core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	98513	98812	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	1	300	GCA_003944315_1_2_95	GCA_003944315_1_2_95	-	199528	.	pfam19385	Family of unknown function (DUF5960). This entry represents a member of a biosynthetic gene cluster (BGC). This BGC (BGC0000561) is described by MIBiG as an example of the following biosynthetic class, RiPP (ribosomally synthesized and post-translationally modified peptide).	MNQLEFQRNHLQMDYYSESYQDFERDFYRYSNMNIPLTFLTDDILKTMATSRKNYFVLNKEKSRDNRDHFFIFEVRTLEENPLIYHYTYKKTTTYLAEK*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0001	cloud	direct	high	299	0.997	GCA_003944315.1_00580
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	98799	99167	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	287	655	GCA_003944315_1_2_96	GCA_003944315_1_2_96	-	199528	.	PF08863.10	YolD-like protein	MIDRSYLPFQSAREYQDTKMQKWMGFFLSEHTSALTDDANKVTYMSDLSLEKKLLLLSQVYAGQLNTRIHVVKKNNQVSYTGTIPSLTKDFILIKTTTGHINLKLKDIVSIELVEEVLYESA*	hhsuite_tools	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0002	cloud	direct	high	368	0.997	GCA_003944315.1_00581
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	99164	100579	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	652	2067	GCA_003944315_1_2_97	GCA_003944315_1_2_97	-	199528	.	cd01700	umuC subunit of DNA Polymerase V. umuC subunit of Pol V.   Pol V is a bacterial translesion synthesis (TLS) polymerase that consists of the heterotrimer of one umuC and two umuD subunits.  Translesion synthesis is a process that allows the bypass of a variety of DNA lesions.  TLS polymerases lack proofreading activity and have low fidelity and low processivity.  They use damaged DNA as templates and insert nucleotides opposite the lesions.  Pol V, RecA, single stranded DNA-binding protein, beta sliding clamp, and gamma clamp loading complex are responsible for inducing the SOS response in bacteria to repair UV-induced DNA damage.	MGYIDYSIEPQSDIAFLDMKSFYASVECVDRGLHPLYTSLCVMSRADNSAGLILASSPMFKKVFGKANVGRSYDLPFDINTRKFSYQNAWKQGLEVTPKYKSFIEHWAKRTLIVPPRMDRYIEKNLEIQHIFQDYAAPDDILPYSIDEGFIDLTSSLSYFISDKSMSRKDKLDNVSAMIQRDIYSKTGIISTVGMSNSNPLLAKLALDNEAKKTATMRANWSYEDVETKVWAIPKLTDFWGIGSKTEIHLQKLGIHSIKELANFNPDILKKEFGKVGVQLWFHANGVDESNVHEPYKPKSRGLGNSQVLPRDYRTQREIEIVLAEMADQVANRLRSAHKKATVVSIHIGYSRTEMKKSINAQKKIDPANLPKTMVGHVLELFRKKYTSGAVRQIGVSYGGFVDENFTLLSLFDDVEQIEKENRLQTAIDVVREQFGFLAIQKGTVLTEGSRNIERSKLIGGHSAGGLEGLK*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0003	cloud	direct	high	1415	0.999	GCA_003944315.1_00582
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	100584	100712	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	2072	2200	GCA_003944315_1_2_98	GCA_003944315_1_2_98	-	199528	.	.	hypothetical protein	MNVKEMIYIKDERIIFTPDKFEYDITDYIGELIEELEKLKRR*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0004	cloud	direct	high	128	0.992	GCA_003944315.1_00583
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	100702	100929	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	2190	2417	GCA_003944315_1_2_99	GCA_003944315_1_2_99	-	199528	.	.	hypothetical protein	MKLKDILELGTYGFNPNCKVEIFCMDNFEERLENEGFDEILIPQNDDAKIYPYAFLIEDSILIAMTEVDDDINEC*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0005	cloud	direct	high	227	0.996	GCA_003944315.1_00584
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	100932	101621	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	2420	3109	GCA_003944315_1_2_100	GCA_003944315_1_2_100	-	199528	.	PDB:2FJR_A	Repressor-protein-CI	MFSHGRLKQRRLEIKLSQTAIANQLNVHRSAYHNWENGRNTPNQKNLTALAAILDVPVTYFESEYNIVNNYLQLSPDNQLKAEEYVEELLLSQQTSNVIPLFSVQVLSDIQLSAGLGEGFFDEFETETIYSDEEQYGYDIAAWIEGDSMEPVYKSGEVALIRSNGFDYDGAVYALSWNDSVYIKKLYRDEDGFRMVSLNKDYPEKFIPYEDEPRIVGLVVGHFMPVEGV*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0006	cloud	direct	high	689	0.999	GCA_003944315.1_00585
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	101735	102961	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	3223	4449	GCA_003944315_1_2_101	GCA_003944315_1_2_101	-	199528	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MTFDRHILESNRKLTTTNILSKKTTIAENLSGNDIKYLRKKYNLTQKELADALGLQKFGDRTIRRWEAEETHPSKLEQSSIQSFFNSLKNPPFIISENLPFKMIDLFAGIGGTRLGFQLTNEVETVFTSEWDKFAQKTYITNFGDTPEGDITQIDENTIPDHDILVAGFPCQAFSQAGKRLGFEDTRGTLFFDVARIIKAKRPKAFLLENVKNLKTHDKGKTYKIIISTLENLGYSTSTVLFKARDFGVPQNRERIYIVGFDKTCVNNFSEFRFPEPFHLETKLGNILQTDVDEKYTISDKLWEGHQRRKAEHKTKGNGFGYSLFNADSPYTNTLSARYYKDGSEILIEQKGKNPRKITPREAARLQGFPEEFIIPVSDTQAYKQFGNSVCVPTIHEIAKQILAVLKK*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0007	cloud	direct	high	1226	0.999	GCA_003944315.1_00586
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	103024	104661	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	4512	6149	GCA_003944315_1_2_102	GCA_003944315_1_2_102	+	199528	.	COG1401	5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms]. 	MLKDLGVIFDEQSRIASEFLSKNDTEVILSTEFKENYKKHIDMLGDEIYFEQYNSKYHTNSKFIIIPNQWFYLAFIAAPYYKEFLKYKSILLDTLSGDDFKEFCQTARNGELDENLFDTISVDLTETDTLFLKKFVTDYHWWHGGKEIHRGDSFISPILALLKLINASSEHVAIIVKYLVDADFDLSDVNKYFELVEMDSRSVVTTNYDNTNLVGDNILLYGVPGSGKSFKIATEYCNDENRMERLVFHPDYMNTDFVGQIMPTVKENGDITYLFSPGPFTRIVKKAIDNPSEHYYLVIEELNRGNAPGIFGEIFQLLDRSASGESVYGINNSILATEIYGDKSHQIKIPSNLSLLATMNTADQNVFTLDTAFQRRWTMEMIENDVDLSEYGNYFIADTQYSWKVFNKVINKKILETSSQTLTSEDKRMGAYFISGNVLNIERIHQVPAGDSGNEFNKKNKRFAEKVLKYLWDDAFKFNREDIFDVALYPSLEAIIKRFTDNDNPENGRFDVFAKDIKEELENLKEATLIDNNNDTGEEDVDSTE*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0008	cloud	direct	high	1637	0.999	GCA_003944315.1_00587
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	104642	105922	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	6130	7410	GCA_003944315_1_2_103	GCA_003944315_1_2_103	+	199528	.	PFAM:PF10117.8	restriction-endonuclease	MLTVPNKSLLDMCRVATNMEGDTFVGIKAEIIEGVQEVTVNFPLGFEIAKDVETARRDIIALVSVLQAHNDEESRLRTVNVNQALKTLNFPMEAYTFVIHDFINRGTYYKETEEYYIQTLGGRINWARTIKRVQPVVQGNGFKFLKMESKKQSDTDITLLTEINKFCVYEAFLNMGWLYQLPQPEKARINYNRSQFESIIKKKMATTFNDMERRLFQSMIDILNYKDRQEEPDKFYFGTNNFQYIWENLIDYTYGIANKTSYFPRTKWDLVFETKTSKGYALEPDTIMVHNDNVFVLDAKYYKFGQTNLMKDLPPSTSINKQITYGEYVANQDLLKKLHGQNSKVYNAFLMPFSKSHEIFQTDGMYQYIGEALGEWKGQDKTYERVQGILVDVKTLVHNSARNRTQYIQELSDLISEKVDEKLANM*	phrogs_hmm	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0009	cloud	direct	high	1280	0.999	GCA_003944315.1_00588
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	105944	107098	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	7432	8586	GCA_003944315_1_2_104	GCA_003944315_1_2_104	-	199528	.	.	hypothetical protein	MESKFTFKNKIEKYSLTDTFDPNSGQEILTLYCSHMPKPDYAKYNFDSLTGLVTSNVDSKKNNPFGEXLSINKSTFIDYLNKYGFLFDWESSENYDSIEFNYILEFQSRLKLLLSIFNNIAKSIEYKELLLSTFLLIGKPQLELNLGKSKFIFPSLFPFHVLRNSIPEKNLSDMTTRHTSSTGKITTYIKVENKFSENGYTCDLDFLYYQDIIENLQYDDFIKDIFYLYVNKPANLEPITAHIIDFIYLFFSKVGICDISNTNLKFEDEDLSNFMKSSELKNALLILSKEILALEINRGLAKVQPKINLDTLLPDWNLPDLISAFYFTLFYSNPKIAMYKICENIGCNTPFYVQRSNTIKKYCSESCKNASSQRRYRNKQKDFQ*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0010	cloud	direct	high	1154	0.999	GCA_003944315.1_00589
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	107555	108013	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	9043	9501	GCA_003944315_1_2_105	GCA_003944315_1_2_105	+	199528	.	.	hypothetical protein	MDSRHSGLLRGTFRQCRIMGIPILTAFVPVAEEDYEQMVWWYNNSVNDYLKDYRKPSKNAPKISSWEAFTEKQDLPMIDDDIELYLFMDQFEFLKAKLAESNFQAPDILEMLFDGYENKEIFEKLGVQKSAGYKKVKNTQKEGLELYNKFNK*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0011	cloud	direct	high	458	0.998	GCA_003944315.1_00590
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	108052	110007	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	9540	11495	GCA_003944315_1_2_106	GCA_003944315_1_2_106	-	199528	.	CDD:cd08642	DNA-Polymerase-I	MPIKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDFNKEKLPQDILEALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSLEGVGTVLKLKDQKMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRRDVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAELKTLTGLEKPNSVLQMISWLREHGVATDSLDKKAVKELLKTVDETTAQVLKLRQQAAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARELFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMGALDMGLSEEELQPLVNSWRQANPNIVLYWWDVDNAVKTAVKELLPTSTQNIQFEVKSGILFITLPSGRKLAYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQLNDFKIVGHVHDEVIIECPIEQKLDEVASLMGIAPDWLSDINLRADGYECFFYQKD*	rep_hall_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0012	cloud	direct	high	1955	0.999	GCA_003944315.1_00591
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	110056	110223	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	11544	11711	GCA_003944315_1_2_107	GCA_003944315_1_2_107	-	199528	.	.	hypothetical protein	MMYTILTCTIMGLWVLIGLYFGYMTIRDDIRNEVERKAKQNKEKLSQTPLSRKNK*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0013	cloud	direct	high	167	0.994	GCA_003944315.1_00592
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	110242	110790	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	11730	12278	GCA_003944315_1_2_108	GCA_003944315_1_2_108	-	199528	.	PDB:1JE5_B	DNA-Helix-Destabilizing-Protein	MTTKVITGPNTRFSYLNANEPKSINGSTPKYSASLIIPKEDTATINKIKAAIEQAYKEGESKLKGNGKSVPALSTLKTPLRDGDLERPDDEAYKNAYFVNANSPHKPGVVDGNRQEIIDTSELYSGIYGRASITFYAFNSNGNKGIACGLNNLQKLRDGEPLGGRTRAEDDFATEDDDDFLN*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0014	cloud	direct	high	548	0.998	GCA_003944315.1_00593
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	110795	111916	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	12283	13404	GCA_003944315_1_2_109	GCA_003944315_1_2_109	-	199528	.	pfam10926	Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	MTNHAILSASASHRWLNCPPSARLTEDLPDTTSDFAIEGSDAHELCAYLVEKALGRNARDPTEDLTFYNDEMQECAEEYRNYVMEQVEKARGYSRDPTVLIEQRLDFSKWVPEGFGTGDCIIVADGRLQVIDYKHGLGVQVDADHNPQMMCYALGALEMFDGLYNFDNVTMTIFQPRKHNISTFKIEKTELLEWAENVLTPKAELAFKGEGEMQSGKHCQFCKLKNVCRKRAEDNLALAKMEFADPASLDNEXIAEILPKLDLLISWANDIKAYALNQATDGHPIPGYKLVEGRSVRKFSDESAVSQAVIEAGYDPYEKKLLTITAMTKLLGKKTFNDLLGGLIIKPSGKPTLVPIDDSRQEMNLAKNEFKEE*	mmseqs_cdd	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0015	cloud	direct	high	1121	0.999	GCA_003944315.1_00594
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	111909	112232	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	13397	13720	GCA_003944315_1_2_110	GCA_003944315_1_2_110	-	199528	.	.	hypothetical protein	MSKMKELNRLIHDMEETAKYYLRLVDEFKKLLTTEDETAPKSNPPKNEPQKEIQLEDVRAVLATKAKDGYKEDVRALLNAYGASSLSVLDPKHFAAVLEEAGGIGND*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0016	cloud	direct	high	323	0.997	GCA_003944315.1_00595
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	112207	112341	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	13695	13829	GCA_003944315_1_2_111	GCA_003944315_1_2_111	-	199528	.	.	hypothetical protein	MVNEPYIEPDDDVADTLIAISVISKLLARKIMEEENNEQNERTE*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0017	cloud	direct	high	134	0.993	GCA_003944315.1_00596
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	112618	114903	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	14106	16391	GCA_003944315_1_2_112	GCA_003944315_1_2_112	+	199528	.	PFAM:PF04735.11	dsDNA-helicase	MKFTLSHSGQTGIQTTTVYPNMVTITDKAILQNVAQFDHVAGLFVQNTRSNANFIKSDVLVMDIDNDHTENPDEWLTEEFLKDVFADYNFALVTSRSHMQTKAGKAPRPKFHIYFQINEVTDKDIYVAMKEELCNQYKFFDDHAKDAARFFFGNPNAQVIWHDSWLTIDEDLFQVVSIEDEEDFDADFYTPPSGPIQQGSRNSTMSVFAAKILKRLGVTQEARDGFDEQAQKCVPPLDKAELDTIWGSAVRFYNRTIKTSKSYVAPDAFNRETLKPDDYSDVGEAGVLAREYANKLAYTNATDYLYYDGTHWRENKQLALGAVVHFTDEQLAEAIALLESADKQLQSSGIDELTIKAGGKRLENAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPILSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAVSPSDQGMGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGSYSGKLSADALTMSNKRNVSPELAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPFHFVPSHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGRSDIKNFADHLYDNAAPAIMSWIIEGAEKAIKANFKTNVPTAVSSSVKAYREANDWLGHFLGDCCQVGDQLSEKSGELYSQYRAYCAKNMEYTRSTTDFYSALEQAGFKRKRTSKGNHILGLKLVEDGYDFLD*	rep_hall_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0018	cloud	direct	high	2285	1.0	GCA_003944315.1_00597
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	115188	115469	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	16676	16957	GCA_003944315_1_2_113	GCA_003944315_1_2_113	+	199528	.	PDB:4QBL_E	Nuclease	MREKYVEQALVKSVKARGGICPKWVSPSFSGVPDRLVFLPKGKFGLVEVKAPDQKPRKLQVSRHKLFERLGFKVYVIDRIEMIGEVLDEIDIT*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0019	cloud	direct	high	281	0.996	GCA_003944315.1_00598
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	115450	116826	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	16938	18314	GCA_003944315_1_2_114	GCA_003944315_1_2_114	+	199528	.	PDB:1Z6A_A	Helicase-of-the-snf2-family	MKLTLHNYQVVAKDFIIGHPYAAVILDMGMGKTATTLSAVNELMFDRFEVTKVLVIAPLRVANTVWSDEIEQWSELRNLRYSKIVGTPKQRKVALQKDADIYIVNRENLPWLVEQCSPYFKWDMVVIDELSSFKSWQSKRFKAFMTMRPYMKRVVGLTGTPSSNGLMDLFAEFKVIDGGERLGRFIGEFRSRYFEEGRRNGNIVYEYIPMDYAECQIQDKISDITISMKALDYLDMPELISTKKLVRMSEKEKEKYIQFKKEYVLSELDGLEVTAANAASLMNKLVQLSNGAVYSDDHTVVPLHEQKLDALEDILESANGEPVLVAYWFKHDLARITGRLEKLKVTSRVLKTEEDIREWNKGNVPVGLIHPAGAGHGLNLQKGGHHLVWFGLTWSLELYQQTNARLWRQGQEAETVVIQHIVTEGTIDEEILKALGNKDAQQERLIEAVKAQVGGTDG*	rep_hall_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0020	cloud	direct	high	1376	0.999	GCA_003944315.1_00599
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	116819	117322	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	18307	18810	GCA_003944315_1_2_115	GCA_003944315_1_2_115	+	199528	.	PFAM:PF05263.10	transcriptional-regulator	MDKVEYIAKNYRDMKMKLHLVQEKLLNYRPISENSVIQSLVFEKSEHEKVKKSKNHGRSELISLSFREKQEQENQEYLSSLLNTYYCLKMDLYYFEFVMELIPEDLKPLSKDLIYLGKSWTELEEIYEISHSTLAYRRRKILKQLRKCYRWTSKSLELKVEDYHIPI*	phrogs_hmm	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0021	cloud	direct	high	503	0.998	GCA_003944315.1_00600
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	117508	117735	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	18996	19223	GCA_003944315_1_2_116	GCA_003944315_1_2_116	+	199528	.	.	hypothetical protein	MWTDGRIDYQGQKVDYIAKVSPQPSEVGIDLGCIFKLDIEVAEETIVSYDRGWELYPETEEREAILEAVLMVLTV*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0022	cloud	direct	high	227	0.996	GCA_003944315.1_00601
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	117824	118006	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	19312	19494	GCA_003944315_1_2_117	GCA_003944315_1_2_117	+	199528	.	.	hypothetical protein	MTKRQQEKLNALLTEIAKEELFVETLEKRWSDNLDFYDVSVWGIKRALERAYEAGQKSVK*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0023	cloud	direct	high	182	0.995	GCA_003944315.1_00602
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	118054	119091	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	19542	20579	GCA_003944315_1_2_118	GCA_003944315_1_2_118	+	199528	.	PDB:5H9U_C	S-adenosylmethionine-synthase	MIISSEQVSVGHPDKICDQISDAILTECLKYDKSSRVAVETLIKDNQVVVAGEISTRHYFNLENIVRQVVEPLGMKNVRVTNLLGLQSSDIAQGVDNGGAGDQGMMFGYATDETPEYLPLPYVLATRVLEKLMSLGHPLLGKDAKAQVSYDYEKKRIDTFLVSIQHTEIANLAKVKRIVTEAMMSVALRYRQNLDFKVLVNPTGRFVLGGSFADAGVTGRKIVADTYGGFAHHGGGAFSGKDPSKVDRSAAYMARKIAKDIVREGYAKRCEVQLAYAIGVAEPVSVYVETFGTSRYTSTQLEGMIRERYDLTPQGIIKELHLLNVDYTKTSCFGHFTKAYLPWEK*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0024	cloud	direct	high	1037	0.999	GCA_003944315.1_00603
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	119093	119458	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	20581	20946	GCA_003944315_1_2_119	GCA_003944315_1_2_119	+	199528	.	PDB:5H0M_A	HNH-endonuclease	MPRRPSTPCKQNGCPNLVPYGHKYCDNYKANYQLDTKSTKAKGYNAQWNKARLRYLKVQPLCVQCKVKGRLTKATVVDHITPHRGDQDLFWNQTNWQALCKSCHDRKTKTTDRYVEYTYRF*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0025	cloud	direct	high	365	0.997	GCA_003944315.1_00604
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	119513	119647	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	21001	21135	GCA_003944315_1_2_120	GCA_003944315_1_2_120	+	199528	.	.	hypothetical protein	MKSLNPWETKTDAPSNVKNRKIQKGVHKNRFLLTPNIIYDKVFH*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0026	cloud	direct	high	134	0.993	GCA_003944315.1_00605
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	119706	120110	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	21194	21598	GCA_003944315_1_2_121	GCA_003944315_1_2_121	+	199528	.	PFAM:PF05766.11	HNH-endonuclease	MNDFKAKQVWKMRNEGLGYRKIANLLDLSLTAVKRYCSTNPHLKGYGQAVVAMISDGQRNGQLCKECLKPIEQPRKGRTKQFCSDSCRRKNWVTQHPEKADSHVCELCGKTFTAYGSPRRKFCSRTCARTPRRT*	phrogs_hmm	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0027	cloud	direct	high	404	0.998	GCA_003944315.1_00606
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	120110	121357	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	21598	22845	GCA_003944315_1_2_122	GCA_003944315_1_2_122	+	199528	.	PDB:5HFJ_C	Adenine-specific-DNA-methyltransferase	MTKESMTWLTLTVDQLNSASYNPRKALKKGDKEYEKIKRSIQEFGYVEPIIVNYDMTIIGGHQRLTVLKDLGFKEVQCVQVHIEDENKVKALNVALNKITGSWNEELLADLMLDLQEADFDTDLTGFEFPEIDQLFSKVHNKEVNEDDFDVDEELKKPTVAKQGDIWYLGKHQVICGDSTLPETYITLMGDKKANLVLTDPPYNVNVEETAGKIKNDNMSDSDFYKFLFAMFVNVEQNMESDASIYVFHADTEGYNFRKAFKDAGFYLSGCCIWKKNSLVLGRSPYQWQHEPCLFGWKNKGKHQWFSDRKQTTIWEYDRPKLSKEHPTMKPIQLMAYPIQNSSMRGTVVLDPFLGSGSTLIACEETGRICYGIELDEKFVDVIVKRYFEATGDQSIKVMRDGKEIKYADLVEVSV*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0028	cloud	direct	high	1247	0.999	GCA_003944315.1_00607
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	121354	122622	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	22842	24110	GCA_003944315_1_2_123	GCA_003944315_1_2_123	+	199528	.	PDB:3ME5_A	Cytosine-specific-methyltransferase	MNQLTFIDFFAGIGGFRRGLELAGMTCIGYCEKDKFAVRSYQAMYDTEGEWYSDDITKLKPNDIPKADIWTAGSPCQNVSIAGKRAGLRAERSGLFFTLVDLLKSQSEEDKPEWLILENVKGLLSSRRGVDFLDYLLELDEAGYDLEWQVFNSKDYGVPQNRERVYTIGHLRSRGRRQVLPLQPESSGNLKQLVGGMQSYRVYDTDGISTTLVGTGGGVGAKTGLYLIDQSTTKPKVTDQARCITARYTAGSTKRTAMNSGVMEVQPILTPDRVNKRQNGRRLKEKGEPMFTLTSQDRHGVVEGIKVRNGTKQGYQVAELGDSVDLSYPASPTKRARVGKGIAHNLSCSGQMGVVVWNGRMVKIRRLTPRECFRLQGFTDDLFEKAQAVNSDAQLYKQAGNGVTVTVVYAIGKAILSCLNLR*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0029	cloud	direct	high	1268	0.999	GCA_003944315.1_00608
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	122685	122897	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	24173	24385	GCA_003944315_1_2_124	GCA_003944315_1_2_124	+	199528	.	PF14192.6	Domain of unknown function (DUF4314)	MNNGAKERVECLYPVGCRVKLLEMDDPFPPPIGTLGTVYGHDDLASVLVHWDNGSGLSVVYGVDRIVKVE*	hhsuite_tools	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0030	cloud	direct	high	212	0.995	GCA_003944315.1_00609
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	122902	123000	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	24390	24488	GCA_003944315_1_2_125	GCA_003944315_1_2_125	+	199528	.	.	hypothetical protein	MWELVVIDRGERHYVCDLLRESSTDPSYINGE*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0031	cloud	direct	moderate	98	0.99	GCA_003944315.1_00610
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	123510	123986	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	24998	25474	GCA_003944315_1_2_126	GCA_003944315_1_2_126	+	199528	.	PFAM:PF05119.11	Small-Terminase	MSDLAQRGRKPKPTGLKVLEGNLGKRPLNHKEPKPTKKAPRCPSWLEEDAKKEWKRMSKVLESMGLLTDMDMTAFAGYCQAYARWKEAEEFLTKHGSIIKTPNGYLQQVPQVSIAQTNMKIMLKFSEQFGLTPSARSRIQADSSDGEQDEMESLLREV*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0032	cloud	direct	high	476	0.998	GCA_003944315.1_00611
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	123988	125580	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	25476	27068	GCA_003944315_1_2_127	GCA_003944315_1_2_127	+	199528	.	PFAM:PF03354.14	Terminase-large-subunit	MTYHYKPSPFMLPTSHYDEKKADRAVAFIQNLKHTKGKWAGKHFLLLPWQEQIIRDLFGIVKEDGNRQFLSAYVEIPKKNGKSELAAAIALYLLYADGEASAEVYGAACDRNQASIVFDVAKQMVGMSNPLNKRSKIMGATKRIVNYNNAGFYQVLSAETGTKHGLNVSGLVFDEIHAQPNRHLYDVLTKGSGDAREQPLFFIITTAGTDKNSICYELHTKALDILSGRKKDETFYPVVYGLANDEDWQDEENWYKANPSLGHTIQIDRVREAYRNAIDNPAEENVFKQLRLNMWTSSTVTWIAEHVYDKGNRPIVESSLLGRECYAGLDLSSTSDITAFVLVFPPRTEDESYIVLPYFWLPEDTLPLRCRRDHVLYDVWERQGYLKTTEGNVVHYGFIERFIEDLSTKFNIKEIAYDRWNATQMVQNLEDMGLTVVPFGQGYKDMSPPSKELYKLMMEGRVTHAGHPVLKWMAQNVVMRQDPAGNIKPDKEKSVDKIDGIVALIMGLDRCIRHKGDDGSIYDQRGILSF*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0033	cloud	direct	high	1592	0.999	GCA_003944315.1_00612
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	125592	126833	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	27080	28321	GCA_003944315_1_2_128	GCA_003944315_1_2_128	+	199528	.	PFAM:PF06074.12	Portal	MGILELIGLKRARDKPTNSYEGSDFSYLFGRTTSGKNVNEMTALQTTAVYACVRILAEAIASLPIHVYKHTDEGKEQDVNHQLYYLLHDEPNPDMTSFVFRETLMSHLLIWGNAYAQIIRDGRGQVLALYPLLPDRMTVKRDDKGELYYVYQRSEEDNPNFKDKGNIILKKSEVLHVPGLGFDGLIGYSPIAMAKNAVGMTLATEEYGASFFANGANPGGVLEHPGILKDPSKVRESWNQVYQGTNNSHKVAVLEEGMIYKTIGIPPNEAQFLETRKFQINEIARLYRIPPHMVGDLEKSSFSNIEQQSLEFVKYTLDPWVVRFEQAFQKALLLPDEKKTYFIKFNVDGLLRGDYQSRMNGYAIGRQNGWLSTNDIRRLEDMNPLSKEEGGDLYLVNGNMTKLEDAGGFIKDA*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0034	cloud	direct	high	1241	0.999	GCA_003944315.1_00613
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	126826	127512	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	28314	29000	GCA_003944315_1_2_129	GCA_003944315_1_2_129	+	199528	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MHKFWNWAKNEGERTLFLNGVIASESWFGDEVTPQLFKDELLSEQGDITLWINSPGGDVFAAAQIYNMLMDYKGAVTVNIDGIAASAASVIAMAGTIVNMSPVSMMMIHNPATFASGDKREMEKAIQLLNEVKESIINAYEIKTSLSRQKLSNLMDGETWLNAKKAVELGFADQIIFDGTHDNDESQDAYAFSMQTVTNQVVAKCEQLIDKPKVAVSTLEKRLQLLKP*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0035	cloud	direct	high	686	0.999	GCA_003944315.1_00614
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	127528	128715	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	29016	30203	GCA_003944315_1_2_130	GCA_003944315_1_2_130	+	199528	.	PFAM:PF06673.10	Major-Capsid-protein	MDKILELREKRAKVWDKAKNFLDSCRDEKGMISQEDSEHYDKLEQEVVDLGKEIDRLERQERIERELSQATSAAIVSQPRTDAGGDEKTGTASTVYNQSFWKNVRQKNFFDVNNTLNIGNDGQGGYLVPDEYENRLIKALEEENFFRRLATIIKTSNGERKIPVVTGHGTAAWMDENGTYPESEETFGQVTLGAYKVGTAIKISEELIHDSVFDLESYMAEEFARRIGSKEEEAFLIGDGSGKPTGVFTTVTEGVTSTGANITFDDVMDLYHSLKSPYRKNSVWILNDSTIKALRKLKDNNGNYIWQPSVQAGVPDMILNRPYYTSSYAPEIASGQKVLAFGDFSHYWISDRQGRSFKRLNELYATSGQVGFLGSQRVDGKLVLPEAVKVLTMKG*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0036	cloud	direct	high	1187	0.999	GCA_003944315.1_00615
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	128719	128982	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	30207	30470	GCA_003944315_1_2_131	GCA_003944315_1_2_131	+	199528	.	CDD:cd08054	Head-Tail-Connector-Protein	MLTLLEAKIYLRVDTSGEDNLIKVLIATSEELCKDVLRVDELVDTPLIRSAMLYAVAYLFEHREEANHHDLKETLYHLLGGLRKEVF*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0037	cloud	direct	high	263	0.996	GCA_003944315.1_00616
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	128983	129312	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	30471	30800	GCA_003944315_1_2_132	GCA_003944315_1_2_132	+	199528	.	PDB:2KZ4_A	Head-tail-adaptor	MKIAPLNQRVLFKKRVITQDDIGNETSQFTNLFSRWASVNQANSDEIFEVGQTKRKLQLIVTLRYDSEVASLDTTNTQLIFQGKSFNILSIDHVFFEKKMVKCRVEEEP*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0038	cloud	direct	high	329	0.997	GCA_003944315.1_00617
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	129309	129668	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	30797	31156	GCA_003944315_1_2_133	GCA_003944315_1_2_133	+	199528	.	PFAM:PF04883.11	putative-tail-component	MRADELSRAIEKELEEYLHQTTETVVEAVDDVTDEAIATLKSTSPKRSGRYVRGWTSKETSSTSTGKTKTIHNRTPGLTHLLENGYAKQNGGRVSGRPHIGPVEQKAVQALEKKIRGNL*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0039	cloud	direct	high	359	0.997	GCA_003944315.1_00618
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	129665	129982	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	31153	31470	GCA_003944315_1_2_134	GCA_003944315_1_2_134	+	199528	.	PFAM:PF05657.10	tail-completion-protein	MSEKEFFKQLKALHLPIAYHHFEEGHSPSPPFMVYYSPQSENFGADNQVYHKGAQFILELYTRKKDLDVEGKIETFLTEQHLFFDKVETYIDTEQLYQVAFHFAF*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0040	cloud	direct	high	317	0.997	GCA_003944315.1_00619
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	129995	130585	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	31483	32073	GCA_003944315_1_2_135	GCA_003944315_1_2_135	+	199528	.	PFAM:PF04630.11	tail-tube-protein	MAEKNKVTFGLQDVHWAEVTTEGSDGALTYGNVERLRGAAELTLEATGDSGSYKADNINFYTTESNDGYSGTLKVALLTQEFLTRVLGETLDDTNKVITESSNATRKNFALMFRFEGDKKETLHVLYYCYASRPTVGSKTKNGSDINEVELKFTASPRPLDQVVRRRTTEETPETVKKNWFKSVYEPTVASGGSRT*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0041	cloud	direct	high	590	0.998	GCA_003944315.1_00620
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	130582	131001	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	32070	32489	GCA_003944315_1_2_136	GCA_003944315_1_2_136	+	199528	.	PFAM:PF12363.7	Tail-assembly-chaperone	MRKQVTICGKVYPLASNAYTPIAYKEQFGKDYFQDLFQMINAKSILDQLNQLEEGEELTAQNMDVSILSDFDMTFFHRLFWVFAKSANPRVKAFDVFFMEMEELPIQEIGPVLMEMLNQGMSTRKKSMKPMKRVKKSSR*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0042	cloud	direct	high	419	0.998	GCA_003944315.1_00621
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	131040	131162	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	32528	32650	GCA_003944315_1_2_137	GCA_003944315_1_2_137	+	199528	.	.	hypothetical protein	MDDLKHISIGMALDYQTDYVALRSDKPQTRRATQADFDNF*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0043	cloud	direct	high	122	0.992	GCA_003944315.1_00622
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	131180	134299	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	32668	35787	GCA_003944315_1_2_138	GCA_003944315_1_2_138	+	199528	.	UniProtKB:R4KJ43_9FIRM	Minor-tail-protein	MAGNIKGITIEIGGDTQPLQRALKGINKESAESTKELKQIDKALKFDTGNVTLLTQKQEVLSKQIATTKEKLETLRQAQSQVEAQFQRGDIGAEQYRAFQREVETTQNVLKSYETKLEGVNRALDSHGNTVESNRSKLNSLEAEQAQLASESEKLNSTFRLQESQLGSNASESEKLALAQRRIASQSELVERQIANLERQLELTKSEYGENSVEANRLEKTLNDTKTAYNNLQQEMEGLSNASQQSAASLEQTNGLLKADILMEFGDRLGELSQKLIEFGQQSLEAFREVDEGMDIIITKTGASGKALEGMQDIATELATSIPTDFATAGSAVGELNTQFGLTGDALSQASALLIKYSEINGSDVTQSAISAKQAIEAYGLESKDLAMVLDTVTFTSQQTGVGVQDLMSKVVSGAPQIKSLGLSFDEGVALMGRFEKAGVDSSAALSTLSKAAVNYAKDGLTLQDGLAKTVEQIKNSTNETESLTLASEVFGSKAAPRMVDAIKRGAFSFNDLSGTAKNALGVVTSTYEATLDPIDKFTIAQNTAKAAMAEVGGVLAEALAPVLELLAQLLQAVANWFSNLPSPIQTFIVIMGGLITVVGLLLPGLLALQAAAVAMGTTIGGLVVAAAPIVGTVLGIIAVIALLVVGIQELWQNNEGFRTAVIEIWNAIYAFISVILQEISTFIMTIWGTLTTWWTENQALIQVAVETVWNAISTVIQTVMSLIGPYLEAAWANIQLIITTAWDIIKTVVETAINVVLGIIKAIMQVITGDWSGAWETIKGVLQRVWQAIQQIVTTILSAIGQFISNTWNGIKDTISNVLTAISGIVSSIWNTIKSVITSVISSIVSFVSSGWSGIQQTISSILSGISSTVSSVWNGIKNSISNAINGAKNVVSSAINAIKNLFNFKISWPHIPLPHFSVSGSANPLDWLKGGLPKISIAWYAKGGILTKPTAFGMNGNQLMVGGEAGKEAVLPLTKQNLAAIGEEIASTMGTGGNVINVSITDVVIREEADIKRLANQVAERIHDELTRIQSLRGVRL*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0044	cloud	direct	high	3119	1.0	GCA_003944315.1_00623
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	134296	135021	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	35784	36509	GCA_003944315_1_2_139	GCA_003944315_1_2_139	+	199528	.	PDB:2X8K_A	Distal-Tail-Protein	MIQHNALIIDGLSTASFPYKILVEDRPSFHIPTSKSQLQEHDGLSGGLVLTNKHRKVIEKAYRIHLIAATEEQINEFSALLTREGFWLESERMKTTRYWCYKVDSFDIVQDNLGVFTLEVTFLCHPTRYFNDVSEYTLTKNGTIPLLGSALSYPKITVSGKSTGETSFTIGEQVIGLEQLNKTLVMDNDPHHPSFLTESGELVHWSGDFITLDANQKDKKVGVVLGTGITSLHIEILWGWA*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0045	cloud	direct	high	725	0.999	GCA_003944315.1_00624
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	135021	137909	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	36509	39397	GCA_003944315_1_2_140	GCA_003944315_1_2_140	+	199528	.	PDB:3GS9_A	tail-protein	MLFLLDGQTKTPKWNGLPLHETLSAEVEETLNGDFTLQFDYPITDSGIYKELVTDKLILCPVPYANKQLFRIKKPIEENDRVRVTCQHITDDIMRRSILPVSNQNVTCQSALGQLISKAKRDIARFSFDSDITKKRSFNTTETATLYKVLMDGKHSIVGTWEGELVRDNFLFTIKEHRGKNRGVAISTHHNLEKFDRTRSSQSIVTRIYASSTFKPEGEKEEKTLSVMVESPLIHQYPYVHEAEYENNNLHTEEELRQWAMAKFSNDHLDQVSEVIEIEAFELDGQEVQLGDEVTLKSRLHQVDVVKKVVAYRFNALTEKIISISFDDTVSFGGQGVSGNPISSVANELLTLNDGKVQRQIERERANLSLVLDSNMSRVSKDVEDGIERAKAEAVRSGNQAAVDYLSSEAAEIRFAAIQKAKIDELTVSNSAWMRRLVSHQVLTEYLNAIEVNANKVVIPGSHKPVFSLDSNGNISIDTPLLKVRGEELATKSQLSKLSLTPGPKGDRGISISQIEEYYLVSNQKTGVLTSTSGWSKTIPVLTDTSKYLWNYKRTVFTDGNETLTTPVVIGVYGNKGDIGQTLYTWKMYADSDKGEGISSSPKGKRYLGLAVNRPTATPSTNPSDYTWSSFFEGTVLGGRNYIDDYAMRETSFTNLQSEWRKEIVEDSTSVSDISIKMTCTKSGSGGFKRDFFDLRTCIGQTMTFAVDMKTSRAVSMMIGSELGGTKSIQLTTNWERVVSSWKVSSNVAYSFVFTLSSGTWVQGDVVWLRNVQLEDGNVATTPGPSLADLMKQIDGKADQSFMKQQLDILTEKTESIRVDMEARALASEVSDWLKTYKEFEKSNKETLTKFNQDFVANTQRIAAIEADLKSNALLLQFVNTYLRAGDNGVIIGKKDNSEFIELTPQGMMIKSAGNAVMTVTSGVIKIHHGVFVETLQVGYYRLEAARHNPKHLVCRFIDSKT*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0046	cloud	direct	high	2888	1.0	GCA_003944315.1_00625
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	137922	139778	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	39410	41266	GCA_003944315_1_2_141	GCA_003944315_1_2_141	+	199528	.	PDB:5IV5_CF	Baseplate-wedge-protein	MADYGSNNDRGYNLLLRVEETGTSTANNTSTVRVQLWLRNGQTTFGMYNCSASVSIDGQTLSWSGRPDMYSMNSSLHLIDKTITIAHNSNGQKTIGFSATFSGSGGWSPGTLNTGYQSLRLRDIPRSSTASVSGNMMGSPITISITRASGDFTHKVTWQFGSLSGVVATGATTSCSWTPEVAKLAPQIPNATSGIGTILVQTIYGGKVIGESRIQVTLQLPSSVVPSLSSISLSDLNTIAQNAITGNTFVSLESNPKVTFNGATGIYGSTIPASGYRAEVFKFEGNSWIQLQNVATAQNGGVGGINHVGRAKISAFVTDSRGRQSPRKEVEISLLEYFKPILSFTSVRVGTAMNQLNVIRKVKIAPLIVGNSQKNRATMTWDILDLSTGTKTTNVGGAANWSTTTEHTKENFQATLNGSYDQTKSYTIIGHLRDLFYETDFEFTVGPEKVVYGLSPTGMGIGKAWTRGVLDVDGSQPSYFDGDIIMRNKKLIDIFYPVGTIYESTSYANPSTFMGGKWERFGNGHVLVGVSETESEFNTVSKTGGSKTHTLTINEMPVHSHPQYVSANSGNQAIRRDYSSDGGASLYPQGNNTGNSGGGQAHNNLQPYITVYRWRRTA*	hallmark_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0047	cloud	direct	high	1856	0.999	GCA_003944315.1_00626
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	139789	140205	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	41277	41693	GCA_003944315_1_2_142	GCA_003944315_1_2_142	+	199528	.	PFAM:PF05105.11	Bacteriophage-holin	MHLAVSTNKLVFSGIGGVIGSIFGEIDGFLYGLLIFMLIDYVTGIMAAIVEKNLSSSIGKKGIFKKAMIICLVAVAHMIDQHVLKQGGAVRTAVIFFYFSNEGLSILENATRIGLPVPNRIKQVLRQLNEDKEDENDK*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0048	cloud	direct	high	416	0.998	GCA_003944315.1_00627
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	140195	140977	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	41683	42465	GCA_003944315_1_2_143	GCA_003944315_1_2_143	+	199528	.	PDB:5UDN_B	lysin	MTSKEKVVANALSKVNTKVTVPTNPYGGQCVALIDKIVQEETGKNMAYTNAIDCLDKAKANGFQVTYDAVGVNPQAGDIYVIRVPSHSFGHIGVCLADSDGTGLEGVEQNVDGYLDSNRNGINDQLEVGGGGYTRRVSRKWYSDGRLVDRHSGGLVGYMVGWFRLPYEVATSTKKVETSEDEDMKNFVVRSKSGKQGYVAVVNGAVFGIGHIDTVVQLQSAGAAHLTLDDDDFNRFLESQKFDDEKLVASVQALEKAIKQ*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0049	cloud	direct	high	782	0.999	GCA_003944315.1_00628
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	141082	141243	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	42570	42731	GCA_003944315_1_2_144	GCA_003944315_1_2_144	+	199528	.	pfam20612	hypothetical protein	MTNDKLQDEMTYQLTIIQADRLLKSRIISEEVHQQFKEKMLEKYQPFISRLST*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0050	cloud	direct	high	161	0.994	GCA_003944315.1_00629
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	141301	142539	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	42789	44027	GCA_003944315_1_2_145	GCA_003944315_1_2_145	+	199528	.	PDB:4BQQ_A	Integrase	MRIVRRIQPMMTPQKPKLRVAAYARVSDSRLHHSLSTQVSYYSRLIQSHPDWELVGVYYDEGISGKEQSNRQGLQDLLKACDDGKIDRILTKSIARFGRNTVDLLSTVRVLRQKNIGITFEKEGIDSLSSEGELMLTLLASVAQEESHNISENLRWQIKKKFEQGQPHTPQDIYGYRWNGENYVIEPDEAKVVRQVFQWFLDGDNAPMITKKLNEQGVLTRLGNPFTVSSVREFFKQEAYFGRLVLQKTYREPFSRNPKRNNGQKNKYIVEDAHEAIVSKSYFDVVLQEKERRYKVMYQESHMHKGTFRELIECSHCGKIMITRVDSKKVHRTIRYCCRTRDRFGTSSCPSKTLSEKRILATFEDKIGFKPDKNWVTENIKKVIYDSSVGLITVFPIKGRKYELKVRKEHFL*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0051	cloud	direct	high	1238	0.999	GCA_003944315.1_00630
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	142536	144101	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	44024	45589	GCA_003944315_1_2_146	GCA_003944315_1_2_146	+	199528	.	PDB:4BQQ_A	Integrase	MKNVITIEANAPRNSELASISLPKKRRVAGYARVSTDHEDQTTSYESQMRYYAEYISTRSDWEFVKMYSDEGISGTNTKLRVGFKSMIEDALAGKIDLIITKSVSRFARNTVDSLTTVRKLKEVGVEIYFEKENIWTLDSKGELLITIMSSLAQEESRSISENVTWGLRKQFAEGKVHFPYTNVMGFEKGENGEIVVNQEEAKTVRYIFQQALLGKTPYSIAKDLTQQGILSPSGKNHWSSVTIKRMLRNEKYKGDALLQKTYTIDFLSKKKNINKGELPQYYVENNHEAIVDKETFDAVQASLDRKEKGKGSTTLFSSKLVCGDCGHYFGSKVWHSTSKYRRVIYQCNEKYKGEKKCTTPHVTEDEIKDWFVSAINKVISNKDEIISNLETLLEISGTADLEQRMKELETEVEVVSQMISKLVTDNAVMPQNQDVYQEKYRNLVDRYDALIVELESVEKEHLDKAKRNKELQAFLKTLKSQECLVTEFDDLLWETAVERIIIKENRNIEFIFKNGEVTVH*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0052	cloud	direct	high	1565	0.999	GCA_003944315.1_00631
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	144160	145056	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	45648	46544	GCA_003944315_1_2_147	GCA_003944315_1_2_147	+	199528	.	.	hypothetical protein	MDLDLGNYLGVFSSVEIKDLLLLQSSDLYDDNIPESHHLYMIFGFEKFYVDSVTKNETKENELIVKVKTADEALELIWEDEENIVSFDKSLDNRCVIINGVTYQILDLILDSIIKNGNQIVSEILYIGQAKGRTESRNTGKRLASHKTLQRILADCHDYKKDVDVRVVSFSIGENVMWTTLTTPETSNAKIEDIYEPKSKEFKLKISDASLINLVEAKLINYLKPEYNDVYKNKSVPSKEHKTYIEYNKFFNSMNIDLSKLDNFYFKQPNIDFNPRRQFISNKLNPTEYMEIIRDSLY*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0053	cloud	direct	high	896	0.999	GCA_003944315.1_00632
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	145132	145677	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	46620	47165	GCA_003944315_1_2_148	GCA_003944315_1_2_148	+	199528	.	COG2333	Metal-dependent hydrolase, beta-lactamase superfamily II [General function prediction only]. 	MLEVAKHFSIKEIYVSKGSLTQSDFVEKLERMQTGVHAVEVGDSLPIFDGALQVLYPEETGDGSNDDSVVLYGQFFGTSFLFTGDLEEKGEATLMRRFPQLKVDVLKAGHHGSKGSSSPEFLHQLQPKIALISAGKNNRYKHPHQETLDRFKNIQTQIFRTDEQGAIRFSGWGSWEIETVK*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0054	persistent	direct	high	545	0.998	GCA_003944315.1_00633
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	145784	146719	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	47272	48207	GCA_003944315_1_2_149	GCA_003944315_1_2_149	+	199528	.	COG3152	Uncharacterized membrane protein YhaH, DUF805 family [Function unknown]. 	MFSAYKKFWTRYADFSGRSSRSDYWWVVLCNFLITLPFSLIALFGFLIPLFSEIYYAGLYDYEPDLSGAMAGAGLAVFIMFLLAIYGLATIVPHLAITVRRLRDAGFHWAFIFLGVGPSIASLIPVLNILAALVSLPCGIALIVLLCQASKPAQPVKGAPYGQQGFQGQQFGQAQQPVQNQQFVQPGFQGQQQPTQNQQFGQVQQPAQNQQFSQPASQEQPFAQQQAPVQNPEFGQPQQPFGQNQVNQPTQPFAASQAQTQESTQSAFSASVSEPAESVHSVEAHQSQAETAEQALGTASEQINNSESISQ*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0055	persistent	direct	high	935	0.999	GCA_003944315.1_00634
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	146962	147477	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	48450	48965	GCA_003944315_1_2_150	GCA_003944315_1_2_150	+	199528	.	TIGR02950	RNA polymerase sigma factor, SigM family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:	MWGGEIIKLDEYENILIGFAREIVFYLQKSGASKAEAEDVVQDVFVKMLETDLVIPAEKMRAWMYRVSIRRYIDRYRRDQHYLEILQKEFFKQDVIQPFENDYYELLRMTIEELPTKEAMLLDLYYFQNFTVKEIAHIMSYSVSKVKVQLMRSRIKLRHKLEKKGYKNGNI*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0056	persistent	direct	high	515	0.998	GCA_003944315.1_00635
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	147464	148462	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	48952	49950	GCA_003944315_1_2_151	GCA_003944315_1_2_151	+	199528	.	pfam13791	Sigma factor regulator C-terminal. This family is the C-terminal domain of a sigma factor regulator, this may represent a sensory domain.	METFEILAKKSKRKRLWKTVAISSLVSLALLLLLGKGLIELASSNGRNLQKEYEVMSEIAYPNVDYDSLYYTQNSLFSGTLHSDRFKDLDGVKVAYPSYEGNYSLIGAFRDPTAEGTYLSLSGTYTRTLRQKYPVFYNINAKGTIDTKRIPQELASVKEMPNQLVEVALTFDKAYTYKEIQQMIPNNLKINWYWIGSQSEDVDNTGALRTDPKTTYGANASLLFTYDSDVRKKAKEAKKEQQTFLDYLKKADKNLFPSVSGYNTYNDVQSYLNKFSQLDIREAENRDQLTFSGVILTGKAENFTQLEGKEWIYASSIGASVPNQPYYKLDKE*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0057	persistent	direct	high	998	0.999	GCA_003944315.1_00636
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	148585	149781	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	50073	51269	GCA_003944315_1_2_152	GCA_003944315_1_2_152	+	199528	.	PRK12736	elongation factor Tu; Reviewed	MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPSSVNQPKDYASIDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKIDLVDDEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDTKYEDIIMELMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEIEIVGIKEEIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGIQRDEIERGQVIAKPGSINPHTKFKGEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEMVMPGDNVTIDVELIHPIAVEQGTTFSIREGGRTVGSGMVTEIEA*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0058	persistent	direct	high	1196	0.999	GCA_003944315.1_00637
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	149921	153208	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	51409	54696	GCA_003944315_1_2_153	GCA_003944315_1_2_153	+	199528	.	PFAM:PF12705.6	PD-(D-E)XK-nuclease-superfamily	MKLLYTDIRSPLTAHLAKQAQDLAAAGKRVFYIAPNSLSFEKERAVLEALENHASXAITVTRFAQMARYFVLNDVQDGQPLDDIGLGMLFYRILSEMDDRELKVYGRIKKDAQFIQQLLDLYHELQTAQMTFADLNYLEEPEKREDLLKIFTAFSAALQAGNYDATSKLTIFAQHILAGDLDGELANLALVIDGFTRFSAEEEYLVDLLHRKGVEIVIGVYASQKAYRTAFREGNLYQASVDFLLKLAQTYEVKPEYLAGDSTQSDDAFGKISKILESRYDFSETHVELTEDDRSHLEIWSVRNQKEELEYVAKSIRQRLHDGARYKDIRLLLGDVEAYQLQLKTIFDQYQIPFYLGRSESMAQHPLVQFLESLERLKRYNFQTEDLLNLLKTGLYGGLRQEELDSFEQYLRFAEIKGAAKLGRDFTINRQEKFDLKRLNVMRRSLITPLLDFFKSRSQTATGLLAKFTNFIKEVRLDTNLTGLLEDASQQEVERQEEVWKTFCHVLEQLAQVFDGSKLKIDDFLALILSGMLLAKYRVVPATVDVVTVQSYDLIEPMAAPYVYAIGLTQERLPKLAQNKSLLSDEERQALNQATGDEAELQIASSENLKKNRFAALSLLNSATEDLVLSAPVLINEVEDAMSSYLTELEIAPISLPIISKLPQASSDDIGTYRALLARVIDLYQEDIDREWTLEEQTFWAVAIRVLRKKLAAEGISIPQISKELKTEPLKSETLQALYPSEQPLRLSASALNEYFKNQYAYFLKYVLRLQEEWTIQPDARSHGIFLHRIFEKVMQEHLEQDFDTRLQRAMEETSWEAEFETVYGENGETQFARRLLLDTARATGRILAQSDGLEVIGEETDFGRDDRPFLLLDNGRALQVSGKVDRIDRLTETGSLGVVDYKSGDTKFSFEKFFNRLNSQLPTYLAAIREMPEYQEDKGIFGAMYLQMTEPLASLKDTKALDEAVKQVMKSQVYKGLFLADQAKDLGTNYEKSKVNLLTKEELEVILAYNAYLYQQAAEGILAGRFAINPYTENGRSIAPYVDQFKAITGFEANLHLGQARQLTKLNLEQYEKRPTGEKLRQAWLEKIKEELDK*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0059	persistent	direct	high	3287	1.0	GCA_003944315.1_00638
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	153205	156876	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	54693	58364	GCA_003944315_1_2_154	GCA_003944315_1_2_154	+	199528	.	PDB:1UAA_B	Replicase	MRRIPFLKEQDILVKQAEEAASDKPQKRTPEQIQAIYSSGQNILVSASAGSGKTYVMVQRIIDQILRGVEVSQLFISTFTVKAAGELKERLEKELSLVLKETSDQELRQHLAQQLAEIANADIGTMDAFTQKVVNKYGYLLGLAPHFRILQSASEQLILQNEVFDQLFDTYYESDQQELFSRLVKNFTGKRKDISGFRQQIYSIYSFLQSTSNPRKWLEETFLLGYETSDFEAERERILSGSRQSLLDLEDFFQSHLAHEGQAFAGAKYQENVQAALDILAELTEQTGSEQLLDLIQRFLELAKTSNHQAFTARVGKNADELKKELAQIYNEARKPLIERIKELDVRLYHLNFMEQHQSEALPQLDLLRDFVRDFSQAYLQRKVAENAFEFGDISHFAIEILENYPEVRRFYQDKYHEVMVDEYQDTNHTQERMLELLARGNNRFMVGDIKQSIYRFRQADPQIFNDKFKLYQADPSQGKLIILKENFRSHIEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKRDPNPANQAEFLLYDGSADSEEEDSDQGLPSISAGEVALVIKEIIRLHNEEGVDFKDMTLLTASRTRNDLILAEFDRHHIPIVPDDGETNYLQSVEVMVMLDTLRTINNPLNDYALTALLKSPMFDFDEDELTRLALQASSSKSMENLYEKLRNALTDQGLEPQLIHGELRKKLQHFQETLNDWRNYSKTHSLYDLIWKIYQDRFYYDMVGALPNGEQRQANLYALSLRANDYEKSSFKGLSRFISMIDRILKNEHDLASVPLAAPKNAVQLMTIHKSKGLEFKYVFLLNMDKAFNRQDSSSAIILSRQKGIGIKYVADVPVVAQDPHAPKQIRISMETLPYQQNAEELKLASLSEQMRLLYVAMTRAETKLYLVGKGKQAKLQERKWGTSQNGRLSSSLRSQLTNFQDWLYAIQSVFEKENLAYQTRFVTDQELTDEQIGVVEQADPIPVDDLTGNRQSEDIRRALDILENVDRLNSLYQAAIELPSVRTPSQIMKFYEPVMDSEGLDIMDAPRSYQTQLSFELPDFGKKKQVTGAQIGSAVHELMQRIPLDRPITKTSIRQALTQVQADAVVKKEIDLAKIEAFFATELGQLIQQEADHLHREAPFAMLKQDPASGQDFVVRGILDGYLLFDDRIVLFDYKTDRYHEPTGLVERYRAQLDLYAEALSRSYGLSQVDKYLILLGGTELQVVKVD*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0060	persistent	direct	high	3671	1.0	GCA_003944315.1_00639
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	157018	158016	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	58506	59504	GCA_003944315_1_2_155	GCA_003944315_1_2_155	+	199528	.	CDD:cd03814	GT1-family-of-glycosyltransferase	MKVLLYLEGKSVLEKSGIGRALQHQMHALDLAGIPYTTDVLGDYDVVHINTYGPRSLLLLHAAKRRGKKVIMHGHSTKEDFENSFIGSNLFAPLFGKYLAHMYKMADFIITPSEYSKKLIESYGVTTPIMAISNGIDLSKYKKDEXKEEVFKKHFQIAEGQKVVICAGLYFRRKGIEDFVEVARRMPDVRFIWLGSINLWLIPRKIRDLVLYNHPENVEFPGYFKGAVFQGAMSGSDAFFFPSYEETEGIVVLEALASGQHVVLRDIPVYNGWIDEDSAELCHNVDEFVESLRKVLDGKVDKREAGYRVAESRSIDDVALKLVKAYQTVLEM*	common_virus_hmm	common_virus	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0061	persistent	direct	high	998	0.999	GCA_003944315.1_00640
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	158018	159331	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	59506	60819	GCA_003944315_1_2_156	GCA_003944315_1_2_156	+	199528	.	cd03817	UDP-Glc:1,2-diacylglycerol 3-a-glucosyltransferase and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (EC 2.4.1.337, UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.	MRIGLFTDTYFPQVSGVATSIRTLKTELEKLGHKVFIFTTTDKDVNRYEDWQIIRIPSVPFFAFKDRRVAYRGFSNALEIARQYQLDIIHTQTEFSLGLLGIWIAKELRIPVVHTYHTQYEDYVHYLAKGMVIRPSMVKYIVRGFMSDLDGVICPSEIVYDLLVGYKIKAEKRVIPTGIDLAKFDRPELSREDIKKLRFKLGIAEDEVMLLSLSRISYEKNIQAIVEALPMVLEENAKVKLVIVGDGPYAEDLKALVTQLHIKDSVIFTGMIAPSDTALYYKAADFFISASTSETQGLTYLESLASGTPIIAHGNPYLDNVISDKAFGTLYYESRDLAGAILEAILATPDMDEKKLADKLYEISAENFGRRIYEFYLDLTISKDFHNDLNPEETMAKRLAKTIVYLPGKIMSLPVNSSTRMIKASKKQIKNIRKYWE*	mmseqs_cdd	nonviral_gene	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0062	persistent	direct	high	1313	0.999	GCA_003944315.1_00641
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	159368	159733	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	60856	61221	GCA_003944315_1_2_157	GCA_003944315_1_2_157	+	199528	.	PF10852.8	Protein of unknown function (DUF2651)	MKVHKKEIFFLLPLFFFYFVFYILLRYGPMDSILSKGLVVGNVLIYSPLATLLVSLLYAALYGFSLRFSFLVALLFFLTIFTFGEWIPLYHAAYFLFSLAGNGLGHVIYRFTRKNSRAENQ*	hhsuite_tools	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0063	persistent	direct	high	365	0.997	GCA_003944315.1_00642
GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote	cenote	CDS	160044	160421	GCA_003944315.1	RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315.1_RJPQ01000002.1	GCA_003944315.1|RJPQ01000002.1	GCA_003944315_1_2	GCA_003944315_1_2@C9	61532	61909	GCA_003944315_1_2_158	GCA_003944315_1_2_158	+	199528	.	.	hypothetical protein	MKKYLSWMMACTFLLVYVWLMNTLSLWGTENIVVFSFFLLIPLLPFLAPFLGILMFFNNKKLIITGYLLSLTAGIYLVNAIKSYPIRIYMRGEMTQEEYLSLILSLVGYLFISTLFFIFRMKKLK*	.	hypothetical_protein	C9	61909	98513	160422	GCA_003944315.1|RJPQ01000002.1@region_98514_160422@tool_cenote_CDS_0064	shell	direct	high	377	0.997	GCA_003944315.1_00643
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	54255	54491	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	1	237	GCA_003944315_1_5_44	GCA_003944315_1_5_44	-	122744	.	.	hypothetical protein	MQEKNKTSRNIGILSIVGSLWLPLPGIILGTLAIIEANTRQKESGLDYKTERIIAIVGIVISAINWIAGILLTMNGFV*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0001	cloud	direct	high	236	0.996	GCA_003944315.1_01034
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	54575	54955	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	321	701	GCA_003944315_1_5_45	GCA_003944315_1_5_45	-	122744	.	cd00158	Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	MGIWTLWAILLGMLAWMGFNYFRIRRAAKVVDNSEFEALIRQGQLIDLRDPSDFHRKHILGARNIPSQQLKSSINALRKDKPVLLYENSRGQRVTNAAIYLKKQGFNDIYILSYGLDSWTGKVKTS*	mmseqs_cdd	nonviral_gene	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0002	persistent	direct	high	380	0.997	GCA_003944315.1_01035
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	54957	55175	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	703	921	GCA_003944315_1_5_46	GCA_003944315_1_5_46	-	122744	.	pfam06014	Bacterial protein of unknown function (DUF910). This family consists of several short bacterial proteins of unknown function.	MKTLYDVQQFLKNFGIIIYMGKRLYDIEMMKIELERIYDAGLMDKLDYLEAEAVLRREHQVELKXLEDKGRN*	mmseqs_cdd	nonviral_gene	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0003	persistent	direct	high	218	0.995	GCA_003944315.1_01036
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	55594	56334	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	1340	2080	GCA_003944315_1_5_47	GCA_003944315_1_5_47	-	122744	.	PDB:4OLS_C	Endolysin	MTTANELVQFTIGLANSGMGVDKDGFAGTQCADLLTYPSKHFFGVDLWGNAADLLDSAEAAGWEVHRMPTDENPRAGAFFNMNAWFGGVNYGHCGIVIEDSDGITMRTVEQNVDGNADALIVGGPARYNNRGFEDVIGWFYPPYSDGAAPATPADVTPTSDEIELTPETGTFKVGEAAINVRRAPNLNGEIVHVYEPGESVNYDSKGSANGYRWISYIGQSGNRNYMAIGQTDEAGNRITLWGDLS*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0004	cloud	direct	high	740	0.999	GCA_003944315.1_01037
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	56427	56687	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	2173	2433	GCA_003944315_1_5_48	GCA_003944315_1_5_48	-	122744	.	PFAM:PF04531.12	Bacteriophage-holin	MNKINWTVRLKNKNFWLALVPAIALLLQAAGDIFGLKLELGVTIDKILVFINVLFALLVLVGVVNDPTTAGLGDSQKALSYDEPKK*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0005	cloud	direct	high	260	0.996	GCA_003944315.1_01038
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	56684	57091	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	2430	2837	GCA_003944315_1_5_49	GCA_003944315_1_5_49	-	122744	.	UniProtKB:A0A075EHP3_9CAUD	holin-protein-	MNHLIDFVDKLTPVLVVIIPSYFSYRSNQNSKETDKRIEALVEDLGDLKESVTNIQNIGNRNNQDLNLIQKGLQRLQRFRLQENLKKALRRSQTTQHELEELSRLYESYVELGGNGAIKLLFEKFSKLPIKEDKV*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0006	cloud	direct	high	407	0.998	GCA_003944315.1_01039
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	57104	57358	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	2850	3104	GCA_003944315_1_5_50	GCA_003944315_1_5_50	-	122744	.	.	hypothetical protein	MALEITKTTKIVGRIKIDDTVIKTMTADIDDKGVTTPNDWVDNAEAYAANRHEVRKQEQAFQNAVYATEDAIIAELEAKGAEKK*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0007	shell	direct	high	254	0.996	GCA_003944315.1_01040
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	57361	57552	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	3107	3298	GCA_003944315_1_5_51	GCA_003944315_1_5_51	-	122744	.	.	hypothetical protein	MDNKFYNLMLAGYKERLDNSTLGEIELKARLILEQEKNAELQAKVEELEALLAKETEPAKEGE*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0008	shell	direct	high	191	0.995	GCA_003944315.1_01041
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	57562	61728	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	3308	7474	GCA_003944315_1_5_52	GCA_003944315_1_5_52	-	122744	.	PDB:3GUD_A	Neck-appendage-protein	MKNNVRIAIRDSTDTHVVGFFDNQNGIKYHAADLTRFLKGSCSYLVIKYRSKDIAKVKSGCRLAFRFKGKDYWMTIKSIKKTGYQMEITAYSLSLEANEEKRGAYKASRAMSIREYVDVFDPEHALEVGINEIADKSIKLEWSGTDTVLARLYSIANSFGAELEFVTELNRDYSLKRHILNIYRAGNLGKVKTGLPIRVGKDLKVINYSDDINDIKTAIRGSGKDGLTIAGLDKKIYDDKGNLIFYSQGNTIYAPQSRDQFPSVTKKTDDGWIILENGETEHASKEALFGYLLSELKKRCVPKISYSTEGKVNGEIGDTLTLIDSEHYAPPLYVQARISEQTESLLGAKTDKTTLTNFERKSSQIASELLKRVEELAEEAAPYVIKLATDKGVVFKNNQGESTVFPTLKKGNKTVECTWKWLIDNEDFGQAPNHKVTAAGMRESLTLTAIALVKGQEVAREQLTFTNVNDGQNGAKGDPGPQGPKGSTGATGATGATGARGPQGERGPQGAVGPQGPKGERGDPADTAELKKAVTAAQTQLTDVKNNLEGVRANLTQAQSQLSTNIAQIRSDVGAIRTQQTVYEQSNTQNLARITGKLGDKASKAEVEQTAAGIREEIASQVVGGRNLLKGSKGPFKPNRNPTNFDNNVLYHNETSVYMVNGQRYRISAKTDGTFTSHHDGLKESDNVVLWIMDKTVSNYQIVSDAKTGTTGTEFVWNRPTGTYHLRVNTYHKDTQKLKSVWEVKVEQGSFKTDWSPAPEDTEGLITEAKATFERTAQGLRTDLSAVQAYVSTDGTRAEALLSHSREETARQLTAERKLIEAGYVAKATYAEDVRGLTRRFEELTVGGANLLAYANFNSEGYYQNGLKRDRNYVYSNLIEIKSTDYILQVWELEPQGKRLWVGLQLFDEQRNPVANGYSTFWFNGYLKRTIKPTQNARYLAISFENLILDKDKAKFKLETGTIPTDWSPAPEDTTAYADTKLAEYKQDIDGQLASVQAALNTANGSLTSFNTWKQSAQETLNKVGKVETGLNETKTSFAEFKRTAEGQLSTITQQVAGKVSQTELTQRANQITQAVQELSNSVLRKSQVKINEGGIISSVEKTINGQTLASMIAQRSENVEIIARLLKVKGDMIVNGSITADKLNIVGELSALSANLGRVRSGEIVNEYRTNSTNGEVVIGNNVKITNYNRSGPRIHIPKEEIMLLPNGLLMNAYDNRDRVSHTMRVSPEVMEFQKINYAQAQGGTGSWSLGYSNSYSMLSIDVALQKIRLQATSNLMWGVSATFVRIGNLVTISVTRIITNINQIVENARASERIPNGFRPISQAHLTLTGNVNATIDATCIVHLETDGSIRFTNNKTGNHVWSGTVTYTTVDDFPIVGNIPNGKLI*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0009	cloud	direct	high	4166	1.0	GCA_003944315.1_01042
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	61728	63122	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	7474	8868	GCA_003944315_1_5_53	GCA_003944315_1_5_53	-	122744	.	PDB:5LY8_A	Distal-Tail-protein	MSGAEFVKTRKKLKKISVPFYVAYDSVADYDALQTALNVSEPKELTFSHLPDRVFYAIPGGDLNFKEIRFNGKGTINFNIADGLGHAKNPKRFEFTKNAQGIWEAIINNTGSEPVPIDYKIKLKKESGFVAIVSQYGAIQYGKFEESDFVQEKKNVTLASNQGGDFANWQNGTVFYENQGKKAVTTMSADTAFNGRLGLLPRGFNNTGNNPFFGAIKEFNLSVGATEWYIWARAWFETGLMGQTGAWCLAVVDNANRFIAGMAIEKHDRVGNRASVYFLLGDGKGGSHIKHKIDFTPSFWVTDNPYGTEARNQNRNMFDLRKEGDKVTFFWYGQYFSYFESGIKNVEASKVQFFCGQINGRNTNDQIVTHQYLNDFSFFKLNVPFWRDVPNRYPAHSELFIDASGEINPDEPGRLYVNGLLAPDDEILGSQFFLAPPGETKVQLLVSSFSEVASAYAEIEEAWT*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0010	cloud	direct	high	1394	0.999	GCA_003944315.1_01043
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	63237	66203	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	8983	11949	GCA_003944315_1_5_54	GCA_003944315_1_5_54	-	122744	.	UniProtKB:R2PRN9_9ENTE	tail-tape-measure-protein-	MATEIAQAYVQLIPSARGITGKIQAILNPEASAAGQSAGQSLGSSLVSVATKAIAAAGIGKAFSAAIHEGAALQQSLGGVETLFKGSADTVKRYAAEAYKTTGLSANAYMENVTGFSASLLQSLGGDTAKAADVANMAMVDMSDNANKMGTDMGRIQDAYQGFAKQNYTMLDNLKLGYGGTKSEMERLLADAEKLTGVKYDINNLSDVYNAIHAIQENLDITGTTAKEAASTFSGSFSAMKAAAQNVLGQLALGQNILPALHALFDTTKTFLFDNFIPMIGNVFSGLGLLLTEGISKIASELFGDAFGSAVYDQLSRVTGIFQTFFDMIFGSLNKQDNIDILKVLGFSDDAAKQIVNIADNIRVTFENIGATIGNIAGIVSSFIGELLGVRDGKQEVNLLGTAFEILTGFIKEVSSILKDVTKFFKDNQLAADLLKTSVVALGVGLPVAKIATFVQGLGGIPGILAIAKTAISGFATSAIAAISSIPLIGWIAAAIAALTWFFTQTETGRQIWAAFVDWIKVAWQGIAEFFSGLWSGIAEGANNLWSSVSEAWSSAVENVKNLWNGIVVFFDALWLTIQTAASIAWTQFTTTIMSIVQPFIDGFLNLWNGVSNGISQIFEGIKMIFQGAWEFIKSIFLGAILVIIDLVTGNFTQLGADLGLIWEGIKNGVSLVWEGIKAIFMGLVDAIVGFGKAAFENFSAALSAIWEFIKSAASAAWEWVKSTVTNLITGLVQGAQNIWNGFMNFLSSLWESIKSTAVNGWNALKSGVISIINGLIQGAQNAWNTLQQGVTNVVNSVTNIFKGLANINLWDAGRAILDGFLGGLKSAWGSVTDFVGGIAGWIRDHKGPIEYDRKLLIPAGNAIMGGLDKSLKEKFKEVKKTVSGMAGSIADSFGDEILAPDLGVLGNNEVQVALTSSKLLDQILDPDHNRDKESTLLETIVKLANRPVIVSQQVDTREVSQILAEPIAEEQEKRQTILKAVDGLGWT*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0011	cloud	direct	high	2966	1.0	GCA_003944315.1_01044
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	66203	66577	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	11949	12323	GCA_003944315_1_5_55	GCA_003944315_1_5_55	-	122744	.	pfam17318	Family of unknown function (DUF5361). This is a family of unknown function found in Bacteria.	MIDLDEDALICDLAETYGIYDYRQLPAQQVAVFAFGLKEDSRIKMALSNQKVPFETLLMASTLDRLSTLLWFKTKDGQKGANRPTMIAQKLIGEEKERDEMVFSSGEEFEAYRQRILAEVGGEK*	mmseqs_cdd	nonviral_gene	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0012	cloud	direct	high	374	0.997	GCA_003944315.1_01045
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	66592	66897	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	12338	12643	GCA_003944315_1_5_56	GCA_003944315_1_5_56	-	122744	.	.	hypothetical protein	MVKRKRNKRNHGAQGKTFKGKTSTGFAFEITQERLDNYELLEAVAEVDKNPAVLPTVINLMLGDKAQDLKDHVRTEAGMVPTGKLMQEVEEIFKSRTHLKK*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0013	cloud	direct	high	305	0.997	GCA_003944315.1_01046
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	66901	67452	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	12647	13198	GCA_003944315_1_5_57	GCA_003944315_1_5_57	-	122744	.	UniProtKB:F8S0S2_9CAUD	tail-protein-	MALEANVTTAKPKVGGAVHSAPLGAKLPVDATSKLDVAFKSLGFISEDGVTNNNSPESEDIKAWGGTIVNSSQTEKKDTFVYTLIEGLNIDVLKEVYGAENVSGDLATGITIKANSKELENHCLAIEMILKNGALKRIVIPSGKVTEIGEITYKDGEVVGYQTTITAFPDDTGNTHYKYIKGA*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0014	cloud	direct	high	551	0.998	GCA_003944315.1_01047
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	67466	67801	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	13212	13547	GCA_003944315_1_5_58	GCA_003944315_1_5_58	-	122744	.	PDB:2LFP_A	tail-completion-protein	MIEIIIKKYLDGHLDVPSFFEYEAEAPNSFVIIQKTGGKERNHSGSATFAFQSYGPTMQKAAELNVKVKQAVKGLIELDSISGVHLNSDYNFTDTETKRYRYQAVFDINYY*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0015	cloud	direct	high	335	0.997	GCA_003944315.1_01048
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	67802	68038	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	13548	13784	GCA_003944315_1_5_59	GCA_003944315_1_5_59	-	122744	.	Uniprot:A0A0C5ADH8_9CAUD	type-I-neck-protein	MASMKVKLNGAGVGALLKSREIQNLLNQEATKIRSRCGPGYEQDSYVGKTRANAMVYPKTYQAKKDNLLNNTLLKAVR*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0016	cloud	direct	high	236	0.996	GCA_003944315.1_01049
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	68031	68369	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	13777	14115	GCA_003944315_1_5_60	GCA_003944315_1_5_60	-	122744	.	PFAM:PF10665.8	Minor-capsid-protein	MGRIKGITVILIDKVKTGQDDFGHSVFEDREIEVENVLVQPTSTDDKVSQLNLTGKVAVYTLAIPKGDTHNWEDREVLFFGQRWRTFGIPTEGIESLIPLDWNKKVTVERYG*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0017	cloud	direct	high	338	0.997	GCA_003944315.1_01050
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	68356	68751	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	14102	14497	GCA_003944315_1_5_61	GCA_003944315_1_5_61	-	122744	.	PFAM:PF09355.9	head-to-tail-adaptor	MGDFATVEDLETLWRLLKSDERKRAEALLKIVSDSLRVEAKKIGKDLDVLVAEDSSFASVVKSVTVDVVARTLMTSTEQEPMTQFAESALGYSVSGSYLVPGGGLFIKDSELKRLGLKKQRFGVMEIYGTD*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0018	cloud	direct	high	395	0.997	GCA_003944315.1_01051
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	68757	68987	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	14503	14733	GCA_003944315_1_5_62	GCA_003944315_1_5_62	-	122744	.	PFAM:PF08198.10	Arc-like-repressor	MEYINKETLVTIETDCKLLGDWVPAAEFTKSQEGQADDSENWTVPELKSKLDELGVEYSDKAKKAELLALLEAHKE*	phrogs_hmm	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0019	cloud	direct	high	230	0.996	GCA_003944315.1_01052
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	68989	69879	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	14735	15625	GCA_003944315_1_5_63	GCA_003944315_1_5_63	-	122744	.	PDB:3JB5_B	Major-Capsid-protein	MPTLQTGDLFPVETVQDIFSKVKGHSTLAKLTTQEPIPFSGTETFVFNLEGNAEIVGEGSPSNAGSATMKPKVIKPVLVTYQARVSEEFVNCSEEKQLSYLKSFIDGLSKKVAQAIDIASFHGLEPKSMTDASFKSTNSFDGLITGNVVTYEADKIDENIDTAVATITANDCEVNGIALSPAAGAALGKIKVNGXVQYPEYRFGQNPGSFYGMKSDINKTLTTVASSAKKDHVIVGDFENAVKWGYAEEIPLEIIKYGDPDGAGRDLKRYREVCLRTQVYVGWGILDEQAFARVEA*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0020	cloud	direct	high	890	0.999	GCA_003944315.1_01053
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	69884	70348	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	15630	16094	GCA_003944315_1_5_64	GCA_003944315_1_5_64	-	122744	.	PDB:6B0X_d	Major-Capsid-protein	MRMSEFKPITTQEEFDAAIKARLSREKEKYADYDQLKSRVEELEKENVGLQSTIEASNKSKADADKQLEDLQNQIAGYETASLRTRVALQHGLPYDLADRLQGTDEESFKADAERLAGFMKKSQPTYPVGTNEPSSIDEKDAALKGMLHKMRGE*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0021	cloud	direct	moderate	459	0.987	GCA_003944315.1_01054
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	70423	71835	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	16169	17581	GCA_003944315_1_5_65	GCA_003944315_1_5_65	-	122744	.	PFAM:PF03354.14	Large-Terminase	MARKKLGNQNPTQSVILKYVKKNSKAKEAIELYERTGLSCYAWQKNLLLPMMAIDKNGLWVHQKFGYSIPRRNGKSEILYILEIWGLHKGLNILHTAHRISTSHSSFEKVKRYLEKMGYVDGEDFNSIRAKGQERIELYSTGGVVQFRTRTSNGGLGEGFDMLIIDEAQEYTTEQESALKYTVTDSANPITIMCGTPPTPVSSGTVFTKYRETCLFGKGKYSGWAEWSVSDEKEIDDVEAWYNSNPSMGYHLNERKIEAELGEDKLDHNIQRLGFWPTYNQKSAISETEWNELKVDDVPELSGKLSVGIKYGQDGTNVALSIAARTKDGRFFIETIDCQSVRNGNEWMVAFLRQADVAQIVIDGASGQKILDEELKDYRIKNVILPTVKEIIVANALWEQGIYQKTICHAGQPSLSKVATNCDKRNIGSNGGFGYRSHFDDMDISLMDSALLAHWACATTKPKKKQKISY*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0022	cloud	direct	high	1412	0.999	GCA_003944315.1_01055
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	71890	72120	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	17636	17866	GCA_003944315_1_5_66	GCA_003944315_1_5_66	-	122744	.	.	hypothetical protein	MGNTIDFSERKSSIERGASVKEILVENFEASPNYSSVLVISLDKNGEVNLGYSWESSLQALGMLEVAKNYILNDIN*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0023	cloud	direct	high	230	0.996	GCA_003944315.1_01056
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	72172	72363	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	17918	18109	GCA_003944315_1_5_67	GCA_003944315_1_5_67	-	122744	.	4A54_A	EDC3, MRNA DECAPPING COMPLEX SUBUNIT	MELRKFNNKVVRITDIDGQTFEGICLYEDKDVYDEEYDGLSVKSGTRWTKLFEDEIKEVEIIA*	hhsuite_tools	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0024	cloud	direct	high	191	0.995	GCA_003944315.1_01057
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	72363	73589	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	18109	19335	GCA_003944315_1_5_68	GCA_003944315_1_5_68	-	122744	.	PFAM:PF06152.10	minor-head-protein	MVKDIVPELLTKIQTEFEEARLDSEVLKSLLSKLESKSAGYLDANDYAIELGEILSKVLRSSVSPSNLPDGKMYYNIAKRLLTETLGRNFELISGYAQQVQKNLNEEAKIGLRVQVPELNQDRITGLVNRISSEAEFSQIAWILKEPIVNFSQSIIDDSIQKNAEFQKKVGLAPVIERHSTGHCCDWCQSLVGKYLYGEEPLGFYRRHQRCQCTIDYHPKNGKQQNSWSKKWSKESADVLERRKQQNIDVRDNNRKVDIREYKKIVEILGPQNAPISLAQFQELKYNDSERYERLRDVVYIQEKFKNGTWLDKINPEKQARHIQSTSLTGKSYFYDHVDVNALYDKYKMTGFLETSRKGAQTSNEKVDLFEDRPLGIDVYTGKPVNAMTIKYSKTGAHLIPTYYERGD*	phrogs_hmm	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0025	cloud	direct	high	1226	0.999	GCA_003944315.1_01058
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	73537	74850	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	19283	20596	GCA_003944315_1_5_69	GCA_003944315_1_5_69	-	122744	.	PDB:2JES_G	Portal-Protein	MEIRGIDYLRRKLASCRSRVNLRYKHYAMQYQEVPIGITIPPNVRAQYRATLGWTAKGVDSLADRLVFREFGDDVFNVTKIFDRNNPDIFFDSAILAALIGSCCFIYISKGEDDEVRLQVIEASNATGVIDPITGLLVEGYAVLARDDYGQATLEAYFEPNATHFIPKDGRPYSISNPTNIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILGLDPDAEPLEKWQATVSSLLTISASDNGEKPNVGQFSTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGFLNVAYVATCLRDDFQYARSQFVRTKVKWEPLFEADANMLTMIGDGAIKLNQAVPGYVDGETIRDLTGIKGAENPVPAPIEKEVNDGQGYRAGVVDENSDGI*	hallmark_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0026	cloud	direct	high	1313	0.999	GCA_003944315.1_01059
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	75083	75421	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	20829	21167	GCA_003944315_1_5_70	GCA_003944315_1_5_70	-	122744	.	COG1403	5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms]. 	MNLPRPDRNGPHRVAFEKNKNIILKTRNTCGICGLAVDKSLKYPHPLSPVIDHIIPINRNGHPSDINNLQLAHWQCNRQKSDKLYADSRAESLKVVGNRNLPQSRDWTKYRA*	mmseqs_cdd	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0027	cloud	direct	high	338	0.997	GCA_003944315.1_01060
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	75643	76209	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	21389	21955	GCA_003944315_1_5_71	GCA_003944315_1_5_71	-	122744	.	CDD:cd01192	site-specific-tyrosine-recombinase	MKKVEPIRELDDIERMKDFLKSKSERNYVLIMCGLYSGMRISDIIPLQVKHVMSDRIEVTEKKTGKVKRFAINPELRKALNHYIKTNELQDYDYLFPSKKKVRTDGVRIAHIGRVAAYQILKQAAEHIGLKNIGTHSMRKSFGYHHYRRNQNVAILMELFNHSSPDITLDYIGIKQDELDDSMMNFSY*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0028	cloud	direct	high	566	0.998	GCA_003944315.1_01061
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	76322	76747	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	22068	22493	GCA_003944315_1_5_72	GCA_003944315_1_5_72	-	122744	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MPFFPEINEAKTKENAKKILKGYPRWRRVANDKNGQKVTTTYSFMPRNPGSDTTSQVEKLAIRKVDAELELDAIEQAVSELHDPYYRRIIYEKYLVWHRKKDETIYNELAISESSYYEILDKALLAFAELYRNGEQVEIME*	mmseqs_cdd	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0029	cloud	direct	high	425	0.998	GCA_003944315.1_01062
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	76779	76973	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	22525	22719	GCA_003944315_1_5_73	GCA_003944315_1_5_73	-	122744	.	.	hypothetical protein	MNKRIKKKAKQALLREQEKLNQELAKLSPEELARAVKQVFKSMARTLASIFEGLAAFFKGFDKP*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0030	cloud	direct	high	194	0.995	GCA_003944315.1_01063
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	76945	77091	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	22691	22837	GCA_003944315_1_5_74	GCA_003944315_1_5_74	-	122744	.	.	hypothetical protein	MNGYEFMAQHPYLTSFIAIMIAITVISTVESIAKIWRKPDEQKNQEES*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0031	cloud	direct	high	146	0.993	GCA_003944315.1_01064
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	77088	77279	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	22834	23025	GCA_003944315_1_5_75	GCA_003944315_1_5_75	-	122744	.	.	hypothetical protein	MRIMIDGEFQAFLTFMFHFIMIDWIWKFLEINIAGKENGNLPDSILLVLLCLYITWILNRRTK*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0032	cloud	direct	high	191	0.995	GCA_003944315.1_01065
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	77394	77780	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	23140	23526	GCA_003944315_1_5_76	GCA_003944315_1_5_76	-	122744	.	.	hypothetical protein	MTKLIGFGRCLGKTTMAILESHATGSRILVANQKMVENTFRMAKELGYTIPYPICVNDLVRTPHAYSSEEHFIIDNVEMVLQEMLYNKIDTITFDNRTIDPEDRYREEIRTLKQEVDACYKEKRKTRK*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0033	cloud	direct	high	386	0.997	GCA_003944315.1_01066
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	77793	77984	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	23539	23730	GCA_003944315_1_5_77	GCA_003944315_1_5_77	-	122744	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MKEKTYEDNQQGQRVYVTEVVADSFQLLESRNKSANHSSMDEQMPPDFGNNNPMDISDDDLPF*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0034	persistent	direct	high	191	0.995	GCA_003944315.1_01067
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	77995	78426	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	23741	24172	GCA_003944315_1_5_78	GCA_003944315_1_5_78	-	122744	.	.	hypothetical protein	MTKTIEIPDWCSMWGRKDERYGSLEELKELLLYKRIVKWDKDFLLLEDGTKVTIEMSESDCCASAGGEFKNVTLDAVITDVKIGEPTKFDNGDGTTCENTVTIYHNQNPIASAECEADDGNGGYYYSVGSLVIGKIHFPVVEA*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0035	cloud	direct	high	431	0.998	GCA_003944315.1_01068
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	78472	78750	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	24218	24496	GCA_003944315_1_5_79	GCA_003944315_1_5_79	-	122744	.	.	hypothetical protein	MKKLGIILGTVFVIVVSPFVVQYGWNEIITTIVPVGKITVWQALGMDALLSFIWPVLSSKKESEEDYSYAVKSSISKIIVCAFLIWLASLFI*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0036	cloud	direct	high	278	0.996	GCA_003944315.1_01069
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	78747	79055	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	24493	24801	GCA_003944315_1_5_80	GCA_003944315_1_5_80	-	122744	.	pfam07116	Protein of unknown function (DUF1372). This family consists of several Streptococcus bacteriophage sequences and related proteins from Streptococcus species. Members of this family are typically around 100 residues in length and their function is unknown.	MREHSIYIFSIVVLLAILMAAIIKINRINERVEQLEARKLITIHRADNAGAEMHGRITDKEVIDGRYTVTAGPYGKFLVTKEQYDNLQVGDEIPDYLRGTGR*	mmseqs_cdd	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0037	cloud	direct	high	308	0.997	GCA_003944315.1_01070
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	79052	79543	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	24798	25289	GCA_003944315_1_5_81	GCA_003944315_1_5_81	-	122744	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MNSITLEEKVEQWFVERNLHEANPVKQFEKLMEEAGELFEGIAKGKNELIYDALGDIQVVLIGLEQQIRNGAEIEATAQELELLLMVSSLGNLAQKLYKHVFHKETKQPLIKPDLMLLHSAIHALALYNETSADDCLALAYQTIKHRKGKMIDGVFVKEEDLT*	phrogs_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0038	cloud	direct	high	491	0.998	GCA_003944315.1_01071
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	79536	80333	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	25282	26079	GCA_003944315_1_5_82	GCA_003944315_1_5_82	-	122744	.	PDB:4U7P_B	Adenine-specific-DNA-methyltransferase	MIIREMVVWALFDSGNGSYFKGAKVLNRSGGANIDIYPIGKDVENKNNHFINLDLADYGRLFGDNTLFGELDKLPKPDLIIASPPCESWSNASAMENGNACWKRNDVSDCLFAPQVRPSPFTIRGNQDYESAYINYQYDRQFLKRINGELTAFNTIEIIRKYRPQFWVIENPAADRLWPYIEDIIGFKIPYKNLARYNNYDYPLQKRTIFGSNIELNLKNKIIKQDIEWKNFSKSYNERSNIPKKLVIEIFEKVYKEFSKEKKDE*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0039	cloud	direct	high	797	0.999	GCA_003944315.1_01072
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	80330	81148	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	26076	26894	GCA_003944315_1_5_83	GCA_003944315_1_5_83	-	122744	.	PDB:4M4W_K	Replicative-helicase	MDFKNFEARQVLDETCEVHGCQLWLTKMPIKGKLEEIKQCPECTKAAISLFEKRLIETSEVQSKLADTYAVFERDSIISDKLRDKTLRNYEITSDIDQEAVNFVKRLEHSYAKGETGNAIITGPSGVGKSHLTYGLAAYLNEQFKSYDEPKSVLFVSVVRLFSLIKESFKVDNGYSESKMIKLLTDVDFLFLDDLGKESRKADARSNEWAHRVLYEILDNRSNTIINTNLTSEEIKALYADDFGNGALSSRIFEGATGRCFVYPSGMKDRRY*	rep_hall_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0040	cloud	direct	high	818	0.999	GCA_003944315.1_01073
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	81148	81894	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	26894	27640	GCA_003944315_1_5_84	GCA_003944315_1_5_84	-	122744	.	PFAM:PF09681.9	phage-replisome-organiser	MAQRRMFSRKITETDRFLEMPLSSQALYFHLNMGADDEGFIDKAKTIQRTIGASDDDMKLLIAKGFLIPFDSGVVVIRHWRIHNYIQSDRFQSTLYQSEKAQLEYDKSKTASLKPIGNCIQNVSETETQVRLSKGSLDEDSLTTYPTVSDNEEEDIPYKEIISYLNEKANRNYRPNIQKNKTLIKARWSEGFRLDDFKHVIDTTVKDWSGTKYEKYLRPETLFGSKFEGYLNQAPRTKKEIIDERLGF*	rep_hall_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0041	cloud	direct	high	746	0.999	GCA_003944315.1_01074
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	81895	83223	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	27641	28969	GCA_003944315_1_5_85	GCA_003944315_1_5_85	-	122744	.	PDB:3BGW_F	DNAB-Like-Replicative-Helicase	MDDLKILPHDIQAEQSVLGSIFINPDKMIEVIELLKPDDFYRPAHKILFKAMLGLFDSGEAIDIVTVKSELEASNELDLVGNVSYLAEIINAVPTSSNAEHYAKIVAKKSRLRSIITNLSDSIGNAYDEDMDIDEIIAKAEKSLLEVSQSSNKGSFRPIHDVLLENHSKIEERSNNTSEITGIESGFSDFDKLTTGLHEDNLIILAARPAMGKTAFALNIAQNVATKANQPVAIFSLEMGAESLVERMLSAEGAIPNHHIRTGSLSTDEWERLVYAQSRLAEAPIFIDDSAGIRISDIRARARRLAQETSGLSLIVIDYLQLITGRKTDNRQQEVSEISKQLKIIAKELKVPVIALSQLSRSVEQRQDKRPIMSDLRDSGSIEQDADIVAFLYRDAYYQDKTDDQPESNLTELLIKKNRHGGLGTVKLYFHKEYTKFSSVEE*	rep_hall_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0042	cloud	direct	high	1328	0.999	GCA_003944315.1_01075
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	83223	83450	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	28969	29196	GCA_003944315_1_5_86	GCA_003944315_1_5_86	-	122744	.	.	hypothetical protein	MNNLQIIAVGTLFSVTLIESILMNIRLKKALKRKLTTSEISPQRSYQKGFVDPKTGRRVDIDPMTRKETFVDRGR*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0043	cloud	direct	high	227	0.996	GCA_003944315.1_01076
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	83529	83786	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	29275	29532	GCA_003944315_1_5_87	GCA_003944315_1_5_87	-	122744	.	PFAM:PF09035.9	Excisionase	MDNVLVSLSDWIKSIIKDTITRLVEIEKDSDHYPELMDVGTTCDFLGIKYDTFSDNYRYLKGFPKELPGKKWSKRAIKEWLSNQI*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0044	cloud	direct	high	257	0.996	GCA_003944315.1_01077
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	83801	84514	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	29547	30260	GCA_003944315_1_5_88	GCA_003944315_1_5_88	-	122744	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNEIFNFHGQEVRTLTIDDEPWFVGKDVADILGYAKPLDAISRHVDEDDSVKYGLTDNLGRTQNTIIINESGLYSLILSSKMPQAKEFKRWVTSEVLPAIRKQGGFIREDLDEDAFIALFTGQKKLREQQATMLEDIDYLKSEQPIHPSYAQSLLKKRKARVVACLGGIDSPAYADKIFAQSVFRQAEIDFKDHFNISRYDLLPKKFAEAALAYWMTWEPSTNTKMKIMKLNSFDEV*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0045	cloud	direct	high	713	0.999	GCA_003944315.1_01078
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	84532	84735	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	30278	30481	GCA_003944315_1_5_89	GCA_003944315_1_5_89	-	122744	.	PFAM:PF10078.8	transcriptional-repressor	MSKELKKIKAKIKTRLIELDMTQTELAKQVPVASSVISELLRYGKGSDTVKEKVSEVLGIENPWAKI*	phrogs_hmm	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0046	cloud	direct	high	203	0.995	GCA_003944315.1_01079
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	84788	85318	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	30534	31064	GCA_003944315_1_5_90	GCA_003944315_1_5_90	+	122744	.	.	hypothetical protein	MLSDIINIISIIASTSVSIISIYYSHKAVKIASEANKLTAEVTEEANRPVIVAYLDTIEINDFHKYLVIKNFGNTSATILDLKFSKDIDTLGFNMSSLVGYTIAPSQKFMHILDNSFKETIVVNIIYQNSAGKTYDEVCLVKTDATSKLLWVGSSDTDKTRKLLKNSAEAIIKSLK*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0047	cloud	direct	high	530	0.998	GCA_003944315.1_01080
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	85319	85480	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	31065	31226	GCA_003944315_1_5_91	GCA_003944315_1_5_91	-	122744	.	.	hypothetical protein	MEMEKEYLTEEDAAKIKKELLKVLRSHDLNSGLAKAVLTDTIETIENYSQLPE*	.	hypothetical_protein	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0048	cloud	direct	high	161	0.994	GCA_003944315.1_01081
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	85769	86119	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	31515	31865	GCA_003944315_1_5_92	GCA_003944315_1_5_92	+	122744	.	PDB:1PRA_A	Repressor-protein	MFFTFEKIKELADKQGISLNKLEENLGFSRNTIYNMKKSTPNIERVSKIADYFNVSTDYLLGRTDNPIIAGEKASKIEIDLKKDAAESFFYDGHELNDEDIDLISSILEARMRNRK*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0049	cloud	direct	high	350	0.997	GCA_003944315.1_01082
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	86129	86512	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	31875	32258	GCA_003944315_1_5_93	GCA_003944315_1_5_93	+	122744	.	PDB:3DTE_A	IrrE-protein	MTTPEQVCSEQGIDLVYFDGRDSQNKGIYNQHHNIIAVDSYLDDIEKKKVIYHEIGHKEHDPGQYQRRREEYELQADRNMIHYLLKEELETMDDTANFNYIHFMEKYNLKSITNEIMVKEEYLALLN*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0050	cloud	direct	high	383	0.997	GCA_003944315.1_01083
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	86528	87439	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	32274	33185	GCA_003944315_1_5_94	GCA_003944315_1_5_94	+	122744	.	pfam08797	HIRAN domain. The HIRAN domain (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. The HIRAN domain is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this domain functions as a DNA-binding domain that probably recognizes features associated with damaged DNA or stalled replication forks	MKIGMRSPSLKKSLKARTTSKWKRQTKKALIPGYGQKGIGWLKNPKKAMYNKIYHKTTFGLSDLLKPSKKRKKKVVTKNQQSILTSNGKKYTAKDHKEAGIVLMVLGAIFLFLFPPIGFFLFITGFISYIIGRLTIKREKKKKIENYSPQIDTIVFHDNFLLMGTNYHKEEAEIAADFLSKGVHYFGKDNKSLKSYMLETYKPVYKYNKLKTVDVQLLPEPSNPHDKNAVKVLVNNIFVGYLPAVIASQISSYIANPNYRYDAILTGRGGPYKTLNIETERVVSYEKELTYYLDLTIWRLAKK*	mmseqs_cdd	nonviral_gene	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0051	cloud	direct	high	911	0.999	GCA_003944315.1_01084
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	87614	88762	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	33360	34508	GCA_003944315_1_5_95	GCA_003944315_1_5_95	+	122744	.	PDB:1XO0_A	Recombinase	MKYIKTKYPNIYYYETAKGKRYYVRRSFFFRGKKREKSKSGFTTLPQARAALVELEQQIQDQELGINTNITLDQYWDIYSEKRLSTGRWNDTSYYLNDNLYKNHVKPKFGSTLLKNLDRNEYELFIAEKLKNHTRYTVQTLNSSFMALLNDAVKNGNLLSNRLKGVFIGQSDIPAANKKVTLKEFKTWIAKAEEIMPKQFYALTYLTIFGLRRGEVFGLRPMDISQNDSGRAILHLRDSRSNQTLKGKGGLKTRESERYVCLDDIGTELVYYLIDEAAKIKRKLGIIKDQQKDYITINEKGGLINPNQLNRNFNLVNEATGLHVTPHMMRHFFTTQSIIAGVPLEQLSQALGHTKVYMTDRYNQVEDELAEATTDLFLNHIR*	common_virus_hmm	common_virus	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0052	cloud	direct	high	1148	0.999	GCA_003944315.1_01085
GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote	cenote	CDS	89193	89708	GCA_003944315.1	RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315.1_RJPQ01000005.1	GCA_003944315.1|RJPQ01000005.1	GCA_003944315_1_5	GCA_003944315_1_5@C6	34939	35454	GCA_003944315_1_5_96	GCA_003944315_1_5_96	-	122744	.	cd01043	DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	MTQVKHGAAADVATFTNQNSLPKTKAVLNQVVSDLYTARIALHQVHWYMRGAGFMVWHPKMDEYMDTIDETLDEVSERLITLGGKPYSTLTEFIQHSKIEEKAGEFSKNVEESLERVIEIFRYLTDLYQEALDVTDEEGDDVTNDIFVGAKADLEKTIWMLTAELGQAPGL*	mmseqs_cdd	nonviral_gene	C6	35454	54255	89709	GCA_003944315.1|RJPQ01000005.1@region_54256_89709@tool_cenote_CDS_0053	persistent	direct	high	515	0.998	GCA_003944315.1_01087