core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	genomad_gene	genomad_length	genomad_strand	genomad_gc_content	genomad_genetic_code	genomad_rbs_motif	genomad_marker	genomad_evalue	genomad_bitscore	genomad_uscg	genomad_plasmid_hallmark	genomad_virus_hallmark	genomad_taxid	genomad_taxname	genomad_annotation_conjscan	genomad_annotation_amr	genomad_annotation_accessions	genomad_annotation_description	genomad_element_name_std	genomad_element_name_orig	genomad_element_gene_wrt_to_contig	genomad_element_gene_wrt_to_element	genomad_element_gene_start	genomad_element_gene_end	genomad_protein_translation	genomad_phage_region_id	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	157309	157443	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_140	135	-1	0.319	11	GGAG/GAGG	GENOMAD.222333.PV	1.02e-16	73	0	0	0	1	NA	NA	NA	PF05480;K20337	Phenol-soluble modulin beta protein	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	140	1	1	135	MTKLAEAIANTVTAAQNQDWTKLGTSIVDIVSSGASVLGKVFGF	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0001	persistent	direct	high	135	1.0	GCA_005502385.1_01104
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	157486	157620	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_141	135	-1	0.326	11	GGA/GAG/AGG	GENOMAD.222333.PV	4.063e-18	77	0	0	0	1	NA	NA	NA	PF05480;K20337	Phenol-soluble modulin beta protein	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	141	2	178	312	MDKLFDAIKNTVDAGINQDWTKLGTSIVDIVSNGVSILGKYLGF	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0002	persistent	direct	high	135	1.0	GCA_005502385.1_01105
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	157655	157789	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_142	135	-1	0.326	11	GGAG/GAGG	GENOMAD.222333.PV	2.036e-17	75	0	0	0	1	NA	NA	NA	PF05480;K20337	Phenol-soluble modulin beta protein	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	142	3	347	481	MTKLVEAIKNTVDAAQSQDWTKLGTSIVDIVSSGVGILSKVFGF	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0003	persistent	direct	high	135	1.0	GCA_005502385.1_01106
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	157832	157966	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_143	135	-1	0.341	11	AGGAG	GENOMAD.222333.PV	1.815e-18	78	0	0	0	1	NA	NA	NA	PF05480;K20337	Phenol-soluble modulin beta protein	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	143	4	524	658	MDKLFDAIKNTVDAGINHDWTKLGTSIVDIVSNGVSILGKYLGF	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0004	persistent	direct	high	135	1.0	GCA_005502385.1_01107
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	158007	158141	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_144	135	-1	0.304	11	AGGAG	GENOMAD.222333.PV	4.063e-18	77	0	0	0	1	NA	NA	NA	PF05480;K20337	Phenol-soluble modulin beta protein	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	144	5	699	833	MEGLFNAIKDTVTAGINGDWTKLGTSIVGIVENGVGLVSKYLGF	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0005	persistent	direct	high	135	1.0	GCA_005502385.1_01108
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	158574	159329	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_145	756	1	0.296	11	GGAG/GAGG	GENOMAD.071501.VV	2.103e-42	158	0	0	0	1246	Caudoviricetes	NA	NA	PF08139;COG5567;TIGR02747;K19975	Predicted small periplasmic lipoprotein YifL (function unknown)	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	145	6	1266	2021	MKKYFILLFSSFLILSACDNDFSLTGDNKKEQNDTNNKKEKEDKHISKSDKNSIEHNDKTIQNQNTENTSNEQKSNEERDSKDTIEDVSSQNNNQIDFSNIKDRSTLESIIYGNYSEEQKIQAYNSAVANGIIPQGNVMEGPASVAYQSSLRVENGQEKSIYDRPNESDVSVDDENATPDPNAEINAAETEDEYYDALRKKYNGGLSSGELQTKHAIEQGYYEGDDAEEVYQNIKEQEADIAAGKWDKYNN	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0006	shell	direct	high	756	1.0	GCA_005502385.1_01109
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	159983	160516	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_146	534	-1	0.270	11	AGxAGG/AGGxGG	GENOMAD.213642.VP	1.317e-10	62	0	0	0	1246	Caudoviricetes	NA	NA	K07727	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	146	7	2675	3208	MRKQIEELLKSEVTGYRIAKKTGIGESVISNLRSGKRNLDNISLKNAELLAQFKNDWDLYTNAKQIEVDPESEIEFVESLYTNYSMINTNNENNGYFISFESINKVEVNDKELFEIEFKYADEIEIEEDYFKDEVERAIWDNEEVEDRIFFKKYEEALSYLKMRYDIFTLEEVIETK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0007	cloud	direct	high	534	1.0	GCA_005502385.1_01110
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	160694	162145	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_147	1452	-1	0.361	11	GGA/GAG/AGG	GENOMAD.134099.VP	3.955e-108	360	0	0	0	1246	Caudoviricetes	NA	NA	PF08460;PF12671;TIGR02219	Bacterial SH3 domain; Putative amidase domain	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	147	8	3386	4837	MLMTRKQAENWLDNSEGRQYNADGYYGFQCYDYSKMYFYVVTGEWIGGLKASNIPFDNKAKIEKYATIIKNYDSFLPQKGDIVCFPDKYGGGYGHTAVVTRATLTQFEVLEQNWFGNGWTDGVVKPGWGPETVSRRWHYYDNPMYFIRFNFPKNVNVAKKAKRKLTSKKASGEIKRKKIMIVAGHGYNDPGAVGNGTNERDFIRKNLTPKIADYLRKTGHEVALYGGSKQSQDMYQDTAYGVRVGNKRDYGMYWVNKQNYDLIVEFHLDAAGASASGGHVIISSAFSPDEIDKDLQEVIKNNLGQIRGITKRSDLLHANVSAEINMNYRLAELGFITNKEDMDWIKKNSDKYAKLIAGAIHGSPIGGVVASKKKSSSKKLNVPKTIPNGYKLNDKGVPYKKEKGRYTVTTIKGNNVRTTYSDKAKITGTLPNGEEIIYDGAFAVNGYRWITYLNDDLKRRYIATGEIDKNGKRISSYGKFSKV	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0008	cloud	direct	high	1452	1.0	GCA_005502385.1_01111
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	162156	162449	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_148	294	-1	0.344	11	AGGAG	GENOMAD.220567.VP	0.000184	41	0	0	1	1246	Caudoviricetes	NA	NA	PF04688;TIGR01592	holin, SPP1 family	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	148	9	4848	5141	MEVKVIVRYIVLIMAIVNQFLANRGLSPIPVDEETISTIVLAGIGLYTAWKDNPTSKEGQWANKKLKKYKAEKKYRQATGQAPTKEYIEPSDLDELG	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0009	cloud	direct	high	294	1.0	GCA_005502385.1_01112
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	162502	163122	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_149	621	-1	0.337	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	149	10	5194	5814	MTDLYSSMIELQGKENDWSIEMNTNKSNVLSFAPHGGGIEAGSSELALLISQKLDCNYFTFKGKLPSDNVKLHVTSTRYDNPELLNLMRNIDYSISVHGYADNEYARTLIGGSNEELKTLIKCNLINRGFDVQDAPTKLGGAKPNNITNKTKTGLGVQLELSTKQRKSFFSNNDFSKKVREDRYRWRAVMYEYAQAIEYAVKEYLA	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0010	cloud	direct	high	621	1.0	GCA_005502385.1_01113
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	163177	163320	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_150	144	-1	0.292	11	GGAG/GAGG	GENOMAD.042441.VV	4.68e-05	40	0	0	0	1246	Caudoviricetes	NA	NA	PF09693;TIGR01669	phage uncharacterized protein, XkdX family	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	150	11	5869	6012	MRNIGIRYYKMGLYNEEQFALFVKRGFVTEEEFKELTGQEYQNVVKE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0011	cloud	direct	high	144	1.0	GCA_005502385.1_01114
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	163313	163657	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_151	345	-1	0.330	11	AGGAG	GENOMAD.054112.VV	3.618e-44	156	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	151	12	6005	6349	MEIKQIYFYDGTPFLVMENKDGELEYPKEQWTDIAPPEGLYEPIHFDGEKWVGTPYEEWLEQQPKIEVEETPDDKDVLIADLTLQLMETQNTVVNLQNDMASLTLQVLESDINA	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0012	cloud	direct	high	345	1.0	GCA_005502385.1_01115
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	163671	165035	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_152	1365	-1	0.330	11	GGAG/GAGG	GENOMAD.026321.VV	2.666e-53	198	0	0	0	1246	Caudoviricetes	NA	NA	PF17182;COG2755	Lysophospholipase L1 or related esterase	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	152	13	6363	7727	METFKQGKVIARIDERGIDLGNINVNLYTMDNSTSALDIHIKKRNIFSEEKEFIPVNLNQTTFKPVLHLIAEDGSIFTNEELEVVKAEEGHVRYNVSDYVTRHVGRVQAKLFLIDEDSSNDSSHVADFYFKVNDSGLTKAIGKEIHVDMLDDIVERILLKDIERFRGPQGDKGDPFKYGDFTQEQLNSLKGDKGDPFTFEDFTQEQIQSLKGDKGDPFTYEDFTQEQLDKLKPELPNFSNWQKYKLTNDDGTNFYDANLQIDFNNNEQLTSLPIGTRYVVLTLNNPSGTNSNGWLTKYKRDGEAALIQYQPYNSTVIYQKRFYRSWSDWERVGSDVVDTGWLPLPLINGVSQAGSANQPKYRLVSINDTDLLFFKGAVKNISSRTMAFAKLPTNISQKISNYSEYSKVGINPYINTSVIYNITMTTSGKLEIIFDPNSTANANEPYYIDGIIPL	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0013	cloud	direct	high	1365	1.0	GCA_005502385.1_01116
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	165088	167025	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_153	1938	-1	0.362	11	AGGA	GENOMAD.166151.VP	3.352e-14	79	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	153	14	7780	9717	MAILPSSGKPTAKQVVAWAKWLADNKLGVDVDKRLGFQCWDLPNYIFDRYWGFRTYGNADAMARRDQYPNSTWKIYANTPSFVPKPGDVVCWTYGAYGHTAIVVGPSDTNTFTSIDQNWYGANHWYGSKAAYVKHSYSGMGGNLYFIRPPYKEEPKTETPPKDTTPSQDKGNTSSDKPTSETKKEPLKEQKVITVTAEDDEKVDYPRFIPHRIANGEVRGHKPKGLAVKNAGTMCSVQQMYYDRNKYISNSEYPHFYIDRHHIWQPRYTDVKVPSEPDYIVIEVCGDYSDTKTDFLLNELHAIIFGVGELKGYNIPLKRSSLKVSDDLWRTVMEHGNFDPLIDGKPSSKVLDKVEQSLLNLYTNKDKLLKNIKSGKTTKIDIKVDKKQKSSSSTSSSSTAKPSTSTSTSTTSKVSSKPKVIVVYSNYTFTQAVNIQMTKWPQINYGSGWYNAGRADTLKAMNSLEIWNSSSQKYQMLNLGKYQGISVSKLNSILKGKGTLSGQGKAVSDGCKKYNVNEIYLISHAFLESGYGRSNFASGVYGAYNYFGIGAYDNNPNYAMTFAKNEGWTTPAKAIIGGAKFVRQGYIDRGQQTLYRMRWNPQSPGNHQYATDVRWAQHQANTIKSLYDEIGLKGEHFIRDRYKRT	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0014	cloud	direct	high	1938	1.0	GCA_005502385.1_01117
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	167079	167465	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_154	387	-1	0.323	11	GGAGG	GENOMAD.080116.VV	3.013e-28	111	0	0	0	1246	Caudoviricetes	NA	NA	PF10779	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	154	15	9771	10157	MSEENDYVKRHEFERSNGKIYERINQTDKQIIALNGKIDTQNAIQEKNYQSQERSEKHLEKISGEITSFKDGFNEVKNQVDKHSDELDKINATVSDKQKWNVGIATAIISGIFALLGTAMQLAPLIFK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0015	cloud	direct	high	387	1.0	GCA_005502385.1_01118
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	167449	167868	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_155	420	-1	0.350	11	AGxAGG/AGGxGG	GENOMAD.069808.VV	1.659e-72	239	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	155	16	10141	10560	MKKNTILYSLAVVLLSGIGLLEFERGFFWTKEQNDILDDSDFYLALHHIMPIWVWGVLGMICSIFIIIAPFFLPKQKLNHIFDYLILIGGCGNAIFYFFMTSASVYNAINWLSPLQFATITMINVGLAFFGGAEIVRRK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0016	cloud	direct	high	420	1.0	GCA_005502385.1_01119
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	167889	169085	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_156	1197	-1	0.332	11	AGGAGG	GENOMAD.034101.VV	3.866e-38	151	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	156	17	10581	11777	MDGLKKEAKITVVDEPRLNPITDENIGFYNMDINTAVLTFQVRKQDYPLEISKVNTDIYAYFVSDNGSSTGRVQVDYVNPMQGIIQLTLDNDFLKAATDTYVTGQIYIKAVGRKDTVVLNEFRFYVKDALINQIDADIKISYIREIDDLIDNFKKKIENVSQNFSDIETAQADFTAFVNAQKNTFIKQVNDMKNEMNAFANNTQKDLIDRLNSIDDKMLQTLSELENGTENFVTEDELNTLLANYPTNEQLTTQLNGKANVGDVTGNQSVELPDFDVIIKEKVDEALANATLQRFTFTDNNGYIPRIDNPDLYTMSGIDTSGFYYAYNPVNSPDPNNQSGYLLVMARSSSYKKVLFFPFNRHVFYSRNKMGDTTGWGNWYDATNNINVGEMIADVDEI	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0017	cloud	direct	high	1197	1.0	GCA_005502385.1_01120
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	169098	170972	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_157	1875	-1	0.341	11	AGGAGG	GENOMAD.145274.CP	9.257e-05	48	0	0	0	1	NA	NA	NA	PF00246;PF01483;K05996;COG2866;TIGR02994	Zinc carboxypeptidase; Proprotein convertase P-domain	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	157	18	11790	13664	MRKTIYTDLDAIFGARFVRENELNFIATRDMLTNIEKLLDKHSRNETKAHTAEQIKYTLPTGPSTTVDKELRYQNERVRNLVLGNLGNGQQEVRDSRVSMDGQSHSLLSERLKHDFSYIEEETDKLMNVTDDPAYLFNPPYMKSAERGVNETPLSNDPTENLKAFYDVFVDNKYCFKKYIGKDQSGKYNVYSYTFEPEHYSKTVLVTCCIHGNEYSAFYAMSRFMNLVVNKWEKYPQLAYLRKNVRIVMVPIVNPWGFANQERENVNNVDLNRNFDYYWENGSGKSPSGKNYKGSKVFSERESRNMKTLVESLDEITAHMDCHNIVSQVSDYCLFYPRFANQPNNEMTQLLMELSNYGDYVTWGSSTLASFSNWVGITKGITSFLPEVYEGRAGKPRGAEEMWRSVYYLGNILLRLSSLYNGQNGRTANEPIVKSFVYSSRYNNSGVKPFSLIAKDGYQRMLMTQQRFKVTANGFVELNGSITVQLSKDTVFGVNPGVAQNYNPFSGNGKTRKRQLYKIEHKLPAGVHTIPLHAVAPVQFSTTTPDDVKRTNEVMAVVDVMRKEGYAKVLNMVLNVKFTPSHSHNAVQMFTSTGYGNQKEQTFKQIYPNKPAPFDVRNKIITKK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0018	cloud	direct	high	1875	1.0	GCA_005502385.1_01121
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	170983	172233	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_158	1251	-1	0.336	11	GGAG/GAGG	GENOMAD.063468.VV	6.077e-15	80	0	0	0	1246	Caudoviricetes	NA	NA	PF24650	Tal, N-terminal tail tube TT1 domain	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	158	19	13675	14925	MPILVTPIRGRSIPLYVSTTETSKLGSDIVLQFEIVEDEFNYQIVRGLQKRWTISRVQGPKDKREYVVFIIDRQTHGKKQRVSVSCRYKPLDIIKHTRIYDTIDGSFTANNFLKRIFDGTGLKYKIDGSLGSSQFENAGEGESLEDLIKKFCSHFDVEFDIEFNNKKGTYTFVFTPFLNKNASYHIDDEINANNMKVEEDSSELYTYAVGYGDYDDEGGSTAAGFVMKFEHPSIKDYGRYDAPPIKDGRIKDEEVMHQKLQSLIESSVKTSISLDFIALNEHYPNAVPKVADIVKINHSILGINEFVRIVDVKTVRDKDNIIVKQDVTLGDFKRVDRYKKRVSEAAAAVGKLGGQNSFVHTYKVTTAKTNAAIKTTQRQQEDSTTKNIKATKEDGTVVNLSSADIVIDANGNLKLK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0019	cloud	direct	high	1251	1.0	GCA_005502385.1_01122
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	172243	173199	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_159	957	-1	0.330	11	AGGAGG	GENOMAD.057268.VV	6.041e-101	331	0	0	1	1246	Caudoviricetes	NA	NA	PF20195;COG4722;TIGR01633	Phage-related protein	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	159	20	14935	15891	MDIEIKKKDGQRYTLNDFGFKVTNVTVESIEKETDYEKKENTSGRILLSSQYRKRTITVDCYVVSTKLNDNSRLRDEFYSLTNSNEPIHIRELRRTVPLNYRFVQPTEDDYQEIDEYNVLVFNHEPFNDNHYVNGRQYQVMCSDVVVPEENGRKINFSIKFETVELPFAESIGTSLELEKRPDRELWSNDMLIPFDEEDARRRYSFTNIYNNSVYYHGNVPNDQFNLFKKVTVVLGKDVKATEIFQFTLGNSDVMTIEGANLKKGDKIVYDGVQTFRNGVPINDLASNAQPKFYPGWNNFEFNQQVKSVTFDLKFYYL	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0020	cloud	direct	high	957	1.0	GCA_005502385.1_01123
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	173212	177006	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_160	3795	-1	0.378	11	AGGAG	GENOMAD.104182.VP	4.37e-295	941	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	160	21	15904	19698	MAEANYSIKAQIEANTRKFKSAIQSAKKVAQSFKKTQESIKDTKLDGDSSGVMKAVKAARDAVKGFDNTHADAELDADISDVRDKVAQAKTLVEKFDAYRGDAELDADVSKATANIKKVQKYLDMYENSDAEADADVNIRKAITHISELQHNLDGIDGSKYSAVLDADATRAREHIKMAKKQLNDFAHQKAKANLEVDSAGAIAHIKAFKAMLRSIPNRHRTRLEIDGGNSLGFFKSLGAAIDESTRTWDKLATKIRTIGTVLGNMIKGALISNITLLVPAIASVVPALMAVLNALGVVAGGALGLAGAFGVATAGVVGFGAMGISALTMLADGTLEATRETERYEAALDSLKSAWVGLIQQNQSQIFNTLANSIDTAKVALAGLTPFINGVSKGMEQASAKMLDWAKNSQVAQKFFEMMGTTGVRIFNNMLEAAGSFGSGLISVLTQIAPLAEWVSQGFKKMGQSFNEWAQSVEGQNAIKSFIEYTKQNLPLIGQIFGSTFRGIFNLMKAFAPNTHLVLQGLADMAKQFEQWSATIAESDGFKKFIEYVQENGPKLIQLLGNIINIIINVATAMAPFAAAVLDVAIAMTDFIESLTAAHPAIGIMLGLIATLAGIFMTLGPPILGAIDFIGTFVKAITGAGTVIEGFSVIGGIVADAMELVGAALVGIEGPALAVVAVVAAVIAIFVGLWNSSEVVRDAVTGAWKAISGAVGDAVKAVINFFKDLIGQMDYVKGAVESLGAMWDGFVTIVEGAIKLLSPLFESAFNAIVNTVKIAWEVIKAIITVAMHVIVGTITVLLQILTGDWQGAWQTLQEVGQAIWNAIVQAAVNIFNILKDVLSQSWQATVDMFSTIFGPLAEIASTIWNAIVQAILTVVVQLGVFLMTTWTNIVTVAQTMWTMLIAIAQTVWTAIVTAITTIVTTLGTILSTIWTGIVTVATTIWTTLVTVAQTIWTMLVTVITTVVQAILNVVTTVWTTLLSVTSSIMSAISSVISSIWSSIVSIISSIVSSIVSFVSSGWSTLMSVTSSIMSSISSVISSIWSSIVSFISSAVSRAVSFVTSGFHNMLSAIISAMSGMVSAVISGMSNVVNSVRNGVSNAVNAARSFIGHMRQVGVDLIQGMINGVVSMARNLVNAARNVVMGAVNAAKSALHIGSPSKLFKQFGVWTMEGLGIGINKEGKNVISGMGSMANSITEAFNSNLAVPDITSNMKKVNANMNAQVQHTHTVQTNPSQRVVRIEMDVNNEALAAIVNGQTANDDTVFSF	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0021	cloud	direct	high	3795	1.0	GCA_005502385.1_01124
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	177011	177367	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_161	357	-1	0.333	11	None	GENOMAD.074840.VV	2.968e-64	214	0	0	0	6324	Azeredovirinae	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	161	22	19703	20059	MSKLKIYDLKRIEMMTLTEFNYRMWAYEYEQLDKDMEMYKLAFAIRDAQAERKKRGGKKGESEYVFKSANDIIDYEENIKRLNKGEAIKYGSDSKKEVNAPSDLLKLIASHNNSLRKE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0022	cloud	direct	high	357	1.0	GCA_005502385.1_01125
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	177409	177777	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_162	369	-1	0.341	11	GGAG/GAGG	GENOMAD.027610.VV	1.727e-31	120	0	0	1	1246	Caudoviricetes	NA	NA	PF12363	Phage tail assembly chaperone protein, TAC	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	162	23	20101	20469	MEITYNGRKLELSFGFKALNAIDRKLGVEAEQMKFGMGLQSTIPFVLQGNPITLGEYIIAMTSHHKKHPTENDILDVLDDIAENQGLVEFAEELVETLGKRPSTQSLVPDRFKPAKKDNKKK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0023	cloud	direct	high	369	1.0	GCA_005502385.1_01126
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	177843	178388	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_163	546	-1	0.379	11	AGGAGG	GENOMAD.021567.VV	3.208e-94	304	0	0	1	1246	Caudoviricetes	NA	NA	TIGR02126	phage major tail protein, TP901-1 family	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	163	24	20535	21080	MPTKQGTDELVLIRKVGDKKDANKVMLVTELERETEKDRDTEATFDGSVNSGGTLESTVTINCYMDQKDTLCDEIEDATEDDTPYELWVINKRVRNEDGKYKAEYRQGYWNSITRTNEADGIAEFETEFGVYLKKVRGYATLPPAIEENKAAYGFHDTVASDPADDGLADSIPQPTEVETV	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0024	cloud	direct	high	546	1.0	GCA_005502385.1_01127
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	178434	178823	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_164	390	-1	0.349	11	AGGAGG	GENOMAD.081484.VV	2.291e-72	238	0	0	1	1246	Caudoviricetes	NA	NA	PF16807	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	164	25	21126	21515	MKQSVNLQLFNYLYTRFEELDVPIIRTSELNQELPYPFIAIQSIRDDIHRLTFDTYSGSPTAIIHIWCTEEDKGKNDELYIQVQSILLDEIQLNGYTLTLPQISVNESTEQETNQTLSHTTISVEYASH	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0025	cloud	direct	high	390	1.0	GCA_005502385.1_01128
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	178834	179190	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_165	357	-1	0.367	11	AGGAGG	GENOMAD.004125.VV	3.938e-37	136	0	0	1	1246	Caudoviricetes	NA	NA	PF04233;COG5585;TIGR01641	NAD+--asparagine ADP-ribosyltransferase	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	165	26	21526	21882	MRVGGGDLDDLIREFQNMHDNIDDDVDEVLHNNAIDFASDTILEAKEKMNAGYWTGNLARMVEDTKVGHLNYVITSKAGYSGFLEYGTRKMRPRTFMFPVYEKYTKQVRADLERLIED	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0026	cloud	direct	high	357	1.0	GCA_005502385.1_01129
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	179190	179492	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_166	303	-1	0.356	11	GGA/GAG/AGG	GENOMAD.067149.VV	1.011e-58	197	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	166	27	21882	22184	MRYNKRVVFAKETKGKYNPKTSKTETYEKRYDAIPCNISPLSPQKTVVQYGDINKDINIIRLNGRFEPAVTHAYINDTKYQITKRIDYEHDTVFYIEEVK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0027	cloud	direct	high	303	1.0	GCA_005502385.1_01130
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	179489	179818	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_167	330	-1	0.379	11	GGAGG	GENOMAD.009702.VV	3.254e-19	84	0	0	0	1246	Caudoviricetes	NA	NA	PF11436	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	167	28	22181	22510	MATLENVKLLLSINDNVQDELLKRIIDNTEKRLISLLPVDIEEVPDRLEYVVEEVAVKRFNRVGAEGMTQESVDGRSNTFQANDFDEYMDVIDQYTPRTTGKRGTGIFY	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0028	cloud	direct	high	330	1.0	GCA_005502385.1_01131
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	179820	180089	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_168	270	-1	0.337	11	AGGAGG	GENOMAD.069656.VV	5.423e-44	154	0	0	0	1	NA	NA	NA	PF12949	HeH/LEM domain	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	168	29	22512	22781	MTYSYEVVRPFVDAEDNKPYEVGDIYPTDITDERITQLLHADNKYNKQYIKLVVDSKNTKAELIEIARKHGIDVSENDTKADILDTLEG	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0029	cloud	direct	high	270	1.0	GCA_005502385.1_01132
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	180112	181023	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_169	912	-1	0.325	11	GGAGG	GENOMAD.045154.VV	2.144e-150	473	0	0	1	1246	Caudoviricetes	NA	NA	PF05065;TIGR01554;COG4653	phage major capsid protein, HK97 family	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	169	30	22804	23715	MADVKRQDFNPDNVMMHEMKDGTLLNDFNEPIMLEVLQNSKVMQLGRVQDMGGKSEKTFTYWADKPGAYWVGEGRKIQTSKPTVVQATMRSHKLGVIVLATREYLNYTYSQFFEKMKPQIAEAFYNKIDEACVLNVDNPFTQSIEQSVATADNVVNGPITLENVLALEDELLEHDVEANAFISKNQNKTALRNVIDEKTQERYYDKSNSTLDGIPVVDLKSNEIKKGDLYAGDFNKMFYGVPYNMSYKISEEGQISTLTNADGTPVNLFEQEMIALRVTMDFSFHVADDNAFAKLTEGVAETV	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0030	cloud	direct	high	912	1.0	GCA_005502385.1_01133
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	181039	181650	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_170	612	-1	0.319	11	AGGA	GENOMAD.115169.VP	3.82e-51	181	0	0	0	1246	Caudoviricetes	NA	NA	PF14265	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	170	31	23731	24342	MNEIKRLKLNLQHFAEGDDIKKQEPDDKKDDKQKSGDKEVFEITQNELDSQKHKAVNKALANQEKKFEQRLKEAVENARSEGESYAKLTQKEKEEKALSEREKAIAEREKAQTLRELESDVIADLKEQKLPTSFAKALIKIEDNEEIKSTINEIKSDFDNAVQEQVKEATRQSTPSNQSSSFGNRQASGKSFEQLANENRIIK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0031	cloud	direct	high	612	1.0	GCA_005502385.1_01134
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	181820	181969	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_171	150	-1	0.313	11	GGA/GAG/AGG	GENOMAD.099316.VV	2.65e-17	75	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	171	32	24512	24661	MNEFQTALIDVLKDIHHELKRLNDTNPSNQAQAKPKKDKKKSFEPKNFI	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0032	cloud	direct	high	150	1.0	GCA_005502385.1_01135
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	181962	182114	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_172	153	-1	0.301	11	AGGAG	GENOMAD.108990.VV	1.773e-21	87	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	172	33	24654	24806	MDYSKRLDDVMDEYLQVFAKDPNDILTDDMTDYDKIKKLEQAIQSGASDE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0033	cloud	direct	high	153	1.0	GCA_005502385.1_01136
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	182125	182298	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_173	174	-1	0.293	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	173	34	24817	24990	MTEQEKYLKEIATELKLIREQLEKSNNTIEIRSEIDTDSLQEIVNRENLKGSRTFNF	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0034	cloud	direct	high	174	1.0	GCA_005502385.1_01137
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	182303	183295	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_174	993	-1	0.358	11	AGGAG	GENOMAD.004125.VV	2.484e-153	483	0	0	1	1246	Caudoviricetes	NA	NA	PF04233;COG5585;TIGR01641	NAD+--asparagine ADP-ribosyltransferase	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	174	35	24995	25987	MSYWEDRAKEIIDEESKSDYEIAQEIQRIVDEMNEDIEDEINRFYARYAIKEGISFIEAKKKIDAVDVQMFQQKAKQYVENKDFSDKANAELRAYNTKMYVSREKLLQAQLGLIVTYAYAQIEQSMYNYMESAYYRALEQQAGILGETLQVSINDVKTIIFTPFEGHKWSTRLWSDMDVVRRHVQKTTRHVLLRGRHPYEFVKDLRKDTGATTYNMKRLLLTETARVQMEASKRHMLDQHGEDAEYEYVTAQEVLHQRDKDGNIKKTIKVCKVCQALNEKVFKVKDMKPGINAAPMHPNCRCTVIPHKKDWRDKFFEERKGKYNLSKFTE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0035	cloud	direct	high	993	1.0	GCA_005502385.1_01138
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	183302	184795	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_175	1494	-1	0.351	11	AGGAGG	GENOMAD.100877.VP	7.206e-206	644	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	175	36	25994	27487	MLKVNEFERDAEYRQHRDKIYRRDAVETYRYDGTLSEILGDYDFISECIKHHLEAQVPRLQMLDDYYQGLNYNIMRNRRRRERHLADNRAAHDFASYIADFINGYCFGHAIQVQTEDEDTQEKINGLHNLNDIDTHNRSIGLDLSIFGRAYEYIIRNQDDEVRLYKSDPRHTFVIYDNTIEQNSLIAVRYWQTSTREYDDTDIYNVDIITPNATNFFYANKSTNLSLQERRPPEPHSFGKVTITEFSNNEKRRGDFEKVIPLIDLYDNAQSDTANYMSDLNDAMLFIKGNIDFQGMSVEEQKKANVIHLSPEVYRDNEEKATEGNVDAKYIYKEYDVNGVEAYKDRISRNIHMFTNTPDMTDENFGGNQSGEAMKYKLFGLEQRTAIKEGLFRKGLRRRYKLIGQIMSINRELNKDAIQDLTFTFTRNIPKSIKDEMDMYLQAGGQVSQQTLMSIVSFIDNPQQEMERIENEEDAQLQKSDERMYRQGIDNQTDIKE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0036	cloud	direct	high	1494	1.0	GCA_005502385.1_01139
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	184809	186089	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_176	1281	-1	0.315	11	GGA/GAG/AGG	GENOMAD.168146.VP	3.237e-35	143	0	0	1	1246	Caudoviricetes	NA	NA	PF17288;PF04466;K06909;TIGR01547;COG1783	phage terminase, large subunit, PBSX family	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	176	37	27501	28781	MTNLKLNFNHPEKVFNKNIFEILTNYENFTEVHYGGGSSGKSHGVIQKVVLKALMKWPIPRRMLWLRKVQSTIKDSLFEDVKSCLIDYGIWDMCQWNKTDNKVVLPNGATFLFKGLDNPEKIKSIKGISDIVMEEASEFTLNDYTQLTLRLREKKHMNKQIFLMFNPVSKLNWVYKYFFEHGEDMEGVMIRQSSYKDNKFLDKITRENLELLAKRNPAYYKIYALGQFATLDKLVFPKYEKRLLNKDELRHLPSYFGLDFGYVNDPSAFVHVKIDKENKKLYIIEEYVKTGMLNDEIAKTIKQLGYVKEEITADSSEQKSIQEIKKLGIERIKPTRKGKGSVVQGLQFLMQFDIIIDERCFKTIEEFDNYTWQKDKNTDEYLNEPVDTYNHCIDALRYSVERFYKPQTNKRSNIRKSISAIKSMGL	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0037	cloud	direct	high	1281	1.0	GCA_005502385.1_01140
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	186076	186534	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_177	459	-1	0.340	11	GGA/GAG/AGG	GENOMAD.168355.VP	1.175e-13	70	0	0	1	1246	Caudoviricetes	NA	NA	PF03592;COG3728;K07474	Phage terminase, small subunit	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	177	38	28768	29226	MIYEMNGLNIKQQRFADEYIKSGNATDAYIKAGYSKNKANTNATKLLQNTTIKNYINERIKEVQEESLMSITEALALSASIARGEPQKAYTKRYDHLEGEVDKEVTYTITPNVEERQRSLDHILKVHGAYIDKKEITQKNIEINIGDYNDEP	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0038	cloud	direct	high	459	1.0	GCA_005502385.1_01141
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	186554	186934	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_178	381	-1	0.278	11	None	GENOMAD.021766.VV	7.743e-08	52	0	0	0	1246	Caudoviricetes	NA	NA	PF13392	HNH endonuclease	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	178	39	29246	29626	MEIKKRKNLKIHRLVALNFIDNPLSKPFVNHIDGDKLNNDIRNLEWCTPLENTTHAIENGLFVPKVHCVKEGKTIGMFDKDDNLLKTFSRSKEAAEYVGTDHKTIIKVCNGYKSYKTAKGYKWKYI	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0039	cloud	direct	high	381	1.0	GCA_005502385.1_01142
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	186897	187127	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_179	231	-1	0.229	11	AGGA/GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	179	40	29589	29819	MNYSKINEIWKPIKGYEDFYEISSFGRIRSLDRLTNNSYGTFIRKGKLLKTSIDRNGYKYVLLSDGNKKKKESKNS	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0040	cloud	direct	high	231	1.0	GCA_005502385.1_01143
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	187383	187784	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_180	402	-1	0.336	11	AGGAGG	GENOMAD.072097.VV	2.282e-74	244	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	180	41	30075	30476	MYSKEAILNMIDNYQMTCKYLITVIPDCDSNSIAQYGIQATLPKPQGQNSSKVEDTVIRRERMSKRHAQMLAEVEFINQSQQKLGHVDFIFLDHLKKAKRRDEIIKVMPNSRLNRNNFLARKDELAEKIYLLQ	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0041	cloud	direct	high	402	1.0	GCA_005502385.1_01144
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	187797	187940	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_181	144	-1	0.257	11	AGxAGG/AGGxGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	181	42	30489	30632	MWLIILCVFLTILTFGFAIENAKLRGNMEGKEYQIKLLEHRLSKYED	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0042	cloud	direct	high	144	1.0	GCA_005502385.1_01145
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	188014	188181	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_182	168	-1	0.315	11	AGGAG	GENOMAD.052547.VV	0.0001584	39	0	0	0	1246	Caudoviricetes	NA	NA	PF06116	Transcriptional activator RinB	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	182	43	30706	30873	MVKKLVKLITLASISVLGIYLKRYMIVILESEDDIDAPADYALNGDQSDLNKVIP	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0043	cloud	direct	high	168	1.0	GCA_005502385.1_01146
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	188187	188384	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_183	198	-1	0.288	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	183	44	30879	31076	MTDLFIIVFALTLLVTIIGMIVKMYLENTKQERQYKKIAKKTRNKRKEFEERKRKQFENNKLDKE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0044	cloud	direct	high	198	1.0	GCA_005502385.1_01147
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	188390	188659	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_184	270	-1	0.274	11	AGGA	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	184	45	31082	31351	MKLNLGLTILIWIVVTYLVLISLAYVVAFVGTIVLAIKDKKDRKEFREKRNREWIEKEKEFENRMKERREEFYKRNKHIIKDLDKHFKE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0045	cloud	direct	high	270	1.0	GCA_005502385.1_01148
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	188672	188845	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_185	174	-1	0.287	11	GGAG/GAGG	GENOMAD.177907.VV	4.625e-09	52	0	0	0	17384	Triavirus	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	185	46	31364	31537	MRERTKIIFRGWNEEIFILQGKNLDITGLNQISNEIKRLYENYKVVVIPIEVDFEFK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0046	cloud	direct	high	174	1.0	GCA_005502385.1_01149
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	188885	189430	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_186	546	-1	0.319	11	GGAGG	GENOMAD.081026.VV	2.302e-17	82	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	186	47	31577	32122	MNNTLTVEQLKELLQIQKEFDNRIPTLNLQDSKIAYVVEFFEWFNTLETFKNWKKKPGKPLDVQLDELADMLAFGLSITHQLNLDVTEETVENLNNIMQAAKDIDKHLDDIDILSEVYTNLGKNIFNRDSTNSDALTFLTYPFAFSVEYYSLDQLIDAYNKKMEVNHARQDGTADKDKGYV	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0047	cloud	direct	high	546	1.0	GCA_005502385.1_01150
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	189431	189676	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_187	246	-1	0.325	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	187	48	32123	32368	MSELDIVSDYFLDDTFEVTKESASNLVSELQSHKFTIESQQRKLNKLGLIKREHAKWLHGKITVVQFAYNVEEILNNLEDE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0048	cloud	direct	high	246	1.0	GCA_005502385.1_01151
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	189669	190079	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_188	411	-1	0.363	11	GGAG/GAGG	GENOMAD.100778.VV	1.164e-16	78	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	188	49	32361	32771	MAEPTLDELVAFMKKHGVEKVDSITDEKSAIKHFRAASRVYKEERDAYKKQRDELINDMAEVKRKAEAWDKLKEEKTKEYVLRHNQLKQTSILDPRELSIREMVWELKYDLQRMDELDGTNDFKNLLSDWERGSDE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0049	cloud	direct	high	411	1.0	GCA_005502385.1_01152
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	190082	190426	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_189	345	-1	0.417	11	GGAGG	GENOMAD.207300.VP	1.145e-07	51	0	0	0	1246	Caudoviricetes	NA	NA	PF00565	Staphylococcal nuclease homologue	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	189	50	32774	33118	MDINNLYTYKATCTNVVDGDTLDILLDCGFDTYAKRRVRLLGVDTPERGQDKFKEATAFTRECVEHKDIYVQTYKSDVFGRYLANVWYEDGTRSLNDDLRDAGLLKENSKWNEG	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0050	shell	direct	high	345	1.0	GCA_005502385.1_01153
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	190416	190805	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_190	390	-1	0.323	11	GGAG/GAGG	GENOMAD.118370.VP	5.73e-13	67	0	0	0	1246	Caudoviricetes	NA	NA	PF09643;TIGR01671	phage uncharacterized protein TIGR01671	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	190	51	33108	33497	MIPKFRAWDKKDKAIRDVTHIIYMYESVVLNVERTFYERTFCEIELMQLTGLKDKNGTEIYEGDIVKYNSVPNPFLSDNYFKIIQARSGEWRIDNYIEGRVLIFNDHQVEVVGNIFENKELLEDKVNGH	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0051	cloud	direct	high	390	1.0	GCA_005502385.1_01154
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	190802	190987	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_191	186	-1	0.409	11	GGA/GAG/AGG	GENOMAD.068090.VV	2.607e-30	113	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	191	52	33494	33679	MILSNTINQRYRYATQGKTPTQIQHELRELGVKGFVVKVAESRVTMKVSECDIKRNRECLR	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0052	cloud	direct	high	186	1.0	GCA_005502385.1_01155
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	191042	191422	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_192	381	-1	0.281	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	192	53	33734	34114	MMLSSAMQKLIKETVDEIYVAFDIPTHTPIDLDEFLNILDIQLREDSELIYKGKIEKEYNGKTIITIKRHHNEEKRRFAIAHELGHYFLHFNDEEKEFKDSVFYRNLEYNNEEIEANQFALNLLNK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0053	cloud	direct	high	381	1.0	GCA_005502385.1_01156
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	191419	192099	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_193	681	-1	0.361	11	GGAGG	GENOMAD.076174.VV	3.314e-90	295	0	0	0	1246	Caudoviricetes	NA	NA	PF07453	NUMOD1 domain	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	193	54	34111	34791	MVYMYEPFTHTVTETDLSHLHNVTGIPHNTLWYQSKNGIYNDKLKCFFSDTLPRFKKKQEFNEKVVEEDEIWKYSDKYDLYVSNLGRMKTPNGKYKFGNGCKGVITVIYKNSKYRAADIVYETFIKNLKTGHHAYPKDSQYNNIKADNLFSTTFKKYRLYRRNTGRSKPLYLVDSNNEIVEEFASTVEAQSVLFIDRRHVARRCNSRCVNDGLMYVWADEYEELNA	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0054	shell	direct	high	681	1.0	GCA_005502385.1_01157
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	192102	192566	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_194	465	-1	0.325	11	GGAGG	GENOMAD.151049.VP	1.831e-70	234	0	0	0	1246	Caudoviricetes	NA	NA	PF09445;COG4627;TIGR00537;K18896	Predicted SAM-depedendent methyltransferase	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	194	55	34794	35258	MTTKILDACCGSKMFWFDKENQEVTFMDNRELDTTLSDGRKLIVTPDILADFRDMPFEDNSFYLVVFDPPHLKTGGDKSWLIQKYGRLNKNWPEDLKQGFNECMRVLKPNGTLIFKWNEEQIKLSEVLKCFSQQPLFGNKRAKTHWLVFMKLEG	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0055	cloud	direct	high	465	1.0	GCA_005502385.1_01158
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	192569	193018	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_195	450	-1	0.349	11	GGA/GAG/AGG	GENOMAD.003019.VV	5.51e-81	264	0	0	1	1246	Caudoviricetes	NA	NA	PF11753	Protein of unknwon function (DUF3310)	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	195	56	35261	35710	MRISDLKRNDVIRIFKSEKSISSLAIVEKTEGINEFNGIYFWAEVETEDGRTILIDDSWDFEKANEPFTRKVDMQEEQDMVHEPPHYQFGKFSARVIIELVGKTYKSASVFYHVGNALKYLMRAPRKNGLQDLKKAKQSVEFAIENWEG	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0056	cloud	direct	high	450	1.0	GCA_005502385.1_01159
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	193015	193218	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_196	204	-1	0.363	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	196	57	35707	35910	MYDRYKNIPDVYIGGKKYRLCDVYKYFDVGDATVRKRYYKQKLRGWELVYGKGKVPVEIEQGKGIGR	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0057	shell	direct	high	204	1.0	GCA_005502385.1_01160
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	193223	193396	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_197	174	-1	0.356	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	197	58	35915	36088	MATVKAEVVIRGTIELPAYEESDKEMEYTIEQAKKSPEEIFDDIDIKDVDFRYEHWK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0058	cloud	direct	high	174	1.0	GCA_005502385.1_01161
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	193396	193755	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_198	360	-1	0.272	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	198	59	36088	36447	MDNIWKDFAKEYMPEDKFERVCEEIKNSKNVVDVNHEFSLNSFLSVIYSKEDRKVGMRITSGYQNAFDVCYKNEKPIINEKDFGKIDLIFDNKLSIENFIETAQLLLKAYDEITKESDE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0059	cloud	direct	high	360	1.0	GCA_005502385.1_01162
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	193755	194129	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_199	375	-1	0.333	11	AGGAG	GENOMAD.059212.VV	1.227e-19	86	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	199	60	36447	36821	MVKIKVEKKMNLLELIDWAWKNGVKEKAFYSNIDGGSVYFDMVQTVSVEHSIVRTETFNVEVEEEITEDTKIPEMLEIFQDNDGTQWFGNSIEQVKDDFSREFWLKDGNTMTLIWKDGELVGDE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0060	cloud	direct	high	375	1.0	GCA_005502385.1_01163
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	194116	194532	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_200	417	-1	0.367	11	AGGAG	GENOMAD.126137.VP	2.498e-26	106	0	0	0	1246	Caudoviricetes	NA	NA	PF06356	Phage endonuclease I	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	200	61	36808	37224	MSKYNAKKVEYKGVVFDSKVECDYYQYLERNLGDGYDHIELQPRYELIPKLDKQRKTEYIADFALFKDDVVVEVIDVKGMPTEVAKLKAKMFRHKYPKIKLTWICKAPKYTGLEWITYEELIKVRRKRKKEKMKNGKD	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0061	shell	direct	high	417	1.0	GCA_005502385.1_01164
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	194543	194785	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_201	243	-1	0.358	11	AGGAG/GGAGG	GENOMAD.076394.VV	1.349e-30	115	0	0	0	1246	Caudoviricetes	NA	NA	PF11673	Phage Conserved Open Reading Frame 51	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	201	62	37235	37477	MGLIENQPNAYDLFESDGWKLLRVLPRDDGTFYLTNLGGMADKYFKQYVTKEELAEMKRKHKLFKREELKHQTTIDDFLF	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0062	shell	direct	high	243	1.0	GCA_005502385.1_01165
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	194933	195703	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_202	771	-1	0.359	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	202	63	37625	38395	MQSLGSLARNIKPNRNIVEEEHNLKCERCGNIYDYYKFSNGQEFRHGCDCSMIQAGKEAEQQRKQKYLNRIFNQSNVNASLRDATVNSYTPQNEYQIQAKNTAIEYVKTFSLDEPKSLILQGSYGTGKSHLAYAIAKAIKQQGYSVAFMHIPMLMERIKATYNRNATETTDELVQLLSSIDLLVLDDVGVENTEHTLNKLFSIVDNRVGKNNIFTTNFSDKELNQNMNWQRINSRMKQNARTVRVLGDDFRGRDAW	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0063	shell	direct	high	771	1.0	GCA_005502385.1_01166
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	195716	196429	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_203	714	-1	0.319	11	GGA/GAG/AGG	GENOMAD.005411.VV	7.802e-06	49	0	0	0	1246	Caudoviricetes	NA	NA	PF07120;PF06926;COG3756	Uncharacterized conserved protein YdaU, DUF1376 family	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	203	64	38408	39121	MTEQPSYYSIITANVRYDNRLTDSEKLLFAEITSLSNKYGYCTATNSYFARLYEVVKETISRRISNLTKYGYLKIETVKDGKQIKQRKMYPLTQSSIPIDVKINTPIDNSVNTPIDANVKENNTSINNTSINNINRTDNSVTDVTRERFEEWWKLYDKKLDKKKAFSLFKSALKKHEFETIMNGTREYLKTITDKQYQKYPKTFLSQESYLNDFSEELQPSGMDQLNRMKYDESYWD	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0064	cloud	direct	high	714	1.0	GCA_005502385.1_01167
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	196426	196632	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_204	207	-1	0.343	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	204	65	39118	39324	MTIGEKIKNHRKNLGESMAEFGQRFNAKSGVVSNWENNKQKPNNKRLKLIADEMGLTVTELLNGSDET	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0065	cloud	direct	high	207	1.0	GCA_005502385.1_01168
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	196610	197302	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_205	693	-1	0.371	11	GGA/GAG/AGG	GENOMAD.050576.VV	8.836e-54	190	0	0	0	1246	Caudoviricetes	NA	NA	PF16784	Putative HNHc nuclease	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	205	66	39302	39994	MPKIKNYITQDDGTTTVVIEGVELDNKTSLLLDNGFDVEVDVIPVDPFRITNKQRKKIFALVKDIEVHTGMPMDYMRHMFIEYVRTYYGYDERISLSNCTRTQASQIIEVTIDWVFANGIILAHKTSNLLKGDKSLLYWATVNRNCVICGKSGADLAHHYAIGRGANRKKMQHYDYEVLALCREHHSEQHNIGVKSFDEKYILQDSWIKVDSRLNAMLKGEKTNDNRRKN	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0066	shell	direct	high	693	1.0	GCA_005502385.1_01169
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	197486	197905	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_206	420	-1	0.333	11	AGGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	206	67	40178	40597	MTNQTIITGNITNDLEVRQAGNSQVLKFGLGVRGNFKKDETNFIQVEAWGKPAEIISEYCQKGSKLLVIGELKQNRFQDKEGQNREKVYVNLDKFEFLDSKGSNQQNSQPQQQRGQAPAGNNPFANDNNANISDDDLPF	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0067	cloud	direct	high	420	1.0	GCA_005502385.1_01170
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	197919	198581	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_207	663	-1	0.312	11	AGGAGG	GENOMAD.121627.VV	3.018e-19	89	0	0	0	1246	Caudoviricetes	NA	NA	K04487	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	207	68	40611	41273	MTEKQQELNLFQKIADVKANIDGFTKDAKSYNYSYVSGSQVLHRIRNKMIENNLLLVPKTSEENYKQIDVTRFNKKAGREITTSEFIVEMNLTYVWINADKPEEQFEVTFYAVGQQDDVSKAHGTALTYAERYFLMKFFNIPTDEDDADAKEKQEKYSKPNVQKVGELKQDIFSFIDLMKERGREITEEQVKKELNITDYTKLSNGQIANAIQSLKAWSK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0068	shell	direct	high	663	1.0	GCA_005502385.1_01171
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	198574	198798	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_208	225	-1	0.324	11	GGAGG	GENOMAD.068219.VV	3.277e-34	125	0	0	0	1246	Caudoviricetes	NA	NA	PF10656	Hypothetical protein of unknown function (DUF2483)	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	208	69	41266	41490	MKETVTYIIKRKDNDLYVTNMPSHNFPAIKYSTEFRDAKEFNGVDKSSIDMTEHKAIKHTHIEQDKYEEVELDD	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0069	cloud	direct	high	225	1.0	GCA_005502385.1_01172
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	198758	199039	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_209	282	-1	0.333	11	GGAGG	GENOMAD.107023.VV	2.889e-06	46	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	209	70	41450	41731	MQQEYITIPFKEWKNLEKNSLDLFNLTRDLDFARQEIELLKSQREELKEDIRYWIRMYQSASTRADKNAQDIARCTEVHERERNSHLYNQTKR	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0070	shell	direct	high	282	1.0	GCA_005502385.1_01173
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	199041	199808	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_210	768	-1	0.270	11	GGAGG	GENOMAD.112910.VV	1.481e-22	100	0	0	0	17906	Schiekvirus	NA	NA	PF20188;COG1475;TIGR00180;K23370	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	210	71	41733	42500	MNKVKVNEIYETTNYDAFKLSKSNRNVAYRKELFEEAKKGFIAPIVVDKNMTVIDGQSRLFHAQKANVPIKYFIDTDISEKDIVRMNTTQKSWSTKDYIESYANEGNEHYEKLLKLVNLNIVGASALAAISMNITMGGSTNKIVKDGHYEYRNKKTMEFLEFYKELVSKTKIPKYNNLIVAIFKLYKIKKIDTSRLINKINQTNLNEHLGVRQNISKYIELLLESYNHRTRTLETTIDYYITRNGEVIINEEMED	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0071	cloud	direct	high	768	1.0	GCA_005502385.1_01174
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	199871	200059	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_211	189	-1	0.344	11	AGGAG	GENOMAD.089814.VV	3.054e-29	110	0	0	0	1246	Caudoviricetes	NA	NA	PF06900	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	211	72	42563	42751	MTNSDKAMYIAGTMFLTLATALFITGMFFMKALGTALLIAVATYVFFDSFYYEKKTDTHANE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0072	cloud	direct	high	189	1.0	GCA_005502385.1_01175
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	200064	200378	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_212	315	-1	0.286	11	AGxAGG/AGGxGG	GENOMAD.210253.VP	2.028e-53	182	0	0	0	1246	Caudoviricetes	NA	NA	PF05595;COG4707	Prophage pi2 protein 07	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	212	73	42756	43070	MTQTLNVTVPIPETHVVITKEEYQKLVNNSLDPIWSLEELKRKMKISSDETIKKKLLFRPKFMKIFKEKGIVHYPNEDYNRWHINARKMSDFIDEHFEEIHRKE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0073	cloud	direct	high	315	1.0	GCA_005502385.1_01176
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	200341	200943	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_213	603	-1	0.320	11	AGGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	213	74	43033	43635	MNDKVTAIRYLSIELGKSDKEIGDFLGVHRSNITHYRKNNNIPKPTTVGRQGELAVISRLRKLDFEVEDLNLIDKSSRYDLLVNEKLKIEVKSSKRGRDGRFRFSFANKRENQCKTSENVLRLKNGKTVKNYQKFADYFIFVGIDDDVYHFWIIPTNLIKVGQQNLTLNDTYRPIFKNNFDLLKEGMKNDANIECHSTNS	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0074	cloud	direct	high	603	1.0	GCA_005502385.1_01177
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	200988	201185	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_214	198	-1	0.338	11	AGxAGG/AGGxGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	214	75	43680	43877	MKLNLDRLAKTRKRRKKTQDEMATALGFQSRSAYSKRENGVVSLGADELAIIAELLDYDITYFFD	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0075	cloud	direct	high	198	1.0	GCA_005502385.1_01178
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	201406	201732	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_215	327	1	0.284	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	215	76	44098	44424	MRNNDEIIELVTKLMDKNDLSTSELARRLNIAKSSVSRYLNKTSQFPLNKVNEFSRVLNVTPEYLLGVGEYENKNQDTMAAHLDYSDLTEDEQKEVEQFIQFIRNRKK	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0076	cloud	direct	high	327	1.0	GCA_005502385.1_01179
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	201745	202206	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_216	462	1	0.307	11	GGA/GAG/AGG	GENOMAD.123021.VV	1.401e-64	217	0	0	0	1246	Caudoviricetes	NA	NA	PF06114;COG2856	IrrE N-terminal-like domain	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	216	77	44437	44898	MGRYEDLLKKYDYISINETGSIPEFMSGFYMNGEIFINSNRPTTIKLETLAEELAHHEITYGNILDDKDIQNRKYELKARRLACEILIPLKELISAYLQNVHNLYELADYFEVSESFVLQTLNHYKQKFGHSTRCGKYVIQFEPLRVFEYKDI	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0077	cloud	direct	high	462	1.0	GCA_005502385.1_01180
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	202306	202947	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_217	642	1	0.308	11	AGGAG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	217	78	44998	45639	MGEKFNNEQEERQFRQFQEYQKQQEEEKKKKRKKSWLFGCGGCLVLLILIIVGISACTATITGGSDNSSDNKTHKMGEKVKNGDLEVTVNSVETKDSVGSQYAPTTPKGTFVVANVSIKNNGDKALTVDSNMFTLKNKDKSYDADGGASMSANQSDDGNIENSFFLEQVNPDSTTEGYVVFDVSDKVANTEDKKLEITSSLFSSKGVTFDLSE	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0078	cloud	direct	high	642	1.0	GCA_005502385.1_01181
GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	genomad	CDS	203005	204030	GCA_005502385.1	SCOV01000002.1	GCA_005502385.1|SCOV01000002.1	GCA_005502385.1_SCOV01000002.1	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030_218	1026	1	0.286	11	GGAG/GAGG	GENOMAD.016861.VV	0.0001529	46	0	0	0	1246	Caudoviricetes	NA	NA	PF13671;COG2019;TIGR01359;K13829	AAA domain	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad	GCA_005502385.1|SCOV01000002.1	218	79	45697	46722	MKTRCYDGKKWQYEFKYEGKRYRKKGFRTKREADAAGLERMSELKNGIDYQPNLTLSEYFKTWCETFKLSTVSPRTYKSYASAIKHISEHSIGKKPLKDISRYHYQNFINDFSKSHSKESIRKLNGYIRTSLDDAVYEGLITKNPTFKVNYKASNPNKSEDSKFINLEDYEKLKQYLKTKDNASSLVLYIMICTGCRVSGALNLKREYLNQVKNEIYIDEHKTDSSPRYVEVSKDDMKFIIHSVSKLPVTIDGSVFGNLTINAVNKRLKAYCNDLGIKEITSHALRHTHCSYLLAKGVSIYYISKRLGHKNISVTTDVYSHLLEEQYKEENQKAVEIINAM	GCA_005502385.1|SCOV01000002.1|provirus_157309_204030	GCA_005502385.1|SCOV01000002.1@region_157309_204030@tool_genomad_CDS_0079	cloud	direct	high	1026	1.0	GCA_005502385.1_01182
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	53950	54102	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_49	153	-1	0.288	11	AGGAG(G)/GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	49	1	1	153	MVAKERSSITLSKEEAVTFAAKKFKPFHNRIKKQNQKANPFIKLQNNGKS	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0001	cloud	direct	high	153	1.0	GCA_005502385.1_02091
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	54221	55438	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_50	1218	-1	0.337	11	AGGAGG	GENOMAD.111131.VV	6.345e-16	83	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	50	2	272	1489	MWHEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIEEKQNNKTPTTLKTLTFHAACDEWFENYKLTSGAKQSTIRAKTYRLAHIKERINEDILVDKMNAQVIQDYINTSMKENNIKHITIKVNVSLIKSVLKFAQKRYNISDISYIGNVSLPKKAVTREEIKAKRENYLEMNEVHKLIDELNHKASTSNKGYIKRSYMMTAYITEFQVLNGLRIGELLALQPENIDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTRSCEILRKVMLENKKSAKWDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNIGIEKDISTHTMRHSHISLLSQLGVSLRAIMDRVGHKDYKTTLQIYSHVTEQMDKDMMSKLEKVGI	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0002	shell	direct	high	1218	1.0	GCA_005502385.1_02092
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	55452	56843	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_51	1392	-1	0.228	11	GGAG/GAGG	GENOMAD.224248.VP	0.0002494	46	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	51	3	1503	2894	MKKILYYFILISSFFMIIGGISKVSQDGLTFPDIFMFIIFISLITFSIVKLFKHKNLNYKSNKSNNNHKKISNSDTTRSNNVQSNSHIKKNNVPRDTEINNSKKVKQTKPITNSKTDTSSKNKVNLNENVQKHNKVLVSEVKDDNNNNNHHSDLNANDILILHLNKNREVGKEVKNHFYLLENQINVDKILNKLINLGFLDIKSNFDVSLPYLKVPELKDILREYKLKLGGNKPELIERVKTNIDENAIELPQVYVPTSKGNEIIGETEYILHFYNSPIISLGSAHKIAKEVLNVDDKIEYIYLYLLQQNQKSKNSDHRTENIINNLVFYYKKTNKNKNVIRKYTNYSTYLSVAQGIHSAAFLYSDEDNIIDRLFIYFNYHLEYYENMLFIDNVSRSLFKNLFYEDVNSFEDTDKNFCDDICELLFAQIYNNKNITLNDLPTINYILEKIKKENELRITKYDF	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0003	cloud	direct	high	1392	1.0	GCA_005502385.1_02093
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	56926	57633	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_52	708	-1	0.213	11	GGAG/GAGG	GENOMAD.208171.VV	6.002e-131	413	0	0	0	1	NA	NA	NA	PF13744;K22299;TIGR02612;COG3620	mobile mystery protein A	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	52	4	2977	3684	MKFGEILKEYRNSLNLSVNKLSKLSNVSVGYISKIENGKRNFPSIRTIFLLLVGFKNSKLSDQTKSIKDIDKEIKDILSEFISAEDSEIDRKELEKIYNDFNTFYEDLNNEESEKIEKNRKVSLFVFEESKNKIQDIKLKEPINDLSFHLDDNLNEKFFNGVLLNEYDKIMIKEIVNSILTSRIKQEDNYLSEDIEQLQKQFNDFRKEALLNKKQLKMFANHNSLQSLKENNKNN	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0004	cloud	direct	high	708	1.0	GCA_005502385.1_02094
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	57775	57984	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_53	210	1	0.319	11	AGGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	53	5	3826	4035	MNNNLSMLMGRDRVSALKLSKETGISRTTIYGLYHERTKSPDMQTVMKLCDYFKVTPNEFFGIKEKEEV	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0005	shell	direct	high	210	1.0	GCA_005502385.1_02095
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	57988	58260	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_54	273	1	0.311	11	AGGAGG	GENOMAD.111065.VV	1.881e-47	164	0	0	0	17384	Triavirus	NA	NA	PF18010;COG3311;TIGR02417	Predicted DNA-binding transcriptional regulator AlpA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	54	6	4039	4311	MPHVKLQDLPTKENVVTEPKQVIVKPIMAKPNAIAKLFGISYSSVNRILKEYDKDNKGVEDLYYSLSSTMTVISIDGFKEYLSKRHKGWL	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0006	shell	direct	high	273	1.0	GCA_005502385.1_02096
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	58277	58435	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_55	159	1	0.302	11	GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	55	7	4328	4486	MAKFIVKLMSISVISFISGWLLGIHVAFTIYMLSSVIAALNIEENGGLVNEH	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0007	cloud	direct	high	159	1.0	GCA_005502385.1_02097
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	58425	58838	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_56	414	1	0.244	11	GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	56	8	4476	4889	MNINQKLNTTNKFREENEKMKKLTNQDFKNIEGKLNYEHMVNGKKHTNKMIKLLQKRRAKNVSVIKSEYPYLSDNEILEILADYREYEDLLSATETFIDFPNIYEDSNIGKFLTKDDIEELKIAIEEMTVFVERLEE	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0008	cloud	direct	high	414	1.0	GCA_005502385.1_02098
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	58842	59153	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_57	312	1	0.285	11	GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	57	9	4893	5204	MLKDLKQIKESFEIADISNKIQAVIDYVCDEQEGLEDLRDYYKKSNQVVGEKQTNDNMKSNFIIISTLLSVIRDYESELDDIDTVIKRASSVPSDQTKTDNAE	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0009	cloud	direct	high	312	1.0	GCA_005502385.1_02099
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	59237	60850	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_58	1614	1	0.289	11	GGA/GAG/AGG	GENOMAD.096907.VV	7.11e-43	169	0	0	0	1246	Caudoviricetes	NA	NA	TIGR01613;COG3378	phage/plasmid primase, P4 family, C-terminal domain	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	58	10	5288	6901	MDEVSLYKKHYQFHSKLDNVDTPNLSRIKEISKRIYFAAITTEKQIFNNKGNIYHQAKDEFAGDYISNLTLDYTIKPREIGAVYGTISVKTTVENGEEKKEAHFKPSKINSYAKFIIDLITEKVIYSKELDSFIKLKSNQYEIIDNTNFSLEYPVDNKYHINDFLDVMLEVYKEYFINDYQYNIYPYAIAGNDWIYDCKELEFVNKKISNNDYYIIKYDVDKKNINTQLAQKFFDLVSDNERSKNNLMLVHAYTMYRKMKLIQAEKWFLIKDFGRSGKGLFMETFEKLLNVNKVNFDSLLSSGFEAANEWLNFYGADIAHANETGEINKGMMRILRKIATGENISGRGIQRNNVKFKNNAVLILDTNESVDTGEITANRTRTVKIAFKDRPKNETDEERYKVFKPYWDFVKPNGKNSVNASVSFLILSLEYLRQIGREFKFNNVTLKNYYNEDELTDTQILMLKVLSKQDFIFSGDEILQKTIEEDYKSLRYKKSKEDMKKIGVAINQQEWIEGQNTKVHKVKNQELFNMALALIET	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0010	cloud	direct	high	1614	1.0	GCA_005502385.1_02100
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	61020	61841	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_59	822	1	0.327	11	GGAGG	GENOMAD.167439.VP	6.532e-149	467	0	0	0	1246	Caudoviricetes	NA	NA	PF09250	Bifunctional DNA primase/polymerase, N-terminal	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	59	11	7071	7892	MKMYNAAKYLLSKDVQVVPLNDNKKPTVAFKNVTIDDDFIDNNFLAYANTNVLGVLTRGLWCIDIDINHVNGESGFDSLKDIPYYDEFVSNAQNTLVQTTASGGKHVIFKKRDGVEYAQKIGYLPSVDIKAHDNNYFVLAGSKTAKGLYTSNKKPVIAYDGEFEDRIFSKHGKYLQQTMEKFSVKSVLPNHNFNHLQHTGKGGLGKEAYNRVINGESIERNNDVYKAISYALQCNVDIEPLKVIIGDVKANGDEFTLEEWEASYNSARNSLRI	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0011	cloud	direct	high	822	1.0	GCA_005502385.1_02101
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	61816	62097	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_60	282	1	0.309	11	AGGAG/GGAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	60	12	7867	8148	MQETHYEFNIDDELRKLGLLVGISEEMYCCSISRISTLYLENFGTKWVAWRETYDFKNDKRVSYRTIANGSFELVAARTKNYLNYIKRKQGIK	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0012	cloud	direct	high	282	1.0	GCA_005502385.1_02102
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	62094	62738	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_61	645	1	0.321	11	AGxAGG/AGGxGG	GENOMAD.223476.VP	1.778e-125	396	0	0	0	1246	Caudoviricetes	NA	NA	PF16560	Putative mobile pathogenicity island	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	61	13	8145	8789	MNVEIIANEFETRAATLLRYFTGLCESSYKVPFAFKIYNDPFNTVYLVSKGKMYAHVLIKDCEVRKTFEIASEKHTEKLIESIEGYYAGYELHDGTHDTISDMMAEFMFDNDYFMYGLETFAESNNSDMFDYMSRDFNIAELEDVQSSNADVIGNMEMLYQLATGINEPAPELVEGLKIITEFIQNEQANRKDYLALELKLKGLKNSYYNGVKA	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0013	shell	direct	high	645	1.0	GCA_005502385.1_02103
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	63155	63487	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_62	333	1	0.285	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	62	14	9206	9538	MTITIEKELTQDHIKVLNVLRNTKHNIITKQNIFNQLNMEFTKNNERWLQHTINSLVVEHGYPIGYSYKKDTRGYFWIKSKEQKELALLSIKRHIEGSMKRYEALKKTEI	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0014	shell	direct	high	333	1.0	GCA_005502385.1_02104
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	63497	64249	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_63	753	1	0.305	11	GGA/GAG/AGG	GENOMAD.131437.VV	1.202e-130	413	0	0	0	1246	Caudoviricetes	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	63	15	9548	10300	MSAAIEIIQEKVSDYELFTRFNTYYIQSRIALIESDIEDMYDRTTPSLCSDTVSESIYYESYSVENLAIAILEERQKLERYKSRSQRDLNAFYTVLGRFSTKEQKYIKNYINTRSEAHMNVIERFKIELYKYIQTNRNERNKGIENNYSYINDKRQKVKTYPHKLTLNQEKALREKEDGATEKNMNNDEFVAKLNDLDKKSFKEFIYNRNENNIDFEKVLILLQAIPKRLPQKEIKKPYNYIREIGLKTN	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0015	shell	direct	high	753	1.0	GCA_005502385.1_02105
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	64264	64851	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_64	588	1	0.293	11	GGAG/GAGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	64	16	10315	10902	MKTEKYFDEYNEYVIGQRESIDKLEKERQELIQRIKEDKAKYKELIANSQDDEADELYNTFDSNEKKLKALEKRLSTKKEVFDEARRKKAIEIIKHQADLPHLYKKDKERILAKFEPIVEEYNKVVDEIAALNDEYEIEFDRFVRVYDKENFEEDKEVRAEIKNYFSPIKYSNYVSGNELPIIDIRNKMKLRGAK	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0016	cloud	direct	high	588	1.0	GCA_005502385.1_02106
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	64851	65060	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_65	210	1	0.300	11	GGAG/GAGG	GENOMAD.189122.VV	1.204e-26	103	0	0	0	1	NA	NA	NA	PF16722	Pathogenicity island protein gp6 in Staphylococcus	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	65	17	10902	11111	MARKHNLDKVSNYLLTETTLSVDECQKVLDVVEQQISQNIQQQRKDELTQQSQRDRSLMKMFEENRIVK	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0017	cloud	direct	high	210	1.0	GCA_005502385.1_02107
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	65115	65552	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_66	438	1	0.308	11	GGAG/GAGG	GENOMAD.131910.VV	2.948e-69	230	0	0	0	1246	Caudoviricetes	NA	NA	COG5577	Spore coat protein CotF	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	66	18	11166	11603	MNLKRVNYSLSYYETKISEYTLLTEYNPKFINTKIKAITTQIEMMYHLNISHMTTSDVHGVVSISYPLEKLVINIIDEKEKLHRFKTKSNRNMQQLKQVIKRYTPSEQKKVMYYMQSNGSVIDYDLIERLQRDLYAYKHKVSVAT	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0018	shell	direct	high	438	1.0	GCA_005502385.1_02108
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	65549	65887	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_67	339	1	0.304	11	None	GENOMAD.156435.VV	1.996e-49	171	0	0	0	1246	Caudoviricetes	NA	NA	PF11242;K01994;TIGR03879;COG1342	probable regulatory domain	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	67	19	11600	11938	MMYDKQAIKQFIMDYHKEKASNVVSYDDTNIDDFFSLSDEVEPFELSENTGNQVFFNELDQLIYAVATRREYYIFFLLCEGKSMNEIAKIFELSRERIRQLLNGLLDKLEEG	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0019	shell	direct	high	339	1.0	GCA_005502385.1_02109
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	65889	66461	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_68	573	1	0.366	11	AGGAGG	GENOMAD.168355.VP	8.241e-36	136	0	0	1	1246	Caudoviricetes	NA	NA	PF03592;COG3728;K07474	Phage terminase, small subunit	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	68	20	11940	12512	MSDLNPRQEKFISEYLKTLNVTQSAIKAGYSPHTATVQGSRLLKNEKVAKYIDEQRKKVIDEGVLSANELLHILSNAAVGDESEVREVVVKRGEFQRNPDTDKMNLVYNEHVEMVEVPIKPSDRLRARDMLGKYHKLFTDKKELSTDTPIFINIGEWPEDEEEEKRKALDEIHEQHPNRTMIINDIPDED	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0020	shell	direct	high	573	1.0	GCA_005502385.1_02110
GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	genomad	CDS	68342	68458	GCA_005502385.1	SCOV01000008.1	GCA_005502385.1|SCOV01000008.1	GCA_005502385.1_SCOV01000008.1	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458_69	117	1	0.214	11	GGA/GAG/AGG	NA	NA	NA	0	0	0	1	NA	NA	NA	NA	NA	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad	GCA_005502385.1|SCOV01000008.1	69	21	14393	14509	MELIGKLINFIMSTISNWIGSNELIRDIFKIKDNKNDK	GCA_005502385.1|SCOV01000008.1|provirus_53950_68458	GCA_005502385.1|SCOV01000008.1@region_53950_68458@tool_genomad_CDS_0021	.	unmatched_CDS	none	0	0	.