core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	1	762	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	2	763	GCA_005888265_1_21_1	GCA_005888265_1_21_1	-	41313	.	CDD:pfam07484	Tail-Collar-Domain	MAGLNETNKWETEIYRIEENDPVHGGEDGITNKPIKQLANRTKYLKTEVEKRYIAQNASTEQTGLVQLDSNTDSDAEDKAATPKAVNVVKALVIAVRNALNNYIPNSKKSNADNSSSSDTIATSYALKKVRDIATKRATDTTAGQTVLSHKTNGTDKSKSASEFALGELNKELAGKGVPLGAVVSFPKGMNPRGYLRAIGGTFNRATYPDLYVANGNSDILPNLHRSDVGMTAYFAVDNIPTGWIAFDSIRTTV	common_virus_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0001	shell	ambiguous	low	198	0.26	GCA_005888265.1_00740
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	794	1363	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	795	1364	GCA_005888265_1_21_2	GCA_005888265_1_21_2	-	41313	.	PFAM:PF09684.9	Tail-protein	MARLRYPDIIARDAKYTALAELGQRLPQFKLSPIMTTLVDLLDDRFIEVLAEKWSVTGYDGLFLATTQESKKGLIKKSVELHRHKGTPWSVREVIRQLGFGEIEIDEGLKNRDYSANTFVNKIPSDERWAYYGIQLSKPVTNEQAVEIRKILRNFVPARCLLGVLDYKSAPVLYNNKVRYNKQYNHGSV*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0002	shell	direct	high	569	0.998	GCA_005888265.1_00741
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	1356	2462	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	1357	2463	GCA_005888265_1_21_3	GCA_005888265_1_21_3	-	41313	.	CDD:COG3948	baseplate-assembly-protein	MKADDVKIVSEDVKQILADTIADYEKRTGKTLQPAHIERSIIQSYAYRELLVRKGINEAFLNTFPQFAKGLALDLCGEPMGCYRLQDKPARCVLRFSIEATHPLVLIPKGTRVAVDEKLEFITLNDDVITPLITYVEIEAQANIKGPMGNGWEIGRVKTLKSPLMTSLEVKVSNIDVPSGGLVQESDDDYRKRILSAPEAFSTCGSVAAYDYHVRAVSQAIADVNVATPKGGLVRITVLTKEGIPDSRLLNDIKQYVSGEKRRPLCDTVEVKAPTQRDYQITATLKLLDGFREDIVKTKARDALQFYLSDKTKKLGLDVVPSALISALRVEGVYDVTLTSPQKIVVAENEWANCTAISVEVESERTNG*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0003	shell	direct	high	1106	0.999	GCA_005888265.1_00742
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	2462	2827	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	2463	2828	GCA_005888265_1_21_4	GCA_005888265_1_21_4	-	41313	.	CDD:COG3628	baseplate-assembly-protein	MNTHTHLTTHWQLAPNDEVQSVIQGIDDIHLCIANILNTIKGTDILRPEFGSDHFRYIDQPEDLAVPNFVREITFALQRFEKRIEVDEVKVSGNAPHFTFTIFWSLKEDVYREIYSTEVKG*	common_virus_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0004	shell	direct	high	365	0.997	GCA_005888265.1_00743
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	2882	3490	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	2883	3491	GCA_005888265_1_21_5	GCA_005888265_1_21_5	-	41313	.	CDD:COG4540	baseplate-assembly-protein	MQTHNFTATYQEGIVSAVDSTKHKVRCKIPALDDLETAWLSYLTPNAGGNQFYCLPDVGELVAIILDARGEGGCVLGAIFNAQDPTPTGDSNIWMKKFSNGTIIKHDRNSGNVEVSAVGEVLIKSPSKVTIDCPATETTGDLMVKGALTYMKGMTGYGGGGATAMINGSLETKGGDIKADNISLKTHKHTEQGDGKDTSIAK*	common_virus_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0005	shell	direct	high	608	0.998	GCA_005888265.1_00744
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	3477	4541	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	3478	4542	GCA_005888265_1_21_6	GCA_005888265_1_21_6	-	41313	.	PDB:3CDD_F	tail-protein	MSNIAQPDFSLFYEKTNITADIEPHLIELSYTDYLEGQSDELVVQFEDISGKWIRAWFPTQGDKLKGAIGYKGEQLVDIGAFEIDEVEYQYRPSNITLRALSAGVSKNQRTLKPKAYEHTTLAQVIAVVAKRLKLKVVGEIKHIPIARITQYQERDLEFLARLGREYHHSFKVVNDQLVFTAKEKLGESESVLTIEEQDTISISLRDRISSTAKEVNISGYDANGKKVIKKSKKAKAKREDVSQAAKSSEDSLQIVTRGESQEQIDARGEAALAEQNDDQQSGTIKLWGNPKLVAGNTILLRNLGVFSGKYLIKSSRHTIYRNQGYTTTIDVRLLEFIADDLVTQSMEKHNANP*	common_virus_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0006	shell	direct	high	1064	0.999	GCA_005888265.1_00745
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	4534	4764	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	4535	4765	GCA_005888265_1_21_7	GCA_005888265_1_21_7	-	41313	.	COG5004	P2-like prophage tail protein X  [Mobilome: prophages, transposons]. 	MTQTVLKHIVKQGERWDNLAYHYYGDALEYSRIIDANPHLSFYEVLPTGATVFIPVLQVKPTNNEDMPPWLRGDNE*	mmseqs_cdd	nonviral_gene	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0007	shell	direct	high	230	0.996	GCA_005888265.1_00746
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	4745	5677	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	4746	5678	GCA_005888265_1_21_8	GCA_005888265_1_21_8	-	41313	.	PFAM:PF06995.10	tail-protein	MYLMLGTIALEPIDITDFSEIQAARFAEHQVLKGKPRLQAMGESLAELNLSVRLHHKIGGVERRYQALLAAKAKQDALALIWGRGKFKGNFVITDIHSTTLFTDKYGNVLCRELTINLKEYVGELKNNLLGAALNIGKGSLLGSILPPEFFAGMNAAKEALTKGIDLYNQGKRIVDEVQNTIAIMKQFSQDPATALAYLPSVLGNLDGALGSFSELTGMRELFNGVRSVLPVVSEFSQEVAEIQSGLMAIQSDFQQGSSGSDWSEWFPSANRTMSEVAESFDFLAPRVAEMTAWIVLRNDDEVNNDTDRA*	phrogs_hmm	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0008	shell	direct	high	932	0.999	GCA_005888265.1_00747
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	5677	8268	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	5678	8269	GCA_005888265_1_21_9	GCA_005888265_1_21_9	-	41313	.	PFAM:PF10145.8	minor-tail-protein	MANNLVLGLVIGASLKGSFSAAFGKANKTIENLSNNLGKATQQNEKLGAKMAKWQERQAALHQKMQLAYLSGDQNIGKLTRRYERMQAVIARTAEKQQHFTRAIQSSEKAQRSLSSTLEKQQARKQNRDELKGKLAKSTAITASVALPTWNAVKTYMQQEEAANNLKISMMKADGTFGKFKEIGKIADQLGTDLPGTREDFYKLAKAMKMQGVSDDTLINSGLKTSAKLNVLLEMDQEQGGEFFAKMMESHGLSEAELGASADDLQRAMFAAGMKKDDMYGAMTYYASNVRSMKLTGRENSQKIYAIEGLAAQQGLEGTSFGTNFSTMLDRMSKGPQMIAEAKKGMKAEARDILEKSGVKFNFWDKKGNFKGIDGMVKELEKLQKIRAKFGDQAAQDVADAMFGTEGKRVALLLGEKGTTGLQDFLQKMKDQASIEERVAQKTKTLGSALESLGGAWESAVGNIGSVFADDIKSGAKALQGFVEDTLTPFVSEHKTAIKWIATTVGGFSLLSTGVLATKFAFSGIASIFSAAFMPFKVFKAIKAAKELETLTGTVTKTGRVMKWLGSAFGVVKKAFIGLGKALLTNPIGLTITAIAVAAYLIYDNWEPISAWFANLWTNVTTYFQSFCTWVQGIWNSATEWVSSAWSGVSDYFGQLWNNITTFFNSGIGNITATILNWSPLGLFQQVFSTVLSWFGIDVPAKFTDFGKNMIDGLVNGIRNAWEGAKQIVSDLGDGIKGWFAEKLGIHSPSRVFMGFGENTVQGLAIGINKSLGLAEKASDEMSNAVGIFPHSDYQSLQTTFAQQQSEQAQHGGMTIHFNPTINVNGSSNNQVLNDVKEGLNISLREFETMLARVLDQQKRRAY*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0009	shell	direct	high	2591	1.0	GCA_005888265.1_00748
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	8314	8628	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	8315	8629	GCA_005888265_1_21_10	GCA_005888265_1_21_10	+	41313	.	.	hypothetical protein	MFDLFKEIIEDWKDYDMVEKAYWSAIGLLFSIGFLAFSWWYWVGMFNATDNFFIAFGVGFILYLVLGAIIALVTAPLMTLLSLSAATITGAIIGLVKFYRQART*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0010	shell	direct	high	314	0.997	GCA_005888265.1_00749
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	8613	8759	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	8614	8760	GCA_005888265_1_21_11	GCA_005888265_1_21_11	-	41313	.	PF06528.12	Phage P2 GpE	METLNNAIADVVWWFGFSAEEINNWTLKELDDWLAQANRQVKAGYVRA*	hhsuite_tools	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0011	shell	direct	high	146	0.993	GCA_005888265.1_00750
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	8743	9027	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	8744	9028	GCA_005888265_1_21_12	GCA_005888265_1_21_12	-	41313	.	PFAM:PF10109.8	tail-protein	MSQKVDAVRTTIKLSSPVQLPDGTTLEELKVREPLVKDFRTASQQGKTNEDREIIVAALCCGLVLEDMDLIKWKDYVQVQRFLFGSDDTDGDVK*	phrogs_hmm	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0012	shell	direct	high	284	0.996	GCA_005888265.1_00751
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	9121	9639	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	9122	9640	GCA_005888265_1_21_13	GCA_005888265_1_21_13	-	41313	.	PDB:5W5E_O	major-tail-protein	MSVAINQIINANVYMDGNSLLGKAKEFKLPDIEFEQIEHKGLGLVGTIKLPSGIAALEGEVTWDSFYPEVRAKAYNPMKNVQLMARSNLQVFDARGLVAEEPMVTIMNVSFSKITGGSLKNKEATEHADTFQVHSIKQTVGGKEIFFYDAFANILRVNGQDVLQKYRTNIGQ*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0013	shell	direct	high	518	0.998	GCA_005888265.1_00752
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	9650	11035	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	9651	11036	GCA_005888265_1_21_14	GCA_005888265_1_21_14	-	41313	.	PDB:3J9Q_Q	tail-sheath-tube	MAFHHGTETKRVTGGSVAVETVDGAIIGIVGTAPIGPLNELTLCQTKKDFAKFGTILNQGFTLPDAFDVIARYAAGQVYVVNVLDVSKHKSEIQDESITLDETTLLANTQKKGLLSLTLKSNSTPLTLNEDYWVDMQTGEIRLKVSKTSLTATYTYADPSKVTEEDIKGGIESSTGKRKGFELLRDGFNLYGADAKILICPEFDKTASCASALGTLAEQLKAVAYVQLPKGTSLSKAIQGRGPQGTINAKDSTERVRHFFPYALGSSNQLESLAVHAAGLRMKVDVEKGYWHSTSNHQLLGVIGMELPLTARIDDIQSETNRLNAVGITTIFNSFGTGFRLWGNRSSNYPTVTHIINFETALRTGDLIDESIRMVELQYIDRPIDDALIDSLTETVDTYLRALPSIVGYSLGLDYDYDLVDAFSKGQVPIKYDYTPKLPAERITNTSVMTRKYLVNLVSQK*	common_virus_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0014	shell	direct	high	1385	0.999	GCA_005888265.1_00753
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	11045	11542	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	11046	11543	GCA_005888265_1_21_15	GCA_005888265_1_21_15	-	41313	.	PDB:2GJV_C	tail-completion-protein	MSATQTILNSIQTHLLSQIDRFAIELFPDNPSEYFLRDESGAILIQYAGSKFERINSTDIIQQRRTVTIALTVIARSQHNDDGALAILDQVRLAIVGFRPENCLACALINEEFAGEADGLWQYQLLVQTETWQVEQTKAVDLPKLANVYSRKPTDPLNPILQPKS*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0015	shell	direct	high	497	0.998	GCA_005888265.1_00754
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	11554	11988	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	11555	11989	GCA_005888265_1_21_16	GCA_005888265_1_21_16	-	41313	.	CDD:cd08053	head-to-tail-adaptor	MYISAQDLTEVLSERSLIELSNDHSRATEYNPLVLDKACQYATETVDGYLRSRYLLPLKSVPTIVRNICLQLARFWLYSRRPEGTGFPENVKDTYAQALKDLERIQSGKLHLGLEELNENGTNALDDVAKFKTRANKKIDLTGY*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0016	shell	direct	high	434	0.998	GCA_005888265.1_00755
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	11988	12305	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	11989	12306	GCA_005888265_1_21_17	GCA_005888265_1_21_17	-	41313	.	.	hypothetical protein	MNKKMLYAVVGTMAILHNGKRYEKGDKIELTAEEAENLSLYIQLDQSELEKQKEERRLAEEKAEQERLAAEKAQKEAEEKAEKERLVAEKAQKKTEEKTKGKADK*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0017	shell	direct	high	317	0.997	GCA_005888265.1_00756
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	12371	13297	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	12372	13298	GCA_005888265_1_21_18	GCA_005888265_1_21_18	-	41313	.	PFAM:PF03864.14	Major-Capsid-protein	MSDLSKHRVVDPVLTELAQGYYNGNMISEVLFPIAETQKEGGKIPTFGRLAFRLQTTKRELRAASNRLTPEDIGSLTVVLEENDIEYPIDIREVNEGEGVYPLRQYATGVTQDVIVLNREKACADLALNEDNYDASNKITLSGTSQFTDKNSDPISVIKAGIRAIKRATGRKPNVCAISGDVWEVLSEHPKVLEKIKYVATAVLTPEDFAKLVKIDKVIIGEAVYEQSSELKDIWSKAIVLAYVAAASKEKKQNIYEPSYGYTVRRKNGLYVDTYTEVGGKVEIVRTTDINKPYIVGKAAGYLIKGCI*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0018	shell	direct	high	926	0.999	GCA_005888265.1_00757
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	13316	14419	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	13317	14420	GCA_005888265_1_21_19	GCA_005888265_1_21_19	-	41313	.	PFAM:PF10123.8	head-maturation-protease	MNLIEIFKAGTRKDANGKEVTLTIEDLQQAVQSYNVEFHEAPAVIGHPQHNHPAYAWVKRLELDGDILKAEFDQIDPEFAEMVDKGRFKKVSASFYLANSQANPKQGSLYLRHVGFLGAMPPAVKGLRNPEFAEDEEGVVDFSDWTEATLWRRLRDWFIGKHGQEEADKVLPDYLVGSVQEEAVRNSLQPQKAESPIFNEPTQQQGEPEMSAEEKAELERLKAENQQLKDEKAQAEAQKAEAQLNQTKAENADFAESLVSVGKLAPVSKEKAIELLNCAAVQSAGGVVEFGEGENILTAIKAFLEAQPQIIQFGEVATKDNATTTEDNTVEYAEGTSAEAIDMDKRVRAYMKEHNVSYVTAFNAIHS*	phrogs_hmm	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0019	shell	direct	high	1103	0.999	GCA_005888265.1_00758
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	14662	15162	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	14663	15163	GCA_005888265_1_21_20	GCA_005888265_1_21_20	-	41313	.	PFAM:PF05069.12	virion-morphogenesis-protein	MIKITLNDTQALAKLHSIAQQLQHPRKLYGLLGETLKKIHADRFKAEVAPDGKKWQPLSSITRKIKGNDQILKQGGYLSQKTAYNYDDNRLEFGSDAKYARLHQFGGVIRPKKGKRLKFGKGSNTVYAKQSKIPARPWLGVNAQDEQKLLKKATALLQRQINQNLK*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0020	shell	direct	high	500	0.998	GCA_005888265.1_00759
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	15226	15423	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	15227	15424	GCA_005888265_1_21_21	GCA_005888265_1_21_21	+	41313	.	.	hypothetical protein	MSNYEDNLLRNIFVAQVATLAKAIKAEKLAQGTRTTSDCYREAIIEIKRNREKILSLLDEIQAHY*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0021	shell	direct	high	197	0.995	GCA_005888265.1_00760
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	15365	15553	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	15366	15554	GCA_005888265_1_21_22	GCA_005888265_1_21_22	-	41313	.	.	hypothetical protein	MTELEERKKALELLPQFQGLTINEIISVLHWLQAYVQDYQRFEISNELVSHQEEIESSHDSV*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0022	shell	direct	high	188	0.995	GCA_005888265.1_00761
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	15740	17017	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	15741	17018	GCA_005888265_1_21_23	GCA_005888265_1_21_23	-	41313	.	PFAM:PF04233.13	minor-capsid-component	MSKFTFQEQSRYFEKKLNLKTNSYLDVLGEEHDYFFVVAGANRNEVINAFREAVDQAIHHGETLESFRQRFDEIVEKTGWDYNGGRNWRTRIIYDTNVYGAYNRGRLQQHLDLADVMPYWEYQHNDNSHPRPEHVALDGTIRPATDQFWKYYYPIKAYGCHCTVIAHDEHDLKAMGKQVSPPVEIEYEDKLVGVRSGSPRLVTLPKGYDVGFAPYNFDDLSSSRNVEIDSILFQKLTTAEPRFASLLIQDVMKNTATVALLNHSMKEMVETVSNEKIARGKMKYVGVIHDEVIDKLTAMDKAPQTAVIAVRDEDVLHALRDTKQAKGINLPIEFWEQLPEKLRNPKAILFQPKESFNDKNAKDTLLFIYDTDHGKVAVKMDYEVKLRDQLTSKKFKANLNVVKTASVIDEDLKKLQQFEVLWGEL*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0023	shell	direct	high	1277	0.999	GCA_005888265.1_00762
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	17018	18433	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	17019	18434	GCA_005888265_1_21_24	GCA_005888265_1_21_24	-	41313	.	PDB:5NGD_C	Portal-protein	MAKKFDLVKEIAVRSHAIDYFSMGQYLPNPDPVLKKMGRDISAYREVLSDSHVAGCVRRRKAAIKGLEWRITPTGNEKTDEILTALFERLPLPQIITEMLDAALFGYQVLEVMWENQNGLWLPAELIGKPQEWFVFDEQNQLMLRDKENRNGKLVPEKKFLLTTQEANYTNPYGKPDLALCFWAATFKRGGFKFWLEFTEKYGSPWLVGKHPRQAQTHEIEDLLDSLEQMIGTAVAAIPDDSAISMLESASKGGSSQVFDEFLKYCKSEIAIALLGQNQTTEQESNRASATAGLELTKEIRNEDITLVESGFNQLLNWICELNFNVETLPKFELYEQESIDKVQVERDQILSQMGVKFTAQYLHRTYGFEEGDIELTVNNTPKTAEFNEPTLPSNIADGVVEQLEMEGEPYVEDWMQTIKDRLSQAESLEDFRNQLDSLIPELNFAEYGELMAWASTTAFLAGRQSVVEEK*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0024	shell	direct	high	1415	0.999	GCA_005888265.1_00763
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	18435	19757	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	18436	19758	GCA_005888265_1_21_25	GCA_005888265_1_21_25	-	41313	.	PFAM:PF03354.15	Large-Terminase	MGLTTNTTPRTVLYNYQKRWLQDNSRFKVAMFSRQSGKTFTTTLEIVLDCMACEARGEKTRWVILSRGERQAKEAINEGVKRHLEAVGIACQIMEVPFSPTINALEVIFPNGSKITALPANPDTARGFSANVFLDEFAFHQDSREIWKALFPVISADWKLRVVSTPNGKGNKFYELMTDLNNTEWSRHTVDIYQAVADGLPRNIEQLRKGLNDEDAWAQEFELKWLDEASSWLSYDLIDAVEHHQAGIPELYTGNPCFVGMDIAVRGDLTVIWVIELVGDVYWTREVITLKRVALREQLAELDRVFNQYHVITCYLDQTGMGEKMVEDAQYSHGKRRVQGVLFNVATKLNMATIGKNAFEDRQIRIPQGDTDLREDLHKLKKVTGSNGVPRFIAESDSKGHADRTWACFLALTAAKEGVIMPIKAQSRKPRTSRKMTQGY*	hallmark_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0025	shell	direct	high	1322	0.999	GCA_005888265.1_00764
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	19741	20289	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	19742	20290	GCA_005888265_1_21_26	GCA_005888265_1_21_26	-	41313	.	pfam11985	Protein of unknown function (DUF3486). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are about 190 amino acids in length.	MAPRSSIEQLPEDVRRWLERALTENGFAGYVELEKLLKDKGYSISKSAIHRYGQKIEGRLKAIKESAEIAKLITESVDDDGDSQSDALMRLVQTDLMNILIESRNTEELSVKDKIKLFGNIGKNIAAMTSASVKLKQYQAEHKAKLLAKLDEMAKNAEQEGNDMPTLERVRKGLLETYGLNN*	mmseqs_cdd	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0026	shell	direct	high	548	0.998	GCA_005888265.1_00765
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	20299	20601	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	20300	20602	GCA_005888265_1_21_27	GCA_005888265_1_21_27	-	41313	.	.	hypothetical protein	MMEKARREGMRWQLLNVLHKAMPYTTSEQFLLDVIRGIYPNVTALEIRQQLEYLQDRKLISIDKQPHGVWFADIHRLGVDIVEYTIDCQAGIARPEKYWA*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0027	shell	direct	high	302	0.997	GCA_005888265.1_00766
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	20598	20906	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	20599	20907	GCA_005888265_1_21_28	GCA_005888265_1_21_28	-	41313	.	PFAM:PF07889.11	lipoprotein	MTINVEFWHLVGLLISFLGCCFGFAKMLVAQFQNSLSERHHNQMKVNDKVEDIEKQLNQMQSALPLNYVLRDDYIRGQAILEAKMDALHKTLSDLYKMESTR*	phrogs_hmm	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0028	shell	direct	high	308	0.997	GCA_005888265.1_00767
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	20903	21286	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	20904	21287	GCA_005888265_1_21_29	GCA_005888265_1_21_29	-	41313	.	.	hypothetical protein	MNLQVIVVCTTFFILLCGYVFFRLKQAQRRVEKLIEENAQLQTEKAVAQTQVKHHQVRQKNEENIVSSSRERIIDSLHNKTISVINPSCSGFRLIKASRQDSTETLRQILVHNQTYREICPIQGEKK*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0029	shell	direct	high	383	0.997	GCA_005888265.1_00768
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	21283	21513	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	21284	21514	GCA_005888265_1_21_30	GCA_005888265_1_21_30	-	41313	.	pfam10841	Protein of unknown function (DUF2644). This family of proteins with unknown function appear to be restricted to Pasteurellaceae.	MKKLNELITNTDGRLSTTGTIQFGGALLMAIILAICVYLDRSYVPELFMTFAIFCGGGIATKGFANAMERRQGGRE*	mmseqs_cdd	nonviral_gene	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0030	shell	direct	high	230	0.996	GCA_005888265.1_00769
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	21497	21598	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	21498	21599	GCA_005888265_1_21_31	GCA_005888265_1_21_31	-	41313	.	.	hypothetical protein	MKREIRGITFFSLVWEVMIFGGFIKEPKNEKAE*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0031	shell	direct	high	101	0.99	GCA_005888265.1_00770
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	21601	21744	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	21602	21745	GCA_005888265_1_21_32	GCA_005888265_1_21_32	-	41313	.	.	hypothetical protein	MSASIKVKVSRSLKGKSFQKLSNNAKQNQRLNSGVTAANAFYLLWGY*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0032	shell	direct	high	143	0.993	GCA_005888265.1_00771
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	21753	22289	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	21754	22290	GCA_005888265_1_21_33	GCA_005888265_1_21_33	-	41313	.	PDB:1M0D_D	endodeoxyribonuclease-I	MAIHHIVIHCSATTNGKPLRTSSQSAAERIDEWHQKRGFKRNPTYIKRFNPHLKHVGYHFIIDTNGTVETGREVGETGAHVKGHNQNSIGICLVGGITGMGKNHGEYTRKQWQALHKLLRKLESRFPSSRICGHRDLSPDLNGDGTITPNEWLKDCPCFDVWEWLDSEQVINDEHLFE*	common_virus_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0033	shell	direct	high	536	0.998	GCA_005888265.1_00772
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	22376	22795	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	22377	22796	GCA_005888265_1_21_34	GCA_005888265_1_21_34	-	41313	.	.	hypothetical protein	MKKWLVITLMMLGITACGEPEDPNAPTQAEKDTLTLAFINKIKKDSSGAVECKTKQVNNRYYVGCALISLDGRGNTYIFLYNKDKDPVKRFYALNGTAMTIYDNYFKNESLLGSYKDTFGLPMEKDIDLSLIQKSFEEK*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0034	shell	direct	high	419	0.998	GCA_005888265.1_00773
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	22869	23243	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	22870	23244	GCA_005888265_1_21_35	GCA_005888265_1_21_35	-	41313	.	pfam08765	Mor transcription activator family. Mor (Middle operon regulator) is a sequence specific DNA binding protein. It mediates transcription activation through its interactions with the C-terminal domains of the alpha and sigma subunits of bacterial RNA polymerase. The N terminal region of Mor is the dimerization region, and the C terminal contains a helix-turn-helix motif which binds DNA.	MSTNADIFDEKAPEILADLAKHIETQLLTKVKSNEFNSELAKQIGIEVASHIAQSWGGEVIYIPRNLVLLLSERDRKIFNEFNGSNHRELARKYNVSMQWIYQIVKKVTKEEIARRQFDMFSEK*	mmseqs_cdd	nonviral_gene	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0035	shell	direct	high	374	0.997	GCA_005888265.1_00774
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	23247	23735	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	23248	23736	GCA_005888265_1_21_36	GCA_005888265_1_21_36	-	41313	.	COG4382	Mu-like prophage protein gp16  [Mobilome: prophages, transposons]. 	MRYTKAKYIQLIHIAKHKLSIDESTYRSLLMNLTGKSTCKQMKVTELDKVLSALETKGFQNNAASFHKKTHTSNYHSPSSGKAVVKHDIALKIRAVWIDMSKQGFLRDGSEEALNQFVRNVINPILKPEKLMVLGVAALDYRQGTIVLERLKKWREREINRS*	mmseqs_cdd	nonviral_gene	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0036	shell	direct	high	488	0.998	GCA_005888265.1_00775
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	23845	24132	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	23846	24133	GCA_005888265_1_21_37	GCA_005888265_1_21_37	-	41313	.	.	hypothetical protein	MAKYLYRYALESNNPTNNDDGNIWGDESLCFDDVALHIAKENAYAWDMFEEPEREVMYVWRDGDFENRLRFLAKFEVIQRLDVIELEEDDDPDDF*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0037	shell	direct	high	287	0.997	GCA_005888265.1_00776
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	24136	24366	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	24137	24367	GCA_005888265_1_21_38	GCA_005888265_1_21_38	-	41313	.	pfam04448	Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	MSENNGWIKCSERLPDTFTGFDLLIRSLPVLVYGKYTAGENNKIFGAQIFGDRWYSADGECAEITHWQPMPQPPEE*	mmseqs_cdd	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0038	shell	direct	high	230	0.996	GCA_005888265.1_00777
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	24367	24741	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	24368	24742	GCA_005888265_1_21_39	GCA_005888265_1_21_39	-	41313	.	.	hypothetical protein	MQTKIIQWLADDENVGLSSKCMAFVIGFDVIPRRKSYPLDPSDLSRCVKLLERVPKMRDYLYKMKEISPIWAKLVEHWDELERLLNEEKGSGRCPKTYQLMKKLTEDDQNVVFRHGGFSIRRGK*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0039	shell	direct	high	374	0.997	GCA_005888265.1_00778
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	24814	25032	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	24815	25033	GCA_005888265_1_21_40	GCA_005888265_1_21_40	-	41313	.	.	hypothetical protein	MTVPTLNLDDITREVADVIGNLELVQSCVLDGDIDTAKTMYARTLEMAKKFGHRFACSEVKLEFGAVFDPNC*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0040	shell	direct	high	218	0.995	GCA_005888265.1_00779
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	25029	25187	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	25030	25188	GCA_005888265_1_21_41	GCA_005888265_1_21_41	-	41313	.	.	hypothetical protein	MADYIVRLYGVIEVKMTAETLEQAIELCDLNTAPSLTGMVVEIDSVIEGEEV*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0041	shell	direct	high	158	0.994	GCA_005888265.1_00780
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	25197	25394	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	25198	25395	GCA_005888265_1_21_42	GCA_005888265_1_21_42	-	41313	.	NF033650	ANR family transcriptional regulator. ANR family transcriptional regulators include the AggR-activated regulator Aar. The name ANR (AraC Negative Regulators) refers to an effect on, rather than homology to, certain AraC family transcriptional regulators.	MNKSINKFDRFKYYSEQAANSERRGELQDAKEQWAIAELNAPNARNQEWCKHRAVFCERALRKPF*	mmseqs_cdd	nonviral_gene	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0042	shell	direct	high	197	0.995	GCA_005888265.1_00781
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	25499	26017	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	25500	26018	GCA_005888265_1_21_43	GCA_005888265_1_21_43	-	41313	.	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam  [Mobilome: prophages, transposons]. 	MAKKATRIKTDTFAVRYQTRDEVEVAIKEIGDLNRELERLAIEQNDKLAAITEEYAPLMNAIKEKLVPKQDAVQAWCESRRDELTQNGKTKTGSFNTGEVQWRQRPPSVGIRGAESVLESLRTLGLVRFIRTKEEVNKEAMLNEPELAATVAGVTIKTGVEDFVITPFEQDI*	mmseqs_cdd	nonviral_gene	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0043	shell	direct	high	518	0.998	GCA_005888265.1_00782
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	26039	26242	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	26040	26243	GCA_005888265_1_21_44	GCA_005888265_1_21_44	-	41313	.	.	hypothetical protein	MKKYLLMIVLLLSACTDVETCNLQCQKERANAEWKQEHSEFQPNLTPEQERYIVEWLVEHYPNGTQP*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0044	shell	direct	high	203	0.995	GCA_005888265.1_00783
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	26242	26694	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	26243	26695	GCA_005888265_1_21_45	GCA_005888265_1_21_45	-	41313	.	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase  [Mobilome: prophages, transposons]. 	MIVEKLTGTRGIVIVDESDHLTYDAIEELRYIQEKAEVGFALIGNDRVYTRMQGGINPAHEHARLWSRLGNRCAIKASEKEDIQSVAAAWQLDTKDKELMKALYDIGTKAGGLRALTQYLRLAGIAAKGQGVAINLDLILQAKMHMQGAI*	mmseqs_cdd	nonviral_gene	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0045	shell	direct	high	452	0.998	GCA_005888265.1_00784
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	26742	27158	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	26743	27159	GCA_005888265_1_21_46	GCA_005888265_1_21_46	-	41313	.	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase  [Mobilome: prophages, transposons]. 	MTLTQQIQQILERKNITQRELSQQIGMSAGALSAYLKGTYAGNIENIENALENWLKNQDKKIRSFIEAPEFIQTPTAERIFNALEMARFATTIVPIYGASSVGKTKACQEFKKQNQNVWMITISPSRASLNAFYMNLP*	mmseqs_cdd	nonviral_gene	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0046	shell	direct	high	416	0.998	GCA_005888265.1_00785
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	27185	29194	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	27186	29195	GCA_005888265_1_21_47	GCA_005888265_1_21_47	-	41313	.	PDB:1BCO_A	Mu-Transposase	MKNWVTAKEIAGIGGLSKHPTNVNRLARKEKWIFREIQGVQGGGYEYSFSSLPLEVQTEYLLKHSEELKVNKENNDSNQQTMIESAWNVLASATFEQEKRAERRFQAVVKVARLVENKIPLMKAFEQVVALYATDSNDETISKGSLKRWWYKVKTHPQGIWLPLLLDRTERDNSCRWADISDKAWAFFCADYLRKSKPKFSVCYYRLTLAAEENDWTIPSLSSLKRKFYNEFTEAEIALARGGEHELRELTAPQIRTVMDLEAYEIVNGDGYQHNVFVDWYEDGRPPIRPKTWFWQDVRTRRILSYCVDDSENGDQIRQATLRMIKQYGIPKTILMDNTRAASDKQTTQQRKRGKRQTAGIKIDGMFDRLGIKVIRTLVFKGRGNGRAKPIERAFKRDSLPAYVDGDARLEAFFTGWSVTEKTEDYQFKKGVNKALFLEILEQGVRLWNDKAGRETELGQGIFSADQLWARDYAQTRQTFATEEQLRQLMMLGESTKVDKHGRFTLKAGYVLNNQKNVYEAQALIGGNVGSVIVRYDPDDLHGTVHIYDQNGVYLCNGECVEKIAFNSEEGARVQKRLINEQRRITKKMVDNHEKLSEHEMAQYRKQFEQSAADFVEPAEKQVFSWTQFADGNTVKTIKLDHELETETEEQNTLSFEQDLFNGLKQVQK*	common_virus_hmm	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0047	shell	direct	high	2009	1.0	GCA_005888265.1_00786
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	29205	29432	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	29206	29433	GCA_005888265_1_21_48	GCA_005888265_1_21_48	-	41313	.	COG3423	Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]. 	MSRNKRSQDMSNHEIRGELMKKGKSLSQLGVENGLAKTTVRNALDKPYPKGERIIAEALGMKPWDIWPSRYLNQD*	mmseqs_cdd	nonviral_gene	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0048	shell	direct	high	227	0.996	GCA_005888265.1_00787
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	29643	30143	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	29644	30144	GCA_005888265_1_21_49	GCA_005888265_1_21_49	+	41313	.	pfam02316	Mu DNA-binding domain. This family consists of MuA-transposase and repressor protein CI. These proteins contain homologous DNA-binding domains at their N-termini which compete for the same DNA site within the Mu bacteriophage genome.	MKSKKEWYLPRDLAGLGDLSPFPSNVTRKAKQEGWIKREAKGIKGGGFEYHYSSLPPAVQQALGFKPNEAKKEPLPAARVGERLKEIDRIMAAISSLEAKVKELEEPTLDSLPDTLDQAEKRLVRWFRQCNKDRQAMLLSSAEVLADMSLKEQKESSEPLENCEVA*	mmseqs_cdd	common_virus	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0049	shell	direct	high	500	0.998	GCA_005888265.1_00788
GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote	cenote	CDS	30140	30283	GCA_005888265.1	LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265.1_LNKS01000021.1	GCA_005888265.1|LNKS01000021.1	GCA_005888265_1_21	GCA_005888265_1_21@C0	30141	30284	GCA_005888265_1_21_50	GCA_005888265_1_21_50	-	41313	.	.	hypothetical protein	MQFKLILSIVHKINLPILTLLYNSFYYQGIVQIHRKDLLGLFIFKNL*	.	hypothetical_protein	C0	30284.0	0	30284	GCA_005888265.1|LNKS01000021.1@region_1_30284@tool_cenote_CDS_0050	shell	ambiguous	low	5	0.035	GCA_005888265.1_00788
GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote	cenote	CDS	1	324	GCA_005888265.1	LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265.1_LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265_1_37	GCA_005888265_1_37	2	325	GCA_005888265_1_37_1	GCA_005888265_1_37_1	-	5758	.	pfam13018	Extended Signal Peptide of Type V secretion system. This conserved domain is called ESPR for Extended Signal Peptide Region. It is present at the N-terminus of the signal peptides of proteins belonging to the Type V secretion systems, including the autotransporters (T5aSS), TpsA exoproteins of the two-partner system (T5bSS) and trimeric autotransporters (TAAs). So far, the ESPR is present only in Gram-negative bacterial proteins originating from the classes Beta- and Gamma-proteobacteria. ESPR severely impairs inner membrane translocation, suggesting that it adopts a particular conformation or it interacts with a cytoplasmic or inner membrane co-factor, prior to exportation. Deletion of ESPR causes mis-folding of the TAAs passenger domain in the periplasm, substantially impairing its translocation across the outer membrane.	MNKIYRLKFSKRLNQLVAVSEITAGHDRHSGCQNAVDTTSSFQMTKWLKLKPLASLISLLSFGFATQTAMANGLQGMEVVSGSASMSINGKSTTITNSPNAIINWKQF	mmseqs_cdd	nonviral_gene	NaN	.	0	5758	GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote	cenote	CDS	691	912	GCA_005888265.1	LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265.1_LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265_1_37	GCA_005888265_1_37	692	913	GCA_005888265_1_37_2	GCA_005888265_1_37_2	-	5758	.	PDB:3FZ2_G	tail-completion-protein	MITQIENALVERLQRGLGRLVNTVKSYGGELDDESLGTSRLPMCLVTFGGARIERMGTNLKRHQSTCLFCKRH*	hallmark_hmm	common_virus	NaN	.	0	5758	GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote_CDS_0002	shell	direct	high	221	0.995	GCA_005888265.1_01152
GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote	cenote	CDS	896	1327	GCA_005888265.1	LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265.1_LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265_1_37	GCA_005888265_1_37	897	1328	GCA_005888265_1_37_3	GCA_005888265_1_37_3	-	5758	.	CDD:cd08053	head-to-tail-adaptor	MHYASAEDFVLRVGEVQAIELTDRDLTGQVNDNLLDVALSDSSSQIDGYLAARYTLPLVSVPQNLVRLCCDLARYRLASMSHVTITEEIITRYKLSLKELEDISMGKISLGLPPTENNDANEHDNGVIFTNPKNRIFARDHSN*	hallmark_hmm	common_virus	NaN	.	0	5758	GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote_CDS_0003	shell	direct	high	431	0.998	GCA_005888265.1_01153
GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote	cenote	CDS	1337	1672	GCA_005888265.1	LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265.1_LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265_1_37	GCA_005888265_1_37	1338	1673	GCA_005888265_1_37_4	GCA_005888265_1_37_4	-	5758	.	PF17891.1	Mu-like prophage FluMu N-terminal domain	MAKKNQKDDVTQDVQTAPDEQAQPQVETSADNAESAVEKYDESDDKEGQVIVPIGYSVKLREIHPQATYGRCGYRFNKESAVEIPVENLTSEQVIMLAEDPWLELIPICEK*	hhsuite_tools	hypothetical_protein	NaN	.	0	5758	GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote_CDS_0004	shell	direct	high	335	0.997	GCA_005888265.1_01154
GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote	cenote	CDS	1708	2628	GCA_005888265.1	LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265.1_LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265_1_37	GCA_005888265_1_37	1709	2629	GCA_005888265_1_37_5	GCA_005888265_1_37_5	-	5758	.	PFAM:PF10124.8	Major-Capsid-protein	MSINKAQVLNHITEAFRKEFIKGLENHPTQWAKIAMEISSTTKTNTYGFLGTFPKMREWVGQRQIQSMQAQGTSITNKKFESTVGIPREDIEDDQVGLYTPMMQLAGQSAAELPDDEVFSLLKKGKSTLCYDGQNFFDTDHPVFEKVDGTGNSTTQVNLTVGTDNDAPTFYIVDARLPIKPLIWQKRTAPEIEPKFDPAKSEHVFMEDEYLWGVRARGAAGFGFWQLIHRVEKTNLTKENVQKVIQTMKGLKGDGGKALNIQPNLILVPTNLEYAAKELFKTKQINGTTNILESELDVLASPFINE*	hallmark_hmm	common_virus	NaN	.	0	5758	GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote_CDS_0005	shell	direct	high	920	0.999	GCA_005888265.1_01155
GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote	cenote	CDS	2628	3563	GCA_005888265.1	LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265.1_LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265_1_37	GCA_005888265_1_37	2629	3564	GCA_005888265_1_37_6	GCA_005888265_1_37_6	-	5758	.	pfam10123	Mu-like prophage I protein. Members of this family of proteins comprise various viral Mu-like prophage I proteins.	MEAWYVTDTNGADVVALANNQRNPLPIDYEHQIIHSLKNGKEAPSAGWMEYFYFTPQGIFADVRWTDKAADYIKNGEYRYISAVFAYDTDGYVRKIFHAALTNTPALDGMDEAMVAASVNLLQEDNPMDKKLLAALCSLFVLKADASEADITEKVTALSAAKGDSPVDVLDVYAKLAEKEQSVAALSTQVGNPDPAKFVPVEQVAALQADFNALKTSVEADKKAALITAALSQGKLAPALKDWAQSLSIEALTGYLDKATPIAALAGGHQANEDPDKGNVAALTAEQQAAAKMLGMNDADYIKKYQSQEAK*	mmseqs_cdd	common_virus	NaN	.	0	5758	GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote_CDS_0006	shell	direct	high	935	0.999	GCA_005888265.1_01156
GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote	cenote	CDS	3505	3858	GCA_005888265.1	LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265.1_LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265_1_37	GCA_005888265_1_37	3506	3859	GCA_005888265_1_37_7	GCA_005888265_1_37_7	-	5758	.	CDD:TIGR01635	phage-virion-morphogenesis-protein	MIDIEINNAQEIASALERLAQATAHRAPLMRSIAGTMESAVLQNFDVGGRPKWLGLKYRQGTPLVDTENLMASITSEYRSYPTFTLWQISRYRRQTNRCGGMVCNRYKWRGCGGVGK*	hallmark_hmm	common_virus	NaN	.	0	5758	GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote_CDS_0007	shell	direct	high	353	0.997	GCA_005888265.1_01157
GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote	cenote	CDS	4001	5317	GCA_005888265.1	LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265.1_LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265_1_37	GCA_005888265_1_37	4002	5318	GCA_005888265_1_37_8	GCA_005888265_1_37_8	-	5758	.	PFAM:PF04233.13	minor-capsid-component	MPSAPKFAIGVEPKQAIEFLRQKKMLASKVLAKEMHDSALARATTIAHLTSLDMTKDIYQSLETAMREGKGFHVWKKELVSEFERKGWIFGKDPSIRGIDGHLLADPKTGEYFGTPRRLNTIYRVNMQSAYSAARYQRLRDNVDNRPYWQYSAVGDARTRPAHLALSGKVYRYDDPFWATFYPPNGFNCRCTVIALGERDLKRRGIDKPDDSSEFLVEVERPADKQGNREKTVGFKLPDGTIRVTDKGFDYNVGRLNYKPNLDLYPEKLAHAFAKVEMKGGEFKHDFELLAKHMAEMKQTLSLDGKKLTADQMLQVRDSLTKNFKFAAGVLSAESKDLLKSKTGTVWLSDDTLIKQFNSRDGQDFGLESYALFPDLFNQPDIVLQDNDRFYFIKNFEKQRILGVIKHLSKFNEIFVLSAREINIKEVEKMKGKLAVIK*	hallmark_hmm	common_virus	NaN	.	0	5758	GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote_CDS_0008	shell	direct	high	1316	0.999	GCA_005888265.1_01158
GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote	cenote	CDS	5301	5756	GCA_005888265.1	LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265.1_LNKS01000037.1	GCA_005888265.1|LNKS01000037.1	GCA_005888265_1_37	GCA_005888265_1_37	5302	5757	GCA_005888265_1_37_9	GCA_005888265_1_37_9	-	5758	.	pfam06074	Protein of unknown function (DUF935). This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu gp29 protein.	LTGIGVQISESWVRDKLGIPEPQEGELILSTPQGEKTEEKTTALSAVLNHGKGCTCGCRAVALSAQNGKKDEQAELDGLIDDALANADFNQQLDPMMKQIVGVVMASESYDEAQEKLIALYPDLTSESHQAYLASAVFLADLLGAANAERT*	mmseqs_cdd	common_virus	NaN	.	0	5758	GCA_005888265.1|LNKS01000037.1@region_1_5758@tool_cenote_CDS_0009	persistent	direct	moderate	420	0.921	GCA_005888265.1_01159
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	58	1023	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	59	1024	GCA_005888265_1_38_1	GCA_005888265_1_38_1	-	183394	.	PDB:5NGD_C	Portal-protein	MGFLDKVKGLLKGNETEPTQTDEAEVTATGRVLDDHPSAKITPSKLKQILEDAENGDIQAQHQLFMDIEEQDSSIAANMMTRKRSVLTLDWRIVEPRNATPAEEKLQAEIDELFYQYPNLEDLFMDLMDAVGHGFSALEIQWAQVDGKWVPKGFKPCPQSWFKLDKDDSLLLRTPANQMGEPLRPFGWVVHRHKSRSTQLARDGLYRTLAWLHMYKHYSVRDFAEFLELYGMPIRIGKYGAGATNAEKRTLLRALAEIGHNAAGIMPESMKIELHNVANAGAASGNNPFLQMVDWCEKSIARLILGQTLTSGRMVKAPLMR*	hallmark_hmm	common_virus	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0001	persistent	direct	high	965	0.999	GCA_005888265.1_01160
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	1103	2752	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	1104	2753	GCA_005888265_1_38_2	GCA_005888265_1_38_2	-	183394	.	PDB:4BIL_D	Large-Terminase	MKNKELLAELKAYSDSLRQKVEAKFEGWDDSLAAISERRKKVLDPVSGYDFFVSNYFPHYVRSRSRSQLHNYLFEQLPQVLQQPSSVHLAIAAPRGEAKSTLVSQLFTLYCLVTQKKRYALIVMDSIDQAYPMLEAIKVELEFNQRLRIDFPEMAGQGRVWQAATIITKANQKVQVAGSGKKLRGLRHGAYRPDLVVLDDIENDEQVRSPEQRDKLHDWLKKTVLPLGAAGDKLDVVYIGTILHYDSVLNRTLSSKAWKTAKFKALIRQPDDMSLWDKWEDFYLNEGEAVADAFYTQNQAAMDKGAVVSWAARPILTLMKIRARDGHATFDSEYQNDPLSSDDAMFANSLTYWTELPANLIYFGALDPSLGKAGASRDPSAILVGGYHRETGKLYVVEAQVKKRLPDLIIEDVIRMQKQYHCQRWFVETVQFQEFLKDELVKRSAQRGIPVPATATKPNTDKMLRIESLQPHTVNGLILLHSSQATLISQLRHFPKADHDDGPDALEMLWRNAVGSSAAIEWIGLDQLDTFDVEDEDDEDDDLYSFWRD*	hallmark_hmm	common_virus	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0002	persistent	direct	high	1649	0.999	GCA_005888265.1_01161
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	2902	3402	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	2903	3403	GCA_005888265_1_38_3	GCA_005888265_1_38_3	-	183394	.	pfam08822	Protein of unknown function (DUF1804). This family of bacterial protein is uncharacterized.	MAHDEKTKADVRRYYVFDCLTLELAAEKAGVSYNTARRWKREAEARGDNWDKVRDANTMASGKVEDVARGMLTAFVLYFENTMDEIKRTEALPVSEKAKLIQGLGDSYSKMVASSKRLLPEVSEMATAIKTITMFGDYIQANKPELINEFADLLEGFGKTLDKEFK*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0003	persistent	direct	high	500	0.998	GCA_005888265.1_01163
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	3404	3670	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	3405	3671	GCA_005888265_1_38_4	GCA_005888265_1_38_4	-	183394	.	.	hypothetical protein	MSARERKRLAQLAEKQEINAKLDEILALSRQANHKIDRLDGRVDDIDTRLAKVEESLAKLGVRAAVIGGLSGLVVSVGFELIKAKFGG*	.	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0004	persistent	direct	high	266	0.996	GCA_005888265.1_01164
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	3670	3927	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	3671	3928	GCA_005888265_1_38_5	GCA_005888265_1_38_5	-	183394	.	PFAM:PF07889.11	lipoprotein	MIDDKVFIGIGTTLIMTLVGWVWKSVNDKVAENEHGIKALEKQMQQDFQSKELAEVKDKHFESILKEVRDQLKEINQKLDKKVDK*	phrogs_hmm	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0005	persistent	direct	high	257	0.996	GCA_005888265.1_01165
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	4051	4308	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	4052	4309	GCA_005888265_1_38_6	GCA_005888265_1_38_6	-	183394	.	PFAM:PF10883.7	Rz-like-spanin	MSMQIILAGLGIFALLGAYVMFKLKQARREIEQLLKTNEQLQMQKAVVETQVKHFEVRKKNEENTRHTSHNDVINRLQQSGDLRD*	phrogs_hmm	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0006	persistent	direct	high	257	0.996	GCA_005888265.1_01166
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	4308	4598	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	4309	4599	GCA_005888265_1_38_7	GCA_005888265_1_38_7	-	183394	.	pfam10841	Protein of unknown function (DUF2644). This family of proteins with unknown function appear to be restricted to Pasteurellaceae.	MNKFFELFTNSDGRASTTGFIQFFGFLVMAGVLIYAVYLDRSTVTDLFFYFACFCGGSAATKGAVMAFQAKQTKLEEQITSETYVEPEQTDRPRGI*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0007	persistent	direct	high	290	0.997	GCA_005888265.1_01167
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	4752	5255	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	4753	5256	GCA_005888265_1_38_8	GCA_005888265_1_38_8	-	183394	.	CDD:COG3926	Lysozyme	MSLTFTQIFNRLIGHEGGYVNDPRDPGGETHWGMTKRTALANGYQGNMRVMTRDQAFKIYYCAFWLRYQCDKMPEAVAYQFFDAAVNHGLGNASRMLQRAVNVADDGIIGNMTIAAIKQMAISDVIMRLNAERLEFYCKLGTFATFGKGWVRRVAGNLKYGAIDNEV*	common_virus_hmm	common_virus	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0008	shell	direct	high	503	0.998	GCA_005888265.1_01168
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	5336	5764	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	5337	5765	GCA_005888265_1_38_9	GCA_005888265_1_38_9	-	183394	.	PFAM:PF08765.10	late-transcriptional-activator	MVESLEDVAELLPETVQQMVDLVGFAAVEKIITNFGGATFRFTDGVHYFPKLKALIGLESAVKLREVFRGEWLYIPRCQTALRVLRNYRFKADYDYLTQHLNKSGRMAMLELCPKYQLSDRSGWEILAQVRHPEETHNLALF*	phrogs_hmm	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0009	shell	direct	high	428	0.998	GCA_005888265.1_01169
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	5876	6292	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	5877	6293	GCA_005888265_1_38_10	GCA_005888265_1_38_10	-	183394	.	COG1598	Predicted nuclease of the RNAse H fold, HicB family [Defense mechanisms]. 	MFYPATFTPAEEGGYVVTFADLPEAITQGDTIEEAQEMAEDVLISCVEIYFDEERPFPLARACDSDETAVFMPDSVYAKVLLHNAMLAENVSKAQLARLTYIRPPEIQRILAPRHTTKIDTIAKALLGLGKQLQLSVV*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0010	shell	direct	high	416	0.998	GCA_005888265.1_01170
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	6347	6523	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	6348	6524	GCA_005888265_1_38_11	GCA_005888265_1_38_11	-	183394	.	pfam07927	HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	MKQSEFLKWLKANGVEVENGSKHLKLYYQGKISHLPRHPAQELKKGLVEGIKKQLGLK*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0011	shell	direct	high	176	0.994	GCA_005888265.1_01171
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	6649	6867	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	6650	6868	GCA_005888265_1_38_12	GCA_005888265_1_38_12	-	183394	.	.	hypothetical protein	MSIGYELEHQFDEIQSSLGGLHCLRQFLEITDNTADTLSYSQLAGMIAVFTAALDCQVSTVRQLVKELPIKA*	.	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0012	shell	direct	high	218	0.995	GCA_005888265.1_01172
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	6878	7519	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	6879	7520	GCA_005888265_1_38_13	GCA_005888265_1_38_13	-	183394	.	COG3561	Phage anti-repressor protein  [Mobilome: prophages, transposons]. 	MTHFNITTFNGSIQNQSVQLINARELHEALKVSTRFQDWIKRRIADYGFTENEDYTCFSNLRSTENTGLNRFWGGQNKIEYHITLDMAKELCMLERSEIGRQARRHFIKMEQHAIALATEMQAQMLAIPTFLRNNPDELARLITTAQTAFLTANPQAKDFLRYREMGLSYREIGTLLGKTKDSVKWMAFKMRNLGFFSSTLPKTTAVQLDLLA*	mmseqs_cdd	common_virus	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0013	shell	direct	high	641	0.998	GCA_005888265.1_01173
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	8056	8259	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	8057	8260	GCA_005888265_1_38_14	GCA_005888265_1_38_14	-	183394	.	pfam04383	KilA-N domain. The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.	MKNQIILANEVIALDEHGRISLNTLHKLSGTGKEKQPALWLRLHGTQELIAELDRSTDLKIAYTAKA*	mmseqs_cdd	common_virus	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0014	shell	direct	high	203	0.995	GCA_005888265.1_01175
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	8286	8684	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	8287	8685	GCA_005888265_1_38_15	GCA_005888265_1_38_15	-	183394	.	COG4382	Mu-like prophage protein gp16  [Mobilome: prophages, transposons]. 	MLRKNLIAKIHIGKSQLGLDDETYRQLLVSTTGKTSCTEMTESELQQVLNVMVQKGFKSSSHFWGNRAAPREDKKIYLAKITALLAKHGLPKEYADGIAKRSFKVDFVHWLQPWQLKKVVQMLAVYDRNRQH*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0015	shell	direct	high	398	0.997	GCA_005888265.1_01176
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	8925	9173	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	8926	9174	GCA_005888265_1_38_16	GCA_005888265_1_38_16	-	183394	.	.	hypothetical protein	MTDQIYEFKQVTDILVLDDKQFERFLADFKEWFHFQKQARAEAEKLKELGLNITLADVIRWKDDDLIGVGSITIDVQKTRDY*	.	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0016	shell	direct	high	248	0.996	GCA_005888265.1_01177
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	9178	9351	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	9179	9352	GCA_005888265_1_38_17	GCA_005888265_1_38_17	-	183394	.	.	hypothetical protein	MSEKKAQVTEQLAQIMEQIEAAKEQWLVDDSKGALLLLQAASREMESVAWRMAPVLG*	.	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0017	shell	direct	high	173	0.994	GCA_005888265.1_01178
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	9348	9512	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	9349	9513	GCA_005888265_1_38_18	GCA_005888265_1_38_18	-	183394	.	.	hypothetical protein	MAKYVARFYCLVEAVVEAENNEQVLELCDLNVCDVNKLPHTITEIDDVVEVEEV*	.	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0018	shell	direct	high	164	0.994	GCA_005888265.1_01179
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	9523	9720	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	9524	9721	GCA_005888265_1_38_19	GCA_005888265_1_38_19	-	183394	.	NF033650	ANR family transcriptional regulator. ANR family transcriptional regulators include the AggR-activated regulator Aar. The name ANR (AraC Negative Regulators) refers to an effect on, rather than homology to, certain AraC family transcriptional regulators.	MNKNIHKFDRFKYYSEQAANSERRGELQDAKAQWAIAELNAPNARNQEWCKHRAAFCDRVLRKPF*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0019	shell	direct	high	197	0.995	GCA_005888265.1_01180
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	9907	10524	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	9908	10525	GCA_005888265_1_38_20	GCA_005888265_1_38_20	-	183394	.	pfam11363	Protein of unknown function (DUF3164). This family of proteins has no known function.	MKQMIEGKEYWRDARGNLTPAELVKDIDKARDVLVREWVEKGVSLNKEMRNFKDGIFGDIQAFIELSAEKYNAKMGGSKGNITLYSYDGKYKIQRAINDHLQFDERIQAAKVLIDACLNEWSEGSRPELKALIERAFNVDKEGNLNTSRILGLRRVDIQDERWQNAMQAISESVQVVSSKAYVRLYERVGESDQYVPIALDVAGV*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0020	shell	direct	high	617	0.998	GCA_005888265.1_01181
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	10525	10716	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	10526	10717	GCA_005888265_1_38_21	GCA_005888265_1_38_21	-	183394	.	PFAM:PF04936.11	host-nuclease-inhibitor	MATRRQIYAVYRGEENLGDGTAEELAKKLNVSEKTIYSSATVARCKRDKGKRLVVIKLDKEEL*	phrogs_hmm	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0021	shell	direct	high	191	0.995	GCA_005888265.1_01182
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	10725	11021	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	10726	11022	GCA_005888265_1_38_22	GCA_005888265_1_38_22	-	183394	.	.	hypothetical protein	MLQPNTTKQLNKNNAVMLAYLEQVEKAVRRLNEMGLTVINVHFEKIRPTVRVMNNAVTEKLEKDQQAYVYHVGRDVGRYQEAQFTVEGIRVVWRKYLN*	.	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0022	shell	direct	high	296	0.997	GCA_005888265.1_01183
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	11033	11782	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	11034	11783	GCA_005888265_1_38_23	GCA_005888265_1_38_23	-	183394	.	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase  [Mobilome: prophages, transposons]. 	MLDDKVAEYLARQDQKILKAHYNSQFVSTLAARKTMDVMQYAHTEGKIVVVYGAAGLGKTATLKEYAARYPSSMLIETDPGYNPRVLLHKIAETCGVVAQGGNHDVFKKIVEKLDGSERLLIIDEAELLSTRSLEFVRRLHDKTQIGVVLAGMPRLLVNLRGKSGEFAQLYSRVNNTHNFGNALPDKDLAMLIESALGTGEFNDAFIKFSKGNARRLSNLMSGVVRLSKLNECDITYEMIEEYNKMLIS*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0023	shell	direct	high	749	0.999	GCA_005888265.1_01184
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	11728	11913	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	11729	11914	GCA_005888265_1_38_24	GCA_005888265_1_38_24	-	183394	.	PFAM:PF10078.8	transcriptional-regulator	MKNKELQRFMTNSGMTQKQIAQALSVSVGTISLYLKDQYAGDVQCLMTRWRSIWLAKIRRF*	phrogs_hmm	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0024	shell	direct	high	185	0.995	GCA_005888265.1_01185
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	11965	12363	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	11966	12364	GCA_005888265_1_38_25	GCA_005888265_1_38_25	-	183394	.	.	hypothetical protein	MKNFIEKERKARAKRRFERAQTLIKRDWSKINDFPVWILTPSGVAPNLASQSMALDMNQGTPSYPSLQNQAHQCFVTKDEADRANRPEIEAAQVDPAQQVEQLASELKSVVQQADRLGQKVVAVSLRVEFAA*	.	hypothetical_protein	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0025	shell	direct	high	398	0.997	GCA_005888265.1_01186
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	12374	14359	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	12375	14360	GCA_005888265_1_38_26	GCA_005888265_1_38_26	-	183394	.	PDB:1BCO_A	Mu-Transposase	MNEISLKTHYPIAELLKLKLLNMPTAHKNALALFERENVEWRKRVGKGGGKEYALSSMPQALQDEIRNKFAVSIVKAKPKSLPADLRQVELKTLTEKQREVAGARMALVAQVAQLEQAQPRYKAIKFFCEQIKHGGISSDLMRLVEIANNKKGKNRTLSDRTLNQWVLDYEKADTPEERLKALAPMQRVAKKAEEIVWLPDFLAIYRQTNGINVAEAYHYFSAEWDARFADEPLRLEMKPSIDQVRAALAKLPKHIKEIGRKTGSELRALNTYVKRDWSVLQVNDVWVGDGHAMKLKVAHPEHGRPFIPEVTLIMDTSCRFIVGWSASLAENVLAVADALRYGVERYGIPAIYYSDNGGGEKNWMLDGDITGMLPRLGIKHQTGIPGNPQGRGIIERVHQTILYKIARQFETYHGTGADKDTVRQVSTAVISLDKAKRKGATQLTPKQQWAVGKLPSWNQFLQACQEGIDEYNNKHEHRELGGMTPAQKRRQLMEKMNPDDLVFVTPVEARDLFRPSTLRVAQRGWLQLFNNYYFSAKLLDVDGQKVQVMFDIHDPSQVIVRKQDGTFVCYAELDGNKRDAFPMPFVEKTRQERYARRAKLKQEQLDEINAELNPIITIEHQPDFAVLVPKVKQKIPAKPIFHNLTEKEEWEAEQAKLVNE*	common_virus_hmm	common_virus	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0026	shell	direct	high	1985	0.999	GCA_005888265.1_01187
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	14403	14681	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	14404	14682	GCA_005888265_1_38_27	GCA_005888265_1_38_27	-	183394	.	COG3423	Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]. 	MSVLSDTKKTAICDWHRADILAALRKNGWSLRSLAEAGNVSYNTLKTALDKPYPKMERLIANAVGVAPEEIWAARSRERIERNRRPVLTNKF*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0027	shell	direct	high	278	0.996	GCA_005888265.1_01188
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	14857	15573	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	14858	15574	GCA_005888265_1_38_28	GCA_005888265_1_38_28	+	183394	.	PDB:2FJR_A	Repressor-protein-CI	MSKPNIYDTGFSERMTKIIEKEGVSINSFAQKLGVSPPTISRWMKGEADPTRSNLIKLAEQTGINIEWLAIGAGPKYWQNPITEEIILRGQPQPIESSNDETFSVIEDCREVRISAGGGGFNDEYKPYQTTKVEKAWLDSRRLKAEDCAMFLVSGDSMYPTLKDGEEIIVDRSKKELKDGKIFVLNNEGAMLVKKVQITYNGITLISQNTEYAPIELNVEQANNLIVIGQVVRGYRDF*	common_virus_hmm	common_virus	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0028	shell	direct	high	716	0.999	GCA_005888265.1_01189
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	16190	16600	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	16191	16601	GCA_005888265_1_38_29	GCA_005888265_1_38_29	+	183394	.	TIGR02085	23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. [Protein synthesis, tRNA and rRNA base modification]	MQEKWGKPIKLTGIEISSSAILAASHSAKILGLEHVNFQSLDAASVIENKNKNKNKNKPDLVIVNPPRRGIGKELSEFLNQIQPHFILYSSCNAMTMGKDLQHLTCYKPLKIQLFDMFPQTSHYEVLVLLERKKIN*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0029	persistent	direct	high	410	0.998	GCA_005888265.1_01190
GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote	cenote	CDS	16965	17639	GCA_005888265.1	LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265.1_LNKS01000038.1	GCA_005888265.1|LNKS01000038.1	GCA_005888265_1_38	GCA_005888265_1_38@C0	16966	17640	GCA_005888265_1_38_30	GCA_005888265_1_38_30	-	183394	.	PRK11753	cAMP-activated global transcriptional regulator CRP. 	MSNELTEIDEVVTSSQEEATQRDPVLDWFLTHCHLHKYPAKSTLIHAGEDATTLYYVIKGSVMVSSKDDEGKEMILTYLGAGQFFGEAGLFDEGSKRSAWVKTKTTCEIAEISYKKYRQLIQANPEILMFLTAQLARRLQNTSRQVTNLAFLDVAGRIAQTLMNLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGAR*	mmseqs_cdd	nonviral_gene	C0	17640.0	0	17640	GCA_005888265.1|LNKS01000038.1@region_1_17640@tool_cenote_CDS_0030	persistent	direct	high	674	0.999	GCA_005888265.1_01191
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	1	311	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	1	312	GCA_005888265_1_57_1	GCA_005888265_1_57_1	-	27510	.	PFAM:PF06992.10	Replication-protein-P	MANSITENQINTLPPERAQRAEETINWLFQELKSIFLGWRAAFETEADYLSAKKTWLRVLVREKITRPQLENGLYKAENSLDKFLPSVGLFVFWCKAYDYHALG	rep_hall_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0001	shell	ambiguous	low	15	0.048	GCA_005888265.1_01663
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	296	1126	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	297	1127	GCA_005888265_1_57_2	GCA_005888265_1_57_2	-	27510	.	PFAM:PF06970.10	replication-initiation-O-like	MHAQAKYIKRILWRYEMSVELMTKAFKSKTGNPLTKLVLVKLADNANDDGVCYPSYKRIAIQCEVSRPTAISHVKKLEAMKYLSIRERKTENGNATNVYILHPENWEEVEPFTSKPALPPLVNELNQPSKPALPPLVNELNPEPSIEPSDNHHIKKTTQKSEAEMLLEQFGITGQLAKDFIAHRKAKKGVINQTQLNRLQKQADKAGISICEAVEICIERNWQGFNASWDWRDEKLRPNSPHLGQSHPNKPKFDDTQTGWSAGMNFTVDGTQWQIP*	phrogs_hmm	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0002	shell	direct	high	830	0.999	GCA_005888265.1_01663
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	1080	1313	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	1081	1314	GCA_005888265_1_57_3	GCA_005888265_1_57_3	-	27510	.	pfam14090	Helix-turn-helix domain. This helix-turn-helix domain is often found in phage proteins and is likely to be DNA-binding.	MENTNPNEKISQSQCDRILRYLQSGKRLTSLEALDKFGCLRLSARILDLKNRGHQISDEFVHDARTGKVYKAYFMAV*	mmseqs_cdd	nonviral_gene	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0003	shell	direct	high	233	0.996	GCA_005888265.1_01664
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	1359	1811	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	1360	1812	GCA_005888265_1_57_4	GCA_005888265_1_57_4	-	27510	.	pfam06892	Phage regulatory protein CII (CP76). This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny.	MNSKDIQRTLHRDCKNASGGITTLALTLGKSPNILGNKLNVECENNHLSFIEALDLIEITNSTRTVAAIADKIDHLIVPMPKCASCCADVVQGFLDITTNAGKIGEQIKSAVHPNSDLGRELSNKEKQTISASIDALIESALCLKWELEQ*	mmseqs_cdd	nonviral_gene	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0004	shell	direct	high	452	0.998	GCA_005888265.1_01665
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	1855	2061	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	1856	2062	GCA_005888265_1_57_5	GCA_005888265_1_57_5	-	27510	.	pfam15943	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	MINKTIKIAIDECGGQAKLAKLCSVAQPTVFAWLHRGGISGKYIPLIAKASNGKVTETDILRSLTKSQ*	mmseqs_cdd	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0005	.	unmatched_CDS	none	0	0	.
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	2195	3163	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	2196	3164	GCA_005888265_1_57_6	GCA_005888265_1_57_6	+	27510	.	PDB:2FJR_A	Repressor-protein-CI	MTTLGERLKFLLIERNVTQAELAEMVGTTQGAISNIVKGETQKPRNILEIANALGVDPNWLKYGSTKMTTLSERLKALLVEKGINQTEFANMIGIAQPSMQKILAGETRNPRKIVEIAKELGTTPDYLLYGDMTVSHSTLENSQINNNQGQTVNNFFDSGSDELREMLQKQQVSLKTKPTEEWVFALDVNRLAETDIINAHFPRPFEALHLSQDGMMDLLKLRSTANVAMITMFNESMSPVINKKDLMFVDTTCKQYAGEGIYLFVMNNELYVRRLYQTPSGVLNVVAENERVGSSFEIDDLSRLNVLGRCVRKFSIIAEDL*	common_virus_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0006	shell	direct	high	968	0.999	GCA_005888265.1_01666
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	3414	3575	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	3415	3576	GCA_005888265_1_57_7	GCA_005888265_1_57_7	+	27510	.	.	hypothetical protein	MIKYTPKHQVKVGGKMSEKDAGIVGNKLANSAIIASIGFAVGFILIGLGYFLK*	.	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0007	shell	direct	high	161	0.994	GCA_005888265.1_01667
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	3586	3912	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	3587	3913	GCA_005888265_1_57_8	GCA_005888265_1_57_8	+	27510	.	PFAM:PF05106.11	holin	MPTKDPTNWESFLRWLPLVFIGLFAGVAKYASDIQAGKLHFSVGLFLCQVLVSMFAGWIGGLICLSSGLDSDLVYVGSGLSGYGGGAVLNAIWRGFFASKLGIKDEQV*	phrogs_hmm	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0008	shell	direct	high	326	0.997	GCA_005888265.1_01668
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	3899	4303	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	3900	4304	GCA_005888265_1_57_9	GCA_005888265_1_57_9	+	27510	.	PDB:2MXZ_A	L-alanyl-D-glutamate-peptidase-endolysin	MSKFKLSAASEEKLVGVHADLVKVVHRAIELSVVDFKVIEGKRTLERQKELFAKKATKTMNSRHLTGHAVDLVPLPVNWNDREPFKTVASAMFQAAKQLGVAIRWGGDWNMNERSDDERFYDGPHFELLRSVYP*	common_virus_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0009	shell	direct	high	404	0.998	GCA_005888265.1_01669
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	4300	4689	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	4301	4690	GCA_005888265_1_57_10	GCA_005888265_1_57_10	+	27510	.	PFAM:PF10828.7	Rz-like-spanin	MTWWLFVIKKLGLNVLSHGCKHFNKVVAVFAGVFILALLYMQHTNKLNIERQSAVIDSLHEKVIKRDKIIDELHEDVDEQRKIAEKRLAQEQLIREQSYAQIQSIKKILESNQCSRATLPSGVAAELRK*	phrogs_hmm	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0010	shell	direct	high	389	0.997	GCA_005888265.1_01670
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	4903	6261	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	4904	6262	GCA_005888265_1_57_11	GCA_005888265_1_57_11	+	27510	.	PDB:1Z6A_A	Helicase-of-the-snf2-family	MMNKDLNIEYISTDVLKPYVNNSRTHSDEQIDQICESIEEFGFTNPILIDENNGIIAGHGRLLAAIKLNLYTVPTIRLTGLSDIQKKAYVIADNSLALNAGWNFELLSLELNELKDLGFDIDLLGFDDDFLKSLDGDLLADISGDSNSKEKLDLKQAFLAPPFSILNSREGWWQDRKRKWKALGIDSGSGRDSGMQRGMNSMARYNSKEDTSMSESDDSIFDPVLCEILYSWFSPKGCQILDPFAGGSVRGIVASKLNRNYIGVDLRAEQIEANLKQRNLVCSNDELQPIWICGDSINIDKLANGVSADLVFSCPPYADLEVYSNNPNDLSNMDYDNFKKAYFEIIKKSCDMLKDNRFACFVVGEVRDKKGNYYNFVGDTIQAFLEAGLSYYNEMILVNVCGTMPMRAATPFKGSRKIGKVHQNVLVFVKGNPKIAAEYCGDVDVYIPNEDN*	rep_hall_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0011	shell	direct	high	1358	0.999	GCA_005888265.1_01671
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	6258	6479	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	6259	6480	GCA_005888265_1_57_12	GCA_005888265_1_57_12	-	27510	.	.	hypothetical protein	MMKKIDVLKDLMAKNEWKKAISLASKFPRLGNAKDAIKSAQMAYTNPNFVRQIKKDPDKLIYQGIQALIAKYG*	.	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0012	shell	direct	high	221	0.995	GCA_005888265.1_01672
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	6537	6905	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	6538	6906	GCA_005888265_1_57_13	GCA_005888265_1_57_13	+	27510	.	PFAM:PF07141.10	Small-Terminase	MSKKKTKPKIEIDLSMVESLAAQGLTNQQIADSLGISERTLQNRKKDNAEFAEAIKKGKAKGIAVVTNALMKKIKSGNVTAMIFFLKTQGGWKENNQLEIEMKKEKKLPTLAELFGDETDPD*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0013	shell	direct	high	368	0.997	GCA_005888265.1_01673
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	6886	8235	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	6887	8236	GCA_005888265_1_57_14	GCA_005888265_1_57_14	+	27510	.	PDB:4IDH_A	Large-Terminase	MRQTLIKPLKPMIKPCRYKILYGGRGSGKSWGVAQLLVEIAVRTKVRVFCGRELQNSMSDSVIKLIADTIEDLGYLEDFEVQRNAIYCLKTGSEFMFYGIKNNPNKIKSLEGIDLVWIEEAENVSNESWDILIPTIRKERSEIWVTFNPKNILDPTYQRFVIAPPKNSFVRKINYDENPYFPETLRLEMEECKERDYELYRHIWLGEPVADSDKVIIKPVWIECAVDAHKKLGFLPAGRKIVGFDVADDGVDSNANAFVHGSVVLRVDEWRGEDVIGSADRTRLNALEFGANEIVYDSIGVGAGVKAHYHRLDDKSIRINGFNAGGAVFEPDAEYVYGKTNRDMFANIKAQAWWCLRDRFYKTYRAITYEEQYPVDEMISLSSDIRDLEYLKAELARPYVDYDGNGRVKVESKKDMKKRGIPSPNKADALIMCFAPKEDVLSRFIGLGS*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0014	shell	direct	high	1349	0.999	GCA_005888265.1_01674
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	8237	9553	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	8238	9554	GCA_005888265_1_57_15	GCA_005888265_1_57_15	+	27510	.	PFAM:PF06381.11	Portal	MEFNQDGYAEALGINHFARNSANSTALFDLTLYELGGLAARVVDMPADAAISRSIEIQGDQDDAISNEIERLKILPALADMVRWSRFFGGAVMVLLTDDGARLSEPLEPSRITRIDEVRVFDLSQISPTANRYSDPTKPNYGRYSSYRLNIGTIAGSLDSQVEIHESRLLFMGGDSLPERLKNGLHWIGRSAVRSVYPKIRDYQKSLMWASLILERKQQAVHKMKGLALAIDNGLEPVIRERINLVERGRSLLNGVAVDSEDDYNILNADLGGIVDVLDEFKVAISADVNIPVAILFGQSAKGMNATGQSDFESYYDLVESIQQHKIKPVLEKLIELLMFQKHIKPFENWKIKFPSLNTPTDKEIADVRKTNADAAKIELDRLINLVDSGALSTDELRTQIAGEFGIQADKLPQVDDDDVEKYQEEQKAKGVVVSSRN*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0015	shell	direct	high	1316	0.999	GCA_005888265.1_01675
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	9534	10751	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	9535	10752	GCA_005888265_1_57_16	GCA_005888265_1_57_16	+	27510	.	PFAM:PF04233.13	Minor-capsid-component	MFPHAIEREYVGYLRGVARNINTMVNQKFVEIRPHFKANIRQDSFSDTLERWLIELLQAVLIFVDEKEITQFVRGYIHQTANFNGKQFHKVLKSVYSVDVFTTEPWLDDALKIAEWENIRLIKSLPTQTLEKLRSRFTQAVRGGWRWESVVDDVKSILNTNEKRATLIARDQIGKLNSHLTKLRQQNIGVKSYIWRGMLDERERAHHVDREGKQFDWDNPPDDGHPGEPILCRCYAEAVFPEFEDLGRDDAEPIDPISTIKTGKMNLDELFDNSLSGGGNKSFSNFGSVGPALVTLAKESIGLDISGWQHSIDESSIRHILKQHGNEKAENKRGQRAVTKADILMLPQIVSSFDSIDYTGTSDAGSETFLLRKEIGDEIFCVQEVRKRHKKIAVKTMWIRKKKKP*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0016	shell	direct	high	1218	1.0	GCA_005888265.1_01676
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	10877	11950	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	10878	11951	GCA_005888265_1_57_17	GCA_005888265_1_57_17	+	27510	.	PFAM:PF09979.8	head-maturation-protease	MVMRYDRRGIQARRDDNGFIYDTPILTRSGVFVYELPNGKTRREYRPPDEVFKADSLRAYKGLPITEDHHGLVTKNNAHLVVGSILTEGKQDGQNLTADIVIHNTKAVDFGKKELSVGYKVDIDETSGTTEDGEPYDVIQRNIRPNHLAIVTVGRAGNAALNLDAADAVEFNEDGENPMSNTQTTLSDIRLDSGITYQAAPEVIVELNKLKQDAKDAVTAKDKEAARADAAEAKVKELETQVEQIKQDAVSQAKVRVELENVAKVHKVEVKADSTDRALREAVIKAIRQDNADLSQKSDGYIEAAFDIAVSDAKQRADAAGVQRQQLTPSATNQPTFTQDSQTKLTGRAAMIASRNQ*	phrogs_hmm	nonviral_gene	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0017	shell	direct	high	1073	0.999	GCA_005888265.1_01677
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	11963	12382	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	11964	12383	GCA_005888265_1_57_18	GCA_005888265_1_57_18	+	27510	.	PFAM:PF11133.7	virion-structural-protein	MSMYDQLQQKAFAGMKGDSRYDLVETFAAENEIPFGVVITQGTSATQAKLGGTKPIGIALHSHAVVGGYAKFDAVSVLRKGVAWCVVKDGETITAGSAVSFDPASGKVAKTGTALPNATFKTAVVDCGKYGKLALVELA*	phrogs_hmm	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0018	shell	direct	high	419	0.998	GCA_005888265.1_01678
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	12444	13391	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	12445	13392	GCA_005888265_1_57_19	GCA_005888265_1_57_19	+	27510	.	PDB:8HDT_C	Major-Capsid-Protein	MTDIRQDAFELNAINTCLNAVGVFNQDAGLFTQRQLEFVRNKIYEEKLPGMNGLSLVPVSSEAPEWAETVTERIYDMVGMAKVIANYADDLPRADVAMTERAVKVKNIGAAYGYNLQELKAAAANQTDLPSSKARAARRAVEVKMNEIALLGDKEFGLNGFINHPNLGETSVTGSWKTATADAVLADLDNLHDTVVLQSKGVHQPTHLLLSLTDYQTLSSKYMNTADKVDVLTFFKRKHPNLTIQGLWELEKAGTGNKNLAICYEKSLDNLTLETPQDFTQLPAQERNLELVVNCVARVGGVFLRYPLSATKAEI*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0019	shell	direct	high	947	0.999	GCA_005888265.1_01679
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	13394	13582	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	13395	13583	GCA_005888265_1_57_20	GCA_005888265_1_57_20	+	27510	.	.	hypothetical protein	MIVRNIEARLIRVGGEFIAPNQEVEIADDAVGLDRLIERGVLIDVTPKAEEPKKDGKSKKQE*	.	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0020	shell	direct	high	188	0.995	GCA_005888265.1_01680
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	13586	13936	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	13587	13937	GCA_005888265_1_57_21	GCA_005888265_1_57_21	+	27510	.	PFAM:PF13262.5	head-to-tail-adaptor	MSAYSLLNLFYPLSQQMPEDIVNKALSVADNKRPDCLSDEKQDEAVAWYAAYLLAQSIESGVNAAGLRREREGDLEREYFSSSDKGGNAERFLAKYNELNNICVRLGAITVGSHCV*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0021	shell	direct	high	350	0.997	GCA_005888265.1_01681
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	13929	14387	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	13930	14388	GCA_005888265_1_57_22	GCA_005888265_1_57_22	+	27510	.	PFAM:PF05069.12	Virion-morphogenesis-family	MSSVVKVKINNKGLEKELELINKIGKARVKVGVQADAGVHSESGESLVDIGIWNEYGTAHIPSRPFIRQTFEDNQQAVAQYLGRVVENVAKGADLVQELSKLGQWYQDKQKKTLKSYPWTPNAPSTRKRKKSSKPLVDTSQLVNSIRYKVEI*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0022	shell	direct	high	458	0.998	GCA_005888265.1_01682
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	14387	14746	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	14388	14747	GCA_005888265_1_57_23	GCA_005888265_1_57_23	+	27510	.	PFAM:PF10665.8	Minor-capsid-protein	MQVFSSQSSFRKPYKILVRSDGEYVKGKWVKGGEIEQMLMASIQPLNGAEMDRLVVSMQGRRVSSAVKIYTDQKLTVAGENAHNGTVVLFDGERYEVISRASYHSGVLSHHRYVAIRVK*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0023	shell	direct	high	359	0.997	GCA_005888265.1_01683
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	14748	15257	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	14749	15258	GCA_005888265_1_57_24	GCA_005888265_1_57_24	+	27510	.	PDB:5A21_G	tail-completion-protein	MLERLYDLLGDLSDRPFIRAYENGREPEKPFFTYELKFERTPEHFHYSAVNDEGNQTVKTHIDAVLELNYFGGNSLQALRDVCMRLSMQSCRERWLNDGVALIRIGRITHLAFLNEQREYEDRAMVEIEIRYAASVQDIVGIIEQVEVTANIGRASEKNLIGVNKNGEN*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0024	shell	direct	high	509	0.998	GCA_005888265.1_01684
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	15244	16317	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	15245	16318	GCA_005888265_1_57_25	GCA_005888265_1_57_25	+	27510	.	PDB:3J9Q_Q	tail-sheath	MAKIDRLVNVAIDLNTTTIAGKSFSDLLILGEHTLNNSARLLVVTDPNELLDLGLKSNNPLYIAVATAFAQPSHVAQVFIGRKAQDESVTDALAAVARENNSWYGLALVSREDSDVMLAAAWAETNGKLFVTASADEKLPQSAEKTDIASKLEAKQYYRSAVMYSHKATEEYPEIALMSYSFTFYPGSETWNLKKLAGVSYSPLMEGEYLACAKKNATTFEKFNDSFAVTQGGKVAAGEWIDIIRFRDWLVQEVQINVTSVLINAYGKVPYTDKGIQLIGAAVRQALDLGVARGGIAPTELDDNNKEIPSYVISLPLAAKVSNNNKGKRLLQDVKFSARLAGAIHLTEIKGNLAYSL*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0025	shell	direct	high	1073	0.999	GCA_005888265.1_01685
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	16363	16788	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	16364	16789	GCA_005888265_1_57_26	GCA_005888265_1_57_26	+	27510	.	PFAM:PF11681.7	virion-structural-protein	MALATYAPDEVSIVIGAVIVSGFADGTFIDIEEMSDGVSSVAGADGEVARATSADPRKKVTLTLLQTSDTNDVLSELYAADKVSKNATFPIAVKDLRGRSLFAASTAWVVKSAKLELGKEVGSREWTLETADGKLFVGGND*	phrogs_hmm	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0026	shell	direct	high	425	0.998	GCA_005888265.1_01686
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	16788	17270	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	16789	17271	GCA_005888265_1_57_27	GCA_005888265_1_57_27	+	27510	.	PFAM:PF10876.7	Tail-assembly-chaperone	MARSEIQIGESTFFVQKFSVMDQLRIFGDLQKTLIPSLAKVIGFSDEKPKDATSAQLAELAQKSAANFAQGLQDLSQQLSGAELVKLADMLIKPELVTVQRDDFNNGTDKKLSKTDFDLVFDDMSELIELVIFILQLNFSSFFTKFLARLGSVQELVKKS*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0027	shell	direct	high	482	0.998	GCA_005888265.1_01687
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	17306	17458	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	17307	17459	GCA_005888265_1_57_28	GCA_005888265_1_57_28	+	27510	.	.	hypothetical protein	MIAWRPFLAGKVTLTELNTAGLTDMGELLKINRLLDAVDAMEAKQMEKNR*	.	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0028	shell	direct	high	152	0.993	GCA_005888265.1_01688
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	17455	19872	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	17456	19873	GCA_005888265_1_57_29	GCA_005888265_1_57_29	+	27510	.	UniProtKB:I6NKY8_9CAUD	Tail-tape-measure-	MNAIRELVTLLRYKVDNSGLKAYVVQTQQAAKGIRSNLNNAVDGLRAKFSEAAVSAKGVGNNLNDAKNQMLSLRNLVAGYFAMIAGGNVIKIADDWAAVDSRVKLATKSAEEHKYALSQIFDLSQRSGQDYLASADLFSKVNRSAGDLGLSLDDTLNLTEIIGQTMTIGGGDQGAQQAALMQLGQALGSGALRGDELNSIIEQAPRLANAIADSFGVPIGQLKDLGKEGKLTSKELAQGLLKQADKIQKEFDQMPKTFGRGMTILKNKAGQLIDVAVNKVSKLGAAFYNAAEWVTENIRLVGFLAGTVIGGKLMFALAAAKKSLRQLLMMGARAVAPYLAMAAAAGVVALVLEDIYGWTQGDLSFTGALVGRYEVWADKFAALGKLADKLWINVRGLLKDLSRMAGVEINFDSWQAFATDVLEYIIAAVRNLINTVSGMVRIIRALINGDYAGAWSSAGDMIDGLSLKFLPLYSVGLMVLGGILSAVWALFSPFRAFFGLLKGGFRSVMFVAKPFIKVAKGIASPFIWAQKHFKLFSRVGSGAFSLLKRAAVKFTVYGLKAFKWLAIKGINGFFGILRAAVKFGMIFKSVVGTVVKGIFAIGRAMFMAVASNPILLAISAVIGLVILLVVYWDEVKAFAIAAWEAISKKAAEIWQSIITGASEMWDNITNKAAESWDNVKKDAVEKWNSVTTMFKNAWQKSIDTVVGWFNSLIPSWIRDLFSDGAKAEVKLSGEALTTPVSGHVSPQRLGYGGRPIFAPNQNMTQTNNFNIQGSANPSGVANAVSDKLSRGSSTSFGMGAIEYAG*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0029	shell	direct	high	2417	1.0	GCA_005888265.1_01689
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	19947	20543	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	19948	20544	GCA_005888265_1_57_30	GCA_005888265_1_57_30	-	27510	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MNTQIQFSTFNFKDLPVRVISDPKGEFWFCGTDVCAILGYTNSRKALQDHCKQGGVTKRYTPTKSADQEMTFINEPNLYRLIIKSRKPEAEPFEAWVFEEVLPQIRKTGKYQLQPQQLALPMVNDDFKQAMAKMVTYASQYANFQQAITSAQLEKQKRLVEFFFSSIPNGDSYLFVFNKNIQQDIQQASDLLHKLITQ*	common_virus_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0030	shell	direct	high	596	0.998	GCA_005888265.1_01690
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	20831	21412	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	20832	21413	GCA_005888265_1_57_31	GCA_005888265_1_57_31	+	27510	.	PFAM:PF06995.10	tail-fiber-protein	MSIVNLLFSALSGKRTTIGVLELDALLTENTSLSSQITEYPIEDGTVISDHITRESERLSLSGVITGAGTLFNVGLGKYKLIAAKETLRELHAKRELVTIVTGLDVYEDFAIESLEIERNSDDGERLNISAEFRKIQKVTLRKEEIPPEKAAPNAKGKAGQTKAKTGKAQTGKPTNTQAQKITKLGEWSGKKQ*	phrogs_hmm	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0031	shell	direct	high	581	0.998	GCA_005888265.1_01692
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	21409	21723	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	21410	21724	GCA_005888265_1_57_32	GCA_005888265_1_57_32	+	27510	.	7KH1_B4	Myoviridae, Phage, Baseplate complex, VIRUS	MITINLANKNDFITEVNLDDEVFFLHFSWNDTIGFWSLTIENTYNDELVSSIVILPNRPLIAPVRRDELPLGELIAVRDDNLQTIGRDDFINGKAVLIYIGVDE*	hhsuite_tools	hypothetical_protein	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0032	shell	direct	high	314	0.997	GCA_005888265.1_01693
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	21720	22682	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	21721	22683	GCA_005888265_1_57_33	GCA_005888265_1_57_33	+	27510	.	PDB:1WRU_A	tail-protein	MSYRFLRSYKLMIGKKGQKDAIVIEPPMRIEFDIEKDCEAEPNENTIKIYNVASTTRKTIEQPDMRCVLYAGYEQEGNVLLCSGDIATAYSYHQGADWVTELYVLDGLVEIRDTAVSLGYGGGVSSTQITNDIAAKMGVTVVGADNLKSRTWANGFSFYGAARKALDKVVAGTGLEWSIQNSELQIVNRNGVTKRSGYVLAKDSGLIGFPERTREAARSKKQDTPNKKQDEKFAFDRQARDGWNVKSLLLPMVNPCDKIKLESVTVTNWFRVEKIKHSGDSHSGDWQSELHLVDLNAPTKEQMKAQSKHRKKRKKKDEQK*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0033	shell	direct	high	962	0.999	GCA_005888265.1_01694
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	22679	23350	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	22680	23351	GCA_005888265_1_57_34	GCA_005888265_1_57_34	+	27510	.	PDB:4RU3_A	phage-baseplate	MTDILTALSEINVSLPGKIVSYDAGTVRATVQPSIPKRLANGEVLNAPQIVNVPVMFPMADINGAVAQVTLPVKVGDGCLLIFSQRSLENWLSGSNDAPDDPRMFDLSDAFCVMGGNSHSPNADVENLCIKYGSGKIKIAPNGNITINSPDVRVTTDNFTVTAPTSTFNGNVIVNGGISTAGDSGSVSVSGSLTTTGDVMADGVSLQSHKHKGDSGGTTGAPL*	common_virus_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0034	shell	direct	high	671	0.999	GCA_005888265.1_01695
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	23347	23712	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	23348	23713	GCA_005888265_1_57_35	GCA_005888265_1_57_35	+	27510	.	PDB:5IV5_BD	Baseplate-wedge-protein	MIDLKLSGQHDLMIKDRKLVLVDGVNQKAQQIKVVLLTFLGEWFLDTTIGLPYFDEILTKNPDNARIQSIFRKKIMGVKGVLAVERLSLEFHLKDRVLAVQFSARTNEGVVKDKVSIKRNG*	common_virus_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0035	shell	direct	high	365	0.997	GCA_005888265.1_01696
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	23705	25141	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	23706	25142	GCA_005888265_1_57_36	GCA_005888265_1_57_36	+	27510	.	PDB:5IV5_GD	Baseplate-wedge-protein	MANYGLTRSGFVRKRMPEQLKELYENAKKMFGEDIDLSPETVMGMMLNIESERFATLWELIESVYSAMYPMSATGANLDRAVSFTGVTRLQAEHSTVPVIFYGNAGVEIPQYTAVRNAATQTLYYSDEDARIDSNQAAYARIELNSNTINVGDVFSVVVNGVTYRFTAMRSSSASIIQGLANQLKAISYADVSNDNVIIEISAQSIPHFSISVSQNLTLSRLGVRCMLSTESPSEDKADIGQMIELVNMIDGVVEVNNVVEGASGRLEESDIELYQRYHRGVWQNGAGTIDSLYANLSKVAGVHSLRIYENDADQTINGIPKRSLYAVVKGGLDTDIASTLLKFKPLGIGTHGQTEVTVRDSQNQPHLIKFSRPTKCYIWLKVTIETFVDEDEIARAGYIVSALNNILKYGKSLGVGADVIHQRLIAACIAVQGVGKVTVQIGKTNNITDPEPRYQEQNITIAPDEEAIFDPSIIVMS*	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0036	shell	direct	high	1436	0.999	GCA_005888265.1_01697
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	25150	25764	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	25151	25765	GCA_005888265_1_57_37	GCA_005888265_1_57_37	+	27510	.	pfam11041	Protein of unknown function (DUF2612). This is a phage protein family expressed from a range of Proteobacteria species. The function is not known.	MKDILTALNDDFKQLGRERLLSQFNYSPNLNAFLSLLLLPHHEIQATLKQMLTERHIDTAIGKQLDGVGDIVGMPRPFARVNGDWYFGFSGQSKAKPFSRAPIRDLATQTNSRDFNYMLDEHYRRLIKWKVIANHSHGTLDDVIEACRAIFLAERVSITEGQDADVHITITRMAKNRLDAVEQEPVLWIPTAAGVKVTVEFINA*	mmseqs_cdd	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0037	shell	direct	high	614	0.998	GCA_005888265.1_01698
GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote	cenote	CDS	25774	27507	GCA_005888265.1	LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265.1_LNKS01000057.1	GCA_005888265.1|LNKS01000057.1	GCA_005888265_1_57	GCA_005888265_1_57@C0	25775	27508	GCA_005888265_1_57_38	GCA_005888265_1_57_38	+	27510	.	PDB:1OCY_A	Tail-fiber	MKLKLIDLFKRITWAKNGDLTDFSQTNYEAGWAHLGDDTPTVQDFNYVQQMNDKKDQWLFNQLKAVLEKANIEPTEENVNSLRDAILALSKGYSHPKSLTADTVNFVDEQGHTHEIAKATLQQQGITQLYTGYNSQREDLALTPKTAYQLKQLIDSNTRSLDNVIPNSKKSSAVNSNSADTVANSAAVKTAYDKAVEAKTTAESKVGLRGNESIQGTKSFESKIIGFRGIGVADSQTYANANHLLNMGANDGDGWIEYKKSNRVIGTIRIRANGELSYNNQKIYHAGAKPQFNTDIEGKPNTLAGYGIGNFKVEEFRGNLNTLKTDGIYAITQASRSQNLPVSTSCHIQVIAGGDGAWCRQLAYVAYSTDVYERHQTSYQTDSWSAWKKLNTDGIPIGAVVSFPRAVTNPVGFLKASGSTFNQQTFPDLYRVLGNSNKLPDLTRSDVGMTAYFAVDNIPTGWIAFDSIRTTVTQQNYPELYRYLVGKYGSISNVPLAEDRFIRNASNNLSVGETQSDEIKKHVHKVRTHWVNSSDSNIFYDKTKTVIDSRLRTATTTDDNLSDNGFMHPLLDSPMATG	hallmark_hmm	common_virus	C0	27511.0	0	27511	GCA_005888265.1|LNKS01000057.1@region_1_27511@tool_cenote_CDS_0038	.	unmatched_CDS	none	0	0	.
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	640	1074	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	641	1075	GCA_005888265_1_60_1	GCA_005888265_1_60_1	-	42453	.	PDB:1Z9F_A	Single-stranded-DNA-binding-protein	MARNTNTVILVGHLGSDPEIRQFQNGGQIATFNLAIGDDYRDKQGNTVKRTHWIPIVVHGNSADVARQYLQKGSKICVTGKLVQESWLDQNGNNRTALKVATQSFEMLDSKVSNETQQPSKDKEKPDPLSAAAEQDGFDDDIPF*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0001	persistent	direct	high	434	0.998	GCA_005888265.1_01714
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	1074	1718	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	1075	1719	GCA_005888265_1_60_2	GCA_005888265_1_60_2	-	42453	.	PDB:3SZ4_A	Exonuclease	MYQLKARCSGLADLMVKPKSGNGISATAKSAVRKIVKFDLFGYQDFEGNKYTEKGIALEEQAIKLSGRKRGLPLKKNTERRENDWITGECDIYVPSRKLIIDTKCSWDIGSHPFFADEAEEKAKKAGYDAQMQGYMWLWDCDEAHIDFILLPTPYDQLSSYDDPSRYIDLVEQIPQEKRITTVTIKRDEKIIEKIKERVEIAQEYYQQLIQEMH*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0002	persistent	direct	high	644	0.998	GCA_005888265.1_01715
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	1927	2610	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	1928	2611	GCA_005888265_1_60_3	GCA_005888265_1_60_3	-	42453	.	pfam10548	P22AR C-terminal domain. This domain was identified by Iyer and colleagues. It is found associated with pfam10547.	MTNLTILNNSIRSYGNLYSLNDLHQASGGLDKHSPFRFMRNESTQELISEMKNEMNTKSGVQKEAQGSDLIFKTLRGRNIQGTWVCEELVLSYAMWISPKFHLIVLRAFLAMHRNQPQQLALPEPEKKYTREFTEHDLQQLVWAWFALLRGTELCQVLHPALKQIGSHYAASVYSMAYEYRSTLRHAHNVLTRITEQFECEQGNNWRVLKYLRAYNPKATGFQLDIL*	mmseqs_cdd	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0003	shell	direct	high	683	0.999	GCA_005888265.1_01717
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	3151	3324	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	3152	3325	GCA_005888265_1_60_4	GCA_005888265_1_60_4	+	42453	.	PFAM:PF16777.4	transcriptional-regulator	MAMTKKEIQDRSDKKRGVRMVGFKLKEDIIQQLNALSERTGKSKTALIEEMILNYQG*	phrogs_hmm	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0004	shell	direct	moderate	167	0.96	GCA_005888265.1_01719
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	3538	4050	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	3539	4051	GCA_005888265_1_60_5	GCA_005888265_1_60_5	-	42453	.	PF15956.5	Domain of unknown function (DUF4760)	MDLNVIAGLGTCLFTGYLALFAWSQLKEQRKQHKQKATIELLINNNSNSYYRRRRQVYMKMRDQGTNFTSLACALSPNCSSDNEIKRQNFIVLDVLNSIEFICVGIKENLFDEAVYKRMSKSSVIKDWQTLKPYIMELRRINNNNTKLFCEFEWLATKWEQEKRKANNHC*	hhsuite_tools	nonviral_gene	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0005	shell	direct	high	512	0.998	GCA_005888265.1_01721
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	4267	5073	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	4268	5074	GCA_005888265_1_60_6	GCA_005888265_1_60_6	-	42453	.	.	hypothetical protein	MRTTKAELLELKQETESELEKLKLANELYQRNKKQAEEIEQWHKQADSITDDLIEWHKLGADRSKSIELLSKQSEIDKPKLERYKQEIEEMIALFKKQKQDIQDIIDDANRASMAGSFKTQSDDINRKMKWADGFLIGSLLATAGISYWGFYTSFNAENLFLWGQFVAKATISLPLLIVAWIKAKERAYLFRMREDYAYKYSAAMAFEGYKKQIQEQDPELQQQLLQIAIDNLGKNPTSVFDKELQSTPLETIIEGVGKRIDQAIAKN*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0006	shell	direct	high	806	0.999	GCA_005888265.1_01722
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	5193	5327	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	5194	5328	GCA_005888265_1_60_7	GCA_005888265_1_60_7	-	42453	.	.	hypothetical protein	MYLDKSDIAIRIIEIGRAVLLGYFAGVNRGKAQILEQQNRSKED*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0007	shell	direct	high	134	0.993	GCA_005888265.1_01723
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	5501	5602	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	5502	5603	GCA_005888265_1_60_8	GCA_005888265_1_60_8	-	42453	.	.	hypothetical protein	MSSENFPQEIENRDEFIKEFFAIQQQEVAVKRD*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0008	shell	direct	high	101	0.99	GCA_005888265.1_01724
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	5909	6853	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	5910	6854	GCA_005888265_1_60_9	GCA_005888265_1_60_9	-	42453	.	PFAM:PF03837.13	RecT-protein	MTNQVQHQQNKQPPALKTFFESANVQNKIKELVGKNAATFATSVMQIANSNAMLKTADPMSIFNAACMAATLNLPLQNGLGFAYIVPFRNNKEKKTKAQFQIGYKGFIQLAQRSGQFKRLVALPVYKKQLIKKDFINGFEFDWEQEPEEAELPIGYYAYFKLMNEFSAELYMTHEEINAHAKKYSQTYRTYLDKKAKGQWAESVWAENFEAMALKTVIKRLLSKQAPLSVEMQQAVLADQAVVKDVENQEFNYTDNIQEAEFLAVVDEATFEQCKQSITNGETTLQELCDSGAYEFSQEQIAELEKVEKANLTQ*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0009	persistent	direct	high	944	0.999	GCA_005888265.1_01726
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	6866	7159	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	6867	7160	GCA_005888265_1_60_10	GCA_005888265_1_60_10	-	42453	.	.	hypothetical protein	MKPYADYYAQLNAAHQGKVDWQAGYEIALDEVATEIDNDLQQGDQTHYHELTEMLCDNDNFWLAIGSGASYEPYRQEAIKKIAERELNDRMNDYDPD*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0010	persistent	direct	high	293	0.997	GCA_005888265.1_01727
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	7156	7503	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	7157	7504	GCA_005888265_1_60_11	GCA_005888265_1_60_11	-	42453	.	.	hypothetical protein	MKHSKTPLRQEKQSFTHFMKGSEKWLTRISYFLAALVISLIVGGISLDADANPTDWHDNELSLQIQQEAREKAKAQWREENGIYQANLTPQVNADIYRYVEQKQAEINRTLGEKQ*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0011	shell	direct	high	347	0.997	GCA_005888265.1_01728
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	7587	8225	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	7588	8226	GCA_005888265_1_60_12	GCA_005888265_1_60_12	-	42453	.	PFAM:PF04383.12	KilA-protein	MSNLAILNTSIRSHENLFSLNDLHVASGGKDKHRPSFFIRLDTTKDLIAEIEQDNSNALKVIRGTQGGTYACEELVIAYAMWISPKFHLIVLRAFLAMHRNQPQQLALPEPQKFTFEFIEHDLQQLVWAWFALLRGMELCQILHPALKQIGSHYAASVYSMAYEYRSTLRHAHNVLTRITEQFECEQGNNWRVLKHLRAYNPKATGFQLDIL*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0012	shell	direct	high	638	0.998	GCA_005888265.1_01729
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	8535	8627	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	8536	8628	GCA_005888265_1_60_13	GCA_005888265_1_60_13	-	42453	.	.	hypothetical protein	MAENKPNAKELKRQAMLASRLAYQKARNQS*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0013	shell	direct	moderate	92	0.989	GCA_005888265.1_01730
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	8841	9122	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	8842	9123	GCA_005888265_1_60_14	GCA_005888265_1_60_14	-	42453	.	.	hypothetical protein	MTELFIESEYHSIPHQFAEFRVANVDYIIDFSSDNDVIESLFSLDERLVPLLKNRKTYSVKFGIKEYYESTDPNIDLYAPPLNHQLKKQIFNT*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0014	shell	direct	high	281	0.996	GCA_005888265.1_01731
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	9999	10943	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	10000	10944	GCA_005888265_1_60_15	GCA_005888265_1_60_15	-	42453	.	.	hypothetical protein	MVLNEQELSITFPQNLYYSTTKPLHIDDVIKSLRGLNALVKSTKPTLNTLFDVDIHNIELYVKSIEEGSLLEETFIKLFFNSQDEYNAFLQQIHNKFGDKAMKTTGAIILAVVSCFTIYGVYKAATAGSDNGTIAIDSYNTINNYYVDSSVWKQGAELAKMEPEEFKKTIEQNVRNRKAVAQNSLDVMYPVKDDDNAELFIGLDHKAELPIMPKDIAQATPHGRIEFASIEDVVDYDDIDIKIRALDLDNPKKGWAGIIPNIIDYRVKIEIANGVNTTKLKINKTIRADVSVEMKKDSSTGDLKATKIIIHKLR*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0015	shell	direct	high	944	0.999	GCA_005888265.1_01732
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	11075	11767	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	11076	11768	GCA_005888265_1_60_16	GCA_005888265_1_60_16	-	42453	.	PDB:2FJR_A	Repressor-protein-CI	MSSLANRLKIARKAAGLTQDQLGKLVGVSQNAIQKIEAGGETKYTLALASVLGVDPIWLQSGEGKTPEKTTALSTELVTTQRDNEHRHRIDYLDVYLAAGISGIENSDYPEIISTLFLSDEGMARLVGKRSSQGVSIVNVPTDSMEPTIRKGDIVFIDTTINCYIGDGIYAFSINGELYIKRIQKLMSGGYRMISDNQAYPSEIISDEIYASAQFVGKFIRTVHIDVMNL*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0016	shell	direct	high	692	0.999	GCA_005888265.1_01733
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	11873	12121	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	11874	12122	GCA_005888265_1_60_17	GCA_005888265_1_60_17	+	42453	.	pfam15943	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	MVVFIYCEKYKAMNEFVQKAIDTLGKQQILAEACGVSQNAVSKWLNGGAISLENALRIEKATQGKVKAEDISPEFSHLLSRT*	mmseqs_cdd	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0017	shell	direct	high	248	0.996	GCA_005888265.1_01734
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	12142	12438	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	12143	12439	GCA_005888265_1_60_18	GCA_005888265_1_60_18	+	42453	.	PFAM:PF10078.8	CII-like-regulator	MARNKLTRSARVLSDQVIEKYYKQKQYEVAEGMETTPSTLSRFISNEEFTQTFNFIAACQFGVFDTDTHIAIEKSEFEMLLLASQGFDQRLREKYLGK*	phrogs_hmm	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0018	shell	direct	high	296	0.997	GCA_005888265.1_01735
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	12486	13154	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	12487	13155	GCA_005888265_1_60_19	GCA_005888265_1_60_19	+	42453	.	COG3645	Phage antirepressor protein YoqD, KilAC domain [Mobilome: prophages, transposons]. 	MNQLLTITKENASILTMSSREIAEITHKEHKNVLRVIRDLIEQNLVAQIEPLKFEYRNQWFDYYELNKRDTFVVVARLSPEFTAAVVDRWQALENRQKPTALIPQSFSEALMLAAQLQAEKERNAPKVAFVDHYVEVGTSKSFRETAKILKMPERALVNRLVEDKYLYRQSGVLLPYQSAHTKDLFTVKTGTAEHGHNYTQTRVTSKGIEFIASRYASELML*	mmseqs_cdd	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0019	persistent	direct	high	668	0.999	GCA_005888265.1_01736
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	13151	13909	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	13152	13910	GCA_005888265_1_60_20	GCA_005888265_1_60_20	+	42453	.	pfam13730	Helix-turn-helix domain. 	MSMRLMVQAMNCKVGNPARKLVLLKLADNANDDGICFPSYQYIADKCEMTRRSAISHIECLIKMGLVSKKERKNKDGSISNLYFLHLEQGSENFALGGENISLGSEKFALGGSENISPITSHSLEPVNEPKKTTQKSESEMLLERFGITGQLAKDFIAHRKTKRGAISETQLSRLQKQADKAGISICEVVEICIERNWQGFNAAWDWRDEKLRPNSPHLGQSHPNKPKFDDTQTGWSAGMNFTVDGTQWQIP*	mmseqs_cdd	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0020	persistent	direct	high	758	0.999	GCA_005888265.1_01737
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	13894	14535	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	13895	14536	GCA_005888265_1_60_21	GCA_005888265_1_60_21	+	42453	.	PFAM:PF06992.10	Replication-protein-P	MANSITQNQINTLPPERAQRAEETINWLFNELKSIFPGWRAAFETEADYLSAKKTWLRVLVREKITRPQLENGLCEAEKSLDKFLPSVGLFVYWCKAYDYHALGLPNEAELYQRYNTFLGYARFNRDEFQYRSKVEFWLLKNLYEKCKKKSEEDTLKAIPKLLTKAAEKVRSNFPFEDIPKMIPTKPRFYDKAKADKARDSLMAMMKGKGALQ*	rep_hall_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0021	shell	direct	high	641	0.998	GCA_005888265.1_01738
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	14532	14756	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	14533	14757	GCA_005888265_1_60_22	GCA_005888265_1_60_22	+	42453	.	.	hypothetical protein	MTSYKCPKCGAELEDFYTPDYFISSSEWEDDRFRCNGHLIEPIPFPQVSKYSAVNRTKSCGYFGLEDLGVEYKE*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0022	persistent	direct	high	224	0.996	GCA_005888265.1_01739
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	14793	15209	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	14794	15210	GCA_005888265_1_60_23	GCA_005888265_1_60_23	+	42453	.	pfam05772	NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	MSQYKPFFLRDQRIKNNCLDLIKELPIDDKKPLVVKIQPITRSLGQNSKLHALLSDISKQCEFNGKKRDIDTWKMIMVSAHKIATGGQAEMVIGLEGEVINLRESTAQMSVKRLASLIEYITSWGVQNGVRFNDRWGL*	mmseqs_cdd	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0023	shell	direct	high	416	0.998	GCA_005888265.1_01740
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	15302	15844	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	15303	15845	GCA_005888265_1_60_24	GCA_005888265_1_60_24	+	42453	.	PFAM:PF05766.11	NinG-recombination-protein	MAKEYKCKVCAQPFVKTFSSTQKVCSPECAIKLARDNAQKAQERAEKKKQRERKDKLKSRSEWLKEAQSVFNKFIRLRDKDQPCISCGRYHQGKYDAGHYRSVGACPELRFCELNVHKQCAPCNDHKSGNIIEYRINLVNKIGADKVAWLERQDHEPKKYTIEDCKAMIKYYKAKIKELT*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0024	shell	direct	high	542	0.998	GCA_005888265.1_01741
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	15841	16212	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	15842	16213	GCA_005888265_1_60_25	GCA_005888265_1_60_25	+	42453	.	PFAM:PF06530.11	anti-termination-protein-Q-like	MNIDVISVEFGYWATPRYETEFPRVAAGFAEMKCDARYAEKYRMRPISDELGMEIDGYLGVIRKVTPELYDVFVLTYIKRWEKQEIWRYLHISRREYFNRLKTVKTSLLLLLSTEGKQCLFIA*	phrogs_hmm	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0025	shell	direct	high	371	0.997	GCA_005888265.1_01742
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	16312	16494	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	16313	16495	GCA_005888265_1_60_26	GCA_005888265_1_60_26	+	42453	.	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only]. 	MHSGGLIKELKANGCYFVRHGKGDHQIWFSPKTGKRFPVPHPKQDLAIGTLKSIKKSAGL*	mmseqs_cdd	nonviral_gene	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0026	shell	direct	high	182	0.995	GCA_005888265.1_01743
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	16526	16975	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	16527	16976	GCA_005888265_1_60_27	GCA_005888265_1_60_27	+	42453	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MIFTVGVETPENENQAYGMIVPALCQLDYGCFSGADDVDDLLPMVTEAITMMLEAMVEDGFDLTTLKDKGVTHYKADPEYAYFDTWLLVDVDISEYLGKKQRINVSLPEYLLTRIDRRVAAMGNYYKDRSHFLANAAHRELHAHSNKEM*	mmseqs_cdd	nonviral_gene	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0027	shell	direct	high	449	0.998	GCA_005888265.1_01744
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	17020	17202	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	17021	17203	GCA_005888265_1_60_28	GCA_005888265_1_60_28	-	42453	.	PFAM:PF16777.4	transcriptional-regulator	MAMTRAEINAKSDKKRSVRLQSYKLHEDIIKLLAELSEKTGKSKTAIVTEGILAMEKAYK*	phrogs_hmm	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0028	shell	direct	high	182	0.995	GCA_005888265.1_01745
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	17451	17678	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	17452	17679	GCA_005888265_1_60_29	GCA_005888265_1_60_29	-	42453	.	.	hypothetical protein	MAIKLNENTNFTHKKTAMLSGADFRFVLRLRALIKIIMKNPLGCQGAFCNYSLLILGVRLWITTTKYDKKTCVDL*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0029	.	unmatched_CDS	none	0	0	.
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	17840	18739	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	17841	18740	GCA_005888265_1_60_30	GCA_005888265_1_60_30	+	42453	.	PFAM:PF10547.8	P22_AR-repressor-domain-protein	MTNQISTQTVSFNNQSLITIEQNGVHYVAMKPICENIGLAWEPQVLRIKRDEVLSQGMIVMIMVAEDGKKREMICLPIEYLNGWLFGIDINRCKPEIRGTLIKYKKECYQALHDYWFNGKAERKTTVDDRTGLRNAVNMLVSKKGLIYSEAYHLIHQRFNVESIEDLTLEQLPEAVEYVHRIILEGELITEAELPNREKKYTREFTEHDLQQLVWAWFALLRGTELCQVLHPALKQIGSHYAASVYSMAYEYRSTLRHAHNVLTRITEQFECEQGNNWRVLKHLRAYNPKATGFQLDIL*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0030	shell	direct	high	899	0.999	GCA_005888265.1_01747
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	19357	19530	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	19358	19531	GCA_005888265_1_60_31	GCA_005888265_1_60_31	+	42453	.	.	hypothetical protein	MIKYNRTKLKIHPKEGLNMETYSTPVIRGAIAFAIVALAVGICLLFATPFISAVRWW*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0031	shell	direct	high	173	0.994	GCA_005888265.1_01750
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	19726	20082	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	19727	20083	GCA_005888265_1_60_32	GCA_005888265_1_60_32	+	42453	.	TIGR01594	phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda. [Mobile and extrachromosomal element functions, Prophage functions]	MPIKEPDVWALIWSWLQTNLSSSSAQSAFWALFISLLRFGFMRKKPAIRYVLIDAAMCASIAGVAVPICTHLFGHTEYSSFLGTMIGFVGTEKIREFLFKFINRRIEKDDNDDFRRDI*	mmseqs_cdd	nonviral_gene	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0032	persistent	direct	high	356	0.997	GCA_005888265.1_01752
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	20060	20653	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	20061	20654	GCA_005888265_1_60_33	GCA_005888265_1_60_33	+	42453	.	PDB:3WH1_A	Chitinase-	MISEETFNKIFPHAVKGVYQAISTQIEKAGCVNKMQQAMFLAQCGHESGGFTRFKENLNYSWLGLSKTFRKYFPDPLIAKKYERKPELIANRVYANRLGNGDEKSGDGWKYRGRGLIQITGKDNYAAFRKWLGRDIEPEDVAGNLDLSVKTAVWYWKCYELAELNSVEKVTRRINGGLNGIDERCKLYRALMVTDND*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0033	persistent	direct	high	594	1.0	GCA_005888265.1_01753
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	20646	20969	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	20647	20970	GCA_005888265_1_60_34	GCA_005888265_1_60_34	+	42453	.	pfam10828	Protein of unknown function (DUF2570). This is a family of proteins with unknown function.	MTKYIYIALGAVVVVLIGVLRYQSSVIDELEITTKQQENTIQQQEDANKSLSLALQQERYAIIEQQERNNEIERIATENAESVKTIIKTQPCAHTRLPQSVLDRLHE*	mmseqs_cdd	nonviral_gene	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0034	persistent	direct	high	323	0.997	GCA_005888265.1_01754
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	20920	21162	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	20921	21163	GCA_005888265_1_60_35	GCA_005888265_1_60_35	+	42453	.	PDB:5CYB_A	Lipoprotein	MLTLVCLSLFLTACTNKITTKPEYIYPLQAYTAPCVKTAFTGETYGDVVIQLVKVTAERDKCASQVDHLNKWINQAKGGK*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0035	persistent	ambiguous	low	51	0.21	GCA_005888265.1_01754
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	21164	21541	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	21165	21542	GCA_005888265_1_60_36	GCA_005888265_1_60_36	-	42453	.	COG1396	Transcriptional regulator, contains XRE-family HTH domain [Transcription]. 	MFLLKRLKKEMNALTNIQYINNEQGVPAFAVMPIATLNWLKEKANFSDPIETGIPESVAKLALLNDYSALRAWREHLGLTQAEVASRLGISQAAYSQHENSQTLRKSTRIKIATALGINSAQLDF*	mmseqs_cdd	nonviral_gene	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0036	persistent	direct	moderate	348	0.921	GCA_005888265.1_01755
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	21809	22324	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	21810	22325	GCA_005888265_1_60_37	GCA_005888265_1_60_37	+	42453	.	PFAM:PF03592.15	Terminase-small-subunit	MSDVKGKSTSGRGLTPKQEKFCQLYIELGNASEAYRQSYDCSKMTTEVINVKASELLNKNGKITVRVEELRQAHQQRHNLTLDNIIADLQEYRDICMGRKPLTITTVVKNAQEGTAQSVNTECFVFEPTGANKALELLGKHLGMFTNKVDVTTDGKPLPTVINVTFSDEPA*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0037	persistent	direct	high	515	0.998	GCA_005888265.1_01756
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	22311	23654	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	22312	23655	GCA_005888265_1_60_38	GCA_005888265_1_60_38	+	42453	.	PDB:4IDH_A	Large-Terminase	MSQLNIQFPTKFRPLFESIWRFIIFYGGRGSGKSFSIARALVLRAYQSPVRVLCCREIQKSISDSVIQMLADQIEMLGLQAFFDVQKTQIIGQNGSRFTFAGLKTNITSIKSMTGIDVVWVEEGENVSKESWDILIPTIREDGSQIIVSFNPKNILDDTYQRFVIHPPERCKSVLVNWQDNPYFPKELMEDMEQMRERDYELYRHVYEGEPVADSDLAIIKPVWIESAVDAHLKLGFTTKGMKKVGFDVADEGADANANAFVHGSVVLGVEVWKNGDVIDSANRTNQSAVKFKADLIIFDSIGVGAGVKAHFKRLPKSLQVEGFNAGGAVAYPEREYIKDKKNQDMFSNIKAQSWWALRDRFYKTYRAVKYGDVYPDDELISLSSKIKELEYLKAELSRPRVDYDNNGRVKVESKKDMKKRGIPSPNMADALVMCYAPTKPKSLLDL*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0038	persistent	direct	high	1343	0.999	GCA_005888265.1_01757
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	23656	24987	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	23657	24988	GCA_005888265_1_60_39	GCA_005888265_1_60_39	+	42453	.	PDB:8HDS_J	Portal-Protein	MNILDGIKSLALKLGSKQDQTYYARGLSLTDDLMQIEALWRDNWIANKVCIKRSEDMVRNWRDIFSNDLKSEQLDEFTKLERRLKLRETLTKALQWSSLYGAVGLLVVTDTINITSPLQPTERLKRLIILPKWKISPTGQRDDDVFSPNFGRYSEYTIIGGTQSVLVHHSRLLIINANDAPLSDNDVWGVSDLEKIIDVLKRFDSASANVGDLIFESKIDIFKIAGLSDKISAGLENDVAHVISAVQSIKSATNSLLLDAENEYDRKELSFGGLKDLLTEFRNAVAGAADMPVTILFGQSVSGLASGDEDIQNYHESIHRLQETRLRPVLEVLDTLLCNELFGGQPDDWWFEFLPLTVVKQEQQVNMLNTFATAANTLIQNGVVNEYQVANELRESGLFANISADDIEEMKNADELARNFEEPEGESTQVQASEDEQENGALV*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0039	persistent	direct	high	1331	0.999	GCA_005888265.1_01758
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	25016	26449	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	25017	26450	GCA_005888265_1_60_40	GCA_005888265_1_60_40	+	42453	.	PFAM:PF04233.13	Minor-capsid-component	MTDDVERALQQPQGSFFMDDAKGFQAISAKALMKVLEKYEKSDRTSQAENIANGFVGRGDAQNHAEVSTNLKNQTGIDLSAYLRNSPNIAERVNALTAGNIQLIKSIRSQYLDKVQNAVMQAMVRGSLNKDLTAQIKDLGKTTEKRAMFIARDQSSKLNAALTQARHEEVGIKKYMWSASLDERVRESHAEKDGQIFEYSNPPADTGHPGHDFNCRCVQIPVLDNNEQIVKNSPIVSQQEKQQMRSEWSDDFPDTIIDRKLGDATSHPLYENAKKGSIEDAYQLAKDLVTDDAVNKLKQLVGNKNAILIPVHAEEAVGQNMIPVAIATVLSKKLHIPVDLSIVQATKVSRTGGDGWHRLVYSPAFDGIVPKDKYAIILDDTQTQGGTLASLKGYIEENKGKVIASYALTGKQYSVQLRLSKDTLAELRSKYGELESWWKKEFGYDFSRFTEWEARFIINSRKTPDEVRNTILARKQA*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0040	persistent	direct	high	1433	0.999	GCA_005888265.1_01759
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	26728	27084	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	26729	27085	GCA_005888265_1_60_41	GCA_005888265_1_60_41	+	42453	.	pfam10711	Hypothetical protein (DUF2513). This family is found in bacteria. The function is not known.	MKRNWDLIRSILLKLESQSEARGSLLPDGFTGFDSETVSYHFKLLQSAELIEAIDYSSLNEMSLIARSLTWQGHELLDKIRNDTVWNSLKTTIKSKSLDLSLDTIKQVAQTIISQMLA*	mmseqs_cdd	nonviral_gene	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0041	persistent	direct	high	356	0.997	GCA_005888265.1_01760
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	27146	28246	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	27147	28247	GCA_005888265_1_60_42	GCA_005888265_1_60_42	+	42453	.	PFAM:PF09979.8	head-maturation-protease	MKFTDKTTQAVTQRTITKDGFLVVPATISKVGVFDYLATELGLKEDGIKKVARTEKSLFSDETIKSFENATLTVGHPKDGVNAKNWKQLSVGVVRNVKRVGDELTAEAWIYDEQAIKTVQEHGVEQLSCGYDCDIKPSTVQDADFEMSPMIGNHVAIVAKGRCGGSVKLADEDKTIMGKTAKILDAFLGAFGIKLSDEQKKQIEDEEKSGSEEGKEPKGEQPTEPKEKQSKPEDKKDEEVNKEEFEKQLKAKDAEIQQLKDAQAKRDAEVKQAAVLADAKTAFKEVNFADNATVREIQESAVVAQGIFTKDEAAKLSDEEISGAYQTAKAVVAKLADERKSLGSILLGDAESKAAPKIDFNKTYNS*	phrogs_hmm	nonviral_gene	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0042	persistent	direct	high	1100	0.999	GCA_005888265.1_01761
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	28259	28699	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	28260	28700	GCA_005888265_1_60_43	GCA_005888265_1_60_43	+	42453	.	PFAM:PF11133.7	virion-structural-protein	MSYAYEQAPARAGELGKGNLASAKTTAEKVTGKVKAGEFVALNPTGGVKALSAKKDILAGVVLASRIRDEWPEGELVDVMHIGAGDAIWVNIASEKTVSRGSKVFVLTTGGEGKAGAIQGETDANAIETGYTVIDVKGQLAMITKL*	phrogs_hmm	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0043	persistent	direct	high	440	0.998	GCA_005888265.1_01762
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	28709	29623	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	28710	29624	GCA_005888265_1_60_44	GCA_005888265_1_60_44	+	42453	.	PDB:5WK1_D	Major-Capsid-protein	MSLLTYVQNGLTAVSKEISETKYPEIVFPQFVYVDQQAAVGITEKLHYGADEHGSLDDGLISTGTSTLDQVEVGFTPTRSYIVQWAKSVTWATPELEQGKLLGLALDTAKIMVLNQNAQQTLQKVAFLGHAKDTRLTGLLNNPSVEVYNIKGTSANTKVQAMDFDKSVAFFKEMFLAGMEKTKRIEAPNTFAIDLLDLAHLALTQRNNTDTTALEFLTKSLSAAAGRDVAIKALPSNFGNRVTSGKTRAMVYVNSKEHVIFDVPMSPTVLAAQPKGLLAYESGLRMAFGGVTFMEPDSALYVDY*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0044	persistent	direct	high	914	0.999	GCA_005888265.1_01763
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	29633	29995	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	29634	29996	GCA_005888265_1_60_45	GCA_005888265_1_60_45	+	42453	.	PFAM:PF13262.5	head-to-tail-adaptor	MPTFETYVFIERYPEFKEVDYEKIDLFLSDAEMEVSQSRWGKLYQRGVLTLTAHLLRLSLWTTEGGGGANRNLASESAGELSVSYAVPTLTGTDADYQLTAYGQEYLRLRKLVGIGVMVA*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0045	persistent	direct	high	362	0.997	GCA_005888265.1_01764
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	29996	30442	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	29997	30443	GCA_005888265_1_60_46	GCA_005888265_1_60_46	+	42453	.	PFAM:PF05069.12	Virion-morphogenesis-family	MAVQITGNLAQAKALIERLRADKDKAVYIGFPAEFDKPVEGAENFNLASLAAVLEFGNERIPSRPFLRQTLSENQEKYTALFTQLFKQGLQIERIYEQLALVAQGDVQLNIARGNWVANAKSTIKQKGSSKPLIDTGKMRQSVKGIVK*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0046	persistent	direct	high	446	0.998	GCA_005888265.1_01765
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	30734	31237	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	30735	31238	GCA_005888265_1_60_47	GCA_005888265_1_60_47	+	42453	.	PDB:5A21_G	tail-completion-protein	MDTTTISALDTAKLRKWIQQALQLPNGAVIGGWLPENPLPAFITVDLMMSNEIGQATREFDGKRERIIQSMQSTVSLSCFGRNSLAQCYKLKAIFQSSAFLSFLKSNHWGVIRFSDVRNLTATVGADYEERGQFDVVFSHHHIVDTPLDPIANVEQRTNHLIQQIGG*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0047	persistent	direct	moderate	359	0.712	GCA_005888265.1_01767
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	31242	32750	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	31243	32751	GCA_005888265_1_60_48	GCA_005888265_1_60_48	+	42453	.	PDB:5LI4_E	tail-sheath	MALSISQIVNVQLNTMPKSAARKSFGIVALFTPEAGQAFADATTRYVYVENQRDVEQLFGTNSETAKAAQPFFAQSPRAKQLIIARWQKEPATIDATKNTLSGATLSDDLERFKAVVNGRFTLTIGAETKKVNGLSFADASDFNAIATKIQAKLTALSSSLSISYDSVGQRFIITSNTSGEDKATEIHYAFNGGGDGEYIGSLLKLENGQASRKVGKASISLKKETVAEALFNVAEVNNAWYGFTFAAQLTDGEVESAAKYAQANTKMFGANVIRVEQLEWSANNIYKKLYDAGLDHTLAMFDKNDMYPASSALARLLSTNFAANNSTLTLKFKQQPTITADEITATEFSKAKRLGINVYTYFDDVAMIAEGTVMGGKFADEIVILDWFTDAVQKEVFARLYKSPTKIPLTDKGQAVLIAAVEKVCLEGVNNGAFAPGQWTGDSFGNLTTGDYLEKGYYVWAAPMDTLSDSDREQRRATPIQTAVKLAGAIHSSDVIVNYNR*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0048	persistent	direct	high	1508	0.999	GCA_005888265.1_01768
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	32995	33426	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	32996	33427	GCA_005888265_1_60_49	GCA_005888265_1_60_49	+	42453	.	PFAM:PF11681.7	virion-structural-protein	MAVFDPKQVVVLLDGKEMSDWADGSDVINATNQVDAGQMVIGANGTGVFIANPDQSGKLTLKIKQHSEDNAYLSKLFNQQKTSIKTYLPMTLAIRDLINDDVVTASKGYFTTPAAYMRGNGHNATTWTIVFEKMTMNLEKGVQ*	phrogs_hmm	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0049	persistent	direct	high	431	0.998	GCA_005888265.1_01770
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	33426	33836	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	33427	33837	GCA_005888265_1_60_50	GCA_005888265_1_60_50	+	42453	.	PFAM:PF10876.7	Phage-tail-assembly-chaperone-protein	MESKQINIENVTYTMTPANAMTAWTALKNAMKLLQSVDLSSLGNNKKLGASVLTTVLANLGDTSIKELEDIVLKHTSCEQDGKLYRLSERFDSHFNQHRGHLIPVLKEGLMYQFADFFIGGGGLLSNIQPNLKATK*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0050	persistent	direct	high	410	0.998	GCA_005888265.1_01771
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	33987	36077	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	33988	36078	GCA_005888265_1_60_51	GCA_005888265_1_60_51	+	42453	.	UniProt:tr|A0A0A0YSN4_9CAUD	Tail-length-tape-measure-protein-	MLLDELLIKIGIDADSQAMQQFEQFLNVIGDGTESAAENLGTFAEVLERAVDDATEQIKAAPEFESFFDSLEKLQAETENLSEDDALDEWVQKLIEGDKLLSEFGESFLQNTEQLSKELQEAGLSAEQVEKVIGKLKSAIEQKTDATEKDTKAVEDNAKSTENLSDNIIDLWATQYGAVGLLNKFELLGISINKTTLKVAAFGAAFYAATIGVKNFVDANLDALDEIKQLSAVTGESADQIYNLGKVAEVNGSSAQAAQSSIEGLSRVIGEAAAGIGRGAKSFEQYGLSAKKANGEVKTSSEMLGEISDKMKAMGEQEQIAMLAKLGIDSSMIQTLRLGNDELKEQIALASVLTLGVGNAENAKTAASFKDALTQVSQAFRAIGEYVSLRVAPSIQRLAERFTKWFTENNDFIKATLNGFGKILSFLFELAAAIDNVVEHTIGWKNLIYALGAALLWFSRRMLLAFATNPVTLIIAAIAGLFLLVDDFITYLESGETALGEFWKPFKTALLWVKSTWKNFVDNFSVDPIGETLSLITDMLELPFKLGLALVVGLWNLFTGEQLDLDVIETKFAQVTDWIKKPFQSAFDWVKGYYDQYIAPIVDTVKGWFIDSGEKVGTASQNTKAYDTMMYDPSYTSAPQVAAVGAKSQTSNADNRVTNSNNKITITQHIQGTDNPKAVADQSVRVINHQLSSVVG*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0051	persistent	direct	high	2090	1.0	GCA_005888265.1_01772
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	36083	36859	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	36084	36860	GCA_005888265_1_60_52	GCA_005888265_1_60_52	+	42453	.	PFAM:PF06995.10	tail-fiber-protein	MLNFAQVSNRKIGKITFDVVTTEDHQSDLFITENPIESGAAIADHAVIQPKQVTINGVMVDHDHSTFGLDLPFIGNIRGGIDFLNNFPLPVKVITQTSQSIARAGRVISQVSGAYSQAKRTLNQARIIAPFLPDFGLGGLLDSSAGDSRVQKCYADLVACQKSGETIDIQTGINLYKNMLIQSVAVNQSQDGSATFTITAREIFIVETQTAQSKSSASGKRKSGRSSIQSATKSQQGSTQPKNDTPKRTSSLFNLFKW*	phrogs_hmm	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0052	persistent	direct	high	776	0.999	GCA_005888265.1_01773
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	36865	37173	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	36866	37174	GCA_005888265_1_60_53	GCA_005888265_1_60_53	+	42453	.	7KH1_B4	Myoviridae, Phage, Baseplate complex, VIRUS	MLKIPLTQHPYQEQTFEFNGIKIRLTLRFNSIGQFWAMDVFESVNQKQICRGHAIACGVPLLARTTQPYFFYLDDESGAELDPMSMEDLGTRCFLYIGEKAS*	hhsuite_tools	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0053	persistent	direct	high	309	1.0	GCA_005888265.1_01774
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	37256	37435	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	37257	37436	GCA_005888265_1_60_54	GCA_005888265_1_60_54	+	42453	.	.	hypothetical protein	MSKYSKTKLKIHLKEGLEMETNASPIMRGAIAFSIVIVALGLFALCITPLANVLIELAK*	.	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0054	shell	direct	high	179	0.994	GCA_005888265.1_01775
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	37450	38322	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	37451	38323	GCA_005888265_1_60_55	GCA_005888265_1_60_55	+	42453	.	PDB:1WRU_A	Tail-protein	MKQFGRRWKLDISNDQETLSIEQLRVAFEIDKTINEKPNPAKIQVWNLNRDHINQLLSQDYKKVALSVGYGELRQIYAGDITKTRIQREGLDFVLTLECSDGHQAYTQSRAKTTLKAGATDKQIVEELQKTMPKVQSGAIDIPNQRKLPRGRVLNGNSRDILNKIARNNKADWSIQDGALIFLPKDKVLNDDAVLISQDTGMINAPEQTDEGLELTCLLNPALQIGGLVKVESIIEYFNGEYKIVKLAHSGDGIGGDWHSKMTVVGGKFQKVEKEKGSQTSNKQSKDKNK*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0055	persistent	direct	high	872	0.999	GCA_005888265.1_01776
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	38319	38963	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	38320	38964	GCA_005888265_1_60_56	GCA_005888265_1_60_56	+	42453	.	PDB:4RU3_A	phage-baseplate	MNYAQILATPETATDHQIQQNQLNLHTALPAKVVSFDPAKQTVSLAIQIKMQLVDGSGADIPPLLDVPVSFPRGGGFAVTFPLKAGDEGIAIFSERCIDGWWQNGSVSTPLDFRLHDLSDAMFIPGICSVPKAIGGFFTDGLSMQTLDGSTYIRIKNGSILIKGNIEHQGDTSQTGSHSSTGVISSDTDVTAGGISGKTHKHTGDSGGKTGVPE*	common_virus_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0056	persistent	direct	high	644	0.998	GCA_005888265.1_01777
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	38960	39313	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	38961	39314	GCA_005888265_1_60_57	GCA_005888265_1_60_57	+	42453	.	PFAM:PF10934.7	baseplate-wedge-subunit	MSVRRLNKEHDWTFGQGFSNYASESDAIVQNVQTRLWSFANDWFLDLEHGLPWLEQMGRGVNMAGWEIKIKRYVLETEGVSRITDYQANFDTDTRKLTISIDYQDIYGQQQTARYDA*	phrogs_hmm	hypothetical_protein	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0057	persistent	direct	high	353	0.997	GCA_005888265.1_01778
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	39498	40016	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	39499	40017	GCA_005888265_1_60_58	GCA_005888265_1_60_58	+	42453	.	pfam10547	P22_AR N-terminal domain. This domain was identified by Iyer and colleagues.	MQTLTAEFLGKEVTLVDNNGVAYVAMREIVEGIGLDWKGQHKKLMEQSEKFNCGHITTVAKDGKNREMLCIPIKKLNGWLFGLNPNKVRADLKERLENYQEECFLALWDYWTEGIARRDEVKNKLALWQQKKAEYTQRATERGKLLQQCKSEKQALERELLQIKQLDLFVNL*	mmseqs_cdd	nonviral_gene	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0058	shell	direct	high	518	0.998	GCA_005888265.1_01779
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	40059	41201	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	40060	41202	GCA_005888265_1_60_59	GCA_005888265_1_60_59	+	42453	.	PFAM:PF04865.13	Baseplate-J-like-protein	MAKLIETGIQIERLNEIVARFEDGFRQIYGQNIDLSPNSPDGQMVGLLAQMKMDIEELAENVYRQLDPDVATGAWLDQRVAYAGLRRRAASYSYLRSVILTGEPLTHLYAGIVVSDPHKVRWVLTADVQLDSNGSARADFRSEELGAFNLIKNTNLTIETVTLGLNSATTFENAEIGEEEETDLQLRERFFISRTKNAQNSADAIQSKIAALPDVRQVKVLENNTKQRDKYGVEPNSLNIIVDGGADEQIAHVIYENKGAGVGLQGATETTLTVNGERRALRFDRATPVDVQVSMRCVRYEDFTEVDKDEIKRLLSIQHFEIGQNLSLSRLYSPINEVGGFWVKELKIGRKGRSLTTENITAQPRELIRILATDITIEVE*	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0059	persistent	direct	high	1142	0.999	GCA_005888265.1_01780
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	41201	41776	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	41202	41777	GCA_005888265_1_60_60	GCA_005888265_1_60_60	+	42453	.	pfam11041	Protein of unknown function (DUF2612). This is a phage protein family expressed from a range of Proteobacteria species. The function is not known.	MGYSDLLIWQYRNKPKAVSTIKLFESIIGQGFIDLYRLQDVLNIETATGHQLDLVGKHVGQFRVINGYQLRKFFGFRNSPNALGFSQKRLGGAQWYRKRDPLSDSVRLSDDDYRFLIKCRILKNYQIGTLPNLIEACLFIFGEDCHIVDNYDMTVSISVPSASTSDFKRFAINHLDILPRQAGVQYLFNLI*	mmseqs_cdd	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0060	persistent	direct	high	575	0.998	GCA_005888265.1_01781
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	CDS	41786	42451	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	41787	42452	GCA_005888265_1_60_61	GCA_005888265_1_60_61	+	42453	.	PDB:2FKK_A	Baseplate-protein-	MALVNKPDESIFASSAKQGEVDNFPDLLRGWGITLDQTQGIPPMEWFNFLFKRLDEKHTYLMQRGLPEWSATQDYTKGSCVQFNGISYRALKNSKNNSPNESDSQYWVRWGFALSEIARATLQQYGIVQLSSATNSDSETEAATSKAVKTAYDKAVEAKTTADGKVGLNGNESINGEKTFENRIVAKRNIRISDSPHYASRGDYLNIGANDGDCWFEYKSSN	hallmark_hmm	common_virus	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_CDS_0061	.	unmatched_CDS	none	0	0	.
GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote	cenote	CDS	580	897	GCA_005888265.1	LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265.1_LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265_1_66	GCA_005888265_1_66	581	898	GCA_005888265_1_66_1	GCA_005888265_1_66_1	+	4907	.	PDB:1Z19_B	Integrase	MATIIKNGKRWHAQVHKFGVSKSATFLTQADAKKWAEMLEKQLESGKYNEIPDITLDELIDKYLKEVTVTKHRKREERIRLLRLSRTPLAAISLQEIGKAHFREW*	common_virus_hmm	common_virus	NaN	.	0	4907	GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote_CDS_0001	persistent	direct	high	317	0.997	GCA_005888265.1_01892
GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote	cenote	CDS	1355	1579	GCA_005888265.1	LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265.1_LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265_1_66	GCA_005888265_1_66	1356	1580	GCA_005888265_1_66_2	GCA_005888265_1_66_2	+	4907	.	PDB:1Z19_B	Integrase	MEARQLDHNFRKLKKMEGLENANLHFHDTRREALTRLAEKVDVMVLAKISGHRDLSILQNTYYAPDMAEIAQRL*	common_virus_hmm	common_virus	NaN	.	0	4907	GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote_CDS_0002	shell	direct	high	224	0.996	GCA_005888265.1_01894
GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote	cenote	CDS	1639	1797	GCA_005888265.1	LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265.1_LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265_1_66	GCA_005888265_1_66	1640	1798	GCA_005888265_1_66_3	GCA_005888265_1_66_3	-	4907	.	PFAM:PF03819.16	MazG-like-pyrophosphatase	MADLQQLVKNIEQWAEDRNLIEGSTPQKQFIKLMEEFGELCSGVAKFILFET*	phrogs_hmm	common_virus	NaN	.	0	4907	GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote_CDS_0003	persistent	direct	high	158	0.994	GCA_005888265.1_01895
GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote	cenote	CDS	1852	2322	GCA_005888265.1	LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265.1_LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265_1_66	GCA_005888265_1_66	1853	2323	GCA_005888265_1_66_4	GCA_005888265_1_66_4	-	4907	.	PFAM:PF05840.12	nicking-at-origin-of-replication	MTKRCDQPICIEYEECEPNKYGEIRKKIVGVKNRFTEKKIITKLKNWVIKSAKSALGSTALNSESTETNKAHRAAWTCVNNCNRLKIEQQMKELMLPIGSPLKPSQIELLMRHGRLRLNDYRWICCENDEVFIKEEKIPLAQAFGWGESLGDFRVN*	phrogs_hmm	hypothetical_protein	NaN	.	0	4907	GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote_CDS_0004	persistent	direct	high	470	0.998	GCA_005888265.1_01896
GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote	cenote	CDS	2334	2555	GCA_005888265.1	LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265.1_LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265_1_66	GCA_005888265_1_66	2335	2556	GCA_005888265_1_66_5	GCA_005888265_1_66_5	+	4907	.	pfam06074	Protein of unknown function (DUF935). This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu gp29 protein.	MQTITQQIILPYLQINVDPNIAPHRIPYFEFDTKEYEDLSVFADAIPKLTGIGVQISESWVRDKLGIPEPQEG*	mmseqs_cdd	common_virus	NaN	.	0	4907	GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote_CDS_0005	shell	direct	high	221	0.995	GCA_005888265.1_01897
GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote	cenote	CDS	2567	3274	GCA_005888265.1	LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265.1_LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265_1_66	GCA_005888265_1_66	2568	3275	GCA_005888265_1_66_6	GCA_005888265_1_66_6	+	4907	.	PFAM:PF06152.10	minor-head-protein-and-DNA-pilot	MKRREIDKPDDSSEFLVEVERPADKQGNREKTVGFKLSDGTIRVTDKGFDYNVGRLNYKSNLDLYPEKLAHAFAKVEMKGGEFKHDFELLAKHMAEMKQTLSLDGKKLTADQMLQVRDSLTKNFKFAAGVLSAESKDLLKSKTGTVWLSDDTLIKQFNSRDGQDFGIDEYESLPDIINALEHLLQVKDFADRYTFIRQGKMLVVKILPKEIFVLSFRRIKDKELKKLLEKDYALR*	phrogs_hmm	hypothetical_protein	NaN	.	0	4907	GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote_CDS_0006	persistent	direct	high	707	0.999	GCA_005888265.1_01898
GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote	cenote	CDS	3398	3814	GCA_005888265.1	LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265.1_LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265_1_66	GCA_005888265_1_66	3399	3815	GCA_005888265_1_66_7	GCA_005888265_1_66_7	+	4907	.	CDD:TIGR01635	phage-virion-morphogenesis-protein	MIEIEINNAQEIASALERLAQATAHRAPLMRSIAGTMESAVAQNFEVGGRPAWKKLKIRQGTPLVDTENLMASITSEYNNNEAIVGTNEPYAAIHQFGGKAGRGRKVAIPARPFLILTPQDEADILEDIQDYFQRLIN*	hallmark_hmm	common_virus	NaN	.	0	4907	GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote_CDS_0007	persistent	direct	high	416	0.998	GCA_005888265.1_01899
GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote	cenote	CDS	3974	4150	GCA_005888265.1	LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265.1_LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265_1_66	GCA_005888265_1_66	3975	4151	GCA_005888265_1_66_8	GCA_005888265_1_66_8	+	4907	.	TIGR00705	signal peptide peptidase SppA, 67K type. This model represents the signal peptide peptidase A (SppA, protease IV) as found in E. coli, Treponema pallidum, Mycobacterium leprae, and several other species, in which it has a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half. This enzyme was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. [Protein fate, Degradation of proteins, peptides, and glycopeptides]	MGNSQDFRFLTFNGYVSQNLRTATSAPIQKLQKELNVLTKFNDPKGQYLYCLNCGKVK*	mmseqs_cdd	nonviral_gene	NaN	.	0	4907	GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote_CDS_0008	.	unmatched_CDS	none	0	0	.
GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote	cenote	CDS	4188	4904	GCA_005888265.1	LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265.1_LNKS01000067.1	GCA_005888265.1|LNKS01000067.1	GCA_005888265_1_66	GCA_005888265_1_66	4189	4905	GCA_005888265_1_66_9	GCA_005888265_1_66_9	-	4907	.	COG3475	Phosphorylcholine metabolism protein LicD [Lipid transport and metabolism]. 	QIRYSLGGGTLIGAIRHQGFIPWDDDIDVYMHRDEYQKFINAWLHEKHERYSIGTAEDILASNTGEMTKIFDNKTKTIDINGNENKIFIDIFIYDGIPNNKKIIYTIIKKYRKRKNRFASCKKRWIRASQNSLKYTILNWLSNLLFHRMQNYLSEIQKLHPINTSENIGLLMTEYRNWNKAYMPRAYFNHVIYKEFEGRQFQVMNGYHEHLTQYYGDYMKLPPEEDQKPHHIQEAYIL*	mmseqs_cdd	nonviral_gene	NaN	.	0	4907	GCA_005888265.1|LNKS01000067.1@region_1_4907@tool_cenote_CDS_0009	persistent	direct	moderate	627	0.874	GCA_005888265.1_01900
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	1	1224	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	2	1225	GCA_005888265_1_7_1	GCA_005888265_1_7_1	-	59820	.	UniProtKB:R9TNR5_9VIRU	Tail-fiber-protein-	MASLITPQFERYVAEQTIARGTVQFDEFIFANIPGLNEHNLAQYLTMPTSAQIVHRQAVSQSGVINENAVVYSVTIGTEVGDFDFNFIGLINRSKNLLAVAVQTDTVKKIRNKNAVQGNSITRNILLEFSGAKALTGINVNANTWQIDFTVRLHGLDEKIRLTNRDLYGRAVFFDDSFLVKRKTGHQFTIQPGTAYVEGVRMDLGAEHHLTANSLPCSIYADVVHHCTVTGEYQTEIKYLTQSKADYVDTVNRQHYVQILADIDSQGNVTDRRLLSPFLGMNPLTLDDTTENNKDKQGHTHKLPIASLVKKGIVKLFSGYDSDAEDMAATSKAVKIAYDKAVEAKTTADGKVGLNGNESINGEKSFENRIVAKRNIRISDNPIYASRGDYLNIGANDGDCWFEYKSSN	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	1251	1775	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	1252	1776	GCA_005888265_1_7_2	GCA_005888265_1_7_2	-	59820	.	PFAM:PF09684.9	Tail-protein	MKIKLPFWMDKGELNKVAVLFGKWWDYVLSAVKFPFNILDEEHCSERILNLIAYQRDVERFEGEPLELFRKRVKYAFLNAKDAGSKAGFIRIFERLGIGYVEIEERFDRENWDVIKIRISDSQLAKKTALLNLIIRKYSRTCRRYTFEVITKETVSIYHGEFNHDHQSFYVKVN*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0002	shell	direct	high	524	0.998	GCA_005888265.1_00181
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	1785	2954	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	1786	2955	GCA_005888265_1_7_3	GCA_005888265_1_7_3	-	59820	.	PFAM:PF04865.13	Baseplate-J-like-protein	MSENFKQMLAESGLPTEETQIRQEFERLTAEEGLITNTSRMSPFWRLITAIAVKPVKWLTDHLIAEILPNLFVKTAKDSWLQLQAWTVGLDFKAATKAEGVVHFTKESDVTDLTIKAGTVIQTERINDVIFRLIVTKDTIIPKGVLRAPVPVIAEQAGANFNLATGYYRILPESIAGISAVENLGDWLTSPGADRETNDELRERYRTQFSSVGQHHIDSVYKGMIAKVAALSVDRIYFKHDAPRGPGTANAYLLLDTGVTSQPFIDKVNRHVRDEGFHGHGDDLLCFAMPETRHNVTCTIYFHSTIFVGDVRRQEILSQVENMIRAAFRENNNYNVTKTYPFRRFSWSKLGEEIHDSIGEIASIVWGQADIQSELSIPRIQQLSVTVQK*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0003	shell	direct	high	1169	0.999	GCA_005888265.1_00182
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	2947	3282	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	2948	3283	GCA_005888265_1_7_4	GCA_005888265_1_7_4	-	59820	.	pfam10761	Protein of unknown function (DUF2590). This family of proteins has no known function.	MEKLYLDLLITGEDMTRDSGNQPLICDNRISIAQDIKHAILESGLATQLIAERSRIFRRDIILQMVLLVEEDARLIPGTVSISEARLGQLFITAETYEFGRLDELELRLNE*	mmseqs_cdd	nonviral_gene	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0004	shell	direct	high	335	0.997	GCA_005888265.1_00183
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	3286	5562	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	3287	5563	GCA_005888265_1_7_5	GCA_005888265_1_7_5	-	59820	.	PFAM:PF10145.8	tail-tape-measure-protein-	MSAVQGLEYIISLTDQLSAPLKGVMKSIDDLGKRGEAAMKKIGLGVAGIVGAGFALKSALDPAIELNRAIGEVRSLGVADDALEKLSKTALNFSSQYGESAVDFVRSSYDIQSAIAGLNGNELAEFTKTSNLLAKGTKASAATITNYMGTMYGIFAEDATKLGNANWVNKIAGQTALAVKMFKTSGDGMSAAFKSLGAAAKSAKIDVAEQVGVLGNLQASMSGSEAGTKYKAFLAGVGATQKELGLSFVDTNGDMLDMVTILNKIKGKFGDTLDVAQATKLKKAFGSDQAVDLIKFLLPKTKELKNNIADIAKVSDTKALAQMARSMVDPWSRLSQIITGVKTAIGGEILKKLDPIMHKVADLGQEFIDWLKTYKNIARWIGYIIGASIGFAAVAATISLVSGAMGLLKVGAIAAFAPIRGLLSLMSLLGKPLVLIRSAIMLIFAGFKTLISVVWAVINPLKMLRLVFAFAFSPLSILLLAGLAIYKFRHQLKDLWNGVKQGFGSLESHLAPLYRAFDIVKSAGQKVSNAIGRIAGLFSANAESAMLFQNVGVAVGQAIGFAFDVVLFVIELIARQIEAVATIFSNVADVIIATWHNVIDDWESKSAWDIFKGLATGIGQIFTTILKGIKDQFINTINWIIDKVNIVSGKIGFELPKIPNTWLSDHAQVTTVTAASNISSLGLNAAVDNASWKKSPSIDLPNNLKPQLNSMPQGSVTKTLTQNRTEQRTINYGGLAFYGYDKREITQELRNKEQLAAG*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0005	shell	direct	high	2276	1.0	GCA_005888265.1_00184
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	5749	6057	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	5750	6058	GCA_005888265_1_7_6	GCA_005888265_1_7_6	-	59820	.	pfam10963	Phage tail assembly chaperone. This is a family of phage tail assembly chaperone proteins.	MEKTQAQTLLEKLTGNLKDSVTLNIAGVDFTFIRDNAAYDQMLNDIESNNKVTPIKDYLLAIVAREQKEALLEIIHVPTLAAQLAAKVNEVFVPEIQITVKN*	mmseqs_cdd	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0006	shell	direct	high	308	0.997	GCA_005888265.1_00185
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	6060	6281	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	6061	6282	GCA_005888265_1_7_7	GCA_005888265_1_7_7	-	59820	.	PFAM:PF08139.11	Rz-like-spanin	MMLLACSTSVPQRNNLKLICPQTTECRALSVNIRINGDLAESLNQALDRLEICTTAYTAITKCITDFNNQKEN*	phrogs_hmm	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0007	shell	ambiguous	low	43	0.194	GCA_005888265.1_00186
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	6238	6570	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	6239	6571	GCA_005888265_1_7_8	GCA_005888265_1_7_8	-	59820	.	PFAM:PF10828.7	Rz-like-spanin	MEFKALFMGVFLMVFVGCIGSTLHYKKQAETTALLLKQNEQTIEQNKVMLQRYERQHAKLTYQLNHANKKAEQRSQQLKDVLNNAENKNWTNERVPNDVAGVLNQRTTTK*	phrogs_hmm	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0008	shell	direct	high	332	0.997	GCA_005888265.1_00186
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	6570	7130	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	6571	7131	GCA_005888265_1_7_9	GCA_005888265_1_7_9	-	59820	.	CDD:cd16901	P1-lysozyme	MSKKLGAMILCSAAAVVTAFFAQQKDLPAQQQNQVSLKAVSMIVNLEGCVRNPYKCPADVWTNGVGNTHNVDKTKILTIDEVAVDLRQNIKQAENCINADFNGRKMNQDQYDAMISLAFNVGCGNIKTYYSKTQGKRVATTLYRAAQAENWILMCNRIEDFNKSAGRVLKGLQIRRAKEKALCLGE*	common_virus_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0009	shell	direct	high	560	0.998	GCA_005888265.1_00187
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	7123	7359	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	7124	7360	GCA_005888265_1_7_10	GCA_005888265_1_7_10	-	59820	.	pfam16080	Bacteriophage holin family HP1. Phage_holin_2_3 is a family of small hydrophobic phage proteins called holins with one transmembrane domain. Holins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	MNSKIDSTIPFIGSLTALISGYSLHEWASLFGILFGAVSVWFAYRKYKEDVQARKDELAYKMLAAKIEAKKLGIAIDE*	mmseqs_cdd	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0010	shell	direct	high	236	0.996	GCA_005888265.1_00188
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	7446	7898	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	7447	7899	GCA_005888265_1_7_11	GCA_005888265_1_7_11	-	59820	.	PFAM:PF10772.8	major-tail-protein	MERISGMSFDFYLFGLPIHAESISLSITDNSAVVQTRGIPDGWASGDVTAEGEIELDAKNFSKLSAAAAAAGSYRSLPETDFTFFAQRGGIRDKVETFGNKIILTDVLSIDPKGGAKSTKKLKYFVTSPDFVRINGVPYLSDEDTRDLLG*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0011	shell	direct	high	452	0.998	GCA_005888265.1_00189
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	7902	9032	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	7903	9033	GCA_005888265_1_7_12	GCA_005888265_1_7_12	-	59820	.	PDB:3J9Q_Q	tail-sheath	MFPSVQINALNQLSGETKEIERHALFVGIGTTNQGKLLALTPDSDFDKVFGETDTDLKKQVRAAMLNAGQNWFAHVYIAQEDGYDFVECVKKANQTASFEYCVNTRYLGVDKASIGKLQECYAELLAKFGRRTFFIQAVQGINRNTSDGETWDQYVQKLTTLQQTLVADHVCLVPLLFGNEAGVLAGRLANRAVTVADSPARVQTGALVSLGSANKPLDKDGNELTLAHLKSLETARYSVPMWYPDYDGYYWADGRTLDVEGGDYQVIENVRVVDKVARKVRLLAIAKIADRSFNSTISSTEYHKNYFAKPLRDMSKSATINGKDFPGECMPPKDDAITIVWQSKTKVTIYIKVRPYDCPKEITANIFLDLDSLGE*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0012	shell	direct	high	1130	0.999	GCA_005888265.1_00190
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	9036	9164	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	9037	9165	GCA_005888265_1_7_13	GCA_005888265_1_7_13	-	59820	.	.	hypothetical protein	MKQYGLFKTIFGLGLLVIMARFPETIDSIANMISLLTTIRGQ*	.	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0013	shell	direct	high	128	0.992	GCA_005888265.1_00191
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	9294	10007	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	9295	10008	GCA_005888265_1_7_14	GCA_005888265_1_7_14	-	59820	.	PFAM:PF05069.12	Virion-morphogenesis-family	MGLKPGTVEKLKHTLLYLRLTPKMRNQVMQKVLWRLKKNAEKNVSHQQSPDGKTWTPRKKKLKGGVRKNKLLKESATNLNSKLEQQGERGKLFYKNPHWAKVRAIHQYGLEVPVEQTEKDKKALAKLLAQNNQPATPQQARRLRELGYQVRNGKTKTGKQKYKKVRLKSIRQTMSRGQAGLIIRMMEKQKGINIRRGLASYKMAKREFLDENPKRNADIITEELLKGFEKAGYHLQP*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0014	shell	direct	high	713	0.999	GCA_005888265.1_00192
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	10016	10498	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	10017	10499	GCA_005888265_1_7_15	GCA_005888265_1_7_15	-	59820	.	PFAM:PF06891.10	phage-tail-completion-protein	MATVKKMRYQQLTAFLLTKLPKRYHGNFYSWIEDGKLLNEGRQVTENGIEVCHLSYNGVFHFEALPFNEISPAYLMAHIQVWVNENDPMRDVLDESEIPFDLDIIDDNTADLIFTIAFREPLTAMEDSEGELKIEGVNYRLDDIDVFTAEYIDVVVTVEQ*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0015	shell	direct	high	482	0.998	GCA_005888265.1_00193
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	10486	10938	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	10487	10939	GCA_005888265_1_7_16	GCA_005888265_1_7_16	-	59820	.	PFAM:PF05926.10	head-completion-protein	MFNGRTQDYDDTVITNNGFWSDIYVEEFQKQRAIPLQIPVEMVKTALIAAMQGVNLDLAEVEENHRKSAVNSVTEISSSLINGENYAETLYKKAVFARAKAELLPEFNTLSGREIHQNRDYVTEQKSLLAEATHAIRTLKGKKRGSVWLL*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0016	shell	direct	high	452	0.998	GCA_005888265.1_00194
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	10931	11749	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	10932	11750	GCA_005888265_1_7_17	GCA_005888265_1_7_17	-	59820	.	CDD:PHA02537	terminase-endonuclease-subunit	MQALAEINQVSESNTQQSAVATHGNDYAVLEIALQNDVNAVRAFQTRAEKLDYKRNRFLPKWLPFVNEYLDKGAIYQNDYLVYCIVYLFDIADFDRALSLAEKAIEQNQSMPQGWQTTLPNFVADQIYNWTDKTAAAGQSVEPYFTQTFKNVATQWKLHEIVTAKWLKLAAALLLRSPQGKVQASGIDDAETLVLAIQLCNRAFQLNQKAGVKNMIERCVMRLNALAKSGDYDPNRLPQVAGLSLEPSQIDFDLVIKKLTARPLQNSEEGNV*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0017	shell	direct	high	818	0.999	GCA_005888265.1_00195
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	11790	12800	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	11791	12801	GCA_005888265_1_7_18	GCA_005888265_1_7_18	-	59820	.	CDD:TIGR01551	phage-major-capsid-protein,-P2-family	MNKQAYYALVAALAKHFNQPMDSILRGESFSLKAPEAALLGENIQQRSDFLKQINMVQVAHIKGQKLFGATEKGITGRKQTGRNLANLDHTQNGFELSETDSGIIVPWALFDSFAIFKDRLVELYSEYFQNQVALDILQIGWNGQSVANNTTKTDLSDVNKGWLKLLQEQRAANFMTESTKSSGKITIFGDNADYANLDDLAFDLKQGLDFRHQNRNDLVFLVGADLVSKETKLIQKKHGLTPTEKAALGSHNLMGSFGGMNAITPPNFPARAAAVTTLKNLSVYTEAESVRRSLRNDEDKKGVVTSYYRQEGYVVEDLGLMTAIDHTKVKLNGEA*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0018	shell	direct	high	1010	0.999	GCA_005888265.1_00196
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	12804	13691	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	12805	13692	GCA_005888265_1_7_19	GCA_005888265_1_7_19	-	59820	.	CDD:PHA02529	capsid-scaffolding-protein	MNKSKLKTDFICIATSGYTVDGRQITAQELHEMAETYDPEHYTANLWPEHRRYFSCGEVLEVKAEEQENGEVKLFAKIAPNQQLIDFNRDGQKLFTSVEIAGNFRNSGKAYLSGLGVTDSPASVGTTKLDFFNHQDKVQCSEFINIDFTEQKNDEEKMTRSFFNAIKQFFSSSEQQEEQSTPHNNNNKEDDAMNDKQFEQLIEAVNGLGAKIDNHFSAKVETKEPKNKPEEKKDEQPQSVTAEQFNQLLTTVQALDKKFNELSQEQTTVPSGVPTVESENVYSLNGYNIDLSKGF*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0019	shell	direct	high	887	0.999	GCA_005888265.1_00197
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	13895	15565	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	13896	15566	GCA_005888265_1_7_20	GCA_005888265_1_7_20	+	59820	.	CDD:PHA02535	terminase-ATPase-subunit	MTESKLRKRKTKRYDDEVIYAAKFLYLKKYTPKEIAEELGLNSTRPIYYWAEKYNWRNLISESGIEELIALRIITLTERENKSDQEIKELEALIDKDIQYKKQRVATVAKVTAKSAVNSADVSGNERAFADSGDGDERKKKKRVKNDISHVTPEMCQPFIDSLFDYQKHIRANKHHDVRNILKSRQIGATYYFSFEALEDAIFSGDNQIFLSASKRQAEIFKNYIVKMAREYFGVELTGNPIILSNGAELHFLSTNKNTSQGNSGHVYGDEYAWIRDFQRFNDVASAMATHEKWRETYFSTPSSKFHESYSFWSGDNWRDGDPKRKNVSFPTFAELRDGGRLCPDGQWRYVVTIEDALKGGAGTLFNIEKLKQRYSKYAFNQLYMCVWIDDADSIFTVHQLLKCGVDISKWKDFNPKADRPFGDREVWGGFDPAHSGDGASFVIIAPPALPSEKYRVLARYQWQGLSYVYQANQIRALYEKYNMTYIGIDATGVGYGVYELVKEFARRAATAIIYNPESKTGMVLKVHDLVEHGQIEWSEKELDILSTNQQNLAIR*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0020	shell	direct	high	1670	0.999	GCA_005888265.1_00198
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	15562	15699	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	15563	15700	GCA_005888265_1_7_21	GCA_005888265_1_7_21	+	59820	.	PHA02535	terminase ATPase subunit; Provisional	MTFTAERTVKTQHADVFFAICNAINKKSLSDKPRKRRGWSVLNEN*	mmseqs_cdd	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0021	shell	direct	high	137	0.993	GCA_005888265.1_00199
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	15689	16723	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	15690	16724	GCA_005888265_1_7_22	GCA_005888265_1_7_22	+	59820	.	CDD:PHA02536	portal-vertex-protein	MKTNVTDNKKGIVIAPINDRTFSLNEISASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRANMVSALYEGGKALSRMDMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYSYLMKKSLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGGHMGFILYSTDPDLTEEMEEEIAKKISESKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETINQDPEIKNLLKIKFREQNFAK*	hallmark_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0022	shell	direct	high	1034	0.999	GCA_005888265.1_00200
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	17096	17503	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	17097	17504	GCA_005888265_1_7_23	GCA_005888265_1_7_23	-	59820	.	pfam15919	HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	MLYPIGIEMGDENHTYGVVVPDVPGCFSAGDTLEEAFINAKEAITFHIEGLLEDGEEIPQPTSLQEHVKNPEYEGFTFSFVDVDLTHLMGKAEKINVTLPSLLIKRIDSFVATHPEYKNRSNFLAQVVTNKLLAA*	mmseqs_cdd	nonviral_gene	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0023	shell	direct	high	407	0.998	GCA_005888265.1_00201
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	17567	17746	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	17568	17747	GCA_005888265_1_7_24	GCA_005888265_1_7_24	-	59820	.	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family [General function prediction only]. 	MNSAKIIKQIEDDGWYLVNVVGSHHQFKHPTKKGRVTVPHPKKDLQIKTVKSILKQAGI*	mmseqs_cdd	nonviral_gene	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0024	shell	direct	high	179	0.994	GCA_005888265.1_00202
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	17826	18344	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	17827	18345	GCA_005888265_1_7_25	GCA_005888265_1_7_25	-	59820	.	PFAM:PF05869.10	Adenine-specific-DNA-methyltransferase	MNKSNTKKSDKDLWATPWWVFYYAEQYFNIKFDLDACAMEHNTKVKNFISPEQDTLTADWQGRYCWMNPPYSNPLPFVLRAISQSVLHNKTVVMLLNVDGSTKWFDMCVRNAKEIVYITNSRIPFINNETGEETDQNNKPQMLVLFEPKAPYGSLKSSYVSLHTMKESNNKK*	common_virus_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0025	shell	direct	high	518	0.998	GCA_005888265.1_00203
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	18354	18659	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	18355	18660	GCA_005888265_1_7_26	GCA_005888265_1_7_26	-	59820	.	.	hypothetical protein	MNKRKQKQLRRIMAAKRAEKCGQIDLKNLQAQVWDLAVQSQQTASWVKTQGETHRLLYRYFSKEIARLEKRRTPELILLAMASGFLGGAVVGYVLWLLAIL*	.	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0026	shell	direct	high	305	0.997	GCA_005888265.1_00204
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	18671	21010	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	18672	21011	GCA_005888265_1_7_27	GCA_005888265_1_7_27	-	59820	.	PFAM:PF05840.12	Rep-protein	MQSMWEQQRDNTVSAKKAHMAVVACERYQAAENGHKFDRTSLPFDERYYTPLQLELFATNPVDFEFIEQKLENLPRQRQREYFRKLYIKAYRSVKDDGSIVFALGNKQRRYANDYLRNVLDVRLQKVFSQYNVNVDFLQTFINTPQWLLSVKDEMQQAVQFSTVPTREELSKHYNELHYSGFHFQLFGIQQKQKQLPFYLITERKLKKMAYEMAAAFIRFQCDCSHFLKNGIEKDNEGDIQGYFYQLYKWCGEIALSAGFKIPHWEKIENDKRIKGEYIDSTLLRLTCEKWWFKQMRDIQKRMVEHIAIACGEVRANAASYISNQSFQEWQLQQRKNHDYLRAMIIENIDNPEEQVELFDMFLKSSSNPALRRNEMMVRLRGLEEWAEENNNEALFLTLTAPSSFHAGNGNKKWSGVNPRDTQNYLNKVWQQFRALLSKRNIKFYGMRVAEPHKDGTPHWHALFYVQAEHKEEVIRLFKQKALELDGNEKGAAEHRCKVEECDKTKGSATAYIAKYIAKNIDGFALAGEVSDEDPTLSLHDNALRVRAWASRWGIRQFQFYGGASISVWRELRRLISGQADDEIINKAQAAAGIANDYAAYMEIQGGALAKRTDQPIKLDYETKPANKYGEQRKAIIGLANRFSLKQVISRTKKWQIKKRPQDFAQRAESMVEHSSTASNSARSAPWTWTWTCVSNCNRSILEQKIKLLIQSICAPLSAQKLDYLFKYKRLIIDKYTAIELTENDVQLVKRNQNMMTSLSPVPRNIQKLKDFHKNNRIQ*	rep_hall_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0027	shell	direct	high	2339	1.0	GCA_005888265.1_00205
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	21071	21406	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	21072	21407	GCA_005888265_1_7_28	GCA_005888265_1_7_28	-	59820	.	.	hypothetical protein	MYVSENESVVEKWYRENGIPMSKARNSEETLHEMGLSKYPTERAFNHISDEQKGMLKALADIEPFEDYILPDLTGDKLWHYNEKGIDKLTKAFHAMSALRTPFPRALTRRD*	.	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0028	shell	direct	high	335	0.997	GCA_005888265.1_00206
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	21425	21928	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	21426	21929	GCA_005888265_1_7_29	GCA_005888265_1_7_29	-	59820	.	.	hypothetical protein	MTKSSFTFFFQEYCEKHNLTNEEIQERFAILQYQAEVERDTTQAHQQLSAIFAKCREGYPRKQANNDETTSQYTGAEHQVIRDLFASLKQSAREAHSLHHQSHQGDVQVHAKSNPSRVLEVPAVTEVDKSVLAYLEAFFASDRSSSEILKLSNRLFNLGQAYNKSGK*	.	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0029	shell	direct	high	503	0.998	GCA_005888265.1_00207
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	22061	22300	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	22062	22301	GCA_005888265_1_7_30	GCA_005888265_1_7_30	-	59820	.	PFAM:PF11112.7	Cox-like-excisionase-and-repressor	MNKQNTICINIHMEQPYMTREEFAKKLDVSIGTIDRLRQQGVLKCIKMKNDKGEETERGLVLVDLVAIAVRNAKNAFQI*	phrogs_hmm	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0030	shell	direct	high	239	0.996	GCA_005888265.1_00209
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	22297	22488	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	22298	22489	GCA_005888265_1_7_31	GCA_005888265_1_7_31	-	59820	.	PFAM:PF04221.11	Arc-like-repressor	METNATPIQARKGRNPTLQISLEQKIISKIEALAIKEDRSISSMGRVLINRALAMTAQQEEQQ*	phrogs_hmm	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0031	shell	direct	high	191	0.995	GCA_005888265.1_00210
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	22611	22985	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	22612	22986	GCA_005888265_1_7_32	GCA_005888265_1_7_32	+	59820	.	PFAM:PF10078.8	transcriptional-repressor	MENRIDLNSYEIIERMKKICNVHTDKELATVIGIQPPSVNKWKVRNLVPLGPLLIISNQFSVSLDWLIFGCASNDLSTHEKLALIAFNDLDDHKKLEAIAFMTGLKTSSSQTGAITQHVSGSKK*	phrogs_hmm	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0032	shell	direct	high	374	0.997	GCA_005888265.1_00211
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	23116	23289	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	23117	23290	GCA_005888265_1_7_33	GCA_005888265_1_7_33	+	59820	.	.	hypothetical protein	MSKKIITRKENLLLQEDFFRSVTEQITETEQRRKQKREEFENVKQCGANLTKHRFTY*	.	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0033	shell	direct	high	173	0.994	GCA_005888265.1_00213
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	23330	23572	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	23331	23573	GCA_005888265_1_7_34	GCA_005888265_1_7_34	+	59820	.	PF13783.6	Domain of unknown function (DUF4177)	MAYTYKMIQIPPNIEVDKKHKDTGAATYLERTVNEYAAFGWEFIRVDEIGVQEKPGCLGALSGQKSFPVNYYVITFRKPV*	hhsuite_tools	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0034	shell	direct	high	242	0.996	GCA_005888265.1_00214
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	23572	23775	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	23573	23776	GCA_005888265_1_7_35	GCA_005888265_1_7_35	+	59820	.	COG0759	Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis]. 	MVWLSIQFILFYQRIAPRELRGACRFTPSCSNYAILALQKYGFWKGWKMALNRLGRCKYPNGGEDLP*	mmseqs_cdd	nonviral_gene	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0035	shell	direct	high	203	0.995	GCA_005888265.1_00215
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	23812	24039	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	23813	24040	GCA_005888265_1_7_36	GCA_005888265_1_7_36	+	59820	.	PF03693.14	Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH	MFTLSLQQSEQFADLMKTGHFKSEHELFDEMLKSFRYQQKLATLRKEIDKAMACEAVEVTDLNAFFDEIKCRGRK*	hhsuite_tools	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0036	shell	direct	high	227	0.996	GCA_005888265.1_00216
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	24039	24332	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	24040	24333	GCA_005888265_1_7_37	GCA_005888265_1_7_37	+	59820	.	6X0A_C	Inosine-guanosine kinase (E.C.2.7.1.73)	MARRLFVNALAGDDLQLIFDYGVERFGQIQAALFLDKFYDAFSLLCEFDVGVACFDIQPNLYRYVVQGYVIFFERTSSALNVLRVLHGSQDVETQFS*	hhsuite_tools	hypothetical_protein	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0037	shell	direct	high	293	0.997	GCA_005888265.1_00217
GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote	cenote	CDS	24335	25348	GCA_005888265.1	LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265.1_LNKS01000007.1	GCA_005888265.1|LNKS01000007.1	GCA_005888265_1_7	GCA_005888265_1_7@C0	24336	25349	GCA_005888265_1_7_38	GCA_005888265_1_7_38	+	59820	.	PDB:5C6K_B	Integrase	MAVRKDTKNGKWLAEVYVNGKRSRKWFLTKGDALRFYNQAKEGAQSAVDSVTVLASDDLPVLSFYVQEWFDVHGKTLSDCEARLAKLKNLCANLGDPPANEFNAEIFADYRKRRLDGEFSVNKNKPPKEATVNREHAYLRAVFNELKSLRKWTAENPLDGVRLFKERETELAFLYERDIYRLLVECDNSRNADLGLIVRICLATGARWSEAETLTQSQVMPYKITFTNTKSKKNRTVPISKELFDMLPKKRGRLFNDAYESFENAVLRAEIELPKGQLTHVLRHTFASHFMMNGGNILVLKEILGHSTIEMTMRYAHFAPSHLESAVKFNPLSNPAQ*	common_virus_hmm	common_virus	C0	25349.0	0	25349	GCA_005888265.1|LNKS01000007.1@region_1_25349@tool_cenote_CDS_0038	shell	direct	high	1013	0.999	GCA_005888265.1_00218
GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote	cenote	tRNA	19591	19661	GCA_005888265.1	LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265.1_LNKS01000060.1	GCA_005888265.1|LNKS01000060.1	GCA_005888265_1_60	GCA_005888265_1_60@C0	19592	19662	tRNA-Trp	tRNA-Trp	+	42453	.	tRNAscan-SE score: 35.1	Trp	NA	tRNAscan-SE	.	C0	42454.0	0	42454	GCA_005888265.1|LNKS01000060.1@region_1_42454@tool_cenote_tRNA_0001	.	.	.	.	.	.