core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_005890465.1|SOQE01000114.1@region_1_2090@tool_cenote	cenote	CDS	1	2087	GCA_005890465.1	SOQE01000114.1	GCA_005890465.1|SOQE01000114.1	GCA_005890465.1_SOQE01000114.1	GCA_005890465.1|SOQE01000114.1	GCA_005890465_1_13	GCA_005890465_1_13	1	2088	GCA_005890465_1_13_1	GCA_005890465_1_13_1	-	2090	.	PDB:3GUD_A	Neck-appendage-protein	FGFVFDNLDPYLSKSDIGTTWTLSFDYKLDEVDGSFPFHMMHNGGNGFGIEGQKKSTATREWQRFRLTGPVFFKEDAPSESKLQMILFNSDLGYEGTLFIRRIKLEKGTLATDWSPALEDTNGLITQAKASFERTAQELRTDLSVVQAYVTQDGQRQESLQRYTREESARQARAVREQISRDYVGKSSYQEDVEGIHRRIEGVKTSANREITSQIASYRQSADGTFRDISSQITTYKQDMTRNIANLSHQLAGKVETTDFQRVKETSELYERILGNTENGIADKVARMAMTNQLFQVEVGKYSVSGPNLIKNSDFKNDTNKWVSTQNLGRLVKHSFYHNGQKDLMRLSNATKNKNFLSSHRFNLERNTDYVLNFRGFNNSALASYDVYILGRRAGESDGFTIFKKVVSSKKLSTSRCEDVSVTFNSGEMDNAYIRFENNGSSSGTADLYITEVDLYKGYKPRTWQPHPEDAVADANKKLEATQTKMTQLAGSWLVQNINSAGDLISGINLGANGHNRFVGKLTHITGETLIDRAVIKSAMVDKLKTANFESGSVTTAVLAAEAVTADKVKFDHAFIRKLIANDAFIGELTSKRIFATKIESVVNRSTFLEAYQGQIGGFTIGRFAQGRGRWISGVNQFSVGMGNGEGGSYNGENTAFWANWGYSWNSPGPNAWYVTTLGNMHCRNGANFHGRVDFS	hallmark_hmm	common_virus	NaN	.	0	2090	GCA_005890465.1|SOQE01000114.1@region_1_2090@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	1	1227	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	2	1228	GCA_005890465_1_45_1	GCA_005890465_1_45_1	-	16768	.	PDB:3GUD_A	Neck-appendage-protein	MIYLTEGNRPLNEAYNDEIVHFGNNTYQLTFRFPTSDPKWELLKEETFLTADDLHGEQDFYIFEVEKQQGYIQVYANQVISLLNNYIVSSIEVDRVSGTRVLSAFAGSITRANPFSFFSDIDDRHTLNIKDKNAMEVLAKDKHSILGQWGGDMVRNGYNLRLLKNGGSENESLFMYKKNLSSYQHKTSTKSLKTRITFKTTVKGEGEKAVDHDYMVVIDSPLLGNYSQIYEDVVEVNDQDVTDEASLIAYGKQYFRTSMCDMLEDNLEISVVGQSDVAVQMFDVVSIYHEWYGLDVRKKITKYTYSPMAKRLKSIGFGTFQSSLANAIGGIVNDAVLNESRNLHQIFEERLKKEIANADRAFDAEFDKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRE	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0001	persistent	ambiguous	low	3	0.002	GCA_005890465.1_01037
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	1224	1922	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	1225	1923	GCA_005890465_1_45_2	GCA_005890465_1_45_2	-	16768	.	PDB:2X8K_A	Distal-Tail-Protein	MFYMIINGFNTSTIPHCVVTDFGQVEAAKPRVAEDANLYGANGSYRVLDGGYESYERTFSFYIPKLLDVSTIVEKFQPKDNVLEFSYQLGSVFYADFIGATYSPHGMHAWKLELKLSMQPFRYQKNLAPLIFTASGNINNPGSVYSEPVIEIEGDGDISLTIGRTTMNLTVRRKVTIDCRHKKQNIYNADGAVQNTLRKRGGFFELAVGNNGLVFTGAVRKVTVRPNWRYIL*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0002	persistent	direct	high	698	0.999	GCA_005890465.1_01037
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	1922	6097	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	1923	6098	GCA_005890465_1_45_3	GCA_005890465_1_45_3	-	16768	.	PFAM:PF10145.8	minor-tail-protein	MASGTPLGQMYIELGLDVSKFSPTLTGAKNAVKYFQNNVRSLDSTLKGNEKNASLLQAKYKTLGQAIDSQRKVLDEMKKSFDKLEPGTAKFDKAAADIQRENAKLAVMEGQLRGVEKALQDVGRENSWSGKMDTLSENFAKGGEKLRAMGDAMKPVSAALLAGFTLSTKKAIDFESQMNTTKSLLADTIPTADELNSTTQKLGESSKNWAKQYGISTASINEGMQEIIKKGFDANQTIEAMPAILDAAKASGEDFNTVMNATTNILQQFGLSTQDTERVTNSLTFVANKTAAGFADMGAAMEYVGPVAKNVGMNLEETAAAVGLLSNNGIAGEKAGTALRGALTRLLKPSEQNANAMEKLGFSAEEFRSGAIKLPDILDRIKKNTEGMTDAQKSALIATAFGTEAQTAMNILVDQGGDALRNLANETKGATTYTKDLANELSKSSKNGVERFKSSLEVLQINIGQKLLPLLTPVIDKVNQFIDWLSKAPPAVQSLAVGIGGFLALGYPLLNFLGNGATALSILIKHAGKLEGLLKGGLGLAKLTERAGKLKGLLQGGLGLAKVGSEATVLAEGAGAAASSSSLLSGAIGALTNPIGLLVGGAALLAGGLVYLGHKKDEARIKAEEFGSQLSDTARKELRDFQSKVDDTSTAVANFGTHAGDAEKVSEAFRKLHEEVAAGAEKANQRMEELAKKLGFSDEEIAKMKVKNDQVVSNTDAMANQVSEIYKRHNGDASKFSQEEKEIVLNNQREMIKARIEMMELSGEQQKAALQALNGEIGSLNETQLKHTRDVLKKALDEENQLYKTSKDGLKQLLDAKRIDQETYNKKIQELETNHQQTMEALGTKYYQVMQNLDAKVKARTGQSWNYWEEAKKVLEEYGLSYEVIGQKAAEASQKMGDSHSILAKYTSDMSKETREANDAWSLLVGNIDENNNFVIKSNVKEVIGEATKSAEGWEQLQFIVKNANINSNARVTIAEALVESGKWSTMTLEEKQLIVQNQAGLQAIFDSENNLRIWNSMPAEVKQLLLENTDVMNKAEEASKALYNYDALTPKQKELLATDENFRKAVARSTDTLTTWNAITPFTKDLKLDPTNVLNNGQLSIDKIMAWNLSNPENKSLNATDNTSEAVASAKASVNSPKQEKPIDLLAKDQTAGVRNETSAAINAIKQHNPVDILAKNSTSSTVSEVKSVVNSIQDKTVTISARDNASGVLAGIRSWITRVTGDFFTNVFASRHAHGTNYHPGGLAMVNDQRNSTYKELVTLPDGRSFIPEGRDVLLPLPKGAKVLRADKTKRLMREMGVPKYAAGVGIPSDAKFLREMEEAQARIVVQAKGDTNIKDSDKVVSEIAILRASMEKILTAILEKPSDTYLDADKISMSVYQRQGAIYAREGM*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0003	shell	direct	high	4175	1.0	GCA_005890465.1_01038
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	6154	6384	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	6155	6385	GCA_005890465_1_45_4	GCA_005890465_1_45_4	-	16768	.	.	hypothetical protein	MSRKEKACRRYWFWFTIFILYLAFGLYCICTNFVDIFGMLLLSPFIFASLPLYAYLFLGMFIWAFMNMAMDDFYKE*	.	hypothetical_protein	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0004	shell	direct	high	230	0.996	GCA_005890465.1_01039
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	6633	6926	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	6634	6927	GCA_005890465_1_45_5	GCA_005890465_1_45_5	-	16768	.	.	hypothetical protein	MAKVQFTIKNDKGEDVLKKSKEITTRDYRDYLVMNESLTSDLSEVEKLDKQLGFIASLFDDVTVEQLLEYTDFAKVISIFTAIYAHLVGDVDPKEKS*	.	hypothetical_protein	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0005	shell	direct	high	293	0.997	GCA_005890465.1_01041
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	6972	7568	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	6973	7569	GCA_005890465_1_45_6	GCA_005890465_1_45_6	-	16768	.	PFAM:PF04630.11	major-tail-protein	MTVKGTALIGLKSVTIRVHDGQTPTVGQNLFTLEGKDNEGATQTARVTGLSSDPVKTYGSNVAYHVSNRGVGDVKVEMGLLDVPLALYTNALGYGDDDGIYYFGADTVAKNVSILIESNTADGEPVYYGFYKGQLSMDAIDFETLKDKANELATTSVNFTATASSDVATKGRYGAIVYGSDAEKLKKLKGQLNITAAG*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0006	shell	direct	high	596	0.998	GCA_005890465.1_01042
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	7585	7965	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	7586	7966	GCA_005890465_1_45_7	GCA_005890465_1_45_7	-	16768	.	PFAM:PF05657.10	tail-component	MIKDKLTELYDALEEDESLSGISIKSFERPESLGDGETSIVIIPVGPPMQTAHGSNTSLAKTFLYQINVESTNRVECKELQGRIEKIMEEQGFYQTEGGLEQWIPDIKRYVDVRTYRGMSALYEKY*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0007	shell	direct	high	380	0.997	GCA_005890465.1_01043
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	7965	8363	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	7966	8364	GCA_005890465_1_45_8	GCA_005890465_1_45_8	-	16768	.	PFAM:PF04883.11	tail-component	MSSGANLKGFDDILRNIEARLGEPVIRRKVNRALKETVEEFEPTFKRAMAVYADTGKTVGAVVHGNVTGTSSGVPMVKLGFKSPRWTIIHLNEFGYAKNGHPRGFGVMRRFFEASKPVFKSKVGMKLKQEFL*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0008	shell	direct	high	398	0.997	GCA_005890465.1_01044
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	8356	8745	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	8357	8746	GCA_005890465_1_45_9	GCA_005890465_1_45_9	-	16768	.	PDB:2KZ4_A	head-closure-knob	MKRSEGPSYRYKKPESQNGDLRTPLTFYTSKIKKGVDGRDVSYEKAFYTMGQTYSPSMKDVEIATGKAMKAKMTLKIRDPLTDYQPENRHFVEVGDIRLVGKKWQIIDVRPDFANRDFLIVLIGGGRDV*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0009	shell	direct	high	389	0.997	GCA_005890465.1_01045
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	8732	8920	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	8733	8921	GCA_005890465_1_45_10	GCA_005890465_1_45_10	-	16768	.	.	hypothetical protein	MIKVLKEFYDLKEGVLRQVGERFEATEERFAELKEHLPDYVELEKSSRSRSSKEVVSVNEEE*	.	hypothetical_protein	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0010	shell	direct	high	188	0.995	GCA_005890465.1_01046
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	8913	9203	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	8914	9204	GCA_005890465_1_45_11	GCA_005890465_1_45_11	-	16768	.	CDD:cd08054	Head-Tail-Connector-Protein	MEIEAKLHSLLIPFKERMRIFHSGEDANLSRMLESSQMVITRLVGSGNIHDHQIRELILERARYVYNDQVEFFYENFKADILALSLDKIEMEDSDD*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0011	shell	direct	high	290	0.997	GCA_005890465.1_01047
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	9217	10332	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	9218	10333	GCA_005890465_1_45_12	GCA_005890465_1_45_12	-	16768	.	PFAM:PF06673.10	Major-Capsid-protein	MMKLGNEFTTARQNFMNAVETGAPMEEQNKLYNEMIEALTDKLQDDAREAARKEIATMNPYDAQLTAEAREFFNNIEKLPPKGIEKLFPQETIDRIFEDMVAARPLLQHIGLRNAGIRLKFLKSSRTGQAVWGKINAEIQGQLKQEFAEEEAIQSKLTAFVVIPKDSEKFGPAWLQSYVSIQITEAFAAALEAGYLNGDGDNKPIGLSRTLTGTAESEKVTYAEKQAQKKPLTFADSATVVKELTEVYKYHSTKADNTTPVAVEGNLVMVVNPVDAWDVKKQYTSLNAQGVYVTAMPYNLILVESVAQASGKVTTFVKGRYDAFVGGGIEFGRFTETYALEDLNLYTAKQFAYGKAHDEKTAAVWTLSIAK*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0012	shell	direct	high	1115	0.999	GCA_005890465.1_01048
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	10351	11073	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	10352	11074	GCA_005890465_1_45_13	GCA_005890465_1_45_13	-	16768	.	PDB:1TG6_E	Putative-ATP-dependent-Clp-protease	MTIIQIKGAIVSNDDRWFYDWLDMDATAPKDIVLPTTGEDVEVHINSGGGDVYAGSEIYTALRAYQGHVTVKIVGIAASAASVIAMAGDQVEISPTAQIMIHNVSAGVRGDHKALLHEAGVLEGFNKSIAYAYIDKTGKALDDLLDLMEGETWFDARSAVNHGFADKVMFESQEAPVLVASQTPVIPRDFIEKIRSAMTPDVELLADLVRDRLNNSLPIPEDKKKEDKTAEPVGLGRFPF*	common_virus_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0013	shell	direct	high	722	0.999	GCA_005890465.1_01049
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	11054	12202	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	11055	12203	GCA_005890465_1_45_14	GCA_005890465_1_45_14	-	16768	.	PFAM:PF04860.11	Portal-protein	MGFLNLFKRDAPDVGFDFEELERMLGCLQLKSLAIDKSAEFVARIFAKSEFRYMVENHHVTSDWDYILNVRPNKNESASEFWQKVIYRLLTKNEVLIVLSDDKQLLVADAFTRRRYALYDDTFEMVSVGDYTFQRKFAMSDVIFLQYNNNRLQEYVSDLFSDYEKLHTSLVEALARNNQIRGVLATKANGTFDEDKRKKLQRYADNLFKSFTSKTVAIVPTMDGVEYSELTNTVGTTNLSVEELKKLRRQFDDEVADILGLPTALMHGDMADLSNSQKMFNSYCYESLVKKVGDALNHAMVSSAGYANQKKFVIFGEGGLDKFALAENIDKLISSGAMTRNEVRLELGLEAVPGGDSFLITKNYQGENEIEKGGNEDDNHSD*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0014	shell	direct	high	1148	0.999	GCA_005890465.1_01050
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	12258	13898	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	12259	13899	GCA_005890465_1_45_15	GCA_005890465_1_45_15	-	16768	.	PFAM:PF03354.14	Large-Terminase	MISHPLVDDYIKMAENGEVVVNKERKLLFKIIKEKIYPRDDLYFDNDLIDKFIRFAEKNFFPLAKYQLFLTPFIFLFRKVDEEPHFDEYLYTLARGGGKNGFMSARSSFFISPIYPIRDYDVTITANSEKQGKVSFEEVYETIQRRGLEDHFYLTKMSITGRANNSVFSFRTNNPKTMDSARDGCLEFDEIHQFENDKAVKVQRSGLGKIAHVRTFYNGTNGYVREGFYDKLIEKSMQILNGEVDDFRLFPFICKLDSADEVDDMKNWPKANPMLDESTPYAKRLLARTKADYDDLELEPSGRQEFMTKRMNLPEADLEKDVTTRERLLACLRSPGIDLLGKSCVAGFDYASIRDFASVGLLFKNGDEFIWKQHSFARKAFLKAFKLKAPIQEWADRGLFTIVDGPSIDPRLLVEKLNEWSKFYQIELVCADGFRMDLLKPLLEEAGFEYEFLRNPGAIQSKVAPIIEDGFANERFIFENDNSMIWYTDNTYVKEDKDGNKRFLKKEPVRRKTDGFHALIAALYKRELVHESNVGEFLDMLEDWEF*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0015	shell	direct	high	1640	0.999	GCA_005890465.1_01051
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	13895	14233	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	13896	14234	GCA_005890465_1_45_16	GCA_005890465_1_45_16	-	16768	.	PFAM:PF05119.11	Small-Terminase	MEEYSEKNIKELENQLLSKIGYFSPRKKDAIQYEKVNRYLYLVRLLYELKAKLHEDGLVITVHNGQQRFQKANSLIKEINTTSNQLLAIERSFDFDVENSPVEKATSGSDLL*	hallmark_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0016	shell	direct	high	338	0.997	GCA_005890465.1_01052
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	14352	14648	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	14353	14649	GCA_005890465_1_45_17	GCA_005890465_1_45_17	-	16768	.	PDB:5H0M_A	HNH-endonuclease	MIEVSTREERNQFYNSSEWRTIRRQALKRDHYECVWCRDEGKVTTTNLEVDHIKELEFYPEFALDIDNLRTLCKACHNKRHDRFDKNDRNFRKDEWWG*	common_virus_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0017	.	unmatched_CDS	none	0	0	.
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	14862	15404	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	14863	15405	GCA_005890465_1_45_18	GCA_005890465_1_45_18	-	16768	.	CDD:cd01192	site-specific-tyrosine-recombinase	MNIVEPIRDKDDIQAMKDYLREWNERNYILFLFGINSGLRVGDILKIRVKDVQGWYIKLKEQKTGKKKKIKMTKTLKREVREYIQNKPHHHFLFQSRVGKNKPLDRRTVDWILKVAASECGIENIGTHSMRKTFGYHYYKKTKDIAMLMSLFNHSSPAITLRYIGIRQDQQDKAMSNFGL*	common_virus_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0018	shell	direct	high	542	0.998	GCA_005890465.1_01053
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	15704	16132	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	15705	16133	GCA_005890465_1_45_19	GCA_005890465_1_45_19	-	16768	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPKSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQASNLLVYK*	mmseqs_cdd	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0019	persistent	direct	high	428	0.998	GCA_005890465.1_01054
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	16203	16433	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	16204	16434	GCA_005890465_1_45_20	GCA_005890465_1_45_20	-	16768	.	PDB:2FJR_A	Repressor-protein-CI	MKDKLNPRQASRFAFLLKQKRKERKLSQEKLAAKLGYSRYLIAKWEKEESVPNIYNVEDICTYFAFPADIILGSRA*	common_virus_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0020	shell	direct	high	230	0.996	GCA_005890465.1_01055
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	16423	16602	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	16424	16603	GCA_005890465_1_45_21	GCA_005890465_1_45_21	-	16768	.	PFAM:PF04936.11	host-nuclease-inhibitor	MNEYALYQGETFVTIGTLEEISKETGIAERMLKYYTFASTQKRHPNGRAVIKIEVDDEG*	phrogs_hmm	hypothetical_protein	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0021	shell	direct	high	179	0.994	GCA_005890465.1_01056
GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote	cenote	CDS	16595	16765	GCA_005890465.1	SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465.1_SOQE01000004.1	GCA_005890465.1|SOQE01000004.1	GCA_005890465_1_45	GCA_005890465_1_45@C0	16596	16766	GCA_005890465_1_45_22	GCA_005890465_1_45_22	-	16768	.	PFAM:PF11753.7	nucelotide-kinase	AIDVVHNFVGSLSGASAFFWGNAIKYMLRFQKKNGLEDLKKARKNLDWLIEEMEHE*	common_virus_hmm	common_virus	C0	16769.0	0	16769	GCA_005890465.1|SOQE01000004.1@region_1_16769@tool_cenote_CDS_0022	shell	ambiguous	low	9	0.053	GCA_005890465.1_01056
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	1	1233	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	2	1234	GCA_005890465_1_86_1	GCA_005890465_1_86_1	-	17664	.	PFAM:PF07902.10	minor-structural-protein	MDALTRRQFDRAMFAKERTLAIRVGDYTSRDIKEASFEYGYIKGDTYKPGGTCAGSGKITFTSIITTFNKLDTLHPEIGLLVGDTYQWVKMGEYFINDIEIDRNRNTTTLELMDGMFKLNREYVTDLHFPAEVREVIQEICLKTGIELANDYFGISAMRYHVEQVPEGKKLSFRDMLSAMTQMIGMSCFFNREGKMEIRDLTESNITINADSYFLHGLTKSEIEYQIAGITCKTDKKPLTVGMKTGRSLELDNVFMTQSALNDLYYNLKNLTYYPYNLNYQGHLLLEVGQWVTIQTNKKETFKVPVLSQSFTFKGGLRGRISADSKAGNDTQYSYEGTITKQIKQQDGIEAKIQAQIEAADAAFDAEFTKREKAITDAIELAKAKAEEVKQEVSDTINQRFNSFHDEPLRE	common_virus_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	1238	1588	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	1239	1589	GCA_005890465_1_86_2	GCA_005890465_1_86_2	-	17664	.	.	hypothetical protein	MAQLTINGVAVKPPKSFQVGIQDIDGETGRNANGDMVRDRITTKRKLDCEWGMMTQGELSQLLHAVSSEFFEVSYPDPMDGQVTKTFYVGDRTAPSYSFTEKFKPWSGAKFNLVER*	.	hypothetical_protein	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0002	shell	direct	high	350	0.997	GCA_005890465.1_01890
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	1597	4623	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	1598	4624	GCA_005890465_1_86_3	GCA_005890465_1_86_3	-	17664	.	UniProtKB:A0A0R1V141_9LACO	minor-tail-protein-	MAMIESTEAFKKFANGQSWQQLDYQTQQQIRLMAILEQATAKYGDTLSNSVNGRISLFKSLMKDSALNLGNAMLPIINAIMPVLNSFAMVLKNVTAKLAEFIALMFNKKATVKDGVGGAVGDMGNAMKDAAGGAGDLADAVDDAGDSAGGLADNLGDSAKNAKKAAKELLGLLGFDEINILQKPKDDDAGGSGGGGKGGKGKGGGGGPFKDILPEVELTDMDNQFKSIFDGLGDKLKGLFDLFKKGFDAAFGPEGIERIKTALDQIAKTMGEIATDPRVVNAFNRMAEKIAYALGQVTGSIATIGLGIGVFLAESIANGLGRQKERITRALVALFDNIGNIAEAVGNIAQAFSSAFYDVITSTGAVRIGSAIVSTLLSLTSTIVEVGSKLAGSLFKGFEKVVVTSAPKISSVFQSLLDTVAPVFESIERSVNKFGDGLSRVYDEHVVPAINSIANAFNGLIDIIQILWENSWQPFAEFLSGVFGVSIEGISDLLGGGLLATLGLLADAIKLVADGFAVFSDWCKENKEPILALITAWQTINFLSWAEQAGGLAGAFELLSGKVSFIVSGIKNLGLALKALTFDKLVSFGETIYLNALYAKDFVVNSGKLIAELGKTALELGKSALAWGVHAAQMGLAAAAEIAQSIAAGVAAAATWALNGAIAVLTSPITLVIAAIAALIAIGVLLYQNWDTVVEFAKTAWQGLCDFISGICQSIGEFFSGLWTKLQEIFEPIGQWFGEKFQQAWDAISNTFSKLGSWFGDRWNESKDALAEANTWLGDKFKSGRDKVNSAFEKVGSWFGDRWNDIKDGVKEADTWFGEKFESAKKKTQNPFQKIGSWFGDRWKNMQDALKEIPNWFKNLFNDAMDNAKNIVKSGIDKLKSFFNFDWSLPKIKLPHFNISGSFSLMPPRIPSFSVDWYARGGVFNSPSIIGVGEAGQEAVMPLERNTGWISILAQKLAERMPANNVPTGYSLPAGDIVIQIAGHEFGRVAIQEINKEHERAGQTLLKI*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0003	shell	direct	high	3021	0.998	GCA_005890465.1_01891
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	4925	5488	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	4926	5489	GCA_005890465_1_86_4	GCA_005890465_1_86_4	-	17664	.	PFAM:PF04582.11	tail-length-tape-measure-protein	MATLDELKVMIDAEIAPFRKKMKEVENQVKGTSDQVKNATAKIREQSSSIGSAFGKLAKFAGFAILGKKLLDVGMYSTQTALEVSAAMNQIKRQMGESSQSFLKWVNDNANAMNMGVGEATNYGAVYSNLFSGFIKDTNKLSAYTAKMLQTSAVVAEGSGRTITDVMERIRSGLLGNTEAIDFCRTA*	phrogs_hmm	hypothetical_protein	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0004	shell	direct	high	563	0.998	GCA_005890465.1_01892
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	5475	5825	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	5476	5826	GCA_005890465_1_86_5	GCA_005890465_1_86_5	-	17664	.	.	hypothetical protein	MFLDIGGKPLDFWDLTVLEIREMIESYNRVKIQERKEKIIDSYRLSQMISNHVSLLLSKDAKVFEFWEYAPELFVEEQQAVEQERQRQALLLHKERMRDFADRHNRKRKEEMNGNS*	.	hypothetical_protein	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0005	shell	direct	high	350	0.997	GCA_005890465.1_01893
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	5864	6244	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	5865	6245	GCA_005890465_1_86_6	GCA_005890465_1_86_6	-	17664	.	PFAM:PF12363.7	tail-assembly-chaperone-protein	MALPYSIWKISDEKELKLRLSSHQAAKVEEKIGMNLLKIFMPEAGEEFPLPPLKVVLLLIHGALQKYENGYSLEDVYDLYDEYVDNGGDQTTFMTEVLMPLFEVSGFTPRGSKGKKTSKKKMTVVE*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0006	shell	direct	high	380	0.997	GCA_005890465.1_01894
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	6249	6662	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	6250	6663	GCA_005890465_1_86_7	GCA_005890465_1_86_7	-	17664	.	PFAM:PF16463.4	tail-tube-protein	MLANGITLSYSETKGSYTKLVGLKEVPEFGIEPEKVENTTLEDKVKKYEFGIGDAGELEYKFSYNNSSETAPYRVLRKAADDKKKLYFEQAYPDGTKVNFEGQVSVKLGGGGVNAVIEFTLKIALQSELEFTDGLGG*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0007	shell	direct	high	413	0.998	GCA_005890465.1_01895
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	6665	7033	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	6666	7034	GCA_005890465_1_86_8	GCA_005890465_1_86_8	-	17664	.	PFAM:PF05657.10	tail-component	MINIKPVIYKELQKVADNVTDTYPSDWETFPVVIFLEEQNKPGDWFDDQEQKSSIRYKVDIFDDTSTSELAVKINQIFESLGLRRTDCQDVPDPSHLRHKVMRFEGVVDLHSELVFQFRMEN*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0008	shell	direct	high	368	0.997	GCA_005890465.1_01896
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	7030	7545	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	7031	7546	GCA_005890465_1_86_9	GCA_005890465_1_86_9	-	17664	.	PFAM:PF04883.11	putative-tail-component	MSELRGADRLIAKCRRLASKKTGEDIVLRAVHNAAIKVVQADAKRLAPGNNGELRNSIKTRVKMDGDKAIGEVYTNLHYAPYVEFGTGPKGQASHSGISPEVSVTYRSSPWYVHEDQINVGPYHFQKIGEFYKMYGQPAQPYLYPALRDNQERVSKNISDYVRRKIREQIK*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0009	shell	direct	high	515	0.998	GCA_005890465.1_01897
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	7520	7858	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	7521	7859	GCA_005890465_1_86_10	GCA_005890465_1_86_10	-	17664	.	PDB:2KX4_A	head-closure-knob	MFLKQSRLKPYPMRRFEKTVTEEGVVKEGYAKEAETVRLELWPASSKLQSEMYGERVNDILNANANKSATIKVKDGVCIDSPTEVTHRVISKKVYTYHQVLELERVRATRGR*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0010	shell	direct	high	338	0.997	GCA_005890465.1_01898
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	7839	8150	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	7840	8151	GCA_005890465_1_86_11	GCA_005890465_1_86_11	-	17664	.	PFAM:PF05135.12	head-tail-adaptor	MSIELLKKMTGEEDTQLLMLLQTRATNLILSEANRTSLTPALSRLIPEVAIELHNRSGAEGEHSRTEGGIAVVYGENGLSTGLLQRIRMHRLARVAGHVFEAE*	phrogs_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0011	shell	direct	high	311	0.997	GCA_005890465.1_01899
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	8152	8340	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	8153	8341	GCA_005890465_1_86_12	GCA_005890465_1_86_12	-	17664	.	.	hypothetical protein	MKFKIKQDFYDWELNVKRLAGEELEITEERYAELADNFASNGVAISDVLEEILPEPEFLEED*	.	hypothetical_protein	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0012	shell	direct	high	188	0.995	GCA_005890465.1_01900
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	8330	8512	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	8331	8513	GCA_005890465_1_86_13	GCA_005890465_1_86_13	-	17664	.	PFAM:PF09124.9	endonuclease-VII	MSLLLRRHYIQEEQAGQYSDLENKTLEELKNLAKEAGITGAYKLSKAEIVEVLEDLKSEI*	phrogs_hmm	hypothetical_protein	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0013	shell	direct	high	182	0.995	GCA_005890465.1_01901
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	8524	9366	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	8525	9367	GCA_005890465_1_86_14	GCA_005890465_1_86_14	-	17664	.	PDB:4AN5_F	Major-Capsid-protein	MTAGQTKLATMVNPEVMADMVSAKLPKLIKFTPLAYVETALQGQPGNTLTVPAWEYAGDATEVGEGQAISPDKLTTKKTTMTIKKAAKGYEITDEALLSGLGDPLGQATYQLGLAIANKIDDDLVAVAKTATQHVAEAPTTLATIDKALEIFEDEEDARYVAIINPKDAIKLKTDVAKEWTKGSELGADMVVSGTFGEAAGVQIVRSKKVDEGKGFIVKVSPSQTQTDDANKYGAFVILLKRDVAIETDRDILKKTTVITGDEHYGVYLYDPTRVVKFGE*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0014	shell	direct	high	842	0.999	GCA_005890465.1_01902
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	9372	9941	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	9373	9942	GCA_005890465_1_86_15	GCA_005890465_1_86_15	-	17664	.	PDB:6B0X_d	capsid-scaffolding-protein	MNEETQTVETVEEQKVPAEPAQQPQDEKKYTDADVDAIIDKKFAKWKSEQEAKENEAKKLAKMNADEKQKYQLDQREQELADREKAIARKELTAEAKAMLSERDLPVELVNVVDLTSAETVSQSVAVLQKSWEQAVQKGVQEKLKGGAPMKQAPVDSDGITKEEFARMGYQSRNELYQKNPELYKKLKG*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0015	shell	direct	high	569	0.998	GCA_005890465.1_01903
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	10231	11727	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	10232	11728	GCA_005890465_1_86_16	GCA_005890465_1_86_16	-	17664	.	PFAM:PF06152.10	minor-capsid-protein	MDKAEKQADQFDKVYQEAKTYLDKEVNKIFDKFQRDYGLSQVDARQVLKNMKDKKNLNELRKVLEARPNDPNIQRLLADLDSPAYSFRMKRLERLSDDLDRMRESIYHSEKTGSDAFYSDLMKDSYYKATFDLQQQTGLAYGFSGLPESEIKHLQSFSWVGDGSTYSTNIWKNTGKLTSSIKDELLMSLMTGRGTRETAQAIAERFNVGQNDARRLVRTESAFFHNQMELLNYEEADIEKYIFVAVLDKRTSRICQEHDNQVYDRDKAVPGVNCPPMHPWCRSTTVGYDEDADYSNLKRRARNPETGKVEYVPADMTYKEWYSKYVAKDVKNEIQDYKKSDKTVSRYNTPKLFSDVSNAWDEIGRGGLSKEQLVDLLKSEYELGNFSSDITKLIGVSSAYIDVSSLATSLVRHGQQYSLDEFMLIKEAVQKPYLILDNSERVEKSIISYVKIPNKDKVIMEAVMVPRDEMLVIHFNKVGIRQVKKNGKNMLTLYKKEK*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0016	shell	direct	high	1496	0.999	GCA_005890465.1_01905
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	11690	12127	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	11691	12128	GCA_005890465_1_86_17	GCA_005890465_1_86_17	-	17664	.	PDB:5A20_A	Portal-Protein	MGLEMITKTKEANYKRGLRQRIAIFAHYLGMKQIALESHSIVPQFSRGLPKNLLEISQIVNNLEGKVTNRQLISLLPFVEDPDAELEALEEEKKKNMEDMPMFNKDNTKPEDEVEDEESGVLGEEESQSDLPADGQGRKAGRPVR*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0017	shell	direct	high	437	0.998	GCA_005890465.1_01906
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	12357	12890	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	12358	12891	GCA_005890465_1_86_18	GCA_005890465_1_86_18	-	17664	.	PFAM:PF05551.10	homing-endonuclease	MIKDKMHKHLNQVYYSMLARCYDEKHWAYKWYGKRGIGVSDEFSDVAKFRSWAMQNGVEFGLQLDRIDNDKDYSPSNCRWVPEHTNKRNRSDNVKYKGYILRDYLKKLSEENNISFSTLVYRYYRSIKRDDIIVNDETIDDILLNYKKYDLRQFSKGVDMSGKTIVRDEKGRFVTYY*	common_virus_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0018	shell	direct	high	533	0.998	GCA_005890465.1_01907
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	13019	14038	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	13020	14039	GCA_005890465_1_86_19	GCA_005890465_1_86_19	-	17664	.	PDB:5A20_A	Portal-Protein	MYQYLTYPRDGYDEGSLKKDLIYKLITMHNTESSHLKKLKSYYLGEHAILEHTRRNVNAPNYKTVANHAKDIADTATGYFMGNPIKYNNTADGDIDELLTAFDGAEIDQVDAQNALNMAIYGRAYEYIYAKEGMAELDSTSIDPENTFMVYDDSIERKPLFAVYYYEVKDDTKDTTKYQAEVFTENLHYHMVLRSTDSGTTQNEQVTPHNLGQIPIIEYRNNHFAIGDYEQQISLIDAYNSLMGNRVNDKEQAVESILVLYGTQLADTPEDAKVAMKILSEEGLLELPGDSARAEFLKNTLDESATEILRTALKEDIYTFSHVPNLTDENFAGNTSGVK*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0019	shell	direct	high	1019	0.999	GCA_005890465.1_01908
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	14050	15264	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	14051	15265	GCA_005890465_1_86_20	GCA_005890465_1_86_20	-	17664	.	PDB:5OEA_B	Large-Terminase	MTNKFTKRQEEVLTRVLNDDFFICGLHGAKRSGKTVLNNMVFMNEIARVRETADRLNIDEPMYILAGTSSTSIQNNIIQELYNMFDIEPKYDKHGAFTLCGVKVVQVYTGSISGLKRARGFTAFGAYVNEASLANEQVFKEIISRCSGEGARIVWDSNPDIPTHWLRRDYINSGDDMIIDFHFKLDDNTFMSDRYRENIKNATPAGVFYDRDILGLWVTGEGVVYRDFSENMVVDNVPEDITKVYAGVDWGYEHFGSIVVIGETSGGSAYLLEEHAHQYKEIDFWVDLAKNIKERYGNITFWADSARPEHVARFQREQLRTFNANKAVLSGIEEVAKLMKAGRFFVVSNKVSKFKDEVYQYIWNEKTGEPVKENDDVLDAVRYAIYSQHSQPKATVRRRSDYGL*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0020	shell	direct	high	1214	0.999	GCA_005890465.1_01909
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	15254	15757	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	15255	15758	GCA_005890465_1_86_21	GCA_005890465_1_86_21	-	17664	.	PFAM:PF03592.15	Terminase-small-subunit	MEVMGIGLNQRQKMFASEYLRTGNVYQSAIFAGYSEAYAKTTASKLLENASVKTFIQTETEKMHDENILSAKEALSILSDIARGQRLEEVLMMNPVTGEVDRVTKKADNNTVIKAIAEILKRYPTAKQAEKLELEIEKLKSQIGVDNEQDDKLIDFAKALRGAFDDK*	hallmark_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0021	shell	direct	high	503	0.998	GCA_005890465.1_01910
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	16360	16788	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	16361	16789	GCA_005890465_1_86_22	GCA_005890465_1_86_22	-	17664	.	TIGR01637	phage transcriptional regulator, ArpU family. This model represents a family of phage proteins, including ArpU, called a putative autolysin regulatory protein. ArpU was described as a regulator of cellular muramidase-2 of Enterococcus hirae but appears to have been cloned from a prophage. This family appears related to the RinA family of bacteriophage transcriptional activators and to some sporulation-specific sigma factors. We propose that this is a phage transcriptional activator family. [Mobile and extrachromosomal element functions, Prophage functions, Regulatory functions, DNA interactions]	MQIELLDIIDEKKTRKEAIKVLKKYSRLRRIAGEEYAPKITISYSLEPRSSSGQTSKQVESMVLRRVSAQQDLELIAKAINNLSDMEYTRILIERYCRKKRREDYSIYSELGYSSSEYYRILNKALLEFAESYQVRNLLVYK*	mmseqs_cdd	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0022	persistent	direct	high	428	0.998	GCA_005890465.1_01912
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	16918	17133	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	16919	17134	GCA_005890465_1_86_23	GCA_005890465_1_86_23	+	17664	.	PFAM:PF04014.17	transcriptional-regulator	MNTVKTRKVGNSVTVTIPKTLNVPEGQEMFVYKGVDNVIVLAPKIPDPFNGDADLRMEDDFEGVRFLDSEI*	phrogs_hmm	hypothetical_protein	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0023	shell	direct	high	215	0.995	GCA_005890465.1_01913
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	17117	17470	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	17118	17471	GCA_005890465_1_86_24	GCA_005890465_1_86_24	+	17664	.	COG2337	mRNA-degrading endonuclease, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]. 	MTAKYDYIPEKQDIIWIDFDPSVGREIQKRRPAIVVSRREYSERTGFVAVCPITHGQSRLEEQGLLVPVRSNKVDGSVNPLQLYTFDFRERKAQKITTMDTTSFQKVVQLYNFIFEA*	mmseqs_cdd	nonviral_gene	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0024	shell	direct	high	353	0.997	GCA_005890465.1_01914
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	CDS	17491	17661	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	17492	17662	GCA_005890465_1_86_25	GCA_005890465_1_86_25	-	17664	.	PFAM:PF11753.7	nucelotide-kinase	AIDVVHNFVGSLSGASAFFWGNAIKYMLRFQKKNGLEDLKKARKNLDWLIEELEKN*	common_virus_hmm	common_virus	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_CDS_0025	.	unmatched_CDS	none	0	0	.
GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote	cenote	tRNA	15807	15877	GCA_005890465.1	SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465.1_SOQE01000084.1	GCA_005890465.1|SOQE01000084.1	GCA_005890465_1_86	GCA_005890465_1_86@C0	15808	15878	tRNA-Trp	tRNA-Trp	-	17664	.	tRNAscan-SE score: 60.6	Trp	NA	tRNAscan-SE	.	C0	17665.0	0	17665	GCA_005890465.1|SOQE01000084.1@region_1_17665@tool_cenote_tRNA_0001	.	.	.	.	.	.