core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	1	272	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	1	273	GCA_003985315_1_2_1	GCA_003985315_1_2_1	-	692324	.	COG3864	Predicted metal-dependent peptidase [General function prediction only]. 	MNLQKLEKELSRVKIMLMGKPSAVFLAYAILHIPTVFSNKVATAATNGLRIEINPKFFQNLNQEERQFLLAHEVLHILLSHMTRLGTRDQK	mmseqs_cdd	nonviral_gene	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	282	1289	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	283	1290	GCA_003985315_1_2_2	GCA_003985315_1_2_2	-	692324	.	COG0714	MoxR-like ATPase [General function prediction only]. 	MNITLKQAEKLMYPLLNNKIVPFLHSSPALGKSSLAKTVAAKAKLKVIDLRLTELDASDLNGLPYFNEGKAQYLPFNTFPIQDTEVPDGYNGWLLLLDELNSALPSVQSAAYKLILDRQVGQYKLHDDVYIIACGNLDTDNAITYPLSSALVSRFAHFYIEPNTKEWTDWALDNDIDIRIISFLGFMPSHLYKFNPDSTEPYASPRTWEMLSKALSELETIDTTHLPLLASLIGDGIAQEFMQYLKLADKVPKLEDIINNPEKVAVPSELGLQWATTSMVISSIDNSNYAKLEIYLRRFNMEMQVVALRYIVKQYPNLVTKTSEWRKALASEIFI*	mmseqs_cdd	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0002	shell	direct	high	1007	0.999	GCA_003985315.1_01187
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	1325	1609	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	1326	1610	GCA_003985315_1_2_3	GCA_003985315_1_2_3	-	692324	.	.	hypothetical protein	MTCTLIHKYELLYKLEYTPIHPRYELDTEFDSIDGKLTFSISTDDTHDVAVRLIFKFDIDADNMLHIYTTGLNESLLNEFLTYLAICGIYYKLQ*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0003	shell	direct	high	284	0.996	GCA_003985315.1_01188
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	1625	2005	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	1626	2006	GCA_003985315_1_2_4	GCA_003985315_1_2_4	-	692324	.	.	hypothetical protein	MGLDTYLYAIAEDKDNRDEEGRRRFEKDLETIAYWRKCYPLCDYFLSMKSDLLDEDGNYEYIPITQGELSEFLDISLDDYFNNSVLGVDEEDEYSKMYDGDIETLRQAIDHMKQLPNHNFYLLNLW*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0004	shell	direct	high	380	0.997	GCA_003985315.1_01189
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	2015	2248	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	2016	2249	GCA_003985315_1_2_5	GCA_003985315_1_2_5	-	692324	.	.	hypothetical protein	MKLNTHDINWIVNEYQAGRTTQEIATDTGMSRQNVKRALAEAGLLTLSWYKTKEENKMLIALASKGISNVTQLLERL*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0005	shell	direct	high	233	0.996	GCA_003985315.1_01190
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	2676	3884	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	2677	3885	GCA_003985315_1_2_6	GCA_003985315_1_2_6	-	692324	.	PDB:1MSW_D	DNA-directed-RNA-polymerase	MKVFNPMQYLAIDIANHFGLDKLNYEERIDWVKTNINSLENMTEQAEEPILFAKAVYALRQTQQGIPTGHTVAFDATCSGLQLMSLLTNCKSGMSLTGLIDPNKRSDAYTQITEYINYLLKQDGIDSVEVSRKDAKQAIMTSLYGSKAKPKELFGKQLLPYFYKAMDECCTGAMDLLSWLLNSWQDIQVQSWVLPDGHTAYIPTMQQVTKRVSINELNYTPVVTYYENIASEKGIANAANVVHSVDALVLRELVRRCNYHKGELKTFLRLHANAEQTKQVDDTLWINERFKATGFASISFIEAIEYNNITKVSNELREALANICEHILSHPKFEVITIHDSFACSPIHMQRLREHYNNILVELYESHTLDDLLSQVYQTEITVNVGEKTLSETIRNSNYGIN*	common_virus_hmm	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0006	shell	direct	high	1208	0.999	GCA_003985315.1_01191
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	3871	4155	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	3872	4156	GCA_003985315_1_2_7	GCA_003985315_1_2_7	-	692324	.	.	hypothetical protein	MLNNQIRYLSILVENLTEEEKSLLCSRALVPLQPNSKTIRSFYYSRQGNIIYSFDSAIYEKNGEAYVCSSYQEFNELINLWKLDRLLGINHESI*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0007	shell	direct	high	284	0.996	GCA_003985315.1_01192
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	4145	4405	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	4146	4406	GCA_003985315_1_2_8	GCA_003985315_1_2_8	-	692324	.	.	hypothetical protein	MRLHRDPISIATNTLTKEEKEILAELLQIDIPNNTKAIVYYFNLDSAQCFSLEVFTRLYDLIDSLDEFIDMVIENRMNLVVGLYAE*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0008	shell	direct	high	260	0.996	GCA_003985315.1_01193
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	4407	4667	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	4408	4668	GCA_003985315_1_2_9	GCA_003985315_1_2_9	-	692324	.	.	hypothetical protein	MSNYYYYAIVTDKLSKKDYQHINNSFTIYVNQPNPTYFIYGLETKRAYLVSYSFSLDDDLTIKFFPNLKALIEGIYTYRLDKLIGI*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0009	shell	direct	high	260	0.996	GCA_003985315.1_01194
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	4660	4923	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	4661	4924	GCA_003985315_1_2_10	GCA_003985315_1_2_10	-	692324	.	.	hypothetical protein	MNDKLYSVIKSTDLNQEHLEILKSDKKISPYVQNDDYIIYCKTRDYFFLFNLTPSVRILSDIYTDSNQFMERVAQYQLNRTLGLTDE*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0010	shell	direct	high	263	0.996	GCA_003985315.1_01195
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	4916	5182	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	4917	5183	GCA_003985315_1_2_11	GCA_003985315_1_2_11	-	692324	.	.	hypothetical protein	MEQNFRYIWLSLNDITDSEIDHLIELIGFYENNSKYIVYYPSMDFFLWQKEVPDLSKDKRDLVTNSFTEFMAIVNEYVLNQILGIDYE*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0011	shell	direct	high	266	0.996	GCA_003985315.1_01196
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	5293	5553	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	5294	5554	GCA_003985315_1_2_12	GCA_003985315_1_2_12	-	692324	.	.	hypothetical protein	MTIIKATLYSYYEKESITFYFYTRKSKIKVSKLVDEISKHLPISADFSKEQYYSKTIKLEELFYANLENDEGQFLLTFDLINPTTI*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0012	shell	direct	high	260	0.996	GCA_003985315.1_01197
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	5568	5843	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	5569	5844	GCA_003985315_1_2_13	GCA_003985315_1_2_13	-	692324	.	PFAM:PF14216.5	ribonucleotide-reductase-NrdA-like	MKTKVVNKYKEPYDVYIGRGSKWGNPYPITANQDRKTVIQAYKKYLLNSPELLKDLHELKGKTLGCFCKPKPCHGDVLIELINQLDKPKSD*	phrogs_hmm	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0013	shell	direct	high	275	0.996	GCA_003985315.1_01198
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	5862	6044	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	5863	6045	GCA_003985315_1_2_14	GCA_003985315_1_2_14	-	692324	.	.	hypothetical protein	MIYTFDRYKNVSVNASIIMLASSENESYSVGCLINDETIEQALNRLGIDFDTRYPDYIIQ*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0014	shell	direct	high	182	0.995	GCA_003985315.1_01199
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	6041	6958	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	6042	6959	GCA_003985315_1_2_15	GCA_003985315_1_2_15	-	692324	.	PDB:1MSW_D	DNA-directed-RNA-polymerase	MNQRQLEILMHPKHIRRDVSEIIIKSFSKQIEQSVKAIHKWTEVSEYESKNARKQVLSTLDIHKLVVDIFTTITMVTQKPLPYISVASQIAIDNMSKLDSIKTACELIALLQHTKLYVINKNYDTRLIESLVVLPKDAEITKRIRLSCFLPPMIEPPKPVNNNRQSGYLTINDHIVLGYKENQHNQRLSLDVINTLNQNKYVLDNYVMQNFEKPWFKEVLEECELSLLDTIDQQKYYDQTVTFEKYKEQLKVLTEIIKDKPIYFNHRYDKRGRIYTVGYHFNTQGTSYEKACINLCKQELITGEL*	common_virus_hmm	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0015	shell	direct	high	917	0.999	GCA_003985315.1_01200
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	7025	7150	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	7026	7151	GCA_003985315_1_2_16	GCA_003985315_1_2_16	-	692324	.	.	hypothetical protein	MKAYLIFVTLGFSTTVWADNAVEACKQVSQQGYSVTSCHPL*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0016	shell	direct	high	125	0.992	GCA_003985315.1_01201
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	7219	7458	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	7220	7459	GCA_003985315_1_2_17	GCA_003985315_1_2_17	-	692324	.	.	hypothetical protein	MTEFTTRTNATPADREPADHYVNVYFQDRQIGYLVLDKFVQLVEFLQKDEQNATKLIKNCTATYRERGKSTVSFDLSSL*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0017	shell	direct	high	239	0.996	GCA_003985315.1_01202
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	8005	8274	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	8006	8275	GCA_003985315_1_2_18	GCA_003985315_1_2_18	-	692324	.	.	hypothetical protein	MQAVQVQLHNLVVECSSGMYLLVRDGHIDIADAVESLLESAKLYLAYPPRFIESEYYYSVVPLSTIHQIHLESDCGDFTISFNPIEILD*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0018	shell	direct	high	269	0.996	GCA_003985315.1_01203
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	8375	8635	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	8376	8636	GCA_003985315_1_2_19	GCA_003985315_1_2_19	-	692324	.	.	hypothetical protein	MEQQVRKEKVQRTWLGNVFHAISKAFSTAGTLATATDKAAKNYGALAVTQSSRAVKKLDADIRKEYGVSLAEFNKEVEDMVDDLYD*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0019	shell	direct	high	260	0.996	GCA_003985315.1_01204
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	8911	9291	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	8912	9292	GCA_003985315_1_2_20	GCA_003985315_1_2_20	+	692324	.	.	hypothetical protein	MFNKLFMFTAGLALAISSHADVYLGSYQGYEYYLLPSKTKQVTGTKYEVQMERFVAQDKKVDGLAQGSYTLYRRYIECSNKTVATISWANYNKHNRLLDSKKMSHLKYYDIFPRSWGSALYDEICR*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0020	shell	direct	high	380	0.997	GCA_003985315.1_01205
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	9291	10397	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	9292	10398	GCA_003985315_1_2_21	GCA_003985315_1_2_21	+	692324	.	PF18741.1	REase_MTES_1575	MYDRFNNWQQWKYYYHEQLKHPAGFEEMFVDRVLSQVTGLTPSDVIPQYHFVDDVGGNRYIDFMVLNEAKGYHLAIELDGLTKIQSGYNTLDYVRYQDMWVRQNALMRTGAVLLRFTNKDMFQRVNWVIQSVVDTLASQNKQYTTQQGLIQGYQTRIQALKNQATVTQQMKDTVAMLQEQVTQLQVKQSNESTKELNTQEWVMKPIPSVSEIQDEYAREEQKRLAAINNANATVTTKQGSSYRWIWVILAVVITIFGYLALRDDYVTAEEYIPPAPTATTHEPYTAYVPVENEVLPIIQEPVSEYKAKQEHIQTLTPAQPEHKIDVVDIPTHDRSGRIENIERMDKESYSERGTLTQILDETRADREY*	hhsuite_tools	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0021	shell	direct	high	1106	0.999	GCA_003985315.1_01206
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	10397	10858	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	10398	10859	GCA_003985315_1_2_22	GCA_003985315_1_2_22	+	692324	.	.	hypothetical protein	MANKNKASVLTEISHVISGAAESMNKSVQDWADKSKQKRLERTFSDINEAIRFLIDGKSVAEVENSFKNHAYLDNKVQYNYLKAGRWMDGYPVYVDKKQWVKFGYDYNGRHWGIEITDSLMIFVRDANDCKENYHSYADQVRQLDEMVDSFYN*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0022	shell	direct	high	461	0.998	GCA_003985315.1_01207
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	11016	11702	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	11017	11703	GCA_003985315_1_2_23	GCA_003985315_1_2_23	+	692324	.	.	hypothetical protein	MTLTVDVLKKSLPSKYKRNVNDDLLEHINTILDHPELYDDYRNNFLTYISVIQDGKYKLDDYLNAIKYCTHKLMGESNMDSFVKTFPNRYQSMIAKGYTAKEMSAHVAMYNKNKLVNTILEQSMIPTWVLNQDLYQKAINVQADLMLNAMSEKVRSDAANSLLVHLKPPEVKKVELDVGIKQNDEIEALRNITAELAAQQKRMIEAGVITAKQNAETKLITKVYEHET*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0023	shell	direct	high	686	0.999	GCA_003985315.1_01208
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	11692	11799	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	11693	11800	GCA_003985315_1_2_24	GCA_003985315_1_2_24	+	692324	.	.	hypothetical protein	MRHKPPMYELEVTVLVLMIIIFLVWVILGAVNHGS*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0024	shell	ambiguous	low	12	0.111	GCA_003985315.1_01208
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	11789	13378	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	11790	13379	GCA_003985315_1_2_25	GCA_003985315_1_2_25	+	692324	.	PDB:4BIL_D	Large-Terminase	MGHKQPKTVNEWLQEVDYSDLENYVPSKFAIEYVNFIKLVNGEEGEENKTPIIHYKMADSLVSGDRQIANMIFRGAAKSTFLGEYFFLYLAVFGELPNFGVVDLAIYVTDSIDNGVKSMRKNLEYRWANSEFLQKYIPEIKFTDIRWEFKNINGKTLIVKAYGGKSGIRGVKEKGKRPQIAVMDDLVSDDDARSPTVLGAIKDTVHKAIEYALHPTKYKKIWLGTPFNANDPLYEVVESGAWKVNVYPVCEKFPCSRDEFRGAWEDRFTYDFVNEKYQTALALGKVDSFYQELMLQIMSDDDKLILDTDMQWYISNHLMDKKDNFNFYITTDFATSEKQSADFSFISVWAVNHKGYYFWVDGICARQTMDKNLDDLFRLVSQYSPLSVGVEVSGQQAGFIPWIQREMFSRNIFFTLASNSKDGSVGLKPNTSKLERFNVIVPDFKLKRFFFPTDKRHTPALKELLLELSQASVGGFRSKHDDGIDTVSQLAMMTIWTPSQEANYQKNTQGIWEDVLPIETHSNLSSYIV*	hallmark_hmm	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0025	shell	direct	high	1589	0.999	GCA_003985315.1_01209
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	13389	14141	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	13390	14142	GCA_003985315_1_2_26	GCA_003985315_1_2_26	+	692324	.	PFAM:PF07030.11	head-to-tail-adaptor	MIVREYLDYLANTELKNLNLIDIDTGKIPTNKLSRLMHLLQAGLRELSTRFDLQSENIPYHTKTAGIHSLDLKQAQKHHITSDVLMINHVLCVYAQTDDVLSANDLSHQTLECLSEKAFQEKALKLNLQDTLYQANETIPFYCLVSPTKLQLYSPYDVAHYLINAHVVLGVNDALQLTDKLPVPTAYYNALGLYIASVAFRSVNNQLGGDVNESMRYYQAYQQEIMMLEQQGIKRDNQPQTHLFHTKGFI*	hallmark_hmm	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0026	shell	direct	high	752	0.999	GCA_003985315.1_01210
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	14138	16558	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	14139	16559	GCA_003985315_1_2_27	GCA_003985315_1_2_27	+	692324	.	PDB:5GAI_G	Portal-protein	MINPEQLQEQLLQDPQANQALPDELMAMMGAMTTPTQESKALQFKQAYSMPDDDFKAYGYSKLVKDGMTKTKKQKLTNWLNEPSVQDLKHDYQHAQSAQSKFISDLEKWQQLYQAPRFGDKNHKGSRITPKLIRKQSEWTAPSLSEPFLSTNNLFDVKPLTFEDVDRAKQNALILNRQFNTQLNKVSLVDSVVRQVVKNGSCVLRMGWVYQEKQITEKVPLFNYVPVPLEQQEQANQQLAQLEQLAQTEPDSYEALADEVKAGYEMSVEKGIPYTAEPAGFTEKQAKRVIVNKPTVDICNLKNVFIDPTCKGNFENAQFVVHAYESSLSELKKQGIYQNLGYLMEQQSQADNSIDKPSDDVFKFQDNARRKLTVYEYWGYWDIHDNGETTAIVCAWVGDTIIRMEENPFPKGKLPFVVFNYLPEEESIWGIPNAELLGDNQEILGAVTRGMIDLLGKSANSQTAFPKNFLDSANKVKYSTGQDYEYNQGFDPRVHVHTHTFPEIPNSAMMMVHSMNNEAESLSGVKAFSSQGISASHLGDSATAARGVLDAVSKREMSILRRISEGFIQMGRFIMAMNSEFLSEKEIVRITNKEFVTIRRDDLAGEFDLTLTISTAEANENKSQQLAFLLQTVGNTLGTGLTQLMLSEIAHLRNMPDLAKAIENYQEQPDEMAQQLQQLQMQKLQAEIELMKSQAEENLAKAQVQTVKVGTEQARAESLQGDADNKALDFVERDSGIKQEHDLNKQAMINQGQNEKEMIKQQGLLDSQANQHDYNVLSQLQQHDLNQQAMANEAQMQSILPPNAQQ*	hallmark_hmm	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0027	shell	direct	high	2420	1.0	GCA_003985315.1_01211
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	16570	16881	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	16571	16882	GCA_003985315_1_2_28	GCA_003985315_1_2_28	+	692324	.	.	hypothetical protein	MIDIDTLEQEKIALKRKIQLFRALSNLEHNKDFVTLFKMYYFNEYVLDSVAKLSTDKDNQASLYLGLEMVSQLQAELQNIKTQGAMAEQQLQELSAIPLDEYL*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0028	shell	direct	high	311	0.997	GCA_003985315.1_01212
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	16883	17992	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	16884	17993	GCA_003985315_1_2_29	GCA_003985315_1_2_29	+	692324	.	.	hypothetical protein	MSEIDYSTLSDEELAKLDLSNVEVNWDNNPINTTQDEIQTAVEETDDNSNETVNEAVTQADKPSSNLDTQNTKATDTDDETVQTESDSDTNTDDKPAEQTDYQAFYEKLTKPFKANGREIQVQNADDMIALMQQGANYSKKMAQLKPNLALMRTLEQHGLNDADKITYLIDLYNKQPEAIAKLVKEADIDLYSFDTDQAEQYTPKTVVNEPSALEDTITELYGNHETFKDVVTDITTLWDKESKAIVSDNPEILRVMAKQADEGIYQQIMSAIDYEKMLGRLSGIPFLHAYEQVEARILQANQPVAKQEQGFTAPRPQANQEQVNSQNQAQKQRASVPKSSTSQSNAGFDPLKLSDEEFLKFYNQQKFH*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0029	shell	direct	high	1109	0.999	GCA_003985315.1_01213
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	18011	19174	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	18012	19175	GCA_003985315_1_2_30	GCA_003985315_1_2_30	+	692324	.	PFAM:PF13252.5	Major-Capsid-Protein	MTVIYNNGTNPTSVGATQLNPHVFERKALLDSLEEAYFSQLADSRTMPKTSGTMIKQYRYFPVIDDRNSNEMGLDAKGAKYANGNLYGSSNDAGLIADKFPVLGELGGRKNRIGMTRKEIQSNLQKFGVFYEYSNDAVNFDSDAKLLEHLERETTNACMTVYEDKLQLDLLTNAGLVKYAGTATQNSELSHGMELKYADLVKLGIDLDKNRCPKQTKIITGTRLTDTRTIPDCRIAYVGSELIPTLEAMVDYHNKPAFIPAHQYAAGTTLLKGEVGRIAGFRIIVVPRMMKWAGVGAEATDAAYYKTNNKYDVFPFLVVGDEAFTTIGFQSGGGNGKFTTIHKKAGEATASSADPYGETGFTSKKWWYGFMPQYVERIALLKVVAKM*	hallmark_hmm	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0030	shell	direct	high	1163	0.999	GCA_003985315.1_01214
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	19252	19770	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	19253	19771	GCA_003985315_1_2_31	GCA_003985315_1_2_31	+	692324	.	.	hypothetical protein	MTTENQTNKSQLEQLKEQADDLGLTYPSKVTIKNLKQMIAQELLKETDADNSEQIQAVEDENLKLVHVIVTSMNSQKASIGFETFQVGNSVIGSIKRVVPLGKPWLVENIILKAIKDKQFQQFIERDDPNNRNNKIVESKLVPAFAVQELPLPTPKEIEELAKRQETREVID*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0031	shell	direct	high	518	0.998	GCA_003985315.1_01215
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	19797	22145	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	19798	22146	GCA_003985315_1_2_32	GCA_003985315_1_2_32	+	692324	.	.	hypothetical protein	MTVNIPNSQALPDFNINELTHGTLDGTGVFDVLMDAVKVHLHEEFKAERIRATDYANAYIRGMEVALQTSSQYAISKAKLGAELQLMAKEIQKVDATIKTSQYQDLLIQAQTKQVTQETDNIKAKLPKEVLILDSQKAMLDAQRLGQLEQNKLTTAQASNITTKLPKELLLLDAQTLQTNKQTDQLTQKLPKELLLLTAQEAQIKGQTAQVTSQTAQIVAQTNAITAKTPKEIQVLDSQIGQTNAQTSAIISKLPKEITLLTSQDLQVKEQTKQIAQHILVEQAQQELTGANVALVSAQASAVSGKLNKELALMEKDIILKDKQVPQLEADTALKAAQISLMNEELKVKQAQVQIAQGELEIKRAQLPLTQAQTAQVQEEVKAITQRIKTEVEQTKLIQANANQANAQTAQIQAQTSSITTKLPKEVEMLTAQKDMVNTQRLGQVEQTKLTQAQTAQVTGQLGLINAQTTTESKQSALVEANKLMVDAQRNTLNSKTSKELLALDAQTGLTNAQTNQVTKQVDQLVKRLPKELLILDEQVKLTTAQVSQANAQTGQINSRLPKELLALDAQVAQTKAQTSAITANVNPDLELKASQKQLTLNQAQHEVAKSALTTKQTSVLDAQVALNRAQVDLQQAQKELTRYELQNIKPQELQLAQQKVNVAREEVKVKAKEVERIPAEIAQITAQKELYSQKVITEKAQTDGQYIKANSVMDKNNKVLTAQAKSFDNDSKLKMANIMADVWKVHHTNAADQAVPNDVNKLNASNIGRVIETAITGVTSA*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0032	shell	direct	high	2348	1.0	GCA_003985315.1_01216
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	22225	24891	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	22226	24892	GCA_003985315_1_2_33	GCA_003985315_1_2_33	+	692324	.	.	hypothetical protein	MSLFKKKKTFTNTDSASLYAPSQVSDAKQVKKQAIKQWVFEGSQRPLHEYLLASSQNGLKSRWDKLYELVQTKNIYSEYRWDFGEYSAIGKPLKQLNWKKAAEEYLKEKFPNQIDKFLHIDHGDLWELPSVDAWARKRFRFRQVNKTDHNHEVLIQSNPRYVVVLVGNDYNLQSWYLGSSSYVNKPNYHYLHPKNRLSRAHNYSRAYRTKLETNPREIRELASYPRVKPLSRESYTFVKFLKEDYDKIMREEVASKDTMPIAELIGIDAKSLLPNISTNYVPTPYPDDERDTKPYEWFGAEYIDKQGNVQTYYEHIPDLRNHRIGALASKHTTTIPIIQYHPIPIRISDYDMDKDSELLTGNSLLGKLFLNRQRRTEQLKQSHERIAYDRAYAAEALAVLGYDIKELISSFRDSMGADWGKLDDVWIHLSVPLPYDKSDFDVPVLHKYWHLYNYMMFKFRIATYFNPDYQAYYRQFTYMYSLPTEYGGIDDTVFWRQQGNPFTFQSHRFKVMTYNREHIDDFRSNFIRHNSPVNEYELENSTERMAQRINTSNGSTFDIPNELLDIRINHQTNGSYTRPDNYWSVPYNLYPYNRIPKTTRTPIGKNSTLMASTLYGSRVVGFTTLAYHNLPVIPYLLKQLTRHEQDELLQYAMQLHTRTEETVKVYRDWVKPAVKFGAVIVGIAVAIITGGGDGGSTYAALVALAKSLAVSLAINFVVKIAVKLGLVSPKLAGYLQLIITVVMAAHGASWDFSKLITAPNIMTAVNQSFNAYNKQKAYELAEVYKQIQDETVKYQTKTEALKTKQKMLDLGVAKDAKLYLNMPSYAPKVNLFETPQMMYARHSNINVVNLSLGTVSNLADGLLSKQQTPNLTTVADIQQQVEDVLLIT*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0033	shell	direct	high	2666	1.0	GCA_003985315.1_01217
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	24915	25469	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	24916	25470	GCA_003985315_1_2_34	GCA_003985315_1_2_34	+	692324	.	.	hypothetical protein	MNEIVANPFYVPTVGSYLTNNTPTDTSTITPTTVPTMTLPADTVVTQPNANYNGLGLPSQQQQWRNAVGSVGSLIQSSLSNNTRGFRNSWGQMSTGEKFNTGLKAVGSILEAINARKAHKLAKQTLAHDMMNNNRNYEMQAKAWNNTLEERQRYRQAYWEANNKGTGIARPESIGEYLNRYGAK*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0034	shell	direct	high	554	0.998	GCA_003985315.1_01218
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	25469	27367	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	25470	27368	GCA_003985315_1_2_35	GCA_003985315_1_2_35	+	692324	.	.	hypothetical protein	MSNFDTVFSTAPKWTNVEAIDATDVINSAYKNAELQNKAFKQLTEAGADVFKYAQQHKLNEVEKEINAMNLDQFQTTDKAALIDDLITKYGTDIGGFDAANINSINKYVDGRNTTLIKDAVDAIDYDSKSRKNTTEVMQYDADNTADVIHNLTKTTSLLPDGHPDKDKIYQQIESLTEKFMTKHPSGSTFLNRSLQSIVDADKKAKIESVRLDNAHVDEVVKLYGSAYISYLTQISALKAEEAKANKLEDSEAKKQALADIAFDKAALISHYGSEMIESLKNPLILARLEQNAYNDFHAKRMNEAEYEAAISAIENAKKELDIKWAKVNNDYKLGKQENAIKLFKATNEDKGSGRSSSEVKDATKNNVNRLTSIGLTEEQALGFIGENGEFNPNKVLASTLAYANKLHTQHNNSHIQGSKVSSSEWFTKEAPNLAKNAGVSDTRLRDYFDLARKHGKTDAERIKIVEAGIAGRLDIAYQGNGWGIIDMFGVARNDSLDNMEYTLLNKKVLDNIRTEIANEAFYRAANDFSLYLQAINTAYPTGLEGFVKDNAVALDQNKAFKKYADANTIKLLDEALEAFPQQKQQSKSSDKEKNQSKTPTSTAPKTPVGWERSVENGKESLDKALRYFNIR*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0035	shell	direct	high	1898	0.999	GCA_003985315.1_01219
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	27444	27716	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	27445	27717	GCA_003985315_1_2_36	GCA_003985315_1_2_36	-	692324	.	.	hypothetical protein	MNKKPEKITIKIKKEDLGDLDEITIEVQQKESAVDKILNQSIEGAQSLHHKAKINGWYRKIKILVITVLVIYLSIFAIIFIEPLLWRLGY*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0036	shell	direct	high	272	0.996	GCA_003985315.1_01220
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	27823	28116	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	27824	28117	GCA_003985315_1_2_37	GCA_003985315_1_2_37	-	692324	.	.	hypothetical protein	MAIKREKALTTPVIDAVNAELQTNQQRAELEKVRMLWFRVAVIVALAIVITFALLAIRLVCAYIRLTQSLTVVPALEYYWHMPLMFLLACTTLVILA*	.	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0037	shell	direct	high	293	0.997	GCA_003985315.1_01221
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	28107	28583	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	28108	28584	GCA_003985315_1_2_38	GCA_003985315_1_2_38	-	692324	.	PDB:3DTE_A	IrrE-protein	MTYAVNMARNILSTYWDRQLPIKPEDIAEALGVTVILDSDMEDTTSGSYSLDGDQPVIRVNANQHSNRQRFTLAHELGHHVLLHGEREDSPVTLFRQEGTTSNLEIEANAFAAELLMPKGVIDYVVENATKPTIQYMAEQFWVSEQAMIYRLRNTGWL*	common_virus_hmm	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0038	shell	direct	high	476	0.998	GCA_003985315.1_01222
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	28711	29037	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	28712	29038	GCA_003985315_1_2_39	GCA_003985315_1_2_39	-	692324	.	PFAM:PF03374.13	transcriptional-regulator	MNIAKIDALISNFSDAIAMLSELKDELTEPKPVILQEPSASTTEVYLRTEVLYPWVKLKRWCTQNHVQPVKKDHYGLMINHYPASAWLEVFGVDIIEIMSLKLIDEAV*	phrogs_hmm	hypothetical_protein	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0039	shell	direct	high	326	0.997	GCA_003985315.1_01223
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	29171	43612	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	29172	43613	GCA_003985315_1_2_40	GCA_003985315_1_2_40	+	692324	.	PDB:3Q23_A	Virion-RNA-polymerase	MSTDLDKVLQKLQAAQSRNIAQVEQAQKRMGIETHSERQKRLADEEAARLASENSFYKQVATNNTITPEIAPVYSPKVTARHNGGNILTDTGWGAASGVNSLIQGGLAVADTMLTQHVVNPVNNAYSMFTGDSKPLIPMPESEQKIAGRVVNAGIYQAALKKLGIYDAKAIEEYIAKKYSNEYSRQKAEVDEAVKDIENPLLKFAATFGHSLTKPNLLAAGAGSSLPQALPAGAIGRGAKVANAALSASTRAGIGTAVTSAVVEMGDTAKDKGYSTHRDMAYDLATGAGLGLVSKGLPSSFSTEQIIANGGVSRILANSANRARTTAVNTATETGQEAVQGALESALNQQQKEGKIDWGKVGKDAGMEAAVGFGMAGGPAIVGNIKAAVGDVKGFRSTLKTDPNNKNYDPNYAYQVSAGKAALGEIDIDSAKAEQTQALTTAMSRLTEFDEKLAQLPDGKKKEKLQKKRNDWFNNQVQPLQDTVAALEQVSNLQLSQEMSSDEVLQRILDLNAEAYHNRKQQAEQQLTDAVNYQPEIPEYTNVDGVGTSTTSTQQASTGVIAIGDSIANAFGNQYKKAGVTSYSKDGRNPNEVLNTITKLSKSELQGKTVVLSTGLSNNTKADLNTIRKQIKYLKDNGASVQVMGVANNFKDDSKLGTRMNTDLANIAKEMGVTFLGGFDYAKADKYKAHPDSGWYKPIYDKVGITQAQGQAVTGTSQYSTNFSIDNSNKSRDDLIMGTYTAFRKAGFTDGQARYLIGEVNRENGFSAKTMFGSHSDHANGANNFGFISWQQGRRTNLFKFLKDRGIDVKESGIPQTQASLDAMAAFFMQEMKSGGITLSQYRGGTYDTRNFLKQANPDLKDRRWGHAAIGWAYGQNKLKSGASFDSSTHEAKLDKGHADINRLLGSNYTGSFSSQSSNSNLNVDDNRTAQERLESLITKLKDEKTKTKEAEAQKALQDKISSLEAQVADNQTNSQQEQVSVESEAVSKAQQDTFDEVIRYSEMLSDDMINILVEQGALSEKHAEKLRLLKEVRVVENATKNADDVKHDIYIGKKAKRAEDGYIGLQSYQQGLVQYLKTDDIGVLDSYYNHLSRFNESHTSKAIAAKQAMDSFDEIQQPLYIARKADSQEWEVHEGSISKELRAKTGAIEISNISRNFVNNLIEEAAHLNQIKQGYDKAYELHGASDRIKESVKVSDIGLTDFSQINTGVSQQQQQQPVSIKTPTEQTAVQVTRASNINQTPVADVTTSDPTIEPTTTPTQESIPVTPPVTKTPSSVPTQRKPLRLPTNPYNDTLARDSSVGEYQRKIQEGVATPNYVWLGRGERQVNDEGKMATVSLSSIYRGTGSAKDPKTGQVTVRSNVFTDENKEVIKAGIFGSPIQSPIYVNSTNAHDQQKLKLIEEFGGDMYSIVHDGTQAGKDAAMIESANRYMDFMRVAVSNNQDFSRALLQMAANPNTGFVVQHKMSNSAFSEAAIVPRVVEELRKHPALQKISYKEQPQAVFNVLSNMGTLMADGQFHSEIQRPIDTNTFGKEDNLYKPHVFSKDDLNKFNEYTATNSTSNTSTGLNSGNAGNNTPPNITDNNGITETGIDENTNTDFDLSVFESHQNNTTEATKTLPTDVSTNTKENSTQEAESSADESVTPQETVAVKRNSSIPTNRASNAITKETVLKPMQVRKLESTSKAKEENKAEDTVYITNTPIEKSFINKPVKVSDLASSIESSQIKTKDKSQAENQALISVLSKYSPDIKVKIQDKTSYDEKASYDDDIIRVSEDSKDITRDIAQAMVHKQIGNIADELDTLDHVTALANIEAKKQRDANRKEGKQNTDTLFDDEVIDRQAKLGELRLTIDSINKDVRKHMRKILSDPNQKFTENSKALLMRATDSAADLLQLGLFNEDVKSVLKQVKVSRGKNKITKAYHALMDAVTNFFGFSKDESTAYTKLLGIVSDSTSLSVLDSEGNFSKSSEAKIRQLNEPAKNIEEDLTKPITATKDSKVVRNILKTSFRQAQTLHKPLSSIQNFVRELYTNPVKASQILNLEPPTKAQREQINDFAEFTAEFREHLKQVFKPTDEGYENRALANYFYDKQTGEFDSNVLDALSYGAYDYLNSVANHTMNMRDDILALLGLTSKDVEQKNNAHITKEMWETYKYIGSGYVKVADDLGKRIAETLNIQRTENGSITVDSRLYSALGTWALSAMQSADLIHLHSISSEKHKKAIEEVRGVIDEKDFNSHGTVRFVSITNKEGEGINKRINEISEANKGTAGYLTDIMGGVSAVRMPSLKPIEESIANVKRRIKRTDATVTDLQAQRVAKAQAHANVINEPTFSLLTNLASQHEDAFLEMIGAKLKEGELQTAHINDRDGLEGKAEAVMRDWTNAVDFINSIPKVDGVRKYWDTMFMAVNSRMHYNSNVFNYQSSKLHRAMAEPSNFKVTVQLKNKDGSSVLDSLQSKLKEYGKEIHSKHLTKDELNLTYFLRALAENMEGSEDFIEAYFESTGSKEIFTEGFTVDKLPSYVFIPAFIEYLNQEHIQKATEIVSKAQAGDKISSTEMNHLSSVIDEMAMTGSSLRALREWADFQTAQENNHTNFTTSLGLGSDGLNNGAALAHFWNGAFYKELLLRTGFFSFNDPFKSYFDARHDKNLGDYYTAFKNAVINEKAQEAFIMGFHANLEKDLANHNEQVFRALMKVQKSLTKRAVAKSVLIPFNYGAGISSLKKAVFRTFLKEMQDNITLAAQQDIANKKALEAGQMTQLEYDTQRAKLLNQVMTVDRLFSFMTQKPIQWDITIDNEPKAVVINENLDLKYMLEAWISPKDEAMLDNKYSFTMGQYLAEVLQDYEAVYIEKNKVNMRILSSTVELFTQMYHEVEERAIQTVAERISNALVETGLDRGLANELALKEISYRGLSDKEREELVHSVMDKVQAQIHNVYSVQNNESKAKVRLTRLAEILFVDKANLTNNSFFLVNKSGKYQATSFGSPARHIHLEDKALLANSVQTQSMDSYISSFAMAMGKKININVHDANIGAIDNQLDMITQQNRATFQALVSYHGQLESLRALTSVIQSSYALIKDGVIRKDFHDNEVFAELTQELSSLVDEVRDTELNKLDQLANLAYLHQYAGEFGEYQVTDADRQTALKEKNKVVDQINQLEKDLALNTTIKVMSYEPNKRTDTTKQQTSESGIVQLSDTRATEQVSQLPTTSTGTDGTQGAAFINSSSTPTEPTIQNLKQLDQTIKGLVNVSEVQLKLNKMLMGKANQHLSKMSVKFADVTTPNGTRAYGSYNVTTHTLTLDNLTFSQSGNDENKLRVINHELVHALTEYAIISNAQDLRSELNHLNKMLDAVMAQWQEDVAFNKKYGQSRHDTKEDDLTYVNQIMEVIKASQEADTTNGNHYAGLSEFIAYGMTDPEMMRYIDYAMELADLGIKPRKGISSVMDFLVRLASKVLGFKGDGYKAFVQNVETIMDNPPVDLLTLTSNDTRFSASAMKSVQANIKRGTEAMNKAITTKADVKRAMYRNDIGWIDFVWGSTGILKANGKTKGAMGISHIIEARMRKDGMSYDEVVEMLVTTTVETIAKGSVFARFEQGGATKLQLVLDNHLVNLVKNKGSNAWVITAFEMFEDGTGKGYGKTSPTHNQSYSARTDVGASNETNITQVTTDSNEDTRYSQIFDETDKQSASEVFNSLDSQTLTDGWNKHLQEVWDSLFDGNIAYSTLSEMEQKSLLDTAKQVNKVFVPHTFNMAVKEQLSYQAVTSIVDFLVNNHTDSNITSELNKIHAQLIKAYPTAADLYPDYHTANDEVKNLYDTEHSKLFKSVGEMNNLASVVALVLSSQTFNELTDQKVELRKTKHDSWFDKFMNLWHKAMNLLRTKYINANSTSEATKQLMAKLVNAETNARLARVSMIDKAWNTVYQKPMDAANWVWDKTWDIGSEAIISGLPMSSQMRDTWRSHKERIKAAKQLENLSKSSVAKDSMNLTIEAGLAITGLDMNMSYGGNQDIKSATRGFIKETVNEMLGQRGVGHTVERVIRIVNKVAQDRANYKQSMLNNFASIMKDPKRFDNHAKQSITRTVMMSDAQTLLHYHGMEQTLNYIANSKQRKVRIKELEDKLQSLSKNREHFNQLLKDTKDLAWYMVGETVSGDVKKNAELIATSAGTRSITPYEQMDQNIFEAVDELVTLHGLEMVNGKYMYTTQDLIQNEGQVLIAMLNTHHDLVKKSKEEFKDNPLNYIKGFKPAIHNPHVDVVAVKAEEVDDYIQKGYEQVLHGSIVQDELDNTEPRYLMINKNAPYARYNSGGLDMKDTHFRGYEVFNYKTNAKELARVGQGRLKRNTELAKTMDARSYDPRNIKGNHLIPRYGNDMLILGYNYEMSGELRDKLLDRDLSFDMMLATMGSELVAKPKLVDTQRTLAQVLAEDAKNPITGFKISPVHFTVINPNSPDPRVQEMLRMMPYEFYQEMQHQFGKGKPFVIRTAVFNSVFGFRKYNVSEMFDKVSGERNYFEKFMVTLYENIYGKQARNKAANHQYVWEWFVTQAKDLIVIRSVKVLIGNIIANALISAAHGITPTELARGMFYAWKEGKAYRQLQAEEQRINFEMLNATSESQRKKLKAQLVAVRQNMQNSGMHEYMEEGLMSTIVEDIDMGSETKLFKSDFEKKLDNLAEKIPQPVRTTMKWATFHPDTEIHKFLSESTQFSDFAAKFVLAKHIERKSLKMGKSKKAAFKDGIQMAQEVFINYDIPTNRTLQAANDLGLFMFTKFTVRFQRALARQLHQNGGHAMLQHFMVEEYLPVAGLLNPFFPMFNTGLGAFTGIGALAQLPLIAMFL*	common_virus_hmm	common_virus	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0040	shell	direct	high	14441	1.0	GCA_003985315.1_01224
GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote	cenote	CDS	44256	45113	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C0	44257	45114	GCA_003985315_1_2_41	GCA_003985315_1_2_41	-	692324	.	cd01572	Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.	MKTPLFALPDALLIPTVQAALLEDLGRRGDVTSAAVIAKNSTANLAIVSRDTGILAGMDLARLAFECIDKTINFSPNASDGDTIKSGQVLAYVSGNTQALLQAERTALNFLTHLSGIASMTAKAVAQISHTQAKITCTRKTTPLLRNLQKYAVRAGGGCNHRMGLDDAILIKDNHLIYSGTLKQTIANAKAAAGHLIPIEVEVDTIAQLEEALEAGADFVLLDNMDNDTLKHAVSLCQGRAKTEASGGITFERLKTVADCGVDYIALGYLTHSVINHDIGLDFLD*	mmseqs_cdd	nonviral_gene	C0	45114	0	45114	GCA_003985315.1|RYES01000002.1@region_1_45114@tool_cenote_CDS_0041	persistent	direct	high	857	0.999	GCA_003985315.1_01225
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	183523	185637	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	1	2115	GCA_003985315_1_2_170	GCA_003985315_1_2_170	+	692324	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MRLPETTRAERQTNQLARRIQEKAQLTGVNVSGTQISSQAFEMVTDFEPSGDQPKAIAELVKGVEVDMRGQLLLGVTGSGKTYTMAKVIAECGRPAIIMAHNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPASDTFIEKDSAINDHIDQMRLSATRALLERRDAIIVASVSAIYGLGDPESYLKMLLHIVVGDRVHRDAVIKRLVELQYERNELDFGRGTYRIRGETLDIYPAESESLAVRIQMFDDEIEKITWFDPLTGKNIKSVPRITIYPKSHYVTPKDKLEAASATIKEELAQRLEYFRANDKFIEAQRIKERTQYDLEMIGQLGYCNGIENYSRHLSGRPAGEAPPTLFDYIPSDALLFIDESHVTVPQIGAMYKGDKSRKETLVQYGFRLPSAMDNRPMKFEEWEKISPATIFVSATPAQYELEKSEQVVEQVVRPTGLVDPILEIRPVLTQVDDILGEINLKKSLDERVLITTLTKRMAEDLTSYLKEYGIKVAYLHSDIDTVERMKIIHELRTGIFDVLVGINLLREGLDMPEVSLVAIFDADKEGFLRSERSLIQTIGRAARHVNGKAILYADTITPSMQKAIDETERRRAKQIAFNQEHGITPKSASRAITDKIDTGDDETSEVVQIVLSQALAGVDENILHSPKLLAKEIARLEKQMQALSRELKFEEAAKVRDTVIALKELLVQ*	common_virus_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0001	persistent	direct	high	2114	1.0	GCA_003985315.1_01353
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	185678	186319	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	2156	2797	GCA_003985315_1_2_171	GCA_003985315_1_2_171	+	692324	.	cd10032	Uracil DNA glycosylase family 6, includes hypoxanthine-DNA glycosylase and similar proteins. Uracil DNA glycosylase family 6 hypoxanthine-DNA glycosylase (HDG) lacks any detectable UDG activity; it excises hypoxanthine, a deamination product of adenine, from double-stranded DNA. Uracil-DNA glycosylase (UDGs) initiates repair of uracils in DNA. Uracil in DNA can arise as a result of misincorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	MPLLFNDQVKANFMFNQLMTIQTIHRHPLPPFTPPNACVMMLGSFPPPPERWAMPFYYPNYNNDMWRILGLVFFDDAKRFIDSTHKTFDQDAIEQFLTKTGIAIGDTAEQVIRQKDNASDQFLQIVTPADIEKTLKQLPRCHAFITTGKKATEVLCQQFTSQKIPNIGEQVQLLIANRRIDLYRLPSSSRAYPLAIDKKADFYRKVFETLGLL*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0002	persistent	direct	moderate	602	0.938	GCA_003985315.1_01354
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	186383	190330	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	2861	6808	GCA_003985315_1_2_172	GCA_003985315_1_2_172	+	692324	.	PDB:1UAA_B	Replicase	MTDTILTMPPTPPKPSEQIAALQCTLEQAYLIEASAGTGKTWTLTGIILRLLIEKKYPPERIIATTFTRAAAAEMQERISERLHSFYGLMRWLQGMLSTQPEWFNQAAPIEQIITYANQAGYDAADPINEHLLKFILSQKATFLNEVVYRTGLLLTSLDKLFVGTLDSLAQKWLNEFAAQIGHQSGMEILNNAEQKVAAIVHDEMRAEEVRLKHAQPEFYQIFKAFYPNFFSQVDAVVKIVNKAINFYSAPIDELMPINTDISLVKAMIDQIITTDFTGFTPYFDANFRKQVAMNQSLGFGKLIQYLPNLLSLIQKHGVLFVRFVDNDALKLIDAIIKAMDKDWQIFNKSANPSDINQFLALPLQALSDIANVYLTLSEQTNLYHTHICRHIILSAKSQIAQRLETHGQTTFTLQMVRLNEALRNSPALARQIRHHYPVALIDESQDINGLQVELIELVYLNEIANYHKNLIRYEQIGGEKPKLPRGFLLLVGDPKQAIYRFRGGDVTNYNLIKHYGNQDLLIKAPLMNQSLSLTVNRRSSKALIEALNAWFDNNHQDAVANHANLGQGIFYQQIQAHKDGGGIHWQSDAYADYYGKYPIAVLHFDHIEAGQKAAQRAEQIARHINTILQGDHTLHGQKILPKDIAVLGRTADTLDRIKSELDQLNIPAIIPKEMNIFITQAADDLLALIGAILQPNHSENLGKFLVSSLVGMTLKQAINIIEPNDQQALDNDLSETQNLKTHLLAYLKKSYEKWQKFGVSSALAYALHHSPIDYDDDKSPWLKAATQGERYLVDLERLVALVSEQSQLHEMRIIAWYHKQMNADVDSHNKRPILPSESGVNLMTIHKSKGLEFPIVYVIGMDEKPKNENGLTIYPYTNHNFQRCLSLSQGNLIDENYYYHINQQELIDEIRRLGYVALTRASEQLYIVGGDLSKKTSKEMPLYQWLDCAGEKILSLPDRLKGWVDWIDLTEADLFSQPYQTKLPNLSAKHYAPWDMVMTKTQFFGEYKTSFSALITRLDKSAISPDEADIDQLSVLTDMAASDQFDDIRTSFFKGSLAGDFLHKVMQFLPTDRLALASLHDAHRIISGVIYEQGRKLGIAERYLPTRPAQQIGTRINSNEHQADDHTKLVAWIYQLAYAPFRASHRSLMSLPMTVQLRELSFTLGLGDTFSITRLNEVFKAHSDKDLVLLDDDYHTMRYRYLRGEIDLVYECDRRFFIVDYKSNYLGSTPDEYHDHAMAAVMDKVGYWLQAAIYQVALHRLLKIRLKDYVGNEAAYLGAVEYVFLRGVQEGNEKTGHLCWQPPLSLILALDEIL*	common_virus_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0003	persistent	direct	high	3947	1.0	GCA_003985315.1_01355
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	190364	192421	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	6842	8899	GCA_003985315_1_2_173	GCA_003985315_1_2_173	+	692324	.	PDB:3UPU_B	ATP-dependent-DNA-helicase	MAGDIISRYVTDRVQDNHQWYAKKQVLAAECTLRLPDFELYHIVQDALLFQLNQGHTILHINDHDDLNNRHGLNGMIPIWQQKIMDSCLTVITHALANEGMDWAAFFDAYHRCADDTIKIKQFVNHALNHFRQQVSLLDHTVMEIEQLSALFLSMLRIYYVLYKNANTLNQFVSLLHNNTFFGDILASNIQSIPTNTPPIYFSDQAGGLYLWTSRAYLAESQLMTHILRISQADVPIFALDQLPNSLNTEQRDAIKLVSKQAFCLITGGPGTGKTFTVAQIVIALNQRDEYKKMRLGLAAPTGKAAQRMSESLLKSLDKANDIQLPKPKTIHRLLGIGANGSPRYDAKNQLPLDMLIIDEASMLGTELASQLFAAIATGCRVILLGDTHQLAAVDAGAVLADLCRIERLRHLRVNLTASKRFTDTSGVGQLAKLINDDRQNIHFDEIQQLINCHTKIDFHPITHALMHNDTYQKLSQDYQDYFLASKRLRFSFAKLSSQDAIDSVKKLFKILDTYRILCASHLGTFGDDQINDYLSLAHRAVQKIPPSVSPWFHGRVVMITKNLYDLGLFNGDIGICLWGSSGLSVYFEGEALRMVAVDMLSDTVVSTAYAITVHKSQGSEWQKVAIIFDGNSERLLSKELIYTAVTRAKSAVHIYSTHDALINAINTPTVRQTGLDKVSDSQQS*	common_virus_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0004	persistent	direct	high	2057	1.0	GCA_003985315.1_01356
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	192541	193566	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	9019	10044	GCA_003985315_1_2_174	GCA_003985315_1_2_174	+	692324	.	COG0042	tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]. 	MMTDNKLQKSLKNQHILSQPLSIGGLKIENRIWVAPMAGVTDNPFRRLCKSFGAGHAVSEMIIADTALYARKKSLYRANFDGEIAPISAQIAGAEPDKLAQAAQFQVANGAQIVDINMGCPAKKVCRKLAGSALLQDEDLVRRLLDSAVLAVDVPVTLKTRLGFANGQENILKIAQIAEQAGVAAITIHGRTREDFYTGQARYELITQVKKAAKIPIIVNGDIDSPQKALDIQAKTGADAVMIGRAAQGKPWLFQQIAHFANTGELLASPTVGEIHEVVLRHLDELYRFYGEYSGCRIARKHIAWYTGGLPNSNAFRDAMYACETTKEQFEVVDKFFKTIS*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0005	persistent	direct	high	1022	0.996	GCA_003985315.1_01357
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	193574	195127	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	10052	11605	GCA_003985315_1_2_175	GCA_003985315_1_2_175	-	692324	.	COG1570	Exonuclease VII, large subunit [Replication, recombination and repair]. 	MPKNTTIKHVEALGSTLDDPETLLNKHRQIAESFEAKLAKEAVFDENFNNLADAHLSLSDYLTAVKMVIDDSFDHEVWVRAEIRAMNTKGGHYYFELAETDDADQITASCRATLWRFRAKTVMSKFTKMTGQSLQAGILVLVKCSASFHANYGFSLNISDIDPNYTLGEIAAAYTQMKKRLSEEGLLHLNKKHAIPFDIRHVIVIAPEKAAGLGDFRAEADRLALAGACQFHYHYATFQGNHAPNEIRLAISEGMNNFKNTYDNLPDLLVIIRGGGAVGDLAYLNDFELAALVAECPIPVWVGIGHERDSVILDEVAHSSFDTPSKAILGIESHLVKMTRQAVATMERLTKMTNTHLTMAQANSQRQIEKIQRSSLHAVNMAKKDNLYQLSHIKSTAKFRHHQEKSALTALLAQTQKSSLAIISQAKHTTKIHLDQHNILFDYLSKLKKDCRHLQSLILIQHPSRMLKKGYTLIHNAQTNESIHSTKTLQQNQSVKITFKDGTVSAVIKDISTHKNT*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0006	persistent	direct	high	1553	0.999	GCA_003985315.1_01358
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	195309	196415	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	11787	12893	GCA_003985315_1_2_176	GCA_003985315_1_2_176	-	692324	.	TIGR03707	polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds]	MTTTPKPKTATTSSTIATTVPKKTTSTRTKVSTATETKPKPSKAEAIMTQTVGQLEELLEHATPEELAEFGEALKEYLPTTHVISQVRTDKSRDTQLSDNWREGGYPYKYRLSRKNYEAQKYKLQIELLKLQHHIKTTGQKLVIIFEGRDAAGKGGTIKRFMEHLNPRGARVVALEKPTEQERGQWYFQRYVQHLPTAGEIVLFDRSWYNRAVVERVMGFCTDEEYRIFMHQVPEFEKHLVESGIHLVKFWFSVSREEQRVRFASRENDPLKQWKLSPVDKASLNKWDDYTLAKEAMFFNTDTAEVPWIVIKSDCKKRARLNAMRYVLNKLTYENKDIAQIGNIDPLIVGRAGALYEMDERTDLTVST*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0007	persistent	direct	high	1106	0.999	GCA_003985315.1_01359
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	197101	197208	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	13579	13686	GCA_003985315_1_2_177	GCA_003985315_1_2_177	+	692324	.	.	hypothetical protein	MTDKMREAYEAIKAEQALQRQSEALMCMFDRLEKA*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0008	.	unmatched_CDS	none	0	0	.
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	197238	197639	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	13716	14117	GCA_003985315_1_2_178	GCA_003985315_1_2_178	+	692324	.	.	hypothetical protein	MMRLVMFGIKLLHSDDFIKSASSFGCFLAIMDKQTNKNHVYNLSTQVQRFELIDIDQVANLANSVQNGAISATVGTLLVRAGVLPALVALSIGAGLPNRTKDAYVCHIEFDNGKSAILQLSKHKYQQFLKHIA*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0009	shell	direct	high	401	0.998	GCA_003985315.1_01361
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	197702	197920	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	14180	14398	GCA_003985315_1_2_179	GCA_003985315_1_2_179	+	692324	.	.	hypothetical protein	MALAINIVLGANTVHFSRNIQKATQNAKKYLQGFALLAYMQAADKDKSVQDFLIIDPNPMTDEQKKPLLSAL*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0010	shell	direct	high	218	0.995	GCA_003985315.1_01362
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	198053	198232	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	14531	14710	GCA_003985315_1_2_180	GCA_003985315_1_2_180	-	692324	.	.	hypothetical protein	MTAETFHLIPAITGAVSGAASVGLLNGPLQTFQDIWFVVYGHKWHYKIANCEYYQARAI*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0011	shell	direct	high	179	0.994	GCA_003985315.1_01363
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	198284	198934	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	14762	15412	GCA_003985315_1_2_181	GCA_003985315_1_2_181	-	692324	.	PDB:2FJR_A	Repressor-protein-CI	MPSERAKADQFPKMIRRYSKGQAKPRNDKMKLLTQCLGVPITWLDYGEGEMTKNNDKLTPITEWDNGAPLDDDEAEIPFYKDIAFACGHGAVNDDVTHETRKLRMGKRTLSNLGVMSENAFAVTARDDSMTPYVQDGDTIYIDKGRKEIKDGRIFAIRFGELCLCKRLYRLPDGGVRIVSDNAAEFPEQVATKQQVIDGEFEVIGWVWSVSRLERW*	common_virus_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0012	shell	direct	high	650	0.998	GCA_003985315.1_01364
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	199137	199505	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	15615	15983	GCA_003985315_1_2_182	GCA_003985315_1_2_182	+	692324	.	.	hypothetical protein	MNEFIIPNSNSVSNDFNYSRTDLDAQEQQIAEFIKKGDKVINLDNSEQPKKKSAKKRDFNNQRINSKMHLVLCYLKRSGKRMTGLQIQEKFGISATTLGSQTRLLNAQASKQYNQNSNPSRK*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0013	shell	direct	high	368	0.997	GCA_003985315.1_01365
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	199502	199852	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	15980	16330	GCA_003985315_1_2_183	GCA_003985315_1_2_183	+	692324	.	PFAM:PF05133.13	portal-protein	MKHQHSQASLCVANINEGFLSLLNWCNRYTGAKHPPKFVIRQQFSQHAVDIGLLTQLSGLIDADKLPKSVLYDKAREFNLISGELSNDEIDGLIEQPSITYEAFNQFRKVQGSSGK*	phrogs_hmm	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0014	cloud	direct	high	350	0.997	GCA_003985315.1_01366
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	199803	200045	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	16281	16523	GCA_003985315_1_2_184	GCA_003985315_1_2_184	+	692324	.	PFAM:PF06152.10	head-morphogenesis	MKHLINLERFKVHLANKFKTTLNEIDEFLQLVVFRHEISELNYKEFELLIGESKQKLLGFLVGYALELTQDWQELYNYST*	phrogs_hmm	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0015	shell	direct	high	242	0.996	GCA_003985315.1_01367
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	200042	200716	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	16520	17194	GCA_003985315_1_2_185	GCA_003985315_1_2_185	+	692324	.	PFAM:PF06152.10	minor-capsid-protein	MNEPQFDADSPIKLSAQVGVTLNQILAKFGDEQSTKISNAISYAYANGLPNQELVRIIRGTRKNRYQDGILQITTRHAKTIAHTGTAIVANQAKQQFIHDNKDIIKGIKVIATLDLRTSSICRGLDGVFMPLDKARYPPYHFNCRSSFEIVYDGYQTPKQRASMDGVVKNQSYYEWLKNQPKAYQVEVLGKKKAKLFQESSVDEFKEFDKNLRPMTLDEIKAQL*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0016	shell	direct	high	674	0.999	GCA_003985315.1_01368
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	200789	201523	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	17267	18001	GCA_003985315_1_2_186	GCA_003985315_1_2_186	+	692324	.	PFAM:PF06810.10	minor-structural-protein-	MQLKTDENGNVVVQDGKPVYMYDDGQEIAFDAMQNMAKISQLNAEAKQHREAKEKAETLLKAFDGLNADDAKKALETVKNLDDKRLIDAGEVEKVKAEAKKAFDEQLAEKDAQINKIKQEYNNAVIGGAFARSSFIKDKTLLPSDIVQSSFGSHFTMENGKIVANLGGNPIYSRKNPGELADFDEALETIISQYPHKDSILRGSGASGAGATQAGVGKNTPKSLADCKTDEERVAWLNEQNNGE*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0017	shell	direct	high	734	0.999	GCA_003985315.1_01369
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	201526	202479	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	18004	18957	GCA_003985315_1_2_187	GCA_003985315_1_2_187	+	692324	.	PDB:4AN5_F	Major-Capsid-protein	MAFDLVKFNQETHLVMTETIAQQVDKFNAQSNSTIQLIAKPFKGDFDVASSFKAIANLVRHRDVENGQNNISSARLTQHKNVAVKIAAGTPEILWEAAQYNWTMQNPQLAAIKIGEQLGRATIADMLNTAIKCGVSAIKGNTALVEGDGTTALDFASLTKGASRFGDRSQAIGAWVMHSGALTNLQLKALGNNERLFTYENVSVLRDPQGRLFIVTDCPDLVDESTKHNILGLTEGGLIVHNQNDFNSVIVPKTGTENITNAYQAEWSYGASVKGYTWDMTAGGANPNAGALATPTNWKKTASSDKDTAGVLVVAKA*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0018	shell	direct	high	953	0.999	GCA_003985315.1_01370
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	202489	202731	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	18967	19209	GCA_003985315_1_2_188	GCA_003985315_1_2_188	+	692324	.	PFAM:PF10281.8	Arc-like-repressor	MERILYFTDDFSQENQAYAKQHGLIIRNAKAYGAVDYLEQCDKVCGQVPIAYEHLPRFELDDNVSDDDTKPKRIRKPKEE*	phrogs_hmm	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0019	shell	direct	high	242	0.996	GCA_003985315.1_01371
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	202788	203138	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	19266	19616	GCA_003985315_1_2_189	GCA_003985315_1_2_189	+	692324	.	CDD:cd08053	Head-Tail-Connector-Protein	MLDDLPIDTPDKERVLMVVNAYLINKGVKFVGDVPEPIKQAGLELAHAFMNGELLAGRTEGVVTSKSSKAGDVSVSKTYADGADGQAMGQHEMIALALMQPYIKKSYGVNALVGRL*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0020	shell	direct	high	350	0.997	GCA_003985315.1_01372
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	203135	203485	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	19613	19963	GCA_003985315_1_2_190	GCA_003985315_1_2_190	+	692324	.	PFAM:PF12206.7	head-closure-Hc1	MRQEITADIANAFNTDLADAVKDFTAKRVILSDDDWAVNDTQVLSTINYSGRGVFTSFSAHEIDNQTIMQSDVKLICLQDELTEIPQIDDEINEMKIISISHDPAEVSFTIQLRGF*	phrogs_hmm	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0021	persistent	direct	high	350	0.997	GCA_003985315.1_01373
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	203485	203832	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	19963	20310	GCA_003985315_1_2_191	GCA_003985315_1_2_191	+	692324	.	PFAM:PF04883.11	tail-component	MGIKWNKKLSIDPIADEIDKTYRKFAINCYNNVKTLSPVDTGRYRNAHHISVGAPSYSETGGGVELILGIPKHTYPIIYIQNNLPYALRLEHGWSQQAPTGVYGNAFNSAIANLG*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0022	persistent	direct	high	347	0.997	GCA_003985315.1_01374
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	203829	204029	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	20307	20507	GCA_003985315_1_2_192	GCA_003985315_1_2_192	-	692324	.	PFAM:PF16777.4	transcriptional-regulator	MPKITSTPKTQTQIQKESNARRGVKNKAFTLKLDDIELIKSLSKRLNIPQNQLIMDAVRAYQRQLD*	phrogs_hmm	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0023	shell	direct	high	200	0.995	GCA_003985315.1_01375
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	204409	204795	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	20887	21273	GCA_003985315_1_2_193	GCA_003985315_1_2_193	+	692324	.	PDB:2L25_A	tail-completion-protein	MNSFHIEQTLLTHIKAWEYFDDVPLAKENRNFKPPDGIWGRVTILGGVNQVRSISNTPNILQQGTLVIQLFCPQDLGTVAIKQKADSLAQYLKAKQLGRLELLAPSIINVPSNDGIYQINVSVPYRYY*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0024	shell	direct	high	386	0.997	GCA_003985315.1_01376
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	204804	205322	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	21282	21800	GCA_003985315_1_2_194	GCA_003985315_1_2_194	+	692324	.	pfam11195	Protein of unknown function (DUF2829). This is a uncharacterized family of proteins found in bacteria and bacteriphages.	MKLITASVLTALLTSFVATRTVQATPLNRQEYNDLRGWQVPDNENPNDDGYLVVNAGVSERNVDGFDGYVSWLPKLAFEEQYKNDNLTFGQAVELLKGGKKVARKGWNGKGMYLLLATDIDFKTKANLSDMQNENGELTVPSITMKTADNKFAVGWLASQTDMLAEDWVVVQ*	mmseqs_cdd	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0025	shell	direct	high	518	0.998	GCA_003985315.1_01377
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	205410	206108	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	21888	22586	GCA_003985315_1_2_195	GCA_003985315_1_2_195	+	692324	.	PDB:5NGJ_B	Tail-tube-protein	MFGAYDELLAAAFWSEWSAGASPNTLSVGATKHQFAIAKDFSDINVNHVFTGCVVSSFGLTIDTSSLIKLKFGMTGLGYQESKTTSFAKTPTKTPDTAKASGLSIGEIKVDGTKLDVCVESFSFELDNQTEVQKCLGDNIYGGNILAMLANITGSMTIAYSQKAHEMITNQLTGVTLSLEIPINFGSNKYVIKIPKFQVTGEIPSPSGTDLVTVDLSYTVVDESPVIEKHTA*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0026	shell	direct	high	698	0.999	GCA_003985315.1_01378
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	206192	206338	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	22670	22816	GCA_003985315_1_2_196	GCA_003985315_1_2_196	+	692324	.	.	hypothetical protein	MEYITIIVDFMKYLIEKHGLFVIWLMVASLITLYKLDMILTAVHLFFN*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0027	shell	direct	high	146	0.993	GCA_003985315.1_01379
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	206390	206851	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	22868	23329	GCA_003985315_1_2_197	GCA_003985315_1_2_197	+	692324	.	.	hypothetical protein	MAFDLTLLKKDAKMSAKREIEFDGLELTLQIQASEAFKRAAAEVQKIANTPKKVTKDSLKRGNQDEIGEYEAMLFILGEYCISQWNVTADGEPLAINGDNFLILLDQGFEKDKLTQFITLLFETYASLSQEFEDNKAKLVKKSTTATNGKKSG*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0028	shell	direct	high	461	0.998	GCA_003985315.1_01380
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	207287	207559	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	23765	24037	GCA_003985315_1_2_198	GCA_003985315_1_2_198	+	692324	.	.	hypothetical protein	MIKPDAKEQGEFQITCHQATNQAMNYLHGLHAEIKRLGGVAPSLDIDEDEIARAIITRMVQGKRFMVNLDYWNNNLNVIMVDQKKLGGAE*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0029	shell	direct	high	272	0.996	GCA_003985315.1_01381
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	207819	208001	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	24297	24479	GCA_003985315_1_2_199	GCA_003985315_1_2_199	+	692324	.	.	hypothetical protein	MQDNAKKSDATHHSAQLLRDMFSCLNQAMSRETEKFHQEQKKVKEEINRGARITNHRISL*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0030	shell	direct	high	182	0.995	GCA_003985315.1_01382
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	207964	208800	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	24442	25278	GCA_003985315_1_2_200	GCA_003985315_1_2_200	+	692324	.	.	hypothetical protein	MAQELPTTESLFDFLYLDSIKIRSFYAQLTGFGSLASIKANNALNSSLVSEGAFGVNAMAKIDAKVNYATGENQSSEKTYDATPTLPREMIDKLDELGFISRELGENSAGNLVLLNGVLSITDIETLQNLLEPTMYFATEEEYKQLYGDRKRQAVKKKLEENKPVVQLIKAIPYALEARLKVGEDMVWMTLNRGEMVGNPHDINLKHGKVLFGEYYVLGVLDAIPNDDMNIDMTTGSFGDVILELSQSLKETMGRNTSSYGITPIAIFRVIRTNQQAK*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0031	shell	direct	high	836	0.999	GCA_003985315.1_01383
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	208833	212720	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	25311	29198	GCA_003985315_1_2_201	GCA_003985315_1_2_201	+	692324	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MGGFLLGEFMSNTYRLDIQVNADSANTALGNLKEHFDKIEQSSGKAGVGIDGFSDKADKASKSSKKAGDEAKKAGDGAKKFGDDAKKAGNDIDGLKHKADGLKTAFGTLKGVMFTALAVAGVGGIIATADDMQTLTSQIKIATTSTKDYAHAMSEIERIAMGNMVSLDSVGQLYASNERSLKQLGKSQDEVIKFTENITTAMRVSGGSAESQAAALTQLGQAMASGVLRGDEFNSVAEQAPVIMELMADSLGVTTGKLRDMAKEGKLTSKVVYDALAGASASDKLAEKSKKMSTTISGAMQNIQTQWRLGVDAIMNGEGGLSSVLADGINSIALGASSFVDSLPAINQAITDTIAKAKEMGTAFLESDFGQSAIQTAKDAFEQLKSAMQGVVDIAGDVKAFFEKNPELAIALASGVGAVAGAFLLFKGVLIVWAGVATLATVAGGALAAVMAVLTSPITLVIAAFAALVAAGVYVYRNWDTIKQKANHAWQSIKETWQGVGEWFGELWDKVKQTFFDWLSQMPKPVQDMVANIGEIFSTIVNVAGAVWDGIANIAKSVWHAITEFVSYAIDKIKPVIKSVLEFFKNAWDGLVSIAKTVWQAVVSVVSHVFDKISGIISTQFEAMKAIFMAGVTIFASIFNAGFEMVKTIFSTAFKVIKAVLTGDMQGVKDAIKDGFQKAVDILKKLVGNIVDALKKLGKDLLQVGRDAMQGFINGISEKIDAAVSKAKEMASSVKNAITGFFDIHSPSRVMKQVGGWISEGLAIGIAYKAPIAAKEAKNLAKSVKNALESDLQKTAEEIFLTKQHIKGNPYAQLTKDIAFGKYGKQDTSRLQKLAQEQILQSNILTLTQQLHEAQQNLANVGLTSIEIMQRQYDETDKSVRASLDLFEQVKKTSQELIDATNRHEATQAFESTLKDIKKQMAIMGSQDPLAEFLYDLQNADKYAYYTTEQLATLKDEMIKLQNAKDAKQASDGIKESLKDINKQLALLGSNHPLDDFFYELEQTDKYAHATTDEINELTDAIFKLQDAKDKLNAKQAFDKLMKDTALANETPAQRLQREYDEKMAVIDRYEQMHSDKLGDATSLRQQITERYEQAEKDAKVKNYQEHLTAFAGFLKNTAGEQSKAYRVMFAASKAYALADVGVKMGKAVADAWADPSAVTIWQKLANVAKVSLEQGHVLSMINAISPKGFATGGYTGNMGINQVAGVVHGQEYVLNAKATKRIGVGNLERLNRGDGIGGHVNHINVHVTVNSDGSNVQADTQMGKTMGEAMAKIARQVVIQESKQNGHLDRLYRR*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0032	shell	direct	high	3887	1.0	GCA_003985315.1_01384
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	212823	213155	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	29301	29633	GCA_003985315_1_2_202	GCA_003985315_1_2_202	+	692324	.	PFAM:PF05939.12	minor-tail-protein	MKTFTWDISADSSETTALNTTITAFGDGYEQAVSFGINNSRKSWQCSRTDKKAVIDEIYRFLIDTKGVEPFNFKPLTDEPSIKVRLDGEISRQKTGGDVWQIGFTLKQVF*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0033	shell	direct	high	332	0.997	GCA_003985315.1_01385
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	213246	213629	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	29724	30107	GCA_003985315_1_2_203	GCA_003985315_1_2_203	+	692324	.	.	hypothetical protein	MSETTLTELSRTEAQVLQSFIAQVDFWKNQHGDKAATIEVIYYPEDDGFEVSNNEPNNGVLKRNRTTAFRADLLAWASNQLCQLQGWDNSQTVTAFILSFKDNRYGVRAALASETTDKADDGAEQTQ*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0034	persistent	direct	high	383	0.997	GCA_003985315.1_01386
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	213772	214440	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	30250	30918	GCA_003985315_1_2_204	GCA_003985315_1_2_204	+	692324	.	PFAM:PF05100.11	minor-tail-protein-	MSFNTDIQQTTVQGFITLYELDARKLGGEIYRFHGHNDGVIRWQGQDFHPIAIKADGLEMRSDGRASTPKLSIGDKINGIQGAVSALCRLYDDFARAKLTVTHTLQAYLDSHDAQNYRQQEWYIEQKVSENPSLGIVEFELSNPVDFEGQKIPVRQITTYCNEAVCGRYRGEVCGYTGTARFTHDGKPTDDPTLDRCSGLLAHCKLRDNEGSFCGFPAAGLV*	hallmark_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0035	shell	direct	high	668	0.999	GCA_003985315.1_01387
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	214437	214640	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	30915	31118	GCA_003985315_1_2_205	GCA_003985315_1_2_205	-	692324	.	.	hypothetical protein	MADKASPQARKKATANYFDKSLARIGLVISHTEPHVLDALNQIMAHKDCSKAMAIKIALVEYAKTLD*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0036	shell	direct	high	203	0.995	GCA_003985315.1_01388
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	214787	214909	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	31265	31387	GCA_003985315_1_2_206	GCA_003985315_1_2_206	+	692324	.	.	hypothetical protein	MIVILSIAFPPYVTARLVLAQSTPLVLMKCIVLQYTNKVN*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0037	shell	direct	high	122	0.992	GCA_003985315.1_01389
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	215023	215274	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	31501	31752	GCA_003985315_1_2_207	GCA_003985315_1_2_207	+	692324	.	cd08073	Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains. This family contains bacterial MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+)-like domains at the N-terminus of NlpC/P60 phage tail protein domains. These domains contain the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity for the release of ubiquitin from ubiquitinated proteins (thus having deubiquitinating (DUB) activity) that are tagged for degradation.  The JAMM proteins likely hydrolyze ubiquitin conjugates in a manner similar to thermolysin, in which the zinc-polarized aqua ligand serves as the nucleophile, compared with the classical DUBs that do so with a cysteine residue in the active site.	MRLTKTIKEAIHAHAKICYPAECCGLIIDGQYYPCDNVAPNPAEHFEIDYLDMVEMQEYHGEIQAIVHSHPNGNAEPSEIDRV*	mmseqs_cdd	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0038	cloud	direct	high	251	0.996	GCA_003985315.1_01390
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	215275	215820	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	31753	32298	GCA_003985315_1_2_208	GCA_003985315_1_2_208	+	692324	.	PFAM:PF03665.12	minor-tail-protein	MGVHGLDWVICAFGYHAGGEQYFDVKCHKPKAYQAPLLGREYYHGVQDCYSLVQDYYSRELDITLPSFARSDDWWENPNHEPLYENNFTKAGFIKVQDKNDLQKHDVILCRVGRTHHVNHALIWLGDDGALTSEKTPDCVGNALILHHPHGGLSVREIYGDSWQRRTAMVVRHQASNQTNL*	phrogs_hmm	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0039	shell	direct	high	545	0.998	GCA_003985315.1_01391
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	215800	216012	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	32278	32490	GCA_003985315_1_2_209	GCA_003985315_1_2_209	-	692324	.	PFAM:PF15919.4	toxin-antitoxin-system-HicB-like	MVSLPPSVWVKVLLLNEMIAQNVSQAELAKRMGIVPQSLTRLVDLSHTTKIDTLANAFAKLGKQLQVGLV*	phrogs_hmm	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0040	shell	ambiguous	low	22	0.103	GCA_003985315.1_01391
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	216031	216213	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	32509	32691	GCA_003985315_1_2_210	GCA_003985315_1_2_210	-	692324	.	COG1598	Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. 	MHYPVTLTPDTDGFCVTFRDIPEAISQGDTTDEALDMAQDALMVAMEFYFEDNRAVPMPS*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0041	shell	direct	high	182	0.995	GCA_003985315.1_01392
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	216229	216435	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	32707	32913	GCA_003985315_1_2_211	GCA_003985315_1_2_211	+	692324	.	.	hypothetical protein	MVKAITPDEIRAAGEQFKSHPENNAPATADKLIANKSGFVLSERSLKNLQMIIAPLPKQWHRQAVSWA*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0042	.	unmatched_CDS	none	0	0	.
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	216405	216524	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	32883	33002	GCA_003985315_1_2_212	GCA_003985315_1_2_212	+	692324	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MAQASGKLGVNVRWGGAWMVITGKAGTPQEWVKAYRAGG*	common_virus_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0043	.	unmatched_CDS	none	0	0	.
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	216849	217949	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	33327	34427	GCA_003985315_1_2_213	GCA_003985315_1_2_213	-	692324	.	COG0842	ABC-type multidrug transport system, permease component [Defense mechanisms]. 	MRRFIKQYLTIWLDVIKDRSIFLTMVLSVVFYGFFYPFAYQAQRPADLPIVIVDEEQSPLTQAIIHTTSHTPNIHVLAVVSDFRQAQMLVQSAKADGILLLPNNLSQSIHHGQTGGVGLYLSSAYFLRTQNIGAGLVSSLQATIIQELGQVTQTRHKPMPELIHQSALFNPLSGYGSYIFPAVAPIIVYQTIVLGLAMLVAGYRQRLWRASACDFLAIYAVALTIGCLSCFYLFGFVFWWHDYPRGGNFWGMMLGVPIFVSCAIGVALLIASWVADGAKVGVLLIFSSVPLFMLTGLAYPLMAMPKFLQPLAHALPTTQGVQMFIQLNQMGVPIQDIWQKMAYLASVAVLCLGVAFWRLRLVNRSV*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0044	persistent	direct	high	1100	0.999	GCA_003985315.1_01393
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	217949	219127	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	34427	35605	GCA_003985315_1_2_214	GCA_003985315_1_2_214	-	692324	.	PF12698.7	ABC-2 family transporter protein	MIVRFIRAFCQAFLRELNRLSCNRFDLAMVMIAPLVIIVLFGAMFYHGKAHHLPVALVDEDNSELSHLIYQHIHHNETIKTVLILDDIQDAHHAINRLDVGGYIHIPKDAQNRLVRGENTGIHIAYNQSFFSIGSAISSALSKSTKGGIAKFIQTKHLTGVLPHLSGNMPHVKISVLFNPNLSYEFFLEPFLVAAVLHLLLCCLVAHAIGQEFHEHSVHEWLCHSPFGALFGKISVYVLIISLWHGLWQAWLIGVRGWFVAGSLFVLIIGQLLFYLAYALFGAMVVLKTQNINKSYGILAVYGGSSMSFAGVTLPLNNASGFTQFWSQIIPFTPFARLQVEQWVIGSPFIITLAHLNSLLIFVLIFAIGSLLLLRRINKTLIAMPNTPKDDS*	hhsuite_tools	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0045	persistent	direct	high	1178	0.999	GCA_003985315.1_01394
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	219155	220318	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	35633	36796	GCA_003985315_1_2_215	GCA_003985315_1_2_215	-	692324	.	COG1566	Multidrug resistance efflux pump [Defense mechanisms]. 	MTDKTDDVKPDTDGNHPKKQKPHTQAKSKPRPLALFLLLALIGSVLLVIIFGLIQSYGTPQNLPTANAIGSTNEPPKGVIAHLRQKITGPATFSIQGRVEGETVNISTKLPSRVAAIYVKEGQAVRAGEPLVQLISPEIDAKKQQAAAMLQSALAFQSSTDRGTRQENVDTLYANWQSAKAQATLAEESYRRGEYLYQEGVISRQRRDEMRAAKQSSAQIAQAAQQQYLKAQRGRTDELKSSADAQVQIARAAVAEADALDAETMLYAPIDGTVSKIYIQSSELVMPAVPVMSLLDNHPTITISVQENQYSHVHALPKLTGFIPALNKTADFKIVHTDDEGEFATIKNTRQTGGYDIHSFKTKLEPITPIEGLKVGMSVIFDITVLP*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0046	persistent	direct	high	1163	0.999	GCA_003985315.1_01395
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	220365	221861	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	36843	38339	GCA_003985315_1_2_216	GCA_003985315_1_2_216	-	692324	.	5NSW_C	Multidrug efflux outer membrane protein	MSIKCQLVAIDNIIKPCYDKILNFVYFSTMKMPYFLLLGLLLVHQADADYSLLDAQKQLMSSSSAIQASHALYQADVLQAESLQKLHYPRISLNAHAFALQQNSSIPLDHIKEQTAQHINTHFDHRFGSAPDGLLDALHDSTQTALDRLPDHQDVKLRHDGITPNITATMPIYTGGLISSSKNIANLQAQRGKFGLQERISLAKLNLIRHYFNVQLQKQLTDTQQNMLSAMQLHVDNAYKLEQQGFISRGQRMQFEVARNQVQRLYQSTQNQHQNSIYELAVLLGLPHIEPLSTPLFINTQHRPNWQALLKDSQNTPLNQKLKTDTQLADENIALRQSTKKPKIAAVARYTLDDKPDWFAGVAVSYNLFLGIDRDKQIEAAHLQKQAAQLGHEQVNEHITTTMHTAYGEMVLAQKTHALLQQNRQAAKENLRIQTLSFQEGFGTVAGVVDAQSALSQIDSETALNAYRYLLALATLLHYTGTIDDFDDYLSLDDAHKL*	hhsuite_tools	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0047	persistent	direct	high	1496	0.999	GCA_003985315.1_01396
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	222123	226295	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	38601	42773	GCA_003985315_1_2_217	GCA_003985315_1_2_217	-	692324	.	PDB:5XDR_A	Replicative-polyprotein	MHSTDNLPVLAKDRHYLNKLKQKMNSTTGDLKTKCKIRYDAIYERSAEQVANRMDSIPKNLSEKLNHDLPVTAEADTLIQAIRDHQVVIIAGETGSGKTTQLPKLAMMAGRGITGQIGHTQPRRLAARSVAMRIAEELGEPLGQTVSFKIRFTEEGGKHSIVKLMTDGILLAELGSDKFLANYDTIIIDEAHERSLNIDFIMGYLKRLLPKRPDLKVIITSATLDTQRFSDYFAANGKPAPVYIVEGRSYPVEVRYHPLTDTIVSSQDDDAFDDIEDNLPRALTAAVNECFEDARTKGHPDQADILIFAATEAEIRELQEVLMLYAPAHTEILPLFARQSYGEQQKIFAPSGKGRRIIIATNVAETALTVPNIRYVIDLGFARISRYNYRSRIQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFNSRPEFTEPEILRTNLASVILQMERLQLGDVNAFDFITPPDLRLVNDGRKLLIELGALDDKSFTKTRTKKGRTQLSSLTKIGQQMAKMPIDPRLARMLVAGDTFDCLADILIIVSALAVQDVRERPINKHAQADQKHALFRKEDSDFLFYLELFAALFDQHSTNDNQALSSNARRNFAKKHYLSYARIREWQKTHRQLSEMMAEMGFEINKQKNHQNDVKIDTKKGVRLSLKSGTSHQKSIKQALVGAKALKNDIDNKTSIHYANIHRALLSALLSFVAHKTDTVGEYLMARSQKARIFPASTLHKKGAQWVMAFEVVETSQVYMRTLAKIEPEWIIKAAPNLLKYHYFEPHWSKKAGRVRAYAQISLFGLIVIAKELVNFEQIDLVQAREIFIRDALVANQYGMQMKFLADNANKIKDIERIEDKLRRRDLLVDEESLYQFYDAKIPNHIASRKSFEEFYHDAENKTPNFLHFSDEDVLNEAVDDSREFPESWHLGGVRLPLSYVFDPAADNDGVTVHVPIKALAQVDPVALLWGISGWRYELVLQLLKTLPKEIRRQIVPIPDTCQKIFHQLDASSKMGLLDQLVAALKTLGVQAHTQDFAPDKVEDYLRPLICVVDDKNRVIEKSRDLPKLQARHRKTSVQSIAIEQGVHHHFPNHFNFVKNKHTSGIVMQEFSALKADTTQSAVFIATFTEMNAALAEHKKGVLTLIKGHLGAKQKQLTGQIDKAFKLAFAPLGDLEKLKNIVVHATLEACLYDYGPDFDHKPVSQHGDHARAAIAGLITQNNQWLISHLPLDEREFDDCQDLILKNFLLVGQEILRNLKEIYTAWQTARGKLLMLDQEIFGENIEDIEDQLDDLQLANFVYQTDYRHWRQYPRYLQALNIRLDRLQHNLEADLDAVYLLDTHMERLARCVKNPKFAEYRWLVEEYRINLFAQPMKTVQPVSAKRLETLWANLTTQ*	common_virus_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0048	persistent	direct	high	4172	1.0	GCA_003985315.1_01397
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	226572	227261	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	43050	43739	GCA_003985315_1_2_218	GCA_003985315_1_2_218	+	692324	.	TIGR02796	TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MNESISLISLVIEASVVVKLVMAILLLLSTISWVLIFHLGTKIGGIAKFDKRFERWFWTDDIDHQLSVVQAESERAGLELIFYTGFYDQNHQDQDSSLSDDKKVQIVERRLRMALGSEQVHLEKGLSTLATIGSVSPYIGLFGTVWGIMNAFIGLGQAESVGLATVAPSIAEALIATALGLFAAIPATMAYNHFATKSNTLYENRSLFCEGLISALVTNLAKKNTASTL*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0049	persistent	direct	high	689	0.999	GCA_003985315.1_01398
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	227287	227721	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	43765	44199	GCA_003985315_1_2_219	GCA_003985315_1_2_219	+	692324	.	TIGR02801	TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MVTSNRFARRQRPLNSDMNVVPYIDVMLVLLVIFIVTAPMLATGIEVSLPKEQTKPITQADKLPVIVSIQADGNLYVSHKNAIDVPITPDKLDTLLRQMHQDNTDLQVMVNADADNAYSRIMQIMALIQNVGITQVSLLSESVQ*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0050	persistent	direct	high	434	0.998	GCA_003985315.1_01399
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	227752	228552	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	44230	45030	GCA_003985315_1_2_220	GCA_003985315_1_2_220	+	692324	.	4G7X_B	Putative uncharacterized protein, TolA protein	MRLSDNHPTVNFDKSALILPILASVLLHTVIIIAVAAPLITPPTKPNTTIQTALVGQEAFNRAKTALSNHHANQNKPTATNTSSTITANDNDNAFMQAQNQHRYHPQVSTSATTTQAYHPPPNSAPFESNSPNIQNQPTNAHAKLAEYSNHVSDLEQSNHTESTPSRAQINAAITSVKHRIEAIWQRYPKQPNQTITFQVNMNQQGDVTSIQFGGGHPDLRESVEAAVYAAAPFYELGGMRDSIRLQFTTEQLIMDNNQTTNEPNH*	hhsuite_tools	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0051	persistent	direct	high	800	0.999	GCA_003985315.1_01400
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	228569	229831	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	45047	46309	GCA_003985315_1_2_221	GCA_003985315_1_2_221	+	692324	.	TIGR02800	tol-pal system beta propeller repeat protein TolB. Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]	MKSPITKVCLALTISFSAALTHTYADDELIVISEQVAPSQYPVAVMPFSEAHQMSHYLSLAGLGTTHQNLPQHTQTNSDILNNLTAWRNRGFEYIILAQSHQILGNKLAINYEIIDTANGLVSVKHTQISDNHPASIQAAYRQISDTIYQIITGQPSDLMGKIAYVEESGSPQNKISSLKLIDPSGQLIRTLDTVNGSIITPTFSPDGLSIAYSVQTKNNLPIIYIVSVSGGTPKLVTPFWGHNLAPSFSPDGGSILFSGSHENNNPNIYRLNLHTNHLDTLTTFNGAENAPNYLADASGFIYTADKGTRRQSLYRYDFGTTHSTQIASYATNPRLSPDGSKLVYLSGGQIIIANTKGRIQQSFRVLGTDVSASFSPSGTRIIYTSNQGNKNQLMIRSLSSNAIRTIPTSGTVRDPIWSK*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0052	persistent	direct	high	1262	0.999	GCA_003985315.1_01401
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	229831	230100	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	46309	46578	GCA_003985315_1_2_222	GCA_003985315_1_2_222	+	692324	.	.	hypothetical protein	MPMSIPTKVTVGYTQRRLFMVSMTVGLISLSGCQHIQVTKSPIPIIIHSHTKSPSQPKPTPTDAVPTKNRPIFPPTQKSNTIFILEDWF*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0053	persistent	ambiguous	low	3	0.011	GCA_003985315.1_01402
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	230097	233651	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	46575	50129	GCA_003985315_1_2_223	GCA_003985315_1_2_223	-	692324	.	PDB:5JXR_A	Chromatin-remodeling-complex-ATPase	MIDTFKPKLDLPTKANFKTTLPLLGGADLSFWLALAAKSEERLIVMIANHQNELNQLDTELSFFGIDAHVFPDWEILAYDQLSVHQDIISERIALLTRMPTTGVLLVSTQTLMQRIAPPSWLIGQHFDLAVGDKFDIHEQRLRLTKAGYVQTENVFEPGEFAVRGSIVDIFAVGQSLPFRLDLFDDNIETIKFFDPDSQRTLSDNDLAQLKKDAQEGMNTHHAQKLPSSAKITEFRLLPAREFPLEEGKEMFRQNFASLFPNASARKIEFYNDVMAAIAPQGIEFYAPLFFELDAWMKTGNLFSYLPDDTLVVSHDNLSACHDEYYQQIQARHHSRAHDKSLPIMPPDYLFLANNEFHQVLKAYPRVVINTNHDTAKIGAMESLPPPILPINHQAAKPLSELLSFIKSGQVPILLVAESAGRREIILELLKDKVAVKVVDNYQEFINNLDDFNTDCIALSVAPIERGLWLRDETGGLCIISETQIFGRQVLQTRRRRQSSVSQAFLIKSVTELTEGALVVHLEHGIGRYQGLVVLDVGEGEQEFIHLKYADDASIYVPITNLALIGRYSGSDLQTVSLSKIGSGKWEKAKLKALEQIHDVAAELLNVQARRNAKSGISFDIDMSQYELFASQFAFEETIDQAEAIHAVMHDMKQSKPMDRLICGDVGFGKTEVAMRAAFIAVQAGYQVAVLVPTTLLAGQHEDSFLNRFADWPIKIESLSRFGNKKHQDAILAGLADGTVDIVIGTHKLIQDDVKFKQLGLMIIDEEHRFGVRHKERIKALQTNIDSLSMTATPIPRTLNMALSGMQDISIIATPPARRLAIKTFLLPKSDETIKEAILREILRGGQVYYLHNDVASIEAAADTLRELVGEARVAVAHGQMNERELSVVMNDFYHKKFNVLVASTIIETGIDVPNANTIIIHRADKFGIAQLHQLRGRVGRSHHQAYCYLMVPSLKGLSSDAKKRLNAITRANTLGAGFMLASEDLEIRGAGEILGKEQSGNMQTIGFGLYMDMLERATNAIKQGKTPSLATPLDLVSDIDIHASALIPDEYLGDVHERLVFYKRISSLDDVNQLIDIRTEMIDRFGTLPTQTQNLFAVHRIRIRAKALGITKIDATQTTISIEFRADTPIDGLAIIKLIQSNDGYRMNGATAIRYTSQELMDTQARIDKVNELLLYFESTKTA*	common_virus_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0054	persistent	direct	high	3554	1.0	GCA_003985315.1_01402
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	233656	234318	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	50134	50796	GCA_003985315_1_2_224	GCA_003985315_1_2_224	-	692324	.	PRK00043	thiamine phosphate synthase. 	MTLQSIDKVPKLYLLTNDDELTTLLDKLERVFDTGAVSLLQVRRKSTLKLYDLATVYREAEMIVSLANDYDIKVVMNDSLELASHFGTGLHLGQRDGSVRVAREILGDHVVIGRTCHTDLALFKEAKREGATYGAMGTAFASITKPRAKIISKDILKKACELDFPLCVIGGITLENIHQLRDKLNGAAIDYIAVTADIMGHSVDTIADKCLAWQQKLNTW*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0055	persistent	direct	high	662	0.998	GCA_003985315.1_01403
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	234471	234908	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	50949	51386	GCA_003985315_1_2_225	GCA_003985315_1_2_225	-	692324	.	6AF2_D	HIT domain-containing protein	MFQLHPTLAKDTFLVGDFPLSTVRLMNDCQFPWLILVPRVSGIKEIYELSAADQVQFLRESSWVSSQMAKIFGADKMNVAALGNQVLQLHFHHIVRYQNDAAWPNPVWGHEAMPYTQEVLSHMQQTLMMALRGHHQMPFDWKMDV*	hhsuite_tools	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0056	persistent	direct	high	437	0.998	GCA_003985315.1_01404
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	235485	235682	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	51963	52160	GCA_003985315_1_2_226	GCA_003985315_1_2_226	+	692324	.	PFAM:PF16777.4	transcriptional-regulator	MPKIVANPKTRAQIQKDSDARRGVKPIGFKVPIEFAELLDELAKQSGKTKNIIIMEAVELWAKQL*	phrogs_hmm	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0057	persistent	direct	high	197	0.995	GCA_003985315.1_01405
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	235895	236299	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	52373	52777	GCA_003985315_1_2_227	GCA_003985315_1_2_227	+	692324	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIAILKGGDKTAHGIFFPDVPNLASACDELQDIHKMALECLDVHFSGLVADGEEIPLPTNFDAHTQNSQFDGMMWAWVDVDLSKYDVKSHKINITLPNHLIAKIDEKVSAHKSLYKSRSNYLAQLAMADLA*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0058	shell	direct	high	404	0.998	GCA_003985315.1_01406
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	236703	236918	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	53181	53396	GCA_003985315_1_2_228	GCA_003985315_1_2_228	+	692324	.	.	hypothetical protein	MTDSTTSPARQKATNTYRQKALANIALVISHTEPHALDALNQIMAHKDCSKAMAIKVALVEYANTLSQTSR*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0059	shell	direct	high	215	0.995	GCA_003985315.1_01407
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	237034	237579	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	53512	54057	GCA_003985315_1_2_229	GCA_003985315_1_2_229	-	692324	.	COG0219	tRNA(Leu) C34 or U34 (ribose-2'-O)-methylase TrmL, contains SPOUT domain [Translation, ribosomal structure and biogenesis]. 	MSQFSDALIHIVLFSPKIPNNTGSIIRLCANTGAQLHLVKPLGFELDDTRLKRAGLDYHEYATLSVHDNWQETKSALKSLGVERIVAMTTKFSRPFYEYQFKLDNDQHKVALVFGSETDGLPEEVRADIGANHWLRLPMLPDSRSLNLANSVGICLYEVWRQLGFVGDIGQSVGYHKPTSR*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0060	persistent	direct	high	545	0.998	GCA_003985315.1_01408
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	237827	237967	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	54305	54445	GCA_003985315_1_2_230	GCA_003985315_1_2_230	+	692324	.	COG5510	Predicted small secreted protein  [Function unknown]. 	MKKVLVASIAAVVVLTGCNAIKGFGKDVSKAGEAVSDTAQKVEKKI*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0061	persistent	direct	high	140	0.993	GCA_003985315.1_01409
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	238049	239224	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	54527	55702	GCA_003985315_1_2_231	GCA_003985315_1_2_231	-	692324	.	COG0635	Coproporphyrinogen III oxidase or related Fe-S oxidoreductase [Coenzyme transport and metabolism]. 	MYPDLLDPAHIPLSLYIHIPWCVKKCPYCDFNSHALPSQVPFENYIEALLSDAVSQQSLVSNRQIDTVFIGGGTPSLLPIESFKRLFDGLRLIYDFAPTCEITLEANPGTLEHSPFDEYLTIGINRLSIGVQSFDHNALTVLGRIHNPDQASNAIRAARIAGFDRVNADLMYGLPNQNPSKAVNDIQTAIDAGATHLSWYQLTIEPNTTFYCTPPQLPDEEIMAEIETLGQSVLTKHGFYNYEVSAWHGPNDAPCQHNLNYWQFGDYLAIGAGAHGKLTLKNHPDYQDGIYRYQKSRQPKDYLAFEDAPKMVNFERISDDNLPFEFMMNALRLKDGVSTDVFETRTGLLISTIDNEMLPLQHQGLMVLDPLRIAPTRLGFRYVNYLVSQFI*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0062	persistent	direct	high	1175	0.999	GCA_003985315.1_01410
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	239238	240413	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	55716	56891	GCA_003985315_1_2_232	GCA_003985315_1_2_232	-	692324	.	PDB:1OYW_A	ATP-dependent-DNA-helicase	MTETTVKNFDDLPLSEPILKAVQALKFDQLTPIQAQILPHTLANQDAIGQAQTGTGKTATFLITIIESLLKRPFQADEIRYLGEPRALVLAPTRELAQQILADCRELTRFSQLYNLCITGGSDFDKQLEQLHKRPLDILIGTPGRIIDWVNKGELFLDRVEVFVLDEADRMLDMGFIPDIKRIVRHMPSNTERQSLLFSATFNQDVMNLAYRWLHQPAFVEIAPESKTNQAIDQQFYLVTEREKTSALKQILADDSVKKTIIFANRKDQVKRLYDYLRRHHKVTMLSGDVAQQKRERYLQRFKDGEVNVLVATDVAGRGIHVDDVTHVINYTLPDMPDDYVHRIGRTGRAGLSGVSISFVSENDAFNLPALERHIDQKFKLNQFEFLDEHK*	common_virus_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0063	persistent	direct	high	1175	0.999	GCA_003985315.1_01411
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	240444	240884	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	56922	57362	GCA_003985315_1_2_233	GCA_003985315_1_2_233	-	692324	.	.	hypothetical protein	MMMKNKWMRGLAILVLSLPTVTYAKTAAPKASEAPEVSLTQEEQMAIDFCDFSAYGVMHIAGDHQGGATKSEALTNHDKRMAELKDLIDLDPETATMLDKYWKGAIDRIFQESVQKTDAEKQAFVMGVGESSFYSCLDQVLKTPKN*	.	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0064	persistent	direct	high	440	0.998	GCA_003985315.1_01412
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	241234	242112	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	57712	58590	GCA_003985315_1_2_234	GCA_003985315_1_2_234	+	692324	.	TIGR02139	sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]	MPNQPIPLKNRARRVMPFFGLSMGISIFALGLLVILPFLMMILTTLQMSFDDIMQTIREPQVFAAIKLSLSMAMLATLTNLIFGTLAAWVLVRYEFWGKSFLNALVDLPFALPTAVTGIALATLYAPNGLFGQWFTHLGILLFNEPIKIAFTPIGIWLALVVVSFPFIVRAVQPVLAELSVEFEEAAAVMGAGRLTTFCRVILPEISPAMLIGAGMMFARATGEYGSVIFIAGNIPMQSEILPLIIVSKLEQFDVAGAACVSLFMLLISLVFLFTMNFIQWKLSARLGAKTN*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0065	persistent	direct	high	878	0.999	GCA_003985315.1_01413
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	242157	242996	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	58635	59474	GCA_003985315_1_2_235	GCA_003985315_1_2_235	+	692324	.	COG4208	ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]. 	MSHTSSYSYQKNPATRDKPWVRWSLIGIAVVFMGVMLVVPLVSVFYEALKEGWQAYQAALLEPDALASIKLTLITAAIILPINTIIGVALAYLITRHQFRGKFVITTLLDLPFAVSPVVAGLMFVLVFGANTRLGGYLESMGIQVIFATTGIVLATLFVTFAFIARELIPLMQAQGDSEEQAALTLGANGWQMFWKVTLPNIKWALLYGIILTNARAMGEFGAVSVVSGHIRGETNTVPLMIEIAYNEYAFTLAFALSSLLALLALITLVAQGLMSHKK*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0066	persistent	direct	high	839	0.999	GCA_003985315.1_01414
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	243089	243808	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	59567	60286	GCA_003985315_1_2_236	GCA_003985315_1_2_236	+	692324	.	COG1118	ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]. 	MSIKIQNIHKTFGDFVALGEISIDISTGELTTLLGPSGCGKTTLLRIIAGLENADNGRIYFDSIDVTDIPVQHRGIGFVFQQYALFRHQTVAQNIAFGLTLLPRNTRPSANTIDRRVDELLDLVQLSHTKTRYPHELSGGQRQRVALARALATEPKLLLLDEPFGALDAKVRKSLRDSLKDIQREIGITSILVTHDQEEAQAISDKIVIMNHGQIEQIGTPSKLFAQPSSDFVVDFLGL*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0067	persistent	direct	high	719	0.999	GCA_003985315.1_01415
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	243850	245268	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	60328	61746	GCA_003985315_1_2_237	GCA_003985315_1_2_237	-	692324	.	PDB:3BH0_A	Helicase-ATPase	MAKAKSSYICQNCGAIYGKWAGQCTDCGEWNTLVEAPNTSLPHHHKSKTTTAPRKTANYAGAVSAVMTLDHVGVTLETRMPTGIGEFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAINMAAGDSLSGSALYITGEESLSQVAMRAVRLGLPTDRLRVLAETNVDTICAALTTEQPAIAVIDSIQTLFTEAIQSAPGGVAQIRESAAVLTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVDTVLYFEGESDSRFRMIRAIKNRFGAVNELGIFGMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALVDDSQGQPRRMALGLDYQRLSMLLAVMHRHGGIHTSGMDVYVNVVGGVKVMETGSDLAVLIACASSIKEKPLPVRLCVFGEVGLSGEIRPVPNGQERLKEAMKHGFTHAIVPRANAPAANHPQFKNIQIIAVDRLDEAIYQAFEINAG*	rep_hall_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0068	persistent	direct	high	1418	0.999	GCA_003985315.1_01416
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	245566	247398	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	62044	63876	GCA_003985315_1_2_238	GCA_003985315_1_2_238	+	692324	.	COG1274	Phosphoenolpyruvate carboxykinase, GTP-dependent [Energy production and conversion]. 	MTAKITAPDFVRHQALIHWVAEIAALTKPAAIEWCDGSEEENQRLIDLMIKNGTMIKLNEDKHPNSYLAFSDPTDVARVEDRTYICSKEEIDAGATNNWVEPSQMRTKLNDLFDGCMAGRTMYVVPFSMGPLGSHIAHIGIEITDSPYVVVSMRKMARMGKEVYDVLGADGEYVPCVHTVGSPLTEGQKDVAWPCNDDKYIVHFPETREIWSYGSGYGGNALLGKKCLALRIASAMGREQGWLAEHMLILGVTNPQGKKHYIAAAFPSACGKTNFAMLIPPAGYEGWKVETVGDDIAWIKPSEDGKLYAINPEAGFFGVAPGTNTKTNSNCMSTLGSDVIYTNVAVTDDGEVWWEGKTKETPANLTNWKREPHTGAERAAHANARFTVSAKQCPSIDPQWENPEGVPISAFIFGGRRADTVPLVSEAFDWVDGVYKAATMGSETTAAATGQQGVVRRDPFAMLPFTGYNMADYFNHWLQMGENLGKKAKAAGNQLPKMFKVNWFRRDTNGDFVWPGFGQNMRVLQWIIERCEGTANAVRTPIGLVPTYDDINWDQSDFTKAQFELVTSQDKDAWIKELESHAELFDKLGERMPTALKAHNAKLKADIEQA*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0069	persistent	direct	high	1832	0.999	GCA_003985315.1_01417
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	247556	250423	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	64034	66901	GCA_003985315_1_2_239	GCA_003985315_1_2_239	-	692324	.	PDB:5EMI_A	Cell-wall-hydrolase-autolysin	MKKHTKSSISTQILKPLSLAISSCILVACSSTGTPAKPVSQTPKPIPQAKPSQQINISSGNTNLGNTKTGADVDVLDVQMLDALEALLQATDMSMVEGDELAIQRYGNLWDRVRRGYRINEMTNARIEAQKSWFYTRQTYLDRLTARASRYLHHTVAEAERRGIPSELALLPIIESSYDPTATSNAAAAGLWQFIPSTGRIYGLNQSATYDGRRDVIESTRAAYDFLTSLYNQFGSWELALAAYNAGPGRVSRAIKANQDQGLPTDYWSLKLPTETMNYVPRFLAVAQIVRSPNTYGINLPAIANHSHFRTVPVNYGVSLSEVATVTGLSVSELRLLNPALLNFTVDEIGPNRIVIPDSLPNQIDNQLASLKGYGFGGDYIATAPAQSITYVVPKSGATANTSSQQELIAANTLPTTIAQVTPNNTIVQEPALSKSEINLIAAEIQKTSPEVPAISPQDGNIQLNAVQTGQSVLDARGETKMLSFADGPKTQAVAQQPTQPVQVAVTPPAQPVQITVVSPTPEPISQPKPQLPPVTASIPVVSSPPVLVPPPPSRPRPEPASRPKPKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQTPSRQSTSTANTNSATHKVSAGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKTANTTMANTSSSPSVNKPESYTVRAGDSLTSVAATHGLTVGQLASYNNLANDAHILIGQRLWLVAGKVKRQPVSAQTPSRQSTSTANTNSATHKVSAGESLTAIARRYNISLHALAKENGLSVTDGVLIGQTLKLPSDAKAESSTPSRLGNTKNNSTRTPANTNIGITENYTVRSGDSLTMLSNRFGVAIGDLATANGLASNANLRIGQTLKVPKLTTTYTVKAGDGLIALARRYGISTQELAKMNNLEPTADLRIGQVLTVPNK*	common_virus_hmm	common_virus	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0070	persistent	direct	high	2867	1.0	GCA_003985315.1_01418
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	250618	251223	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	67096	67701	GCA_003985315_1_2_240	GCA_003985315_1_2_240	-	692324	.	PF13474.6	SnoaL-like domain	MAYSFIDKYIEYKGWFMKYSTRSVLRKAVAASMLTAVIRSAIQLTGRSFGKGASIGLFIGMIGVQSLITTNAYAISEQDVSRYASSMSSAANAQNIAQISRLIDDDAIISLSRGGKTTSLDKEGYLQLLQKSWATSSDYRYRINVADVVVTGNQARAQIVTTETWTQDGKPVTIKTASRATFSQVGNNAVLLRSVSQVTVD*	hhsuite_tools	hypothetical_protein	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0071	persistent	direct	moderate	558	0.921	GCA_003985315.1_01419
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	CDS	251329	252537	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	67807	69015	GCA_003985315_1_2_241	GCA_003985315_1_2_241	-	692324	.	COG4536	Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains [Inorganic ion transport and metabolism]. 	MPRPRTQNLANLSFVSIAIFTVSVAAIFIPSTAFAAFELGGTPTNLALLIFFICLSLVVSFLCSISEATLLTMTPSYIDTLEEDNPKGAALLKSVKVDHIEKSISAILTLNTVAHTLGSLGAGAQAVIVFGNAWFGVFSGVMTLIILIGTEIIPKTIGTVYWRRFAMPVAYYVRTINVALLPVIWVTEKISRMLTRGNQEIGFNRHEFLALANQGESLGQMSEMETRIIKNSLALGMINVEDILTPRSVVSAFDENMTVGDVFASYPKLPFSRFPIFDEDLDNATGFILKSDLLIAKANQEIHTPIKQFRRDINFVFAKMKLFDLLDLMLKEQVHIALAVGEFGEVKGLVSLEDVLETLLGLEIVDEFDRVDDMQILARQLMDKRMARLGAKLEEDAPFDEK*	mmseqs_cdd	nonviral_gene	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_CDS_0072	persistent	direct	high	1208	0.999	GCA_003985315.1_01420
GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote	cenote	tRNA	196697	196783	GCA_003985315.1	RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315.1_RYES01000002.1	GCA_003985315.1|RYES01000002.1	GCA_003985315_1_2	GCA_003985315_1_2@C12	13175	13261	tRNA-Leu	tRNA-Leu	+	692324	.	tRNAscan-SE score: 55.3	Leu	NA	tRNAscan-SE	.	C12	69015	183523	252538	GCA_003985315.1|RYES01000002.1@region_183524_252538@tool_cenote_tRNA_0001	.	.	.	.	.	.