNVLARLRELPEHDREVWLKGIMDEFELDFSHAKWREGYEQGKFDGVVEAEKSKPVIPQFVADWIDYCKENHFTITGAFDPVSEYGIGIAGTFKGSVYKCTRWALDNQNLFARAWLDGYEVEQERRYKAVLPNLYEEENVLHFSQEDEVWYFNHDFNDNVSVDKDSRYHTREELEDAGFGWVFDCEGVEVQEVE*	mmseqs_cdd	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0021	cloud	direct	high	758	0.999	GCA_003944005.1_01067
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	75514	75705	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	10006	10197	GCA_003944005_1_4_88	GCA_003944005_1_4_88	+	252317	.	.	hypothetical protein	MPVFLNTEDLNSPLGSLENTLDIIKNFYNEERFEDMDNAKKLIKDYENAIALLSRVVEKGGAR*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0022	cloud	direct	high	191	0.995	GCA_003944005.1_01068
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	75702	76112	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	10194	10604	GCA_003944005_1_4_89	GCA_003944005_1_4_89	+	252317	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPKFRGRSTVEDDKGKWVYGHLLIDDNRALIINGIIEANDEYVSLEDWCDIDMKTIGQSTGLKDKNGTEIFEGDALKNNDYPNQTFICKHSRLQASFQAESLNGLLTLSLWKDEERDWQVLGNIYENQELVEDDA*	mmseqs_cdd	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0023	cloud	direct	high	410	0.998	GCA_003944005.1_01069
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	76109	76417	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	10601	10909	GCA_003944005_1_4_90	GCA_003944005_1_4_90	+	252317	.	.	hypothetical protein	MTLKDRVENLEALHTVQKRGLANTQLWLVFVSFIMFLLVIGMIAGYGKQQTQIKDLQTELERVTNEQKNVNQRQDVMINKFNQMYYEYQHKKITGKDNFPGG*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0024	shell	direct	high	308	0.997	GCA_003944005.1_01070
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	76506	76760	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	10998	11252	GCA_003944005_1_4_91	GCA_003944005_1_4_91	+	252317	.	.	hypothetical protein	MKWIKFKTRKLTEEELSEYKYMYYKYMWDCKIPEVDEIVLVSDGERIWTEDWVDYDEGLGLEDSDAEGLYWMPLPELPKEMSNE*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0025	cloud	direct	high	254	0.996	GCA_003944005.1_01071
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	76753	76986	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	11245	11478	GCA_003944005_1_4_92	GCA_003944005_1_4_92	+	252317	.	.	hypothetical protein	MSEILGAVLTLVLVFFLGAFINHLDWRKERKRLERQAKEDKRIELEAMYVICAIEHDRRERMRKLAEARKKSPGWNY*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0026	shell	direct	high	233	0.996	GCA_003944005.1_01072
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	77001	77348	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	11493	11840	GCA_003944005_1_4_93	GCA_003944005_1_4_93	+	252317	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGTLIGITGRIQTRIYENQQGQHVYVMEVVADNFQILQNRNNAANSDSL*	common_virus_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0027	persistent	direct	high	347	0.997	GCA_003944005.1_01073
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	77381	77647	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	11873	12139	GCA_003944005_1_4_94	GCA_003944005_1_4_94	+	252317	.	.	hypothetical protein	MYYTKTSNGIEVAKRDIIDDLKDVINRYEFYRDEVRRCYHDMEEYEAKIDLLETQKMDLVEALANKTWQDMRQTAFKRRQARKWRVKA*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0028	cloud	direct	high	266	0.996	GCA_003944005.1_01074
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	77644	78393	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	12136	12885	GCA_003944005_1_4_95	GCA_003944005_1_4_95	+	252317	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MKCELFHDNFQNYKRYGIPKAQLVIADIPYNLGENAYASSPEWYVDGDNKNGESDKAKSTFFNTDVNFNIAEFMHFCSKMLIKEPKEKGKAPCMIVFCAHQQQQMVIDLAKRYGFQKYIPIVFIKKSSPQVLKANMKIVGAVEYALVLYRDKLPKFNNDGQMVLNHFPWIVDQSYPKIHKTQKPVPILKRLIEIYTDKGDVVIDPCAGSGSTLRAALELERQAYGFEIDRFFYKDAKEKMLTSFQASLF*	common_virus_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0029	cloud	direct	high	749	0.999	GCA_003944005.1_01075
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	78466	79395	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	12958	13887	GCA_003944005_1_4_96	GCA_003944005_1_4_96	+	252317	.	PFAM:PF09681.9	replisome-organiser	MSEIKWIKITTDIFDDEKIRLIDALPEHDAILVIWFKILTLAGRQGGNGLLMMNNKVHYTDEMLAAIFNRPITTIRLALQTFEQFGMIEIINGIISLPNWEKHQNVDGMEKAKEQTRKRVARYREKQKQLLENGNVTCNVTVTPCNATDIDIEIDTDREKDKDNIVVIDKQNFIQEIEANLGRGLVKFEFDMINDYLLNQKVSTELFLEAVKIAVANNVRKFNYIARILDNWINQGIRTPEQAYQAQRDFQAKKNNKVMVKNQKAGNNPDWSNPDYKNETSPEKQAELEKQKQELLKRLEKKDGNSKKV*	rep_hall_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0030	cloud	direct	high	929	0.999	GCA_003944005.1_01076
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	79373	79564	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	13865	14056	GCA_003944005_1_4_97	GCA_003944005_1_4_97	+	252317	.	.	hypothetical protein	MAIAKKCDRCGKFHEIYNKNDNSRNINSLVTANADEYNKRYHQKLINLCPNCKDSFFNWLKKR*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0031	cloud	direct	high	191	0.995	GCA_003944005.1_01077
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	79569	80006	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	14061	14498	GCA_003944005_1_4_98	GCA_003944005_1_4_98	+	252317	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MPFFPEINEVKTKENARKILRGYPRWRRVANDRNGQRVTTIYSFTPRNPNFTNNSQVEKLAIRKVDAEIELDAIEQAVSNLHNPFYRRILFEKYLKSTPEKDFSIYQNLAISESSYYDLLDKALIAFAEIYRNGEQVVISGENPE*	mmseqs_cdd	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0032	cloud	direct	high	437	0.998	GCA_003944005.1_01078
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	80114	80680	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	14606	15172	GCA_003944005_1_4_99	GCA_003944005_1_4_99	+	252317	.	CDD:cd01192	site-specific-tyrosine-recombinase	MRRVEPIRDVDDIQRLKDYLKDRNERDYMLIVTGLYSGMRISDIIPLQVKQVTGEHIEIKERKTGKTKRFAINPELRRTLNNYIKNNDLKGYDFLFQSRKRKRADGVRITHIGRVAAYQIIRSAAESIGLQNIGTHSLRKTFGYHHYKKNQNVAILMEIFNHSSPDITLRYIGYKQDELDSSMIDFSY*	common_virus_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0033	cloud	direct	high	566	0.998	GCA_003944005.1_01079
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	80858	81193	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	15350	15685	GCA_003944005_1_4_100	GCA_003944005_1_4_100	+	252317	.	pfam01844	HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	MEMRADRSGPHRVAFEKNKKIILKTRNTCGICGQPVDKSLRYPHPLSPVIDHVIPVNKNGHPSDIANLQLAHWQCNRQKSDKLYAEERAIGSVVIGNRNLPQSINWTSYRS*	mmseqs_cdd	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0034	cloud	direct	high	335	0.997	GCA_003944005.1_01080
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	81297	82568	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	15789	17060	GCA_003944005_1_4_101	GCA_003944005_1_4_101	+	252317	.	PDB:2JES_G	Portal-Protein	MSLKGMSYLRKKLLNYKLRVDMRYKQYAMKYNDISVGITIPAEVRMKYRSVLGWAAKGVDSLADRLVFREFANDDFEANEIFNQNNPDVFFDSAVLSALIGSCCFVYISQGATEIPRLQVIEASNATGVLDPITGLLTEGYAVLQRDDYDNPLLEAYFTEDMTWYYPKNEKPYSIHNPAGVPLLVPVIHRPDAVRPFGRSRITRAGMYYQRYAKRTLERADVTAEFYSYPQKYILGMDPSADAMDKWKATVSSLLRIDKDEEGDKPTVGQFTTSSMTPFTEQLKTAAAGFAGEMGLTMDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGSGLLNVAYVAVCLRDEFHYLRSQFVNTNIKWEPLFEADASTLTMIGDGAIKLNQAIPGFLDGEAIRDLTGVKGSGNVVPALPSEKEAVDG*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0035	cloud	direct	moderate	1208	0.95	GCA_003944005.1_01081
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	82561	83955	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	17053	18447	GCA_003944005_1_4_102	GCA_003944005_1_4_102	+	252317	.	PFAM:PF06152.10	minor-head-protein	MDKDIFPELIKSIQDDFERAYGKSEVVRKSFEALKSKKATYTTVNDFAIEIGEILSKALGASLSADKLPDGKLYYNIAKRLLEDTLGRNYGLVSSYASDVQKQLNERANIHLKTQIPALNQDRIDGIVNRVSSEQDFDDIKWILQEPIVNFTQSIVDDSIEKNAEFHHKAGLQPEIVRKSVAKCCDWCQEVQGIYKYPRVPKDIYRRHQRCRCIVDYDPKNGKVQDVWSKIWRKQKDSDKIKERKGLNKEENISVVRKSALQHGIKVNPIKRSKVKKTEEAIIKAVGGGDQTKGSCSSLALAYIGNKAGFDVLDYRDGKSRTFFASMLNIKNISELPNVHSHVVADTNDFTAVKKLIGQMQDDKEYYLATGKHAAIVRKKEGWFQYLELQAPFEGNGFKPITNAVLKERFGCQRSHSVYGQKLQVPNVLIDSDSLGENEEFQKILGFINTKKGQQNKGDKGYVK*	phrogs_hmm	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0036	cloud	direct	high	1394	0.999	GCA_003944005.1_01082
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	83945	84244	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	18437	18736	GCA_003944005_1_4_103	GCA_003944005_1_4_103	+	252317	.	.	hypothetical protein	MSNNDDFLEELSELANQEDDRIWSESHLDGYSDFYKENEDSKVWWIDKLDAIGEHLFSFDQKKIYNLFVDYPHNMMDKEVEIFDKENPYWKEFLSNRKK*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0037	cloud	direct	high	299	0.997	GCA_003944005.1_01083
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	84352	85770	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	18844	20262	GCA_003944005_1_4_104	GCA_003944005_1_4_104	+	252317	.	PFAM:PF03354.14	Large-Terminase	MARTKKKLGNQNPTQSVILPYTKKKSLYKEAIDIYERTGLSSYPWQQNLLKAIMAVDKTGVWVHQKFGYSIPRRNGKSEILYILELWGLEHGLNMLHTAHRISTSHSSFEKVKRYLEKMGYEDGEDFNSIRAKGQERIELYKSGGVVQFRTRTSNGGLGEGFDLLIIDEAQEYTTEQESALKYTVTDSDNPMTIMCGTPPTPVSSGTVFTKYREACLFGKGKYSGWAEWSVNEEKEIDDVEAWYNSNPSMGFHLNERKIEAELGEDKLDHNVQRLGFWPTYNQKSAISETEWNVLKVEGMPKLSGRLFVGIKYGQDGTNVSMSIAVRTADKRIFIETIDCQSVRNGNHWIVAFLKQADVSQIVVDGASGQKVLDDELKDYKIKNVILPTVKEIITANSLWEQGIYQHTICHNGQPSLAKVATNCDKRNIGSNGGFGYRSHFSDMDISLMDSALLAHWACVTTKPKKKQKISY*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0038	cloud	direct	high	1418	0.999	GCA_003944005.1_01084
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	85846	86310	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	20338	20802	GCA_003944005_1_4_105	GCA_003944005_1_4_105	+	252317	.	PDB:6B0X_d	Major-Capsid-protein	MRMSEFKAITTQEEFDAAIKSRLVREKEKYSDYDQLKSRVAELETENGGLKSSIEASNQSKAEADKQVADLQSQIAGFETEKLRTRVALEHGLPLDLAARLQGDDEEALKADAEKLAGFMKIKKPVPPLKGNEPNLGNDEDAALRGMLRNMRGE*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0039	cloud	direct	moderate	458	0.985	GCA_003944005.1_01085
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	86314	87204	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	20806	21696	GCA_003944005_1_4_106	GCA_003944005_1_4_106	+	252317	.	PDB:3JB5_B	Major-Capsid-protein	MATLQSGDLFPVETVQDIFSKVKGHSTLAKLTTQEPIPFTGTETFVFNLEGNAEIVGEGNPSSAGNATMKPKVIKPVLITYQARVSEEFVHCSEEKQLSYLKSFIDGLAKKVAQAIDIASFHGLEPKSMTDASFKATNSFDGLITGNVVTYEADKIDENIDAAVATITANDCEVNGIALSPAAGAALGKIKVNGVVQYPEYRFGQNPDSFYGMKSDVNKTLTTVASTAKKDHVIVGDFENAVKWGYAENIPLEIIEYGDPDGAGRDLKRYREVCLRTEVYAGWGILDEQAFARVEA*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0040	cloud	direct	high	890	0.999	GCA_003944005.1_01086
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	87206	87412	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	21698	21904	GCA_003944005_1_4_107	GCA_003944005_1_4_107	+	252317	.	cd12935	LEM-like domain of lamina-associated polypeptide 2 (LAP2) and similar proteins. LAP2, also termed thymopoietin (TP), or thymopoietin-related peptide (TPRP), is composed of isoform alpha and isoforms beta/gamma and may be involved in chromatin organization and postmitotic reassembly. Some of the LAP2 isoforms are inner nuclear membrane proteins that can bind to nuclear lamins and chromatin, while others are nonmembrane nuclear polypeptides. All LAP2 isoforms contain an N-terminal lamina-associated polypeptide-Emerin-MAN1 (LEM)-domain that is connected to a highly divergent LEM-like domain by an unstructured linker. Both LEM and LEM-like domains share the same structural fold, mainly composed of two large parallel alpha helices. However, their biochemical nature of the solvent-accessible residues is completely different, which indicates the two domains may target different protein surfaces. The LEM domain is responsible for the interaction with the nonspecific DNA binding protein barrier-to-autointegration factor (BAF), and the LEM-like domain is involved in chromosome binding. The family also includes the yeast helix-extension-helix domain-containing proteins, Heh1p (formerly called Src1p) and Heh2p, and their uncharacterized homologs found mainly in fungi and several in bacteria. Heh1p and Heh2p are inner nuclear membrane proteins that might interact with nuclear pore complexes (NPCs). Heh1p is involved in mitosis. It functions at the interface between subtelomeric gene expression and transcription export (TREX)-dependent messenger RNA export through NPCs. The function of Heh2p remains ill-defined. Both Heh1p and Heh2p contain a LEM-like domain (also termed HeH domain), but lack a LEM domain.	MEYINKETLASIETNCELGGDWVLASELKESYKLTVPEIKSKLDELGIEYDSKAVKADLIALLEQHEG*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0041	cloud	direct	high	206	0.995	GCA_003944005.1_01087
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	87418	87813	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	21910	22305	GCA_003944005_1_4_108	GCA_003944005_1_4_108	+	252317	.	PFAM:PF09355.9	head-to-tail-adaptor	MKNFATVDELQELWRPLKLDEQKRAEALLKVVSASLCVEAEKVGKDLDKLVVANESYACVVKSVVVDVVARTLMTSTDQEPMTQVSEGALGYTWSGSYLVPGGGLFIKDSELKRLGFKKQRYGVIDIYGTD*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0042	cloud	direct	high	395	0.997	GCA_003944005.1_01088
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	87800	88141	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	22292	22633	GCA_003944005_1_4_109	GCA_003944005_1_4_109	+	252317	.	PFAM:PF10665.8	Minor-capsid-protein	MARIKGITVTLIDKVKTGQDDFGHSIFEDKEIEVENVLVSPTTSDDITTQLNLTGRKAAYTLAIPKGDTHDWENKEVRFFGKRWQVFGLPLEGIEDLIPLDWNKKVTVERYEI*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0043	cloud	direct	high	341	0.997	GCA_003944005.1_01089
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	88131	88358	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	22623	22850	GCA_003944005_1_4_110	GCA_003944005_1_4_110	+	252317	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MKFKLNRAGVADLMKSGAMQTVLNKHASNIKNRCGDGYEQDVYVGRNRANAMVSAKTVKAKKDNLKNNTLLKAVR*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0044	cloud	direct	high	227	0.996	GCA_003944005.1_01090
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	88359	88694	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	22851	23186	GCA_003944005_1_4_111	GCA_003944005_1_4_111	+	252317	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGHLDVPSFFEHETKMPDSFILIEKTSGSERDHSKSATFAFQSYASSMQKAAKLNEKVKEVVKEMVELNSISGVHLNSDYNYTDTETKRYRYQAVFDINYF*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0045	cloud	direct	high	335	0.997	GCA_003944005.1_01091
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	88710	89261	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	23202	23753	GCA_003944005_1_4_112	GCA_003944005_1_4_112	+	252317	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MSKSSNVTTAKPKVGGAIYSAPLGTELPTDATTALNAAFKSLGYISEDGMTNTNSPESEDIKAWGGDVVNSSQTEKKDTFGFTLIEALNVEVLKEVYGSENVSGDLSTGIEVKANSKELKDHCLVAEIVMKNGVLKRIVVPQGKVTEIGEISYKDGETVGYQTTVTAFPDKDQNTHYEYIKGA*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0046	cloud	direct	high	551	0.998	GCA_003944005.1_01092
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	89264	89602	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	23756	24094	GCA_003944005_1_4_113	GCA_003944005_1_4_113	+	252317	.	.	hypothetical protein	MSKSKKNKVKTPSKQVTKMNLPELNSNVIKGTTSTGFKFEVSQERLANYELVEAIAEVDENPLVLPKLVKKLLGPQAEDLKEHVRDENGLVPLNRLMAEIEEIFNSKTSLKN*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0047	cloud	direct	high	338	0.997	GCA_003944005.1_01093
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	89617	89991	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	24109	24483	GCA_003944005_1_4_114	GCA_003944005_1_4_114	+	252317	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIKADEDALICDLAETYHIYDYRQLPALKVAVFSIGLRDDSRIKMKLSNQKVSTETLLLAGIFDRLSTLAWFKTADGQKGTNRPESIVEQLTAEPQERKEMVFTSGEEFEKARKEILEKIGGEH*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0048	cloud	direct	high	374	0.997	GCA_003944005.1_01094
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	89991	93071	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	24483	27563	GCA_003944005_1_4_115	GCA_003944005_1_4_115	+	252317	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATELGQAYVQIMPSAKGISGSIQSALAPEATAAGNSAGSSIGSSLVKAATGIIAAAGIGKAFSAAINEGAALQQSLGGIETLFKGSADKVKAYANEAYRTTGLSANTYMENVTGFSASLLQSLGGDTNKAAEIANMAMVDMSDNANKMGTSMDRIQDAYQGFAKQNYTMLDNLKLGYGGTRTEMERLLADATKLTGVKYDINNLSDVYQAIHAIQGKLDITGTTAKEAATTFSGSFASMKAAAQNVLGKLALGEDIMPSLKALAKTTSTFLFKNFIPMVGNILRGLPTVIGTVLKEGIAAIFGDGIAKSITDKIYNIYANVSGVLNALSDMIFGSGNKADNKDFLKSYLGLDEKLASRIVNIGENIRVTFVNIGSTIGNIAGIVSNFVSDLLGIAGSKQGVNAIGSAFESVTGFIKSASEKIKEFTGWLKNSPAALDSLKGAIVGITTALTTYKVVTGVTKGIEAARNGILAIQNAYTLAQFVRTGALTSAIAANAAATMGVSGAFKIFNAVLSLSGGWIGIAVTAIGALVAGLTWFFTKTKTGQKIWAAFVEWIKQAWQGIADFFVGLWSGITQGASNVWNGVTAIWNAAVETIKSTWNGIVEFFSNLWSGITSGVSAAWTAITQVIMTIVQPFIDGFINIWNGIKDGLSQMWEGVKMIFQGAWDFIKSIVLGAVLIVLDIITGNFGKLGEDLGLIWQGISDAVSTIWEGIKTYFMGVVSAIVGYGQSVFENFSNALAAIWDFIKNTASVAWEWIKTTISNLITGLVQGAQNILNGFMSFLSSLWNFITSVAVGAWNGLKSSVQAIINGIVQGAQNAWNSMKQGVSNLVSGIANIFNGLRNINLWSAGRAILDGFLGGLKSAWQGVTDFVSGIAGWIRDHKGPIEYDRKLLIPAGRAIMNGLDEGLRNQFKSVKSTVGNMAGEITDSLEDQPLSIGLSGFESVNPQMDVSNAILTTKMANVAQTQSREIELLSIIAKLANRPTIVSQELDKREISRIIAEPVAEEQARKQAILNAVDGLGWQMN*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0049	cloud	direct	high	3080	1.0	GCA_003944005.1_01095
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	93056	94579	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	27548	29071	GCA_003944005_1_4_116	GCA_003944005_1_4_116	+	252317	.	PDB:5LY8_A	Distal-Tail-protein	MANELIKVYFNDVELTKWITVLDGFTALGGADYDPTFHNYPILNGSEFIKTRKKLKKIPVPFYVKYEGVADYDALQTSLNVDEPKKLTFSHLPDRVFYAIPSGDLDFKEIKFSGKGTINFSIVDGLAHSKNPRYFEFKKNEQGILEAEIENNGSEEIPVNYRIKLKRESGFVGITSRYGAMQFGKIEETDSVEDKKNVLLSANGTGDFSNWTDGTIFYENQNKKVVTKMTADKNLGGRLGVLSADFTNTADGACFGAVKELNLPQQAKDWYIWARAWFETGYVSQTGAWCLSVVDSDNHFIAGMAIEKSERTRNKALVVFLMGDGAGGSRVVKSIEFSPTLWVKDNPYSLEGKDQNRNMFDLRKEGDKITYFWYGSYHSFFESKVKDKQAAKVQFFVGQYKGRNSTINELVTHHYLNDFAIYKLNVPYWRDVPNRYPTGAELFIDSTGEVNPEEKGRLYVNNLLAPDDEILGTDYFKVPPGKTKVQLLVSSFAEVESARAEIEEAWI*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0050	cloud	direct	high	1523	0.999	GCA_003944005.1_01096
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	94579	98685	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	29071	33177	GCA_003944005_1_4_117	GCA_003944005_1_4_117	+	252317	.	PDB:3GUD_A	Neck-appendage-protein	MKGNVRIAIRDTTDTHVVGFFDNKSGIKYNAANLTQFLKGSCSVLVLTYHSKKMVAQSGQKLAFRFKDKDFWLNINSVKKTGYNIELTAYSLSLEANKEKRGPHKPASVMTIKQYIDYYDPENSFVIGINEVADKSLKLEWSGTDTILARLYSVANGFGAELEFVTELNNDYSLKRHVINIYREGNLGKDKTGMPVRVGEKLKVINYSDNMDDFYTGIRRIGKDGLTIAGLNKKIYDDKGNLLFYSSGDTLYAPQARDKYPSIARKTNDGYIVNEDSGTEYANKEALFGYMLSELKKHCELKVDYEVEGAVDGNIGDKKTLIDAQHFDPPLYVQARISEQTESLLEASDVKTSLSNYVRKSSQIANELLQKVEQLALEATPYTIKLATNNGIIFKNNQGQSTVYPTLKKGNKTVECTWQWLVDNQSFGTSATFEVRAAGMSNKLVLTAIALIDGKEVAREQVTFSNVNDGAKGDPGKSITITKTERQADGVKVTFSDNKSIVVPKGDKGDPADPKELNQLKQEMNQARQGLDEVKADLLREKSESSAKIDQVKQDVGAIRNQQTAYEQSNTQNLARITGQLGDKASKSEVKQTADGIREEISHLNTASRNYILNSDMTTATDRTTGTGLPLSSDLIRTLNAERSFTLSVDVIAQNMVAKNDKKRFGISYELKFSDGSNLWTEVFQTSDTALARISKNFVLPVGKQIVSIAGGLYFQALGQIKLSRPKWGIGHNNKEWVKAIEDTDEQITAARTIFEKTAEGLKTDMASVKSYVADDGKRREQLEQYTRTETARSAEALRKQASESYVAKSQYSEDARGVARRFEELNLNGTNLLPNTDFKNLVDVGNQFTVGGKTYKVKTLDKWYSSYNDGIPNPKTNYHGFFNETKFSETVFEFNESNGVREWKGLPIFITNDSRYTVGKYIFSADVNATGLGTHLEVGFYYYNKSGMREFHAGRSRKNITSVNVWSRISLELKINDDVDFSKEMGFYIYGYGFTSNSVLYFKRPKLTNTNWTPSVEDNKKYTETKIAEYKQTVDGQLAAVKQDVNGKVSQTTFDQRANQITQTVQELNDNVVKKNQIRVNENGIVSTAEKVVNGQTLASMIAQHPEWVEIIAKLLKVKADMIVNGAITADKLNVKKLSALASSLGEISAGLIDLRKHWERTSSEDVWGINRDVTYDTGALLGDFGLLTNGAPTRLQRNDTKPTIMPLVWLNSGELYFANVDSRYDLKQIIVNAVYPFVRTGDAKIRFGKMEDGRDALYIECLLSELYLKANNYTDWKQSEINSKVRWKVQGSLVLVDFNLQFDRDGDYHLVDIPKQYVPSNKMFPVQAWSLDRNKDRTAQLNVGGDLHIIGAERGVPYLGQIIWTY*	hallmark_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0051	cloud	direct	high	4106	1.0	GCA_003944005.1_01097
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	98713	99261	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	33205	33753	GCA_003944005_1_4_118	GCA_003944005_1_4_118	+	252317	.	PF07104.11	Protein of unknown function (DUF1366)	MKFRVANKYLREANKTFVAIRCDEPYTAYDRVLEGDRMNDSDEILTDAVLKIVATELDPTGAIAEMQQKLDKTSDATNKNKDSVERTSKLTDVLILLAISIEGGMQQDLYKKVASLLPTLTDGVRYSFGDIVSAPYPYDTNPKYPQGTPVILKFLDNWTHKGQPLQELLQKGACTTIMPKLG*	hhsuite_tools	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0052	shell	direct	high	548	0.998	GCA_003944005.1_01098
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	99273	99503	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	33765	33995	GCA_003944005_1_4_119	GCA_003944005_1_4_119	+	252317	.	.	hypothetical protein	MTPDVVNAVVTISASLIGTFGGIVTSAKLTTFRIQELEKKVEKHNSVVERTYRLEERTNYFDERIDKLESKIEKEK*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0053	cloud	direct	high	230	0.996	GCA_003944005.1_01099
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	99505	99789	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	33997	34281	GCA_003944005_1_4_120	GCA_003944005_1_4_120	+	252317	.	PFAM:PF06946.10	holin	MQQILITAGVVAPIISAIVNVAKAQFKLDGKQVSTLALVLGVVVGLTYAATIVRGDYAVYGWGGLIAGLSAIGYYELAFKNKKGDTTDDTKKEN*	phrogs_hmm	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0054	cloud	direct	high	284	0.996	GCA_003944005.1_01100
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	99767	101068	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	34259	35560	GCA_003944005_1_4_121	GCA_003944005_1_4_121	+	252317	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MTQKKKIKQFLAISAIFIGFIAPTVAQAAVGDQGVDWSVYQGTNGIFGYGHDKFAIIQIGGINAYGMYGQSTYETQVASAIAQGKRAHTYIWYEVGGNAALGEQVLKNFLPQVQTPKGSIVALDYESGASASKEANTNAILHGMRMIKAAGYTPMYYSYKPYTVAHVDYNRILAEFPNSLWIAAYPDYNVTPSPNYNFFPSLPGIAIFQFTSTYIAGGLDGNVDLTGITDNGYGRKNTPKTQTPAIKEGEKADNTPKSDIKAGDTVKVNFSATNWATGEEIPEWVKGRSYQVAEVSGDKVLLAGINSWIYKRNVEIISTTNSQPQAPAVPSAASYTVQPGDTLSGIAAKYGTTYQQLAALNGISNPNYIYVGQVLKVSGQGQSSPQNVVYHTAQWGDTLSGMASKYGTTVENIQALNGLSGDLIYAGVTYRIK*	common_virus_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0055	cloud	direct	high	1301	0.999	GCA_003944005.1_01101
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	101219	101680	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	35711	36172	GCA_003944005_1_4_122	GCA_003944005_1_4_122	+	252317	.	COG3600	Uncharacterized phage-associated protein  [Mobilome: prophages, transposons]. 	MITALDVANTFLARAKKEKIDISPMKLQKLIYILYKNYLKETKKKLFSDKFEVWKYGPVISEVYQAFKEYRSNRITEFYLNRDGSYNTVKLGNNSHFDKIFEKVWNEYRLIDGIYLSQLTHQRNTAWSKADDRGDIFLNDHDIFEEEEYEIVI*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0056	cloud	direct	high	461	0.998	GCA_003944005.1_01102
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	101664	101981	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	36156	36473	GCA_003944005_1_4_123	GCA_003944005_1_4_123	+	252317	.	.	hypothetical protein	MKLSSKKENMEDIPVEEDVPKDNHFPIDNSNSIKPNEVTKDVFNTIKGHNLLGWCVAILVVIYLFEFFRNQGKISEAGGKILEIFKLLIFSLTGYLFGTNANKDD*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0057	cloud	direct	high	317	0.997	GCA_003944005.1_01103
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	102674	103456	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	37166	37948	GCA_003944005_1_4_124	GCA_003944005_1_4_124	+	252317	.	PRK05299	30S ribosomal protein S2; Provisional	MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKFADQAYDFMRDAAANDAVILFVGTKKQAADAVKDEAERAGQYYINHRWLGGTLTNWETIQKRVARLKEIKRMEEDGIFDVLPKKEVALLNKQRARLEKFLGGIEEMPRIPDVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNTDPDDIDVIIPANDDAIRAVKLITAKMADAIIEGRQGEDNVESVEAELAATDTQADSIEEIVEVVEGTNE*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0058	persistent	direct	high	782	0.999	GCA_003944005.1_01105
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	103539	104582	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	38031	39074	GCA_003944005_1_4_125	GCA_003944005_1_4_125	+	252317	.	COG0264	Translation elongation factor EF-Ts [Translation, ribosomal structure and biogenesis]. 	MAEITAKLVKELREKSGAGVMDAKKALVEVDGDIEKAIELLREKGMAKAAKKADRVAAEGLTGVYVSGNIAAIVEVNSETDFVAKNAQFVELVNETAKVIAEGKPANNEEALALIMPSGETLEAAYVSATATIGEKISFRRFAVVEKADDQVFGAYQHNGGRIGVITVLSGSDEDLAKHVAMHVAAMKPSVLSYKELSEEFIHDELAQMNHKIDQDNESRAMVGKPALPHYKFGSKLQLTDEVIAQAEEDIKAGLAAEGKPEKIWDKIIPGKMDRFMLDNTKVDQQYTLLAQVYIMDDSKTVEAFLESQGVTIAGFTRFEVGDGIEKAANDFESEVAATMAAALGQN*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0059	persistent	direct	high	1043	0.999	GCA_003944005.1_01106
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	104658	105008	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	39150	39500	GCA_003944005_1_4_126	GCA_003944005_1_4_126	-	252317	.	.	hypothetical protein	MKMDWFKYTRHVLVWWFSTLFFFTIISANYVDVQVATLVACLFAPFLFEPSSIKPKTKWIIDLAIIVISVFAVLFTQTYRIAFTYSEITYLLISLIILILIDLVISHKGFTKRIVK*	.	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0060	persistent	direct	high	350	0.997	GCA_003944005.1_01107
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	105267	105728	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	39759	40220	GCA_003944005_1_4_127	GCA_003944005_1_4_127	+	252317	.	COG4463	Transcriptional regulator CtsR [Transcription]. 	MSSKNTSDSIEEYIKTLLAQAGIAELKRSEIADVFQVVPSQINYVIKTRFTESRGYIVESKRGGGGYIRIGRIEFSNHHELLCDLLHSVGEQISHQVFTDIIQLLFDEQIMIEREGNLLLATTTDRVLGTNAAQIRARMLKKILQQVDRKGKN*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0061	persistent	direct	high	461	0.998	GCA_003944005.1_01108
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	105732	108161	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	40224	42653	GCA_003944005_1_4_128	GCA_003944005_1_4_128	+	252317	.	PDB:4M4W_K	Replicative-helicase	MKYSKALTESIESAQLLASHFETDYLESWQLLIAMANNPYSVAGSVLNDYPLEIDDFEKAAFHITGKVYQQEGDFTIWPFSYRMKVLFLTAEQIAGAVHANNLGTEHILLAMLFDRGSLAARILEFIGFSYEDKEGVLRMTDLRKNLEHKASWNKEDLKAIRHLNKSAAATRQTMANMMGMPPATSGGLEDYTRDLTEMAHMGLLEPVIGRDKEISRILQILSRKTKNNPVLVGDAGVGKTALALGLAQRVADGQVPNELAKMRVLELDLMNVVAGTRFRGDFEERMNNIINDIEADGHVILFIDELHTIMGSGSGIDSTLDAANILKPALAKGTLRTIGATTQEEYQKYIEKDAALSRRFAKVTIEEPTVADSIAILQGLKKSYEDHHKVVITDSAIETAVKYAHRYLTSKHLPDSAIDLLDEAAARVQNKSPQNHVKAELSAADKALMAGDWNKVDTLLEKESQPIVYKLRVKDEDVLATLSSLSGIPVQKLTQTDAKKYLNLEKELHKRVIGQNEAISAISRAIRRNQSGIRTSKRPIGSFLFLGPTGVGKTELAKALAEVLFDDETALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNRPYSVLLFDEVEKAHPDIFNVLLQVLDDGVLTDSKGRKVDFSNTIIIMTSNLGATSLRDDKTVGFGARDVRFDHENMEKRMMEELKKAYRPEFINRIDEKVVFHSLTSEDMQEVVKIMVQPLISSLAEKGIKLKFQPSALKLLAQEGYDPEMGARPLRRILQTRVEDHLSELLLAGELKTGQSLKVGVKAGKLKFEVL*	rep_hall_hmm	common_virus	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0062	persistent	direct	high	2429	1.0	GCA_003944005.1_01109
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	108208	108648	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	42700	43140	GCA_003944005_1_4_129	GCA_003944005_1_4_129	+	252317	.	PRK03624	putative acetyltransferase; Provisional	MNIREMVEADYDQVYQLWLSCAGMGLNHLDDSKEGIAQFLKRNPQTCLVAVENQIIIGAILVGFDGRRAYIYHTAVHPSYRRRGIARQLVETVLTVLDDLKIHKVALVVFKRNKEGNQFWEKLGFSVREDLIYRNQARTEMTRIDT*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0063	persistent	direct	high	440	0.998	GCA_003944005.1_01110
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	108727	109698	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	43219	44190	GCA_003944005_1_4_130	GCA_003944005_1_4_130	-	252317	.	COG0042	tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]. 	MTNLNTPFLIGDVKIPNRTVLAPMAGVTNSAFRTIAKELGAGLVVMEMVSDKGIQYNNKKTLHMLHIDEEEHPVSIQLFGSDEDSLARAAEFIQENTQTDIVDINMGCPVNKIVKNEAGAKWLKDPEKIYSIINKVRSVLDIPLTVKMRTGWADASLAVENALAAESAGAAALAMHGRTREQMYTGHVDLETLHSVAQALTKIPFIANGDIRTVQDAKQRIEEVGADAVMIGRAAMGNPYLFHQINHYFETGEILPDLSFEDKMHIAYDHLKRLIDLKGEHIAIREFRGLAPHYLRGTAGAAKLRGAIAQANSLAEIEALLQV*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0064	persistent	direct	high	971	0.999	GCA_003944005.1_01111
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	109685	110647	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	44177	45139	GCA_003944005_1_4_131	GCA_003944005_1_4_131	-	252317	.	PRK00114	Hsp33 family molecular chaperone HslO. 	MVRGRTTKSLSYEILIFVPLPFLFYVTIKGMDKIIKTISENGAFRAYVLDSTETVRTAQEKHQTLASSTVALGRTLIASQILAANEKGDTKITVKVLGTSSLGAIITVADTKGTVKGYVQNSGVDIKKTATGEVLVGPFVGNGEFLVITDYGTGNPYHSMTPLVSGEIGEDLAFYLTESQQTPSAIGLNVLLDTNDKVKVAGGFLLQVLPGAKEEEITRFEKRIQEMPAISTLLESENHIEALLSAIYGNEPYKRLSEEELRFQCDCSKERFLNALSSLPKSDLEEMRDEDHGAEITCQFCQSTYHFDEKDLEELIRDKS*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0065	persistent	direct	high	962	0.999	GCA_003944005.1_01112
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	110766	112037	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	45258	46529	GCA_003944005_1_4_132	GCA_003944005_1_4_132	-	252317	.	PFAM:PF05816.10	tellurite-resistance	MSQEFNFDIDKIANNAISKTDRTTEIIESTETQANGQMNFLEKLTPEQQDAIIAKAPQLVDNFISDQNTLLDFGQAAVEEVNNTVNRILAEQKKLQIPQVDELLKNTNKELNGFVAKYKDTQIAELDKKPNFLEKLFKQSKNTLQEFYFDSQNIEQKMDSMAATVVKQEDLLARNIVSAEMLIEDNTKSIENLVGVISFIEATQKEAGARASTLQNEVAQLDTATLDYQTKSQELARLTEVVNTLEQQHTEYISRLYVAWATTPQMRNLVKVSSDMRQKLGMLRRNTIPTMKLSIAQLGILQQSMKSGQVADAISNANNAALQMLAETSKEVIPQMERISQNPTIAVESVTKLAESLVAQNQGIISAIDKGREKRALLEATVIKSAETINDSVKLRDQKIIQALLDQGKEIQKEVDKPTTSET*	phrogs_hmm	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0066	persistent	direct	high	1271	0.999	GCA_003944005.1_01113
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	112056	112874	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	46548	47366	GCA_003944005_1_4_133	GCA_003944005_1_4_133	-	252317	.	PF10112.9	5-bromo-4-chloroindolyl phosphate hydrolysis protein	MPRRNYNNVRSRRWIGILLILIAVGIIIQYLIPILLSIGIGYGIYYYATHKPKKITEPSASQQIEDLKKEIRAADSRIKQLDNYLKEKSYANYQQLADQLLPQLSYIQGRADTLKKYISPEIYQRIQRKVQNVTTDIHEQLHNLRAQTSESLKPNLEELAPELLETIHNIQIDHEAILKKISQSESNNKEELTAIHQSQMEHYEDILEGYLKIKTSPKDFYNAEERLSSAKAAIEQFDLDLDETLRQLNEADLRDFDISLRILSKKEPNTEL*	hhsuite_tools	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0067	persistent	direct	high	818	0.999	GCA_003944005.1_01114
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	113239	113433	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	47731	47925	GCA_003944005_1_4_134	GCA_003944005_1_4_134	+	252317	.	cd08287	formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family.  The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones.  FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	MVNLAMAGGPASCTTYDKEVLLKAVLDGQINPGKVFTQSYKLENIDQAYKDMADRKTIKAMIVM*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0068	shell	direct	high	194	0.995	GCA_003944005.1_01115
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	113594	114151	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	48086	48643	GCA_003944005_1_4_135	GCA_003944005_1_4_135	+	252317	.	PFAM:PF06852.11	acetyltransferase	MSLTSQIITAEFPDLEKVEQLNTEAFPEEERAPLSELLRYGDGEYSHFFAFYDGDEFVGFAFSVYNERAFYISFFAIMPHLRSHGYGGKIIDKLVDFYQRTMILEVERLDEPCDNLEQRKARMDFYKRNGFRSSHAYLEYDGLSFEILYKGPFFDEEAYRDIFKKIQEDGYFEFEIKHGHGRDWE*	phrogs_hmm	hypothetical_protein	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0069	persistent	direct	high	557	0.998	GCA_003944005.1_01116
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	CDS	114238	114594	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	48730	49086	GCA_003944005_1_4_136	GCA_003944005_1_4_136	-	252317	.	PRK02471	bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB. 	MLEQQGYKADDILPKGVQVFLRRNSNISTGGDSVDVTEIMHASYKELATETATAMGAWVCGVDLIISDSTLPASKKESNCTCIELNFKPYIYMHTYCAEGPGQSITPNILAKLFPEIY*	mmseqs_cdd	nonviral_gene	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_CDS_0070	cloud	direct	high	356	0.997	GCA_003944005.1_01117
GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote	cenote	tRNA	102305	102376	GCA_003944005.1	RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005.1_RJOK01000004.1	GCA_003944005.1|RJOK01000004.1	GCA_003944005_1_4	GCA_003944005_1_4@C8	36797	36868	tRNA-Cys	tRNA-Cys	-	252317	.	tRNAscan-SE score: 55.6	Cys	NA	tRNAscan-SE	.	C8	49086	65509	114595	GCA_003944005.1|RJOK01000004.1@region_65510_114595@tool_cenote_tRNA_0001	.	.	.	.	.	.