core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	157654	157788	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	1	135	GCA_005502385_1_21_142	GCA_005502385_1_21_142	-	261151	.	pfam05480	Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	MTKLVEAIKNTVDAAQSQDWTKLGTSIVDIVSSGVGILSKVFGF*	mmseqs_cdd	nonviral_gene	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0001	persistent	direct	high	134	0.993	GCA_005502385.1_01106
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	157831	157965	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	178	312	GCA_005502385_1_21_143	GCA_005502385_1_21_143	-	261151	.	pfam05480	Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	MDKLFDAIKNTVDAGINHDWTKLGTSIVDIVSNGVSILGKYLGF*	mmseqs_cdd	nonviral_gene	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0002	persistent	direct	high	134	0.993	GCA_005502385.1_01107
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	158006	158140	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	353	487	GCA_005502385_1_21_144	GCA_005502385_1_21_144	-	261151	.	pfam05480	Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	MEGLFNAIKDTVTAGINGDWTKLGTSIVGIVENGVGLVSKYLGF*	mmseqs_cdd	nonviral_gene	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0003	persistent	direct	high	134	0.993	GCA_005502385.1_01108
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	158573	159328	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	920	1675	GCA_005502385_1_21_145	GCA_005502385_1_21_145	+	261151	.	PFAM:PF16339.4	lipoprotein	MKKYFILLFSSFLILSACDNDFSLTGDNKKEQNDTNNKKEKEDKHISKSDKNSIEHNDKTIQNQNTENTSNEQKSNEERDSKDTIEDVSSQNNNQIDFSNIKDRSTLESIIYGNYSEEQKIQAYNSAVANGIIPQGNVMEGPASVAYQSSLRVENGQEKSIYDRPNESDVSVDDENATPDPNAEINAAETEDEYYDALRKKYNGGLSSGELQTKHAIEQGYYEGDDAEEVYQNIKEQEADIAAGKWDKYNN*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0004	shell	direct	high	755	0.999	GCA_005502385.1_01109
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	159982	160515	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	2329	2862	GCA_005502385_1_21_146	GCA_005502385_1_21_146	-	261151	.	PFAM:PF10078.8	HTH-DNA-binding-protein	MRKQIEELLKSEVTGYRIAKKTGIGESVISNLRSGKRNLDNISLKNAELLAQFKNDWDLYTNAKQIEVDPESEIEFVESLYTNYSMINTNNENNGYFISFESINKVEVNDKELFEIEFKYADEIEIEEDYFKDEVERAIWDNEEVEDRIFFKKYEEALSYLKMRYDIFTLEEVIETK*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0005	cloud	direct	high	533	0.998	GCA_005502385.1_01110
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	160693	162144	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	3040	4491	GCA_005502385_1_21_147	GCA_005502385_1_21_147	-	261151	.	PDB:4OLS_C	Endolysin	MLMTRKQAENWLDNSEGRQYNADGYYGFQCYDYSKMYFYVVTGEWIGGLKASNIPFDNKAKIEKYATIIKNYDSFLPQKGDIVCFPDKYGGGYGHTAVVTRATLTQFEVLEQNWFGNGWTDGVVKPGWGPETVSRRWHYYDNPMYFIRFNFPKNVNVAKKAKRKLTSKKASGEIKRKKIMIVAGHGYNDPGAVGNGTNERDFIRKNLTPKIADYLRKTGHEVALYGGSKQSQDMYQDTAYGVRVGNKRDYGMYWVNKQNYDLIVEFHLDAAGASASGGHVIISSAFSPDEIDKDLQEVIKNNLGQIRGITKRSDLLHANVSAEINMNYRLAELGFITNKEDMDWIKKNSDKYAKLIAGAIHGSPIGGVVASKKKSSSKKLNVPKTIPNGYKLNDKGVPYKKEKGRYTVTTIKGNNVRTTYSDKAKITGTLPNGEEIIYDGAFAVNGYRWITYLNDDLKRRYIATGEIDKNGKRISSYGKFSKV*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0006	cloud	direct	high	1451	0.999	GCA_005502385.1_01111
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	162155	162448	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	4502	4795	GCA_005502385_1_21_148	GCA_005502385_1_21_148	-	261151	.	PFAM:PF04688.12	phage-holin	MEVKVIVRYIVLIMAIVNQFLANRGLSPIPVDEETISTIVLAGIGLYTAWKDNPTSKEGQWANKKLKKYKAEKKYRQATGQAPTKEYIEPSDLDELG*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0007	cloud	direct	high	293	0.997	GCA_005502385.1_01112
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	162501	163121	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	4848	5468	GCA_005502385_1_21_149	GCA_005502385_1_21_149	-	261151	.	COG4195	Phage-related replication protein YjqB, UPF0714/DUF867 family [Mobilome: prophages, transposons]. 	MTDLYSSMIELQGKENDWSIEMNTNKSNVLSFAPHGGGIEAGSSELALLISQKLDCNYFTFKGKLPSDNVKLHVTSTRYDNPELLNLMRNIDYSISVHGYADNEYARTLIGGSNEELKTLIKCNLINRGFDVQDAPTKLGGAKPNNITNKTKTGLGVQLELSTKQRKSFFSNNDFSKKVREDRYRWRAVMYEYAQAIEYAVKEYLA*	mmseqs_cdd	nonviral_gene	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0008	cloud	direct	high	620	0.998	GCA_005502385.1_01113
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	163176	163319	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	5523	5666	GCA_005502385_1_21_150	GCA_005502385_1_21_150	-	261151	.	PF09693.10	Phage uncharacterised protein (Phage_XkdX)	MRNIGIRYYKMGLYNEEQFALFVKRGFVTEEEFKELTGQEYQNVVKE*	hhsuite_tools	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0009	cloud	direct	high	143	0.993	GCA_005502385.1_01114
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	163312	163656	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	5659	6003	GCA_005502385_1_21_151	GCA_005502385_1_21_151	-	261151	.	PFAM:PF09693.9	tail-fiber-protein	MEIKQIYFYDGTPFLVMENKDGELEYPKEQWTDIAPPEGLYEPIHFDGEKWVGTPYEEWLEQQPKIEVEETPDDKDVLIADLTLQLMETQNTVVNLQNDMASLTLQVLESDINA*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0010	cloud	direct	high	344	0.997	GCA_005502385.1_01115
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	163670	165034	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	6017	7381	GCA_005502385_1_21_152	GCA_005502385_1_21_152	-	261151	.	PDB:4DIV_C	Distal-Tail-protein	METFKQGKVIARIDERGIDLGNINVNLYTMDNSTSALDIHIKKRNIFSEEKEFIPVNLNQTTFKPVLHLIAEDGSIFTNEELEVVKAEEGHVRYNVSDYVTRHVGRVQAKLFLIDEDSSNDSSHVADFYFKVNDSGLTKAIGKEIHVDMLDDIVERILLKDIERFRGPQGDKGDPFKYGDFTQEQLNSLKGDKGDPFTFEDFTQEQIQSLKGDKGDPFTYEDFTQEQLDKLKPELPNFSNWQKYKLTNDDGTNFYDANLQIDFNNNEQLTSLPIGTRYVVLTLNNPSGTNSNGWLTKYKRDGEAALIQYQPYNSTVIYQKRFYRSWSDWERVGSDVVDTGWLPLPLINGVSQAGSANQPKYRLVSINDTDLLFFKGAVKNISSRTMAFAKLPTNISQKISNYSEYSKVGINPYINTSVIYNITMTTSGKLEIIFDPNSTANANEPYYIDGIIPL*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0011	cloud	direct	high	1364	0.999	GCA_005502385.1_01116
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	165087	167024	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	7434	9371	GCA_005502385_1_21_153	GCA_005502385_1_21_153	-	261151	.	PDB:4OLS_C	Endolysin	MAILPSSGKPTAKQVVAWAKWLADNKLGVDVDKRLGFQCWDLPNYIFDRYWGFRTYGNADAMARRDQYPNSTWKIYANTPSFVPKPGDVVCWTYGAYGHTAIVVGPSDTNTFTSIDQNWYGANHWYGSKAAYVKHSYSGMGGNLYFIRPPYKEEPKTETPPKDTTPSQDKGNTSSDKPTSETKKEPLKEQKVITVTAEDDEKVDYPRFIPHRIANGEVRGHKPKGLAVKNAGTMCSVQQMYYDRNKYISNSEYPHFYIDRHHIWQPRYTDVKVPSEPDYIVIEVCGDYSDTKTDFLLNELHAIIFGVGELKGYNIPLKRSSLKVSDDLWRTVMEHGNFDPLIDGKPSSKVLDKVEQSLLNLYTNKDKLLKNIKSGKTTKIDIKVDKKQKSSSSTSSSSTAKPSTSTSTSTTSKVSSKPKVIVVYSNYTFTQAVNIQMTKWPQINYGSGWYNAGRADTLKAMNSLEIWNSSSQKYQMLNLGKYQGISVSKLNSILKGKGTLSGQGKAVSDGCKKYNVNEIYLISHAFLESGYGRSNFASGVYGAYNYFGIGAYDNNPNYAMTFAKNEGWTTPAKAIIGGAKFVRQGYIDRGQQTLYRMRWNPQSPGNHQYATDVRWAQHQANTIKSLYDEIGLKGEHFIRDRYKRT*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0012	cloud	direct	high	1937	0.999	GCA_005502385.1_01117
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	167078	167464	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	9425	9811	GCA_005502385_1_21_154	GCA_005502385_1_21_154	-	261151	.	.	hypothetical protein	MSEENDYVKRHEFERSNGKIYERINQTDKQIIALNGKIDTQNAIQEKNYQSQERSEKHLEKISGEITSFKDGFNEVKNQVDKHSDELDKINATVSDKQKWNVGIATAIISGIFALLGTAMQLAPLIFK*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0013	cloud	direct	high	386	0.997	GCA_005502385.1_01118
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	167448	167867	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	9795	10214	GCA_005502385_1_21_155	GCA_005502385_1_21_155	-	261151	.	.	hypothetical protein	MKKNTILYSLAVVLLSGIGLLEFERGFFWTKEQNDILDDSDFYLALHHIMPIWVWGVLGMICSIFIIIAPFFLPKQKLNHIFDYLILIGGCGNAIFYFFMTSASVYNAINWLSPLQFATITMINVGLAFFGGAEIVRRK*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0014	cloud	direct	high	419	0.998	GCA_005502385.1_01119
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	167888	169084	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	10235	11431	GCA_005502385_1_21_156	GCA_005502385_1_21_156	-	261151	.	PDB:4DIV_C	Distal-Tail-protein	MDGLKKEAKITVVDEPRLNPITDENIGFYNMDINTAVLTFQVRKQDYPLEISKVNTDIYAYFVSDNGSSTGRVQVDYVNPMQGIIQLTLDNDFLKAATDTYVTGQIYIKAVGRKDTVVLNEFRFYVKDALINQIDADIKISYIREIDDLIDNFKKKIENVSQNFSDIETAQADFTAFVNAQKNTFIKQVNDMKNEMNAFANNTQKDLIDRLNSIDDKMLQTLSELENGTENFVTEDELNTLLANYPTNEQLTTQLNGKANVGDVTGNQSVELPDFDVIIKEKVDEALANATLQRFTFTDNNGYIPRIDNPDLYTMSGIDTSGFYYAYNPVNSPDPNNQSGYLLVMARSSSYKKVLFFPFNRHVFYSRNKMGDTTGWGNWYDATNNINVGEMIADVDEI*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0015	cloud	direct	high	1196	0.999	GCA_005502385.1_01120
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	169097	170971	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	11444	13318	GCA_005502385_1_21_157	GCA_005502385_1_21_157	-	261151	.	PDB:5EFV_A	Minor-structural-protein	MRKTIYTDLDAIFGARFVRENELNFIATRDMLTNIEKLLDKHSRNETKAHTAEQIKYTLPTGPSTTVDKELRYQNERVRNLVLGNLGNGQQEVRDSRVSMDGQSHSLLSERLKHDFSYIEEETDKLMNVTDDPAYLFNPPYMKSAERGVNETPLSNDPTENLKAFYDVFVDNKYCFKKYIGKDQSGKYNVYSYTFEPEHYSKTVLVTCCIHGNEYSAFYAMSRFMNLVVNKWEKYPQLAYLRKNVRIVMVPIVNPWGFANQERENVNNVDLNRNFDYYWENGSGKSPSGKNYKGSKVFSERESRNMKTLVESLDEITAHMDCHNIVSQVSDYCLFYPRFANQPNNEMTQLLMELSNYGDYVTWGSSTLASFSNWVGITKGITSFLPEVYEGRAGKPRGAEEMWRSVYYLGNILLRLSSLYNGQNGRTANEPIVKSFVYSSRYNNSGVKPFSLIAKDGYQRMLMTQQRFKVTANGFVELNGSITVQLSKDTVFGVNPGVAQNYNPFSGNGKTRKRQLYKIEHKLPAGVHTIPLHAVAPVQFSTTTPDDVKRTNEVMAVVDVMRKEGYAKVLNMVLNVKFTPSHSHNAVQMFTSTGYGNQKEQTFKQIYPNKPAPFDVRNKIITKK*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0016	cloud	direct	high	1874	0.999	GCA_005502385.1_01121
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	170982	172232	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	13329	14579	GCA_005502385_1_21_158	GCA_005502385_1_21_158	-	261151	.	PDB:3GS9_A	tail-protein	MPILVTPIRGRSIPLYVSTTETSKLGSDIVLQFEIVEDEFNYQIVRGLQKRWTISRVQGPKDKREYVVFIIDRQTHGKKQRVSVSCRYKPLDIIKHTRIYDTIDGSFTANNFLKRIFDGTGLKYKIDGSLGSSQFENAGEGESLEDLIKKFCSHFDVEFDIEFNNKKGTYTFVFTPFLNKNASYHIDDEINANNMKVEEDSSELYTYAVGYGDYDDEGGSTAAGFVMKFEHPSIKDYGRYDAPPIKDGRIKDEEVMHQKLQSLIESSVKTSISLDFIALNEHYPNAVPKVADIVKINHSILGINEFVRIVDVKTVRDKDNIIVKQDVTLGDFKRVDRYKKRVSEAAAAVGKLGGQNSFVHTYKVTTAKTNAAIKTTQRQQEDSTTKNIKATKEDGTVVNLSSADIVIDANGNLKLK*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0017	cloud	direct	high	1250	0.999	GCA_005502385.1_01122
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	172242	173198	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	14589	15545	GCA_005502385_1_21_159	GCA_005502385_1_21_159	-	261151	.	PDB:2X8K_A	Distal-Tail-Protein	MDIEIKKKDGQRYTLNDFGFKVTNVTVESIEKETDYEKKENTSGRILLSSQYRKRTITVDCYVVSTKLNDNSRLRDEFYSLTNSNEPIHIRELRRTVPLNYRFVQPTEDDYQEIDEYNVLVFNHEPFNDNHYVNGRQYQVMCSDVVVPEENGRKINFSIKFETVELPFAESIGTSLELEKRPDRELWSNDMLIPFDEEDARRRYSFTNIYNNSVYYHGNVPNDQFNLFKKVTVVLGKDVKATEIFQFTLGNSDVMTIEGANLKKGDKIVYDGVQTFRNGVPINDLASNAQPKFYPGWNNFEFNQQVKSVTFDLKFYYL*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0018	cloud	direct	high	956	0.999	GCA_005502385.1_01123
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	173211	177005	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	15558	19352	GCA_005502385_1_21_160	GCA_005502385_1_21_160	-	261151	.	Uniprot:A0A0K2G452_BACCS	tail-tape-measure-protein-	MAEANYSIKAQIEANTRKFKSAIQSAKKVAQSFKKTQESIKDTKLDGDSSGVMKAVKAARDAVKGFDNTHADAELDADISDVRDKVAQAKTLVEKFDAYRGDAELDADVSKATANIKKVQKYLDMYENSDAEADADVNIRKAITHISELQHNLDGIDGSKYSAVLDADATRAREHIKMAKKQLNDFAHQKAKANLEVDSAGAIAHIKAFKAMLRSIPNRHRTRLEIDGGNSLGFFKSLGAAIDESTRTWDKLATKIRTIGTVLGNMIKGALISNITLLVPAIASVVPALMAVLNALGVVAGGALGLAGAFGVATAGVVGFGAMGISALTMLADGTLEATRETERYEAALDSLKSAWVGLIQQNQSQIFNTLANSIDTAKVALAGLTPFINGVSKGMEQASAKMLDWAKNSQVAQKFFEMMGTTGVRIFNNMLEAAGSFGSGLISVLTQIAPLAEWVSQGFKKMGQSFNEWAQSVEGQNAIKSFIEYTKQNLPLIGQIFGSTFRGIFNLMKAFAPNTHLVLQGLADMAKQFEQWSATIAESDGFKKFIEYVQENGPKLIQLLGNIINIIINVATAMAPFAAAVLDVAIAMTDFIESLTAAHPAIGIMLGLIATLAGIFMTLGPPILGAIDFIGTFVKAITGAGTVIEGFSVIGGIVADAMELVGAALVGIEGPALAVVAVVAAVIAIFVGLWNSSEVVRDAVTGAWKAISGAVGDAVKAVINFFKDLIGQMDYVKGAVESLGAMWDGFVTIVEGAIKLLSPLFESAFNAIVNTVKIAWEVIKAIITVAMHVIVGTITVLLQILTGDWQGAWQTLQEVGQAIWNAIVQAAVNIFNILKDVLSQSWQATVDMFSTIFGPLAEIASTIWNAIVQAILTVVVQLGVFLMTTWTNIVTVAQTMWTMLIAIAQTVWTAIVTAITTIVTTLGTILSTIWTGIVTVATTIWTTLVTVAQTIWTMLVTVITTVVQAILNVVTTVWTTLLSVTSSIMSAISSVISSIWSSIVSIISSIVSSIVSFVSSGWSTLMSVTSSIMSSISSVISSIWSSIVSFISSAVSRAVSFVTSGFHNMLSAIISAMSGMVSAVISGMSNVVNSVRNGVSNAVNAARSFIGHMRQVGVDLIQGMINGVVSMARNLVNAARNVVMGAVNAAKSALHIGSPSKLFKQFGVWTMEGLGIGINKEGKNVISGMGSMANSITEAFNSNLAVPDITSNMKKVNANMNAQVQHTHTVQTNPSQRVVRIEMDVNNEALAAIVNGQTANDDTVFSF*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0019	cloud	direct	high	3794	1.0	GCA_005502385.1_01124
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	177010	177366	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	19357	19713	GCA_005502385_1_21_161	GCA_005502385_1_21_161	-	261151	.	PFAM:PF12363.7	tail-assembly-chaperone	MSKLKIYDLKRIEMMTLTEFNYRMWAYEYEQLDKDMEMYKLAFAIRDAQAERKKRGGKKGESEYVFKSANDIIDYEENIKRLNKGEAIKYGSDSKKEVNAPSDLLKLIASHNNSLRKE*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0020	cloud	direct	high	356	0.997	GCA_005502385.1_01125
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	177408	177776	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	19755	20123	GCA_005502385_1_21_162	GCA_005502385_1_21_162	-	261151	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MEITYNGRKLELSFGFKALNAIDRKLGVEAEQMKFGMGLQSTIPFVLQGNPITLGEYIIAMTSHHKKHPTENDILDVLDDIAENQGLVEFAEELVETLGKRPSTQSLVPDRFKPAKKDNKKK*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0021	cloud	direct	high	368	0.997	GCA_005502385.1_01126
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	177842	178387	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	20189	20734	GCA_005502385_1_21_163	GCA_005502385_1_21_163	-	261151	.	PDB:5A21_H	major-tail-protein	MPTKQGTDELVLIRKVGDKKDANKVMLVTELERETEKDRDTEATFDGSVNSGGTLESTVTINCYMDQKDTLCDEIEDATEDDTPYELWVINKRVRNEDGKYKAEYRQGYWNSITRTNEADGIAEFETEFGVYLKKVRGYATLPPAIEENKAAYGFHDTVASDPADDGLADSIPQPTEVETV*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0022	cloud	direct	high	545	0.998	GCA_005502385.1_01127
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	178433	178822	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	20780	21169	GCA_005502385_1_21_164	GCA_005502385_1_21_164	-	261151	.	PDB:4ACV_B	Antigen-protein	MKQSVNLQLFNYLYTRFEELDVPIIRTSELNQELPYPFIAIQSIRDDIHRLTFDTYSGSPTAIIHIWCTEEDKGKNDELYIQVQSILLDEIQLNGYTLTLPQISVNESTEQETNQTLSHTTISVEYASH*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0023	cloud	direct	high	389	0.997	GCA_005502385.1_01128
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	178833	179189	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	21180	21536	GCA_005502385_1_21_165	GCA_005502385_1_21_165	-	261151	.	PFAM:PF04883.11	type-I-neck-protein	MRVGGGDLDDLIREFQNMHDNIDDDVDEVLHNNAIDFASDTILEAKEKMNAGYWTGNLARMVEDTKVGHLNYVITSKAGYSGFLEYGTRKMRPRTFMFPVYEKYTKQVRADLERLIED*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0024	cloud	direct	high	356	0.997	GCA_005502385.1_01129
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	179189	179491	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	21536	21838	GCA_005502385_1_21_166	GCA_005502385_1_21_166	-	261151	.	PDB:5A21_F	head-closure-knob	MRYNKRVVFAKETKGKYNPKTSKTETYEKRYDAIPCNISPLSPQKTVVQYGDINKDINIIRLNGRFEPAVTHAYINDTKYQITKRIDYEHDTVFYIEEVK*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0025	cloud	direct	high	302	0.997	GCA_005502385.1_01130
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	179488	179817	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	21835	22164	GCA_005502385_1_21_167	GCA_005502385_1_21_167	-	261151	.	PFAM:PF05135.12	head-tail-adaptor	MATLENVKLLLSINDNVQDELLKRIIDNTEKRLISLLPVDIEEVPDRLEYVVEEVAVKRFNRVGAEGMTQESVDGRSNTFQANDFDEYMDVIDQYTPRTTGKRGTGIFY*	phrogs_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0026	cloud	direct	high	329	0.997	GCA_005502385.1_01131
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	179819	180088	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	22166	22435	GCA_005502385_1_21_168	GCA_005502385_1_21_168	-	261151	.	PFAM:PF08198.10	Arc-like-repressor	MTYSYEVVRPFVDAEDNKPYEVGDIYPTDITDERITQLLHADNKYNKQYIKLVVDSKNTKAELIEIARKHGIDVSENDTKADILDTLEG*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0027	cloud	direct	high	269	0.996	GCA_005502385.1_01132
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	180111	181022	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	22458	23369	GCA_005502385_1_21_169	GCA_005502385_1_21_169	-	261151	.	PDB:6B23_B	Major-Capsid-Protein	MADVKRQDFNPDNVMMHEMKDGTLLNDFNEPIMLEVLQNSKVMQLGRVQDMGGKSEKTFTYWADKPGAYWVGEGRKIQTSKPTVVQATMRSHKLGVIVLATREYLNYTYSQFFEKMKPQIAEAFYNKIDEACVLNVDNPFTQSIEQSVATADNVVNGPITLENVLALEDELLEHDVEANAFISKNQNKTALRNVIDEKTQERYYDKSNSTLDGIPVVDLKSNEIKKGDLYAGDFNKMFYGVPYNMSYKISEEGQISTLTNADGTPVNLFEQEMIALRVTMDFSFHVADDNAFAKLTEGVAETV*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0028	cloud	direct	high	911	0.999	GCA_005502385.1_01133
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	181038	181649	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	23385	23996	GCA_005502385_1_21_170	GCA_005502385_1_21_170	-	261151	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEIKRLKLNLQHFAEGDDIKKQEPDDKKDDKQKSGDKEVFEITQNELDSQKHKAVNKALANQEKKFEQRLKEAVENARSEGESYAKLTQKEKEEKALSEREKAIAEREKAQTLRELESDVIADLKEQKLPTSFAKALIKIEDNEEIKSTINEIKSDFDNAVQEQVKEATRQSTPSNQSSSFGNRQASGKSFEQLANENRIIK*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0029	cloud	direct	high	611	0.998	GCA_005502385.1_01134
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	181819	181968	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	24166	24315	GCA_005502385_1_21_171	GCA_005502385_1_21_171	-	261151	.	.	hypothetical protein	MNEFQTALIDVLKDIHHELKRLNDTNPSNQAQAKPKKDKKKSFEPKNFI*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0030	cloud	direct	high	149	0.993	GCA_005502385.1_01135
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	181961	182113	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	24308	24460	GCA_005502385_1_21_172	GCA_005502385_1_21_172	-	261151	.	.	hypothetical protein	MDYSKRLDDVMDEYLQVFAKDPNDILTDDMTDYDKIKKLEQAIQSGASDE*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0031	cloud	direct	high	152	0.993	GCA_005502385.1_01136
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	182124	182297	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	24471	24644	GCA_005502385_1_21_173	GCA_005502385_1_21_173	-	261151	.	.	hypothetical protein	MTEQEKYLKEIATELKLIREQLEKSNNTIEIRSEIDTDSLQEIVNRENLKGSRTFNF*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0032	cloud	direct	high	173	0.994	GCA_005502385.1_01137
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	182302	183294	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	24649	25641	GCA_005502385_1_21_174	GCA_005502385_1_21_174	-	261151	.	PFAM:PF06152.10	minor-capsid-protein	MSYWEDRAKEIIDEESKSDYEIAQEIQRIVDEMNEDIEDEINRFYARYAIKEGISFIEAKKKIDAVDVQMFQQKAKQYVENKDFSDKANAELRAYNTKMYVSREKLLQAQLGLIVTYAYAQIEQSMYNYMESAYYRALEQQAGILGETLQVSINDVKTIIFTPFEGHKWSTRLWSDMDVVRRHVQKTTRHVLLRGRHPYEFVKDLRKDTGATTYNMKRLLLTETARVQMEASKRHMLDQHGEDAEYEYVTAQEVLHQRDKDGNIKKTIKVCKVCQALNEKVFKVKDMKPGINAAPMHPNCRCTVIPHKKDWRDKFFEERKGKYNLSKFTE*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0033	cloud	direct	high	992	0.999	GCA_005502385.1_01138
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	183301	184794	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	25648	27141	GCA_005502385_1_21_175	GCA_005502385_1_21_175	-	261151	.	PDB:5A20_A	Portal-Protein	MLKVNEFERDAEYRQHRDKIYRRDAVETYRYDGTLSEILGDYDFISECIKHHLEAQVPRLQMLDDYYQGLNYNIMRNRRRRERHLADNRAAHDFASYIADFINGYCFGHAIQVQTEDEDTQEKINGLHNLNDIDTHNRSIGLDLSIFGRAYEYIIRNQDDEVRLYKSDPRHTFVIYDNTIEQNSLIAVRYWQTSTREYDDTDIYNVDIITPNATNFFYANKSTNLSLQERRPPEPHSFGKVTITEFSNNEKRRGDFEKVIPLIDLYDNAQSDTANYMSDLNDAMLFIKGNIDFQGMSVEEQKKANVIHLSPEVYRDNEEKATEGNVDAKYIYKEYDVNGVEAYKDRISRNIHMFTNTPDMTDENFGGNQSGEAMKYKLFGLEQRTAIKEGLFRKGLRRRYKLIGQIMSINRELNKDAIQDLTFTFTRNIPKSIKDEMDMYLQAGGQVSQQTLMSIVSFIDNPQQEMERIENEEDAQLQKSDERMYRQGIDNQTDIKE*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0034	cloud	direct	high	1493	0.999	GCA_005502385.1_01139
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	184808	186088	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	27155	28435	GCA_005502385_1_21_176	GCA_005502385_1_21_176	-	261151	.	CDD:TIGR01547	phage-terminase,-large-subunit,-PBSX-family	MTNLKLNFNHPEKVFNKNIFEILTNYENFTEVHYGGGSSGKSHGVIQKVVLKALMKWPIPRRMLWLRKVQSTIKDSLFEDVKSCLIDYGIWDMCQWNKTDNKVVLPNGATFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLREKKHMNKQIFLMFNPVSKLNWVYKYFFEHGEDMEGVMIRQSSYKDNKFLDKITRENLELLAKRNPAYYKIYALGQFATLDKLVFPKYEKRLLNKDELRHLPSYFGLDFGYVNDPSAFVHVKIDKENKKLYIIEEYVKTGMLNDEIAKTIKQLGYVKEEITADSSEQKSIQEIKKLGIERIKPTRKGKGSVVQGLQFLMQFDIIIDERCFKTIEEFDNYTWQKDKNTDEYLNEPVDTYNHCIDALRYSVERFYKPQTNKRSNIRKSISAIKSMGL*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0035	cloud	direct	high	1280	0.999	GCA_005502385.1_01140
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	186075	186533	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	28422	28880	GCA_005502385_1_21_177	GCA_005502385_1_21_177	-	261151	.	PFAM:PF03592.15	Terminase-small-subunit	MIYEMNGLNIKQQRFADEYIKSGNATDAYIKAGYSKNKANTNATKLLQNTTIKNYINERIKEVQEESLMSITEALALSASIARGEPQKAYTKRYDHLEGEVDKEVTYTITPNVEERQRSLDHILKVHGAYIDKKEITQKNIEINIGDYNDEP*	hallmark_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0036	cloud	direct	high	458	0.998	GCA_005502385.1_01141
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	186553	186933	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	28900	29280	GCA_005502385_1_21_178	GCA_005502385_1_21_178	-	261151	.	PFAM:PF05551.10	homing-endonuclease	MEIKKRKNLKIHRLVALNFIDNPLSKPFVNHIDGDKLNNDIRNLEWCTPLENTTHAIENGLFVPKVHCVKEGKTIGMFDKDDNLLKTFSRSKEAAEYVGTDHKTIIKVCNGYKSYKTAKGYKWKYI*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0037	cloud	direct	high	380	0.997	GCA_005502385.1_01142
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	186896	187126	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	29243	29473	GCA_005502385_1_21_179	GCA_005502385_1_21_179	-	261151	.	pfam07463	NUMOD4 motif. NUMOD4 is a putative DNA-binding motif found in homing endonucleases and related proteins.	MNYSKINEIWKPIKGYEDFYEISSFGRIRSLDRLTNNSYGTFIRKGKLLKTSIDRNGYKYVLLSDGNKKKKESKNS*	mmseqs_cdd	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0038	cloud	direct	high	230	0.996	GCA_005502385.1_01143
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	187382	187783	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	29729	30130	GCA_005502385_1_21_180	GCA_005502385_1_21_180	-	261151	.	.	hypothetical protein	MYSKEAILNMIDNYQMTCKYLITVIPDCDSNSIAQYGIQATLPKPQGQNSSKVEDTVIRRERMSKRHAQMLAEVEFINQSQQKLGHVDFIFLDHLKKAKRRDEIIKVMPNSRLNRNNFLARKDELAEKIYLLQ*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0039	cloud	direct	high	401	0.998	GCA_005502385.1_01144
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	187796	187939	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	30143	30286	GCA_005502385_1_21_181	GCA_005502385_1_21_181	-	261151	.	.	hypothetical protein	MWLIILCVFLTILTFGFAIENAKLRGNMEGKEYQIKLLEHRLSKYED*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0040	cloud	direct	high	143	0.993	GCA_005502385.1_01145
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	188013	188180	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	30360	30527	GCA_005502385_1_21_182	GCA_005502385_1_21_182	-	261151	.	PFAM:PF06116.11	Transcriptional-activator-RinB	MVKKLVKLITLASISVLGIYLKRYMIVILESEDDIDAPADYALNGDQSDLNKVIP*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0041	cloud	direct	high	167	0.994	GCA_005502385.1_01146
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	188186	188383	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	30533	30730	GCA_005502385_1_21_183	GCA_005502385_1_21_183	-	261151	.	.	hypothetical protein	MTDLFIIVFALTLLVTIIGMIVKMYLENTKQERQYKKIAKKTRNKRKEFEERKRKQFENNKLDKE*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0042	cloud	direct	high	197	0.995	GCA_005502385.1_01147
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	188389	188658	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	30736	31005	GCA_005502385_1_21_184	GCA_005502385_1_21_184	-	261151	.	.	hypothetical protein	MKLNLGLTILIWIVVTYLVLISLAYVVAFVGTIVLAIKDKKDRKEFREKRNREWIEKEKEFENRMKERREEFYKRNKHIIKDLDKHFKE*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0043	cloud	direct	high	269	0.996	GCA_005502385.1_01148
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	188671	188844	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	31018	31191	GCA_005502385_1_21_185	GCA_005502385_1_21_185	-	261151	.	.	hypothetical protein	MRERTKIIFRGWNEEIFILQGKNLDITGLNQISNEIKRLYENYKVVVIPIEVDFEFK*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0044	cloud	direct	high	173	0.994	GCA_005502385.1_01149
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	188884	189429	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	31231	31776	GCA_005502385_1_21_186	GCA_005502385_1_21_186	-	261151	.	cd11527	Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in dimeric 2-Deoxyuridine 5'-triphosphate nucleotidohydrolase and similar proteins. dUTPase (dUTP pyrophosphatase; EC 3.6.1.23) catalyzes the hydrolysis of dUTP to dUMP and pyrophosphate. It acts to ensure chromosomal integrity by reducing the effective ratio of dUTP/dTTP. Members in this family are dimeric dUTPases, such as those from Leishmania major, Trypanosoma cruzi, and Campylobacter jejuni, which differ from the monomeric and trimeric forms and adopt an all-alpha topology. A central four-helix bundle, consisting of two alpha-helices from the rigid domain and two helices from the mobile domain and connecting loops, form the active site in dimeric dUTPase-like proteins, requiring the presence of metal ion cofactors to hydrolyze both dUTP and dUDP.	MNNTLTVEQLKELLQIQKEFDNRIPTLNLQDSKIAYVVEFFEWFNTLETFKNWKKKPGKPLDVQLDELADMLAFGLSITHQLNLDVTEETVENLNNIMQAAKDIDKHLDDIDILSEVYTNLGKNIFNRDSTNSDALTFLTYPFAFSVEYYSLDQLIDAYNKKMEVNHARQDGTADKDKGYV*	mmseqs_cdd	nonviral_gene	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0045	cloud	direct	high	545	0.998	GCA_005502385.1_01150
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	189430	189675	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	31777	32022	GCA_005502385_1_21_187	GCA_005502385_1_21_187	-	261151	.	.	hypothetical protein	MSELDIVSDYFLDDTFEVTKESASNLVSELQSHKFTIESQQRKLNKLGLIKREHAKWLHGKITVVQFAYNVEEILNNLEDE*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0046	cloud	direct	high	245	0.996	GCA_005502385.1_01151
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	189668	190078	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	32015	32425	GCA_005502385_1_21_188	GCA_005502385_1_21_188	-	261151	.	PFAM:PF06260.11	acetyltransferase	MAEPTLDELVAFMKKHGVEKVDSITDEKSAIKHFRAASRVYKEERDAYKKQRDELINDMAEVKRKAEAWDKLKEEKTKEYVLRHNQLKQTSILDPRELSIREMVWELKYDLQRMDELDGTNDFKNLLSDWERGSDE*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0047	cloud	direct	high	410	0.998	GCA_005502385.1_01152
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	190081	190425	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	32428	32772	GCA_005502385_1_21_189	GCA_005502385_1_21_189	-	261151	.	PDB:1RKN_A	Thermonuclease	MDINNLYTYKATCTNVVDGDTLDILLDCGFDTYAKRRVRLLGVDTPERGQDKFKEATAFTRECVEHKDIYVQTYKSDVFGRYLANVWYEDGTRSLNDDLRDAGLLKENSKWNEG*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0048	shell	direct	high	344	0.997	GCA_005502385.1_01153
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	190415	190804	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	32762	33151	GCA_005502385_1_21_190	GCA_005502385_1_21_190	-	261151	.	TIGR01671	phage uncharacterized protein TIGR01671. This model represents an uncharacterized, well-conserved family of proteins found in bacteriophage and prophage regions of Gram-positive bacteria. [Mobile and extrachromosomal element functions, Prophage functions, Hypothetical proteins, Conserved]	MIPKFRAWDKKDKAIRDVTHIIYMYESVVLNVERTFYERTFCEIELMQLTGLKDKNGTEIYEGDIVKYNSVPNPFLSDNYFKIIQARSGEWRIDNYIEGRVLIFNDHQVEVVGNIFENKELLEDKVNGH*	mmseqs_cdd	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0049	cloud	direct	high	389	0.997	GCA_005502385.1_01154
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	190801	190986	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	33148	33333	GCA_005502385_1_21_191	GCA_005502385_1_21_191	-	261151	.	.	hypothetical protein	MILSNTINQRYRYATQGKTPTQIQHELRELGVKGFVVKVAESRVTMKVSECDIKRNRECLR*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0050	cloud	direct	high	185	0.995	GCA_005502385.1_01155
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	191041	191421	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	33388	33768	GCA_005502385_1_21_192	GCA_005502385_1_21_192	-	261151	.	PDB:3DTE_A	IrrE-protein	MMLSSAMQKLIKETVDEIYVAFDIPTHTPIDLDEFLNILDIQLREDSELIYKGKIEKEYNGKTIITIKRHHNEEKRRFAIAHELGHYFLHFNDEEKEFKDSVFYRNLEYNNEEIEANQFALNLLNK*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0051	cloud	direct	high	380	0.997	GCA_005502385.1_01156
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	191418	192098	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	33765	34445	GCA_005502385_1_21_193	GCA_005502385_1_21_193	-	261151	.	PFAM:PF05551.10	HNH-endonuclease	MVYMYEPFTHTVTETDLSHLHNVTGIPHNTLWYQSKNGIYNDKLKCFFSDTLPRFKKKQEFNEKVVEEDEIWKYSDKYDLYVSNLGRMKTPNGKYKFGNGCKGVITVIYKNSKYRAADIVYETFIKNLKTGHHAYPKDSQYNNIKADNLFSTTFKKYRLYRRNTGRSKPLYLVDSNNEIVEEFASTVEAQSVLFIDRRHVARRCNSRCVNDGLMYVWADEYEELNA*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0052	shell	direct	high	680	0.999	GCA_005502385.1_01157
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	192101	192565	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	34448	34912	GCA_005502385_1_21_194	GCA_005502385_1_21_194	-	261151	.	PDB:1G60_B	Adenine-specific-DNA-methyltransferase	MTTKILDACCGSKMFWFDKENQEVTFMDNRELDTTLSDGRKLIVTPDILADFRDMPFEDNSFYLVVFDPPHLKTGGDKSWLIQKYGRLNKNWPEDLKQGFNECMRVLKPNGTLIFKWNEEQIKLSEVLKCFSQQPLFGNKRAKTHWLVFMKLEG*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0053	cloud	direct	high	464	0.998	GCA_005502385.1_01158
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	192568	193017	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	34915	35364	GCA_005502385_1_21_195	GCA_005502385_1_21_195	-	261151	.	PFAM:PF11753.7	nucelotide-kinase	MRISDLKRNDVIRIFKSEKSISSLAIVEKTEGINEFNGIYFWAEVETEDGRTILIDDSWDFEKANEPFTRKVDMQEEQDMVHEPPHYQFGKFSARVIIELVGKTYKSASVFYHVGNALKYLMRAPRKNGLQDLKKAKQSVEFAIENWEG*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0054	cloud	direct	high	449	0.998	GCA_005502385.1_01159
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	193014	193217	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	35361	35564	GCA_005502385_1_21_196	GCA_005502385_1_21_196	-	261151	.	.	hypothetical protein	MYDRYKNIPDVYIGGKKYRLCDVYKYFDVGDATVRKRYYKQKLRGWELVYGKGKVPVEIEQGKGIGR*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0055	shell	direct	high	203	0.995	GCA_005502385.1_01160
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	193222	193395	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	35569	35742	GCA_005502385_1_21_197	GCA_005502385_1_21_197	-	261151	.	.	hypothetical protein	MATVKAEVVIRGTIELPAYEESDKEMEYTIEQAKKSPEEIFDDIDIKDVDFRYEHWK*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0056	cloud	direct	high	173	0.994	GCA_005502385.1_01161
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	193395	193754	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	35742	36101	GCA_005502385_1_21_198	GCA_005502385_1_21_198	-	261151	.	.	hypothetical protein	MDNIWKDFAKEYMPEDKFERVCEEIKNSKNVVDVNHEFSLNSFLSVIYSKEDRKVGMRITSGYQNAFDVCYKNEKPIINEKDFGKIDLIFDNKLSIENFIETAQLLLKAYDEITKESDE*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0057	cloud	direct	high	359	0.997	GCA_005502385.1_01162
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	193754	194128	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	36101	36475	GCA_005502385_1_21_199	GCA_005502385_1_21_199	-	261151	.	PFAM:PF14606.5	virion-structural-protein	MVKIKVEKKMNLLELIDWAWKNGVKEKAFYSNIDGGSVYFDMVQTVSVEHSIVRTETFNVEVEEEITEDTKIPEMLEIFQDNDGTQWFGNSIEQVKDDFSREFWLKDGNTMTLIWKDGELVGDE*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0058	cloud	direct	high	374	0.997	GCA_005502385.1_01163
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	194115	194531	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	36462	36878	GCA_005502385_1_21_200	GCA_005502385_1_21_200	-	261151	.	PFAM:PF06356.10	Endonuclease	MSKYNAKKVEYKGVVFDSKVECDYYQYLERNLGDGYDHIELQPRYELIPKLDKQRKTEYIADFALFKDDVVVEVIDVKGMPTEVAKLKAKMFRHKYPKIKLTWICKAPKYTGLEWITYEELIKVRRKRKKEKMKNGKD*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0059	shell	direct	high	416	0.998	GCA_005502385.1_01164
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	194542	194784	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	36889	37131	GCA_005502385_1_21_201	GCA_005502385_1_21_201	-	261151	.	PF11673.8	Protein of unknown function (DUF3269)	MGLIENQPNAYDLFESDGWKLLRVLPRDDGTFYLTNLGGMADKYFKQYVTKEELAEMKRKHKLFKREELKHQTTIDDFLF*	hhsuite_tools	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0060	shell	direct	high	242	0.996	GCA_005502385.1_01165
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	194932	195702	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	37279	38049	GCA_005502385_1_21_202	GCA_005502385_1_21_202	-	261151	.	PDB:4M4W_K	Replicative-helicase	MQSLGSLARNIKPNRNIVEEEHNLKCERCGNIYDYYKFSNGQEFRHGCDCSMIQAGKEAEQQRKQKYLNRIFNQSNVNASLRDATVNSYTPQNEYQIQAKNTAIEYVKTFSLDEPKSLILQGSYGTGKSHLAYAIAKAIKQQGYSVAFMHIPMLMERIKATYNRNATETTDELVQLLSSIDLLVLDDVGVENTEHTLNKLFSIVDNRVGKNNIFTTNFSDKELNQNMNWQRINSRMKQNARTVRVLGDDFRGRDAW*	rep_hall_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0061	shell	direct	high	770	0.999	GCA_005502385.1_01166
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	195715	196428	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	38062	38775	GCA_005502385_1_21_203	GCA_005502385_1_21_203	-	261151	.	PFAM:PF06926.10	replisome-organiser-protein	MTEQPSYYSIITANVRYDNRLTDSEKLLFAEITSLSNKYGYCTATNSYFARLYEVVKETISRRISNLTKYGYLKIETVKDGKQIKQRKMYPLTQSSIPIDVKINTPIDNSVNTPIDANVKENNTSINNTSINNINRTDNSVTDVTRERFEEWWKLYDKKLDKKKAFSLFKSALKKHEFETIMNGTREYLKTITDKQYQKYPKTFLSQESYLNDFSEELQPSGMDQLNRMKYDESYWD*	rep_hall_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0062	cloud	direct	high	713	0.999	GCA_005502385.1_01167
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	196425	196631	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	38772	38978	GCA_005502385_1_21_204	GCA_005502385_1_21_204	-	261151	.	PFAM:PF10078.8	transcriptional-regulator	MTIGEKIKNHRKNLGESMAEFGQRFNAKSGVVSNWENNKQKPNNKRLKLIADEMGLTVTELLNGSDET*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0063	cloud	direct	high	206	0.995	GCA_005502385.1_01168
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	196609	197301	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	38956	39648	GCA_005502385_1_21_205	GCA_005502385_1_21_205	-	261151	.	PFAM:PF16784.4	Putative-HNHc-nuclease	MPKIKNYITQDDGTTTVVIEGVELDNKTSLLLDNGFDVEVDVIPVDPFRITNKQRKKIFALVKDIEVHTGMPMDYMRHMFIEYVRTYYGYDERISLSNCTRTQASQIIEVTIDWVFANGIILAHKTSNLLKGDKSLLYWATVNRNCVICGKSGADLAHHYAIGRGANRKKMQHYDYEVLALCREHHSEQHNIGVKSFDEKYILQDSWIKVDSRLNAMLKGEKTNDNRRKN*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0064	shell	direct	high	692	0.999	GCA_005502385.1_01169
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	197485	197904	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	39832	40251	GCA_005502385_1_21_206	GCA_005502385_1_21_206	-	261151	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MTNQTIITGNITNDLEVRQAGNSQVLKFGLGVRGNFKKDETNFIQVEAWGKPAEIISEYCQKGSKLLVIGELKQNRFQDKEGQNREKVYVNLDKFEFLDSKGSNQQNSQPQQQRGQAPAGNNPFANDNNANISDDDLPF*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0065	cloud	direct	high	419	0.998	GCA_005502385.1_01170
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	197918	198580	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	40265	40927	GCA_005502385_1_21_207	GCA_005502385_1_21_207	-	261151	.	pfam04404	ERF superfamily. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.	MTEKQQELNLFQKIADVKANIDGFTKDAKSYNYSYVSGSQVLHRIRNKMIENNLLLVPKTSEENYKQIDVTRFNKKAGREITTSEFIVEMNLTYVWINADKPEEQFEVTFYAVGQQDDVSKAHGTALTYAERYFLMKFFNIPTDEDDADAKEKQEKYSKPNVQKVGELKQDIFSFIDLMKERGREITEEQVKKELNITDYTKLSNGQIANAIQSLKAWSK*	mmseqs_cdd	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0066	shell	direct	high	662	0.998	GCA_005502385.1_01171
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	198573	198797	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	40920	41144	GCA_005502385_1_21_208	GCA_005502385_1_21_208	-	261151	.	pfam10656	Hypothetical protein of unknown function (DUF2483). This is a family of proteins found in bacteriophage particularly of the SA bacteriophages 11, Mu50B, family, homologous to phi-ETA orf16.	MKETVTYIIKRKDNDLYVTNMPSHNFPAIKYSTEFRDAKEFNGVDKSSIDMTEHKAIKHTHIEQDKYEEVELDD*	mmseqs_cdd	nonviral_gene	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0067	cloud	direct	high	224	0.996	GCA_005502385.1_01172
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	198757	199038	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	41104	41385	GCA_005502385_1_21_209	GCA_005502385_1_21_209	-	261151	.	.	hypothetical protein	MQQEYITIPFKEWKNLEKNSLDLFNLTRDLDFARQEIELLKSQREELKEDIRYWIRMYQSASTRADKNAQDIARCTEVHERERNSHLYNQTKR*	.	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0068	shell	direct	high	281	0.996	GCA_005502385.1_01173
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	199040	199807	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	41387	42154	GCA_005502385_1_21_210	GCA_005502385_1_21_210	-	261151	.	PDB:5HFJ_C	Adenine-specific-DNA-methyltransferase	MNKVKVNEIYETTNYDAFKLSKSNRNVAYRKELFEEAKKGFIAPIVVDKNMTVIDGQSRLFHAQKANVPIKYFIDTDISEKDIVRMNTTQKSWSTKDYIESYANEGNEHYEKLLKLVNLNIVGASALAAISMNITMGGSTNKIVKDGHYEYRNKKTMEFLEFYKELVSKTKIPKYNNLIVAIFKLYKIKKIDTSRLINKINQTNLNEHLGVRQNISKYIELLLESYNHRTRTLETTIDYYITRNGEVIINEEMED*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0069	cloud	direct	high	767	0.999	GCA_005502385.1_01174
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	199870	200058	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	42217	42405	GCA_005502385_1_21_211	GCA_005502385_1_21_211	-	261151	.	PF06900.11	Protein of unknown function (DUF1270)	MTNSDKAMYIAGTMFLTLATALFITGMFFMKALGTALLIAVATYVFFDSFYYEKKTDTHANE*	hhsuite_tools	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0070	cloud	direct	high	188	0.995	GCA_005502385.1_01175
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	200063	200377	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	42410	42724	GCA_005502385_1_21_212	GCA_005502385_1_21_212	-	261151	.	COG4707	Prophage pi2 protein 07 [Mobilome: prophages, transposons]. 	MTQTLNVTVPIPETHVVITKEEYQKLVNNSLDPIWSLEELKRKMKISSDETIKKKLLFRPKFMKIFKEKGIVHYPNEDYNRWHINARKMSDFIDEHFEEIHRKE*	mmseqs_cdd	nonviral_gene	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0071	cloud	direct	high	314	0.997	GCA_005502385.1_01176
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	200340	200942	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	42687	43289	GCA_005502385_1_21_213	GCA_005502385_1_21_213	-	261151	.	2OST_B	protein-DNA complex, restriction enzyme fold	MNDKVTAIRYLSIELGKSDKEIGDFLGVHRSNITHYRKNNNIPKPTTVGRQGELAVISRLRKLDFEVEDLNLIDKSSRYDLLVNEKLKIEVKSSKRGRDGRFRFSFANKRENQCKTSENVLRLKNGKTVKNYQKFADYFIFVGIDDDVYHFWIIPTNLIKVGQQNLTLNDTYRPIFKNNFDLLKEGMKNDANIECHSTNS*	hhsuite_tools	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0072	cloud	direct	high	602	0.998	GCA_005502385.1_01177
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	200987	201184	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	43334	43531	GCA_005502385_1_21_214	GCA_005502385_1_21_214	-	261151	.	PFAM:PF10078.8	transcriptional-regulator	MKLNLDRLAKTRKRRKKTQDEMATALGFQSRSAYSKRENGVVSLGADELAIIAELLDYDITYFFD*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0073	cloud	direct	high	197	0.995	GCA_005502385.1_01178
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	201405	201731	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	43752	44078	GCA_005502385_1_21_215	GCA_005502385_1_21_215	+	261151	.	PFAM:PF10078.8	transcriptional-regulator	MRNNDEIIELVTKLMDKNDLSTSELARRLNIAKSSVSRYLNKTSQFPLNKVNEFSRVLNVTPEYLLGVGEYENKNQDTMAAHLDYSDLTEDEQKEVEQFIQFIRNRKK*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0074	cloud	direct	high	326	0.997	GCA_005502385.1_01179
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	201744	202205	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	44091	44552	GCA_005502385_1_21_216	GCA_005502385_1_21_216	+	261151	.	PDB:3DTE_A	IrrE-protein	MGRYEDLLKKYDYISINETGSIPEFMSGFYMNGEIFINSNRPTTIKLETLAEELAHHEITYGNILDDKDIQNRKYELKARRLACEILIPLKELISAYLQNVHNLYELADYFEVSESFVLQTLNHYKQKFGHSTRCGKYVIQFEPLRVFEYKDI*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0075	cloud	direct	high	461	0.998	GCA_005502385.1_01180
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	202305	202946	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	44652	45293	GCA_005502385_1_21_217	GCA_005502385_1_21_217	+	261151	.	PFAM:PF07553.10	superinfection-exclusion	MGEKFNNEQEERQFRQFQEYQKQQEEEKKKKRKKSWLFGCGGCLVLLILIIVGISACTATITGGSDNSSDNKTHKMGEKVKNGDLEVTVNSVETKDSVGSQYAPTTPKGTFVVANVSIKNNGDKALTVDSNMFTLKNKDKSYDADGGASMSANQSDDGNIENSFFLEQVNPDSTTEGYVVFDVSDKVANTEDKKLEITSSLFSSKGVTFDLSE*	phrogs_hmm	hypothetical_protein	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0076	cloud	direct	high	641	0.998	GCA_005502385.1_01181
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	203004	204029	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	45351	46376	GCA_005502385_1_21_218	GCA_005502385_1_21_218	+	261151	.	PDB:1Z19_B	Integrase	MKTRCYDGKKWQYEFKYEGKRYRKKGFRTKREADAAGLERMSELKNGIDYQPNLTLSEYFKTWCETFKLSTVSPRTYKSYASAIKHISEHSIGKKPLKDISRYHYQNFINDFSKSHSKESIRKLNGYIRTSLDDAVYEGLITKNPTFKVNYKASNPNKSEDSKFINLEDYEKLKQYLKTKDNASSLVLYIMICTGCRVSGALNLKREYLNQVKNEIYIDEHKTDSSPRYVEVSKDDMKFIIHSVSKLPVTIDGSVFGNLTINAVNKRLKAYCNDLGIKEITSHALRHTHCSYLLAKGVSIYYISKRLGHKNISVTTDVYSHLLEEQYKEENQKAVEIINAM*	common_virus_hmm	common_virus	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0077	cloud	direct	high	1025	0.999	GCA_005502385.1_01182
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	CDS	204458	204970	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	46805	47317	GCA_005502385_1_21_219	GCA_005502385_1_21_219	-	261151	.	cd00841	Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins.  This domain family belongs to the metallophosphatase (MPP) superfamily.  MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases).  The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	MSKWLIVSDNHTESGILYQLYDYHKDADICLHLGDSEFKYNDTELSLYQRVKGNCDFYPEFPNEDIIEKNSVKALYTHGHLYGVNQTRMRLAEKAQSLGCQFAFYGHTHIAKYEKLGDVHIINPGSISQSRSNIEETYAELLIEDESKKATLNFRNRDHQVIQSIEFEIN*	mmseqs_cdd	nonviral_gene	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_CDS_0078	persistent	direct	high	512	0.998	GCA_005502385.1_01184
GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote	cenote	tRNA	204161	204234	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385_1_21	GCA_005502385_1_21@C13	46508	46581	tRNA-Arg	tRNA-Arg	-	261151	.	tRNAscan-SE score: 78.3	Arg	NA	tRNAscan-SE	.	C13	47317	157654	204971	GCA_005502385.1|SCOV01000002.1@region_157655_204971@tool_cenote_tRNA_0001	.	.	.	.	.	.