core_seqid	core_source	core_type	core_start	core_end	core_bax_acc	core_contig_acc	core_bax_acc|contig_acc	core_bax_acc_contig_acc	cenote_input_name	cenote_contig	cenote_phage_region_id	cenote_gene_start	cenote_gene_stop	cenote_gene_name	original_cenote_gene_name	cenote_gene_orient	cenote_contig_length	cenote_dtr_seq	cenote_evidence_accession	cenote_evidence_description	cenote_translation	cenote_Evidence_source	cenote_vscore_category	cenote_chunk_name	cenote_chunk_length	cenote_chunk_start	cenote_chunk_stop	UNI_lookup_ID	pangenome_partition	pangenome_method	pangenome_confidence	pangenome_overlap_length	pangenome_overlap_fraction	pangenome_matching_locus_tag
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3726560	3726874	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	1	315	GCA_006149185_1_1_3156	GCA_006149185_1_1_3156	-	4952323	.	.	hypothetical protein	MFYSTTFAPAFERERRYKMMKQTFRKKSSGIIWKFKIKVFIFAATFAKRKRQKSSLRDLHNSTSSTSIGEEIFRIDTVNRSMTLDYNNGFRSEDMIKQFKQRRV*	.	hypothetical_protein	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0001	.	unmatched_CDS	none	0	0	.
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3727084	3727221	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	525	662	GCA_006149185_1_1_3157	GCA_006149185_1_1_3157	+	4952323	.	.	hypothetical protein	MIQKYKSLNINSLKTRLCFTGKSYMFMRKVVRVFEKSRTCFSEVT*	.	hypothetical_protein	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0002	.	unmatched_CDS	none	0	0	.
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3727463	3727999	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	904	1440	GCA_006149185_1_1_3158	GCA_006149185_1_1_3158	+	4952323	.	pfam14065	Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	MIHVLINTLAEKMNEFLSSYYERAEIIVEAGSIDATPNEDQSDKIILSIVNIERETAMGISAPYRNTKNNTFQQTSPPWYLNIYIMVAAVFSSKRYLESIQILSDSISFLQQNSILKLPDQGTITLEPITISMQELSNIWSILGGHYYPSILCKARIISFDGTEIKDIKQRISSQKIN*	mmseqs_cdd	nonviral_gene	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0003	persistent	direct	high	536	0.998	GCA_006149185.1_03269
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3728090	3728845	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	1531	2286	GCA_006149185_1_1_3159	GCA_006149185_1_1_3159	+	4952323	.	7ADZ_1E	extracellular contractile injection system, STRUCTURAL	MKFDFLINIIFSHEYYNECIPSEIFEIEPRRTNRVVLGGPKYPFRQTGRNQYALIGDREELLDHLSISPDGLNLEFQAHSKDPNFLLYTQSLLPEELNDSDIQLSVIDNRLNRLNVIIHVTKELLETKCPIQKEIHYHTKEAYWDFILIPRNPENASMDIFMEDNGPENISFKNPEQIRFMDKDVFRISTEYPIKIKEESYYQRRSNITIYEKREYAKRMLLRHVPVPSLGRFLIKELQSTENSIIQILYI*	hhsuite_tools	hypothetical_protein	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0004	persistent	direct	high	755	0.999	GCA_006149185.1_03270
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3728865	3730373	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	2306	3814	GCA_006149185_1_1_3160	GCA_006149185_1_1_3160	+	4952323	.	PDB:3J9Q_Q	tail-sheath	MAQMKTPGVYIIEKNAFPNSVVEVATAIPAFIGHTQFARDGNKDLTGIPFRISSMAEFHSFFGFAPTLRFGIRPEDSESEDTTNDINVLFPDGSCQLTLPKTFYALYYNMLLFYANGGGPCYIVSIGDYEHDFKSIDFTNALLALKKEQEPTLVVVPEAVYMEEGDCYKVQTAALMHCGNDMKNRFAILDVFNGYKDENGAVIKSFRENIGSNFLAYCASYYPWINTSIVTEKDITFYNIEKDSLEKLEELILNEFSKKSGVTNEAVNELMDKFKLLLTMKEDEAERFHTLLYQVSSVYRSILREIRLRINLLPPSASLAGLYTMVDNTRGVWKAPANISINNVVTPALSITNAEQEDLNVPMNGKAVNAIRSFPGEGIKVWGARTMDGNSLDWRYINVRRTMIFLEESIKNAARAYVFEPNVANTWVNMRSMIDGFLRGVWKRGGLAGTSPEDAYSIHIGLGDTMTPEDILEGILRISVFVAITRPAEFIEITFQQQMQKS*	hallmark_hmm	common_virus	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0005	cloud	direct	high	1508	0.999	GCA_006149185.1_03271
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3730411	3730863	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	3852	4304	GCA_006149185_1_1_3161	GCA_006149185_1_1_3161	+	4952323	.	PFAM:PF06841.11	major-tail-protein	MAGEAQDNVWPLPSFYFKVELGSLGEIAFKEVSGLDMEAQVIEYRHGNSPVFSNIKMPGLKKTSNVSLKKGVFKADNKLFDWFNKIKMNTIQRENVTISLLDEAGSPTMVWKLSNAWPTKVTGVSLKSDGNEAAIETLDLAHEGLTIENA*	hallmark_hmm	common_virus	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0006	persistent	direct	high	452	0.998	GCA_006149185.1_03272
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3730863	3731366	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	4304	4807	GCA_006149185_1_1_3162	GCA_006149185_1_1_3162	+	4952323	.	PFAM:PF06841.11	major-tail-protein	MLRFDHIVPPPVAFYFNVTFEGLIETSFQEVSGLQLEMETETIKEGGENSFSYQVPTRRKHGNLVLKRSLMPLPHVLETYVVKVLENNGSAQIVPVNLTISLLDAGHFPLNNWSVLNAYPVKWDISALNSQKNELVIETLEMAYTNLIRMSIRDTEDTKKEQFKQWL*	hallmark_hmm	common_virus	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0007	persistent	direct	high	503	0.998	GCA_006149185.1_03273
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3731357	3731524	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	4798	4965	GCA_006149185_1_1_3163	GCA_006149185_1_1_3163	+	4952323	.	7AEF_t	extracellular contractile injection system, STRUCTURAL	MAITIKEIQVSTKVTQQKKEPDLPLSRDLIQQIKEEIIREAKKDLSNLFSCRKER*	hhsuite_tools	hypothetical_protein	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0008	persistent	direct	high	167	0.994	GCA_006149185.1_03274
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3731528	3732184	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	4969	5625	GCA_006149185_1_1_3164	GCA_006149185_1_1_3164	+	4952323	.	pfam19266	Contractile injection system tube protein. This protein is part of a contractile injection system. This family includes the Pvc7 protein from the Photorhabdus asymbiotica virulence cassette (PVC). Pvc7 is made of a tube protein (this entry) and an additional LysM domain. The equivalents of these two parts in T4 phage are gp48 and gp53, respectively.	MNQKLIIEAYKSIEYKGGEKLGSITVQINPDSYKLSKSTSYKKDESIKEDKQLPEYKHTNPSTLSFDIHFDGTGIIPTGKKTVTERIKDLENIIFLPSAEIDPPSPCFLKVIWGSLIFKGRLTSLNWDYTLFSPNGNPLRAKGSLSLTEAISSRETQAKKKNQKAEGKFVTFKQGDSLIGLCAKEYKNSGYAPMIASINNLISFRDIKPGTQLWFPKI*	mmseqs_cdd	nonviral_gene	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0009	persistent	direct	high	656	0.998	GCA_006149185.1_03275
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3732190	3733947	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	5631	7388	GCA_006149185_1_1_3165	GCA_006149185_1_1_3165	+	4952323	.	PDB:3CDD_F	tail-protein	MDNSFIIKLFLNGKDVTEQYSVINAKIYRACNKIDKATISISADIIDNSQFEIPDNKIFNPGTELKFQAGPTDKVNTLFEGCVTTHQLKINSEQQTLFILECRGFAYPATFGRKNNVYENSKDDTVIKKILGQYGLSAKVDSTGIEIPQLVQYYCTDWDFVLTRAQNNGLVVITDGKQVKVCKPNVSASPVLTITYGDNLIAFDGSISASEQYTDTKACAWDVSRQQIIKATASKPPLNVQGDIAAKDLSGLANEVMLYQTNAPIGDASLHAWADAQALWSGLARFQGSITIYGNASIIPGCIIKLEGLSKHYSGNAFVQSVEHTLQGGEWKTQVYMGFNPVVITEEPDVVAPAASGFLPGIRGLQIGIVKKIGDNKDFENFILVDIPLLQCEKTEIWARPVSPYASNGVGMLFLPEVDDEVVLQFINEAPCHPVIVGSLYSRKRKTPVSLDPKNNLKTIVTKNQLKITLDDDKKIITIGTPGENTLILDDDKKQILLSDANKNKVCMDKNGIMVESGKDLIFKARGNVKTEGMGIESKSKQDTKINGLNIEVSAQMGVKVKGSATAEISASGQTVVKGGVVMIN*	common_virus_hmm	common_virus	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0010	persistent	direct	high	1757	0.999	GCA_006149185.1_03276
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3733960	3734364	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	7401	7805	GCA_006149185_1_1_3166	GCA_006149185_1_1_3166	+	4952323	.	PDB:5IW9_B	Baseplate-wedge-protein	MQNKNSFLGKGWAFPPEFSHNDNPTRMSNYEEDIRQSLVILLSTRTGERIHRPDYGTELYRYQFEQLDLTMETMIKSAIEKAVLLYEPRVSLDRIEINKASIQDGILIIELYYTIRMNNVQQELTYPIYFDSNR*	hallmark_hmm	common_virus	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0011	persistent	direct	high	404	0.998	GCA_006149185.1_03277
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3734361	3735917	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	7802	9358	GCA_006149185_1_1_3167	GCA_006149185_1_1_3167	+	4952323	.	7AEF_I	extracellular contractile injection system, STRUCTURAL	MNKQWNKDGLTRKKLENDFRIHEPFQVLEKNLSNLLARAFSKSSSLYHYQSLAILNEIKQTDTIGIEQSFILWQNENSPESNREITYLRNALYHKFSDWYQRLNHRIFRDSMSDLFLDMEKYNQRLQLITLSNPKTVRRSLYLLLRILRNLQNKREIYIQEIAKSGETDPSLAVLIAFLKNYQYLVDQFNKRWEAYPLFYVNQILKESPQKAIIPSAWFIAVKNNTTRQAQLPKGTGIITQVPFPVQDIQFCYRTDEDYSVNNMKITSIHSLLLEKDPKKYPASRLGFVTSIWQKQLNNRIGNVPSKKPNLDSELIFENQSSIQAGLIIESPMLLLREGHRDIHITFGLEEDSISYFKELIATTEQSSHETGRVLNDAFLLELSTEKGWDPIYAYTLTFINENSFYLKFVLNEKFDPTTPCSEAHGCQTRNPALRILMNTDAWLFPYSWVHRIFITSLKIKVHVSGMSSLKIYNPLGEVDASVHFPLFGLEAQKGSWFAFGNYEIAIKPIQSMGITLQ*	hhsuite_tools	hypothetical_protein	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0012	persistent	direct	high	1556	0.999	GCA_006149185.1_03278
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3735954	3737402	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	9395	10843	GCA_006149185_1_1_3168	GCA_006149185_1_1_3168	+	4952323	.	CDD:TIGR02243	putative-baseplate-assembly-protein	MYQAYKTPIDNTTFKVEWEKLTDQKWVKLPESTSCLFNTKNKHTSPKGKLSEYSEIVYDKPFKNITVSTEEEQYQYTKAQQGFFRIRLTDPNGGFGQTEYRILFADIMIRNSHTRKQTPVPKPPYNPMIESIDIGYSAEEEYFFNGDTPRDRCRIYHIHPLRQKELHEIDLRHPFPMVGVPTEDGIILFGIGNSIGNDQIRLFFEMAALKREIEKEYLPCVQWSFFNGKQWEFIKPGNLLSDTTGNLLNTGLVDILLPSPISEEMLDINGDFWLSAKVSCHTQNCSSIRNVYLNPVKARLEIPEEMEALISEELESFTGLVSFEKSMPGLTDIYQIIPAKGGRLPETPEDMRLQITQEMSHRNRAVLPRDYEQITLAQFPEVEKVLCLPGIDSKAQNRSPIVTLVVMQKEKDKKILPLCEHRLLMRIEDYIGDKTSPFITVDAITPVYEEVTVCCNLRIKPGYPVGDILRQTEARINNCIAP*	common_virus_hmm	common_virus	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0013	shell	direct	high	1448	0.999	GCA_006149185.1_03279
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3737564	3738643	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	11005	12084	GCA_006149185_1_1_3169	GCA_006149185_1_1_3169	-	4952323	.	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]. 	MNEWIDWFQRVLDVSIRLYFRQECDLSSVYDIPLPKAGPLWKALLPEQVDPTFDEWMVLMLALMPHLSPQMLDIFFVHNKNFDCPYTEFGGWKGLSHGGFLPTGETAVFLLAGDRVERRLEVVRLFREEHRFHMYHVVGLEGAGNGEPFLSGQLRISEDFLYRLSFEGEYKPDYNMGFLAKRISTALNWEDVVLSYYVREELEEINNWITGHRVILSDWGLSRFLKAGYRTLFYGPPGTGKTLCATLIGKKNGMDVYRIDLSMIVSKYIGETEKNLANVFDQAENRNWIPFSVFLFVRGISGLFYLLIIKLLPTPKYPSSSCSSSSSFWSIYSKCLSEGTNMHQGWEGLTLKFCLASSG*	mmseqs_cdd	common_virus	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0014	persistent	direct	high	1079	0.999	GCA_006149185.1_03280
GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote	cenote	CDS	3738640	3739173	GCA_006149185.1	CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185.1_CP040468.1	GCA_006149185.1|CP040468.1	GCA_006149185_1_1	GCA_006149185_1_1@C235	12081	12614	GCA_006149185_1_1_3170	GCA_006149185_1_1_3170	-	4952323	.	PF13699.6	Domain of unknown function (DUF4157)	MITIGTLKLDLVADREPFVHDLYGRWDTFNRTSLEGIVDEILSRYDTEDEDELLQGKFVAQRQTKNQTGIPDHVIQGMESSFGTDFSSVRVHPDSSKAPEVGALAYTQGTDIHFAPGQFKPDTSAGQQLLGHELTHVIQQAKGRVQPTTEVGGMAVNDDLSLEHEADVMGAKAASVL*	hhsuite_tools	nonviral_gene	C235	12614	3726560	3739174	GCA_006149185.1|CP040468.1@region_3726561_3739174@tool_cenote_CDS_0015	cloud	direct	high	533	0.998	GCA_006149185.1_03281